BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13152
(61 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2TMA|A Chain A, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
pdb|2TMA|B Chain B, Tropomyosin Crystal Structure And Muscle Regulation.
Appendix. Construction Of An Atomic Model For
Tropomyosin And Implications For Interactions With Actin
Length = 284
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 10 AESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAADESER 54
AE++VA+LNRRIQ ATA KL EA +AADESER
Sbjct: 81 AEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESER 125
>pdb|2W49|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|A Chain A, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|T Chain T, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|U Chain U, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|V Chain V, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|W Chain W, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|X Chain X, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 277
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 10 AESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAADESER 54
AE++VA+LNRRIQ ATA KL EA +AADESER
Sbjct: 74 AEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESER 118
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 10 AESEVAALNRRIQXXXXXXXXXXXXXATATAKLAEASQAADESER 54
AE++VA+LNRRIQ ATA KL EA +AADESER
Sbjct: 81 AEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESER 125
>pdb|2B9C|A Chain A, Structure Of Tropomyosin's Mid-Region: Bending And
Binding Sites For Actin
pdb|2B9C|B Chain B, Structure Of Tropomyosin's Mid-Region: Bending And
Binding Sites For Actin
Length = 147
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 17 LNRRIQXXXXXXXXXXXXXATATAKLAEASQAADESER 54
+NRRIQ ATA KL EA +AADESER
Sbjct: 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESER 38
>pdb|3U1C|A Chain A, Anti-Parallel Dimer Of N-Terminal 98-Aa Fragment Of
Smooth Muscle Tropomyosin Alpha
pdb|3U1C|B Chain B, Anti-Parallel Dimer Of N-Terminal 98-Aa Fragment Of
Smooth Muscle Tropomyosin Alpha
Length = 101
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 10 AESEVAALNRRIQ 22
AESEVA+LNRRIQ
Sbjct: 84 AESEVASLNRRIQ 96
>pdb|4A7F|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|B Chain B, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|H Chain H, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 136
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 36 ATATAKLAEASQAADESER 54
ATA KL EA +AADESER
Sbjct: 10 ATALQKLEEAEKAADESER 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.117 0.303
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 812,342
Number of Sequences: 62578
Number of extensions: 8431
Number of successful extensions: 19
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 61
length of database: 14,973,337
effective HSP length: 32
effective length of query: 29
effective length of database: 12,970,841
effective search space: 376154389
effective search space used: 376154389
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)