Query psy13152
Match_columns 61
No_of_seqs 109 out of 188
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:55:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003|consensus 99.3 5.6E-12 1.2E-16 85.3 5.7 50 10-59 2-51 (205)
2 PF00261 Tropomyosin: Tropomyo 99.0 1.2E-10 2.6E-15 78.7 2.9 57 3-59 27-83 (237)
3 PF12718 Tropomyosin_1: Tropom 98.5 5.1E-07 1.1E-11 57.9 6.8 46 14-59 75-120 (143)
4 PF12718 Tropomyosin_1: Tropom 98.0 5.3E-05 1.1E-09 48.5 7.4 51 3-53 26-76 (143)
5 PF04728 LPP: Lipoprotein leuc 93.2 0.83 1.8E-05 25.5 7.6 49 4-52 2-50 (56)
6 PF00261 Tropomyosin: Tropomyo 92.8 1.1 2.4E-05 30.3 7.6 47 3-49 104-150 (237)
7 COG1579 Zn-ribbon protein, pos 91.9 2 4.2E-05 30.0 8.0 56 2-57 100-155 (239)
8 PF14193 DUF4315: Domain of un 87.9 2.3 5E-05 25.2 5.0 34 20-53 2-35 (83)
9 PRK09039 hypothetical protein; 86.3 6.3 0.00014 28.3 7.4 47 6-52 138-184 (343)
10 PRK11637 AmiB activator; Provi 84.6 9.8 0.00021 27.6 7.9 18 26-43 103-120 (428)
11 PF15456 Uds1: Up-regulated Du 84.4 5.6 0.00012 25.0 5.8 39 6-44 75-113 (124)
12 KOG1003|consensus 82.4 9.7 0.00021 26.2 6.6 39 8-46 77-115 (205)
13 PRK09973 putative outer membra 80.2 10 0.00022 22.7 7.0 46 6-51 25-70 (85)
14 PF13094 CENP-Q: CENP-Q, a CEN 77.0 16 0.00034 23.1 8.0 52 6-57 28-79 (160)
15 COG3883 Uncharacterized protei 71.9 33 0.00071 24.4 8.1 51 10-60 57-114 (265)
16 PF12777 MT: Microtubule-bindi 71.2 34 0.00074 24.3 8.1 28 5-32 235-262 (344)
17 COG1579 Zn-ribbon protein, pos 67.6 33 0.00071 23.9 6.3 39 4-42 44-82 (239)
18 PF15265 FAM196: FAM196 family 67.3 15 0.00032 28.4 4.9 37 12-48 388-424 (514)
19 PF10212 TTKRSYEDQ: Predicted 67.0 56 0.0012 25.4 7.9 45 3-47 432-476 (518)
20 PF11471 Sugarporin_N: Maltopo 66.5 20 0.00044 19.9 4.7 19 18-36 31-49 (60)
21 PF12777 MT: Microtubule-bindi 65.5 46 0.001 23.6 6.9 32 9-40 232-263 (344)
22 COG4026 Uncharacterized protei 64.2 43 0.00093 23.9 6.4 50 6-55 157-206 (290)
23 PF04728 LPP: Lipoprotein leuc 63.4 24 0.00052 19.6 5.3 32 5-36 17-48 (56)
24 PF08317 Spc7: Spc7 kinetochor 63.2 51 0.0011 23.3 7.9 49 6-54 217-265 (325)
25 PF08537 NBP1: Fungal Nap bind 62.3 60 0.0013 23.8 7.2 40 13-52 183-222 (323)
26 TIGR02338 gimC_beta prefoldin, 61.1 33 0.00072 20.5 5.5 37 13-49 68-104 (110)
27 PF10458 Val_tRNA-synt_C: Valy 61.1 26 0.00056 19.2 4.4 27 10-36 2-28 (66)
28 PF05276 SH3BP5: SH3 domain-bi 59.9 56 0.0012 22.7 6.8 44 8-51 180-223 (239)
29 PRK15178 Vi polysaccharide exp 59.5 75 0.0016 24.0 7.3 46 2-47 220-270 (434)
30 smart00787 Spc7 Spc7 kinetocho 59.4 63 0.0014 23.1 7.9 50 5-54 211-260 (312)
31 COG4238 Murein lipoprotein [Ce 59.1 35 0.00077 20.2 6.9 47 4-50 24-70 (78)
32 PRK15396 murein lipoprotein; P 58.8 35 0.00075 20.0 7.1 46 6-51 26-71 (78)
33 PRK10884 SH3 domain-containing 57.8 56 0.0012 22.1 7.8 33 18-50 131-163 (206)
34 TIGR03319 YmdA_YtgF conserved 56.6 87 0.0019 23.9 7.8 26 18-43 75-100 (514)
35 PRK12704 phosphodiesterase; Pr 56.6 87 0.0019 23.9 7.9 29 18-46 81-109 (520)
36 PF10152 DUF2360: Predicted co 55.9 50 0.0011 21.0 5.2 31 5-35 14-44 (148)
37 PF07111 HCR: Alpha helical co 53.7 84 0.0018 25.5 7.0 46 7-52 509-554 (739)
38 COG4942 Membrane-bound metallo 53.2 98 0.0021 23.4 7.8 11 11-21 44-54 (420)
39 PF05546 She9_MDM33: She9 / Md 53.1 73 0.0016 21.9 6.8 46 12-57 32-77 (207)
40 PHA02562 46 endonuclease subun 52.9 89 0.0019 22.9 6.8 43 7-49 360-402 (562)
41 COG3883 Uncharacterized protei 52.9 81 0.0018 22.4 7.7 49 6-54 32-80 (265)
42 PF15136 UPF0449: Uncharacteri 51.1 55 0.0012 20.0 4.8 30 15-44 63-92 (97)
43 PF12004 DUF3498: Domain of un 51.1 5 0.00011 30.7 0.0 49 6-54 370-422 (495)
44 PF02994 Transposase_22: L1 tr 50.3 96 0.0021 22.5 7.0 22 17-38 142-163 (370)
45 KOG0977|consensus 49.7 91 0.002 24.4 6.5 45 5-49 148-192 (546)
46 PF00769 ERM: Ezrin/radixin/mo 49.6 83 0.0018 21.6 6.5 31 10-40 3-33 (246)
47 PF11932 DUF3450: Protein of u 49.6 79 0.0017 21.3 8.0 45 8-52 52-96 (251)
48 PF13747 DUF4164: Domain of un 49.3 54 0.0012 19.3 6.9 31 8-38 35-65 (89)
49 PF04508 Pox_A_type_inc: Viral 48.8 29 0.00062 16.1 2.7 18 13-30 2-19 (23)
50 KOG0976|consensus 48.4 1.1E+02 0.0025 25.8 7.1 46 4-49 112-157 (1265)
51 COG1382 GimC Prefoldin, chaper 46.1 75 0.0016 20.0 6.2 41 13-53 7-47 (119)
52 PF05739 SNARE: SNARE domain; 46.1 44 0.00096 17.4 7.3 39 9-47 22-60 (63)
53 KOG1962|consensus 45.8 99 0.0022 21.4 5.7 40 11-50 150-189 (216)
54 PF10211 Ax_dynein_light: Axon 45.4 88 0.0019 20.6 7.5 43 9-51 117-159 (189)
55 PF00846 Hanta_nucleocap: Hant 45.0 58 0.0013 24.7 4.7 29 21-49 4-32 (428)
56 PF08826 DMPK_coil: DMPK coile 44.7 56 0.0012 18.2 5.3 33 21-53 13-45 (61)
57 PF10212 TTKRSYEDQ: Predicted 44.7 1.3E+02 0.0028 23.5 6.6 31 3-33 453-483 (518)
58 TIGR03185 DNA_S_dndD DNA sulfu 44.4 1.4E+02 0.0031 22.9 7.5 42 6-47 210-251 (650)
59 PRK09343 prefoldin subunit bet 43.3 77 0.0017 19.4 6.5 43 13-55 72-114 (121)
60 PF08537 NBP1: Fungal Nap bind 43.0 1.3E+02 0.0029 22.0 6.6 39 5-43 182-220 (323)
61 KOG0612|consensus 41.0 2.1E+02 0.0045 24.9 7.6 51 3-53 499-552 (1317)
62 PF04977 DivIC: Septum formati 40.8 60 0.0013 17.5 5.6 40 9-48 21-60 (80)
63 PF12072 DUF3552: Domain of un 39.8 1.1E+02 0.0024 20.1 7.8 36 13-48 79-114 (201)
64 PF02388 FemAB: FemAB family; 39.4 1.5E+02 0.0032 21.6 8.4 51 7-57 244-297 (406)
65 PF02185 HR1: Hr1 repeat; Int 39.4 67 0.0014 17.6 4.4 28 7-34 35-62 (70)
66 PF14048 MBD_C: C-terminal dom 38.7 56 0.0012 19.7 3.2 29 17-45 67-95 (96)
67 PF10168 Nup88: Nuclear pore c 37.5 1.9E+02 0.004 23.2 6.7 33 17-49 584-616 (717)
68 PRK08032 fliD flagellar cappin 37.3 1.7E+02 0.0037 21.7 6.3 27 10-36 411-437 (462)
69 PF07439 DUF1515: Protein of u 37.0 1.1E+02 0.0023 19.3 4.4 27 12-38 8-34 (112)
70 COG1382 GimC Prefoldin, chaper 36.5 1.1E+02 0.0024 19.3 5.7 36 8-43 73-108 (119)
71 TIGR03185 DNA_S_dndD DNA sulfu 36.2 2E+02 0.0043 22.1 7.6 42 13-54 210-251 (650)
72 PF15361 RIC3: Resistance to i 35.9 49 0.0011 21.3 2.8 21 10-30 129-149 (152)
73 PRK14139 heat shock protein Gr 35.9 1.3E+02 0.0029 20.0 5.7 40 10-49 30-69 (185)
74 PF11559 ADIP: Afadin- and alp 35.3 1.1E+02 0.0024 18.9 8.0 35 10-44 64-98 (151)
75 PRK14161 heat shock protein Gr 35.0 1.3E+02 0.0029 19.8 6.5 39 10-48 17-55 (178)
76 PF12128 DUF3584: Protein of u 34.9 2.7E+02 0.0059 23.3 7.5 42 10-51 605-646 (1201)
77 PF06698 DUF1192: Protein of u 34.8 85 0.0018 17.4 5.4 24 13-36 22-45 (59)
78 cd04776 HTH_GnyR Helix-Turn-He 34.7 1.1E+02 0.0023 18.5 4.8 14 17-30 85-98 (118)
79 PF14077 WD40_alt: Alternative 34.4 47 0.001 18.0 2.1 12 6-17 19-30 (48)
80 PF12329 TMF_DNA_bd: TATA elem 34.4 91 0.002 17.6 6.1 35 14-48 35-69 (74)
81 PF01920 Prefoldin_2: Prefoldi 33.9 93 0.002 17.6 5.3 33 15-47 65-97 (106)
82 TIGR02338 gimC_beta prefoldin, 33.9 1.1E+02 0.0023 18.2 6.5 33 5-37 74-106 (110)
83 KOG0996|consensus 33.4 3E+02 0.0066 23.9 7.5 51 4-54 376-426 (1293)
84 PRK14472 F0F1 ATP synthase sub 32.8 1.3E+02 0.0029 19.1 6.2 11 23-33 53-63 (175)
85 KOG0250|consensus 32.7 3.2E+02 0.0068 23.4 7.8 49 6-54 662-710 (1074)
86 PF12072 DUF3552: Domain of un 32.3 1.5E+02 0.0032 19.5 8.0 47 7-53 66-112 (201)
87 PF05911 DUF869: Plant protein 32.3 1.5E+02 0.0033 24.0 5.5 43 5-47 666-708 (769)
88 KOG4657|consensus 32.0 1.9E+02 0.0041 20.5 6.8 30 11-40 99-128 (246)
89 PF11221 Med21: Subunit 21 of 32.0 1.3E+02 0.0029 18.8 5.5 36 18-53 103-138 (144)
90 PF10234 Cluap1: Clusterin-ass 31.9 1.9E+02 0.0041 20.5 5.8 30 9-38 187-216 (267)
91 PF08614 ATG16: Autophagy prot 31.9 1.5E+02 0.0032 19.3 7.6 43 6-48 131-173 (194)
92 PF04880 NUDE_C: NUDE protein, 31.3 1.6E+02 0.0034 19.5 4.7 34 8-42 3-36 (166)
93 PF04912 Dynamitin: Dynamitin 31.2 1.5E+02 0.0033 21.4 5.0 36 13-48 247-283 (388)
94 PF02403 Seryl_tRNA_N: Seryl-t 30.9 1.1E+02 0.0025 17.7 5.3 30 8-37 70-99 (108)
95 COG4942 Membrane-bound metallo 30.5 2.4E+02 0.0053 21.4 7.4 27 9-35 63-89 (420)
96 PRK06798 fliD flagellar cappin 30.4 2.3E+02 0.005 21.1 6.5 37 7-43 381-417 (440)
97 TIGR00998 8a0101 efflux pump m 30.4 1.8E+02 0.0038 19.8 7.8 9 10-18 85-93 (334)
98 PF05529 Bap31: B-cell recepto 30.1 1.5E+02 0.0034 19.0 5.3 10 21-30 163-172 (192)
99 PF13015 PRKCSH_1: Glucosidase 29.9 1.1E+02 0.0023 19.8 3.7 23 7-29 5-27 (154)
100 PRK14160 heat shock protein Gr 29.8 1.9E+02 0.004 19.8 7.7 42 8-49 57-98 (211)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.6 1.4E+02 0.003 18.3 5.9 34 10-43 15-48 (132)
102 PF01517 HDV_ag: Hepatitis del 29.1 1.3E+02 0.0029 20.3 4.1 24 4-27 24-47 (194)
103 PF05644 Miff: Mitochondrial a 29.0 1.4E+02 0.003 20.9 4.3 21 10-30 200-220 (246)
104 TIGR01837 PHA_granule_1 poly(h 28.8 1E+02 0.0022 18.8 3.4 14 13-26 97-110 (118)
105 PF15456 Uds1: Up-regulated Du 28.7 1.5E+02 0.0033 18.5 5.5 25 12-36 22-46 (124)
106 PRK07353 F0F1 ATP synthase sub 28.6 1.4E+02 0.003 18.0 6.0 10 24-33 41-50 (140)
107 KOG1029|consensus 28.5 1.2E+02 0.0026 25.5 4.3 45 4-48 436-480 (1118)
108 PF12325 TMF_TATA_bd: TATA ele 28.3 1.5E+02 0.0033 18.4 7.0 36 10-45 28-63 (120)
109 PF15205 PLAC9: Placenta-speci 28.1 1.3E+02 0.0028 17.5 5.1 30 13-42 19-48 (74)
110 PRK00106 hypothetical protein; 28.1 2.9E+02 0.0063 21.5 7.9 24 20-43 98-121 (535)
111 smart00338 BRLZ basic region l 27.9 1.1E+02 0.0023 16.4 5.1 8 17-24 31-38 (65)
112 PF10018 Med4: Vitamin-D-recep 27.8 1.8E+02 0.0038 18.9 6.3 37 15-51 25-61 (188)
113 CHL00019 atpF ATP synthase CF0 27.7 1.7E+02 0.0037 18.8 6.2 8 24-31 60-67 (184)
114 PRK04863 mukB cell division pr 27.2 4.3E+02 0.0093 23.2 8.2 47 8-54 995-1041(1486)
115 KOG4001|consensus 26.9 2.3E+02 0.005 20.0 6.3 44 6-49 179-222 (259)
116 PF09325 Vps5: Vps5 C terminal 26.6 1.8E+02 0.004 18.7 6.5 29 6-34 164-192 (236)
117 PRK05771 V-type ATP synthase s 26.4 2.4E+02 0.0052 21.7 5.6 25 8-32 96-120 (646)
118 PF08172 CASP_C: CASP C termin 26.4 2.3E+02 0.0049 19.7 5.6 30 5-34 93-122 (248)
119 PF02996 Prefoldin: Prefoldin 26.2 1.4E+02 0.0031 17.3 6.0 35 13-47 78-112 (120)
120 PRK08475 F0F1 ATP synthase sub 26.2 1.8E+02 0.004 18.5 6.2 26 10-35 58-83 (167)
121 COG2433 Uncharacterized conser 26.0 2.3E+02 0.005 22.8 5.4 10 10-19 434-443 (652)
122 PRK14148 heat shock protein Gr 25.7 2.2E+02 0.0047 19.2 6.9 39 11-49 39-77 (195)
123 PRK12705 hypothetical protein; 25.5 3.2E+02 0.0069 21.1 7.9 35 13-47 78-112 (508)
124 smart00742 Hr1 Rho effector or 25.1 1.2E+02 0.0026 16.0 3.4 20 9-28 36-55 (57)
125 COG0099 RpsM Ribosomal protein 25.0 22 0.00048 22.6 -0.2 49 10-61 49-101 (121)
126 KOG4421|consensus 24.8 3.2E+02 0.0068 21.3 5.8 36 4-39 583-618 (637)
127 PF04420 CHD5: CHD5-like prote 24.7 1.5E+02 0.0032 19.0 3.7 24 17-40 71-94 (161)
128 cd07665 BAR_SNX1 The Bin/Amphi 24.6 2.4E+02 0.0052 19.4 6.9 24 20-43 160-183 (234)
129 TIGR01010 BexC_CtrB_KpsE polys 24.6 2.5E+02 0.0055 19.7 7.6 42 3-44 149-195 (362)
130 cd00632 Prefoldin_beta Prefold 24.5 1.6E+02 0.0034 17.2 6.7 13 18-30 69-81 (105)
131 PF13600 DUF4140: N-terminal d 24.2 1.5E+02 0.0033 17.0 5.3 30 12-41 70-99 (104)
132 PF11053 DNA_Packaging: Termin 24.1 1.9E+02 0.004 19.1 4.0 43 19-61 42-90 (153)
133 PF10779 XhlA: Haemolysin XhlA 24.1 1.4E+02 0.003 16.5 6.8 39 6-44 7-45 (71)
134 PRK08724 fliD flagellar cappin 24.1 3.8E+02 0.0082 21.6 6.3 35 9-43 628-662 (673)
135 PRK13460 F0F1 ATP synthase sub 24.0 2E+02 0.0044 18.3 6.2 23 13-35 55-77 (173)
136 KOG2264|consensus 23.9 4.1E+02 0.0089 21.8 6.8 45 5-49 100-144 (907)
137 PF07321 YscO: Type III secret 23.6 2.1E+02 0.0046 18.4 7.4 48 7-54 69-116 (152)
138 PRK07737 fliD flagellar cappin 23.6 3.3E+02 0.0071 20.6 6.3 25 11-35 447-471 (501)
139 PF12001 DUF3496: Domain of un 23.6 1.2E+02 0.0025 18.9 2.9 20 24-43 48-67 (111)
140 cd07627 BAR_Vps5p The Bin/Amph 23.5 2.3E+02 0.0049 18.7 7.4 31 19-49 143-173 (216)
141 PF14389 Lzipper-MIP1: Leucine 23.4 1.3E+02 0.0028 17.5 3.0 19 4-22 7-25 (88)
142 TIGR01843 type_I_hlyD type I s 23.3 2.6E+02 0.0057 19.4 7.4 20 13-32 152-171 (423)
143 TIGR02231 conserved hypothetic 23.1 3.2E+02 0.007 20.3 5.8 37 11-47 70-106 (525)
144 PF06657 Cep57_MT_bd: Centroso 23.1 1.6E+02 0.0035 16.9 4.7 36 16-51 14-49 (79)
145 TIGR03319 YmdA_YtgF conserved 22.4 3.6E+02 0.0078 20.6 7.8 32 12-43 76-107 (514)
146 PLN02678 seryl-tRNA synthetase 22.4 2.8E+02 0.006 20.9 5.1 28 10-37 76-103 (448)
147 PRK02224 chromosome segregatio 22.4 3.9E+02 0.0085 21.0 7.4 19 13-31 573-591 (880)
148 PF11853 DUF3373: Protein of u 22.4 1.2E+02 0.0025 23.5 3.2 17 13-29 32-48 (489)
149 COG1196 Smc Chromosome segrega 22.4 4.6E+02 0.01 21.8 7.4 38 10-47 395-432 (1163)
150 PF00416 Ribosomal_S13: Riboso 22.1 28 0.00061 20.8 -0.1 48 11-61 48-99 (107)
151 COG0711 AtpF F0F1-type ATP syn 22.0 2.2E+02 0.0048 18.1 6.1 24 17-40 35-58 (161)
152 KOG0500|consensus 22.0 3.7E+02 0.008 21.2 5.8 44 4-47 460-503 (536)
153 PRK06664 fliD flagellar hook-a 21.9 4.1E+02 0.0089 21.1 6.3 28 9-36 604-631 (661)
154 KOG1853|consensus 21.7 3.3E+02 0.0072 19.9 7.5 33 13-45 85-120 (333)
155 PF04102 SlyX: SlyX; InterPro 21.6 1.6E+02 0.0035 16.2 5.8 35 11-45 17-51 (69)
156 PRK13455 F0F1 ATP synthase sub 21.4 2.3E+02 0.0051 18.1 6.0 27 10-36 63-89 (184)
157 PF11853 DUF3373: Protein of u 21.4 1.4E+02 0.003 23.1 3.4 35 12-47 25-59 (489)
158 KOG0994|consensus 21.2 6E+02 0.013 22.7 7.2 50 2-51 1581-1630(1758)
159 PF07047 OPA3: Optic atrophy 3 21.1 2.2E+02 0.0048 17.7 3.9 12 13-24 113-124 (134)
160 COG5509 Uncharacterized small 21.1 1.8E+02 0.0039 16.6 3.7 23 13-35 26-48 (65)
161 PHA02562 46 endonuclease subun 21.0 3.5E+02 0.0075 19.9 7.1 37 17-53 363-399 (562)
162 PRK08032 fliD flagellar cappin 21.0 3.6E+02 0.0078 20.1 6.4 39 5-43 413-451 (462)
163 KOG0161|consensus 21.0 6.1E+02 0.013 23.2 7.3 44 5-48 1498-1541(1930)
164 PF10359 Fmp27_WPPW: RNA pol I 21.0 3.6E+02 0.0079 20.1 7.5 48 2-49 167-223 (475)
165 PRK03918 chromosome segregatio 20.9 4.1E+02 0.009 20.7 7.7 26 12-37 200-225 (880)
166 cd07596 BAR_SNX The Bin/Amphip 20.9 2.3E+02 0.0049 17.7 6.5 28 8-35 148-175 (218)
167 PF06009 Laminin_II: Laminin D 20.8 33 0.00071 21.4 0.0 21 9-29 14-34 (138)
168 PRK09925 leu operon leader pep 20.8 30 0.00066 16.6 -0.1 9 52-60 17-25 (28)
169 PF11932 DUF3450: Protein of u 20.4 2.8E+02 0.0061 18.6 7.3 40 8-47 59-98 (251)
170 TIGR00414 serS seryl-tRNA synt 20.4 3.6E+02 0.0078 19.8 5.3 23 13-35 77-99 (418)
171 PRK14475 F0F1 ATP synthase sub 20.1 2.4E+02 0.0053 17.8 6.1 33 6-38 42-74 (167)
No 1
>KOG1003|consensus
Probab=99.30 E-value=5.6e-12 Score=85.26 Aligned_cols=50 Identities=70% Similarity=0.842 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhhh
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITR 59 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~~ 59 (61)
++.+|++|++||++++++++++++||.+++.||+++++++|+++|||+|.
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~ 51 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVI 51 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999885
No 2
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.04 E-value=1.2e-10 Score=78.72 Aligned_cols=57 Identities=60% Similarity=0.701 Sum_probs=54.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITR 59 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~~ 59 (61)
++.++.++|.++.+|++||+++|++|+++++||..+..||..+++.+|+++|+++|.
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999985
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.52 E-value=5.1e-07 Score=57.85 Aligned_cols=46 Identities=48% Similarity=0.590 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhhh
Q psy13152 14 VAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITR 59 (61)
Q Consensus 14 v~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~~ 59 (61)
+.+|+|||++||++|+.+..+|..++.||.++...|+.++|.+.+.
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKAL 120 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999998764
No 4
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.99 E-value=5.3e-05 Score=48.52 Aligned_cols=51 Identities=31% Similarity=0.469 Sum_probs=45.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
++.+..+.|.+|.+|++|++++|.++|.++++|..+..++++.++....++
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 456677889999999999999999999999999999999999999766544
No 5
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=93.20 E-value=0.83 Score=25.50 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
+.+.+++..+|..|+-|+.+|..|.......+..+...-..+.+..|..
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999998888877777666666666653
No 6
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.84 E-value=1.1 Score=30.26 Aligned_cols=47 Identities=32% Similarity=0.504 Sum_probs=35.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|...+..++.-.....+|+..+|.+|+++++|+..+-.++.+.+...
T Consensus 104 a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 104 AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 34455666667777788888888888888888888877777666544
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.87 E-value=2 Score=29.99 Aligned_cols=56 Identities=32% Similarity=0.345 Sum_probs=46.6
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhh
Q psy13152 2 IATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWI 57 (61)
Q Consensus 2 ~a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~ 57 (61)
+|+++...++.++..|..++.-+++..+-..+++......+.++++..++..++.+
T Consensus 100 ~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 100 IAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999998888888888888888888888888888888877766544
No 8
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=87.86 E-value=2.3 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.509 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 20 RIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 20 kiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
||.-+..+++++.++....+.+|...+....+.|
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888999998888888888888776665
No 9
>PRK09039 hypothetical protein; Validated
Probab=86.29 E-value=6.3 Score=28.28 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
....+..+|.+|.+.+..++..++.++.+...+..+++......+.+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557789999999999999999999999999998888887766554
No 10
>PRK11637 AmiB activator; Provisional
Probab=84.65 E-value=9.8 Score=27.59 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13152 26 EDLERSEERLATATAKLA 43 (61)
Q Consensus 26 eeld~~eErL~~a~~KLe 43 (61)
.+++..+..+..+..++.
T Consensus 103 ~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 103 KQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 11
>PF15456 Uds1: Up-regulated During Septation
Probab=84.43 E-value=5.6 Score=25.01 Aligned_cols=39 Identities=36% Similarity=0.435 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
...+.++++..+.+||-.+..++...+.|+.....+|-+
T Consensus 75 ~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLe 113 (124)
T PF15456_consen 75 SSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLE 113 (124)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999998888864
No 12
>KOG1003|consensus
Probab=82.42 E-value=9.7 Score=26.22 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEAS 46 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeae 46 (61)
+++....-..-|+|..+|.+|+++++|...+..++.+.+
T Consensus 77 E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLe 115 (205)
T KOG1003|consen 77 EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELE 115 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555678899999999999999888877766554
No 13
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=80.20 E-value=10 Score=22.70 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
+..++..+|..|+-++.++..+...+......|..+=..+.++.|.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5677888999999999999999999888888887777777766665
No 14
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.98 E-value=16 Score=23.09 Aligned_cols=52 Identities=29% Similarity=0.359 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWI 57 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~ 57 (61)
.....|..+.+...-|.+++.++++.+..|..-...|.+.++.+....+.|+
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888899999999999999888888888888866665543
No 15
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.89 E-value=33 Score=24.38 Aligned_cols=51 Identities=14% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hhHhhhhhhhhc
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA-------ADESERDWITRG 60 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~-------adesER~~~~~~ 60 (61)
+-..|..++.++..+..+.+.++..+.....++..++.. ..+.-|.|-+.|
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444445555555555555555555555555444432 233446666655
No 16
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.23 E-value=34 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSE 32 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~e 32 (61)
........++..++.++..+..+++.+.
T Consensus 235 ~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 235 EQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555444443
No 17
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.60 E-value=33 Score=23.94 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKL 42 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KL 42 (61)
|+.....+.++..+...+..++.++....+++..+..++
T Consensus 44 ~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 44 NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555666655555555555555
No 18
>PF15265 FAM196: FAM196 family
Probab=67.29 E-value=15 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
.|+.+|+-+||.+|+-|--.+|...+.+.=+.+.||.
T Consensus 388 ~E~~dLqaqLQsmEe~L~SnQEtIKVLLnVIQDLEKg 424 (514)
T PF15265_consen 388 GELCDLQAQLQSMEESLSSNQETIKVLLNVIQDLEKG 424 (514)
T ss_pred cchHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 3788999999999999999999998888777777774
No 19
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.98 E-value=56 Score=25.39 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=22.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
|..++.-...++.+|.+|+...|.+.+...+.|..+..++...+.
T Consensus 432 adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD 476 (518)
T PF10212_consen 432 ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD 476 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566666666655555555555555444444443333
No 20
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=66.50 E-value=20 Score=19.86 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13152 18 NRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~ 36 (61)
.-||..+|..|..++.|+.
T Consensus 31 EqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 31 EQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 21
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.53 E-value=46 Score=23.63 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATA 40 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~ 40 (61)
.++..+...+.++..+++.+...+..+..+..
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~ 263 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQK 263 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 22
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.23 E-value=43 Score=23.94 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERD 55 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~ 55 (61)
+.+..+.++..++-+|..++-+..+.++.+.....+.....+..++-+-|
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34556777777888887777777777776666665666666666665433
No 23
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.42 E-value=24 Score=19.60 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
.+..++..+|.++.--++..-+|..++.+||.
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777776666666666666666654
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.17 E-value=51 Score=23.28 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
.......++....+.+..++.++......+.....+..+......+++|
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666677777777666666666666666555555543
No 25
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=62.25 E-value=60 Score=23.80 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
.+..|..+|..++.+|.-++.+|.-|++|-...+...|++
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdda 222 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDA 222 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555555555666655555555554
No 26
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=61.13 E-value=33 Score=20.48 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
=+..|+.++..++..++..+..+.....++.+.++..
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555555555555443
No 27
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.07 E-value=26 Score=19.22 Aligned_cols=27 Identities=33% Similarity=0.672 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
.+.++.-|++++.-++.+++.++.+|+
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777777777777777766654
No 28
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=59.88 E-value=56 Score=22.70 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
......+.....++..++..+..+..+...|+..|+.++...=+
T Consensus 180 ~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 180 AKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788889999999999999999999999988875533
No 29
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=59.47 E-value=75 Score=24.02 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=36.6
Q ss_pred hHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 2 IATLLSRHAESEVAALNRRI-----QLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 2 ~a~~~~~~aE~Ev~~L~rki-----q~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
|++.-...+|.-|..|+.++ .-.+.+++.+++||..|...|.....
T Consensus 220 ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn 270 (434)
T PRK15178 220 FAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQH 270 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788899999998874 45888899999999888888876543
No 30
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.45 E-value=63 Score=23.12 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
.+......++....+++..++.++.....++.....+..+......++++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888888888888888888888888887777777765
No 31
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=59.14 E-value=35 Score=20.18 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAAD 50 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ad 50 (61)
+-+..++-..|..|+-++-+||.+.+..-....-|...-..+...+|
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rld 70 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 45677888999999999999999999887776655554444444443
No 32
>PRK15396 murein lipoprotein; Provisional
Probab=58.82 E-value=35 Score=19.97 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
+.+++..+|..|+-++.++..+..........+...-..+.++.|.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888777777666666555555555544
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.84 E-value=56 Score=22.06 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEASQAAD 50 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ad 50 (61)
+..+..++.+.....+.|..+..+++.++...|
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666666655444443
No 34
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.63 E-value=87 Score=23.87 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
.++++..|+.|++-++.|..-...|+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Le 100 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLD 100 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333333
No 35
>PRK12704 phosphodiesterase; Provisional
Probab=56.55 E-value=87 Score=23.88 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEAS 46 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeae 46 (61)
.++++..|+.|++-++.|..-...|+..+
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke 109 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKRE 109 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444444444444333
No 36
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=55.90 E-value=50 Score=20.98 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
.=+..+|+-+..+.+|||.+|-.|.-.+.+|
T Consensus 14 ~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL 44 (148)
T PF10152_consen 14 RFASVCEEKLSDMEQRLQRLEATLNILEAKL 44 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355678888888888888888776666665
No 37
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.67 E-value=84 Score=25.51 Aligned_cols=46 Identities=30% Similarity=0.403 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
.++.+.|...|+.+.+.+|..|....+.+......|+.+.+...++
T Consensus 509 rEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes 554 (739)
T PF07111_consen 509 REQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQES 554 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4578889999999999999999999998888888888888766444
No 38
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.20 E-value=98 Score=23.45 Aligned_cols=11 Identities=45% Similarity=0.836 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy13152 11 ESEVAALNRRI 21 (61)
Q Consensus 11 E~Ev~~L~rki 21 (61)
..++..++++|
T Consensus 44 q~ei~~~~~~i 54 (420)
T COG4942 44 QKEIAALEKKI 54 (420)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 39
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=53.05 E-value=73 Score=21.94 Aligned_cols=46 Identities=30% Similarity=0.432 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhh
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWI 57 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~ 57 (61)
+.|..|.+.+..+|..+..+..++..|......+-..-..+.|-.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn 77 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVN 77 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888999999999999999998888888877766666665443
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.93 E-value=89 Score=22.92 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
...++.++..|..+...+++++....++|......+.+..+..
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655555566666666666666665555555544
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.91 E-value=81 Score=22.43 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
.....+.++..++...+.++.+++.....+...+.|..+..+.-+.+.-
T Consensus 32 ~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ 80 (265)
T COG3883 32 KIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA 80 (265)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777776666665543
No 42
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=51.13 E-value=55 Score=20.01 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 15 AALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 15 ~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
-++|.||++....|-+.-+.|..+-++|+.
T Consensus 63 v~~NerLqqa~~~Lkkk~e~L~~age~Le~ 92 (97)
T PF15136_consen 63 VAMNERLQQARDQLKKKCEELRQAGEELER 92 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999988888888888777777763
No 43
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=51.07 E-value=5 Score=30.65 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHhHhhhHhhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATAT---AK-LAEASQAADESER 54 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~---~K-LeeaeK~adesER 54 (61)
+.++.|.||..|+.||....-.|+..+.||...- .| |-+-....+++|+
T Consensus 370 ~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~ 422 (495)
T PF12004_consen 370 EVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEE 422 (495)
T ss_dssp -----------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHH
Confidence 3456788999998888888888888887775442 12 2333334455554
No 44
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=50.34 E-value=96 Score=22.51 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13152 17 LNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a 38 (61)
|+.|+..+|+.++..+.++...
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i 163 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEI 163 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444444444444433
No 45
>KOG0977|consensus
Probab=49.65 E-value=91 Score=24.39 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
.+...+++++..+++++..+|+++.+..-........|..+.+..
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345568888899999999999988887766555555555555543
No 46
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=49.65 E-value=83 Score=21.57 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATA 40 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~ 40 (61)
+|-+-..|-.||.+++++..+++..|..+..
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~ 33 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEE 33 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666666666666666655543
No 47
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.58 E-value=79 Score=21.31 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
..+..++..|++.+..++...++.+..+.....++...++..+..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666555555443
No 48
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.26 E-value=54 Score=19.30 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a 38 (61)
...+.+|..|+.--..|..+||.+..|+...
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 5677788888888888888888888875433
No 49
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=48.79 E-value=29 Score=16.05 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLER 30 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~ 30 (61)
|+..+..||.-||..|+.
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 567778888888877654
No 50
>KOG0976|consensus
Probab=48.36 E-value=1.1e+02 Score=25.77 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
..++...|.+...|+--|+.+++++..++-+|...+..|.+.+++.
T Consensus 112 Qn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eL 157 (1265)
T KOG0976|consen 112 QNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDEL 157 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4556677778888888888888888888888888888887777654
No 51
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.14 E-value=75 Score=20.05 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
++..+-.++|++.+.+...-.+....-..|.+.+++.+|.+
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666555555555555555555554443
No 52
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=46.10 E-value=44 Score=17.41 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
+.-.+|..-+.-|..++..++.+..++..+..+|..+.+
T Consensus 22 ~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 22 DIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777888999999999999999998887655
No 53
>KOG1962|consensus
Probab=45.77 E-value=99 Score=21.37 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAAD 50 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ad 50 (61)
+++...++-.+.-+++++......|..++.+-....|..+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666666665555555443
No 54
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=45.39 E-value=88 Score=20.64 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
+.+.....+..+|..++.+....+.++.....+++..++...+
T Consensus 117 ~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 117 QAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777777777766665543
No 55
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=44.99 E-value=58 Score=24.73 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 21 IQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 21 iq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|..+++++...+.+|..|.+||..+++.+
T Consensus 4 ~~elq~e~~~~E~qL~~a~qkl~da~~~~ 32 (428)
T PF00846_consen 4 LEELQEEITQHEQQLVIARQKLKDAEKQY 32 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666667777777777777655
No 56
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.71 E-value=56 Score=18.22 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 21 IQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 21 iq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
=|.+.++|.++......+..+|.++++.-.+-+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~ 45 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELE 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777776554433
No 57
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=44.66 E-value=1.3e+02 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=25.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
|+........++..++.+|..++|+|+.+.-
T Consensus 453 aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~ 483 (518)
T PF10212_consen 453 AEKEKESLEEELKEANQNISRLQDELETTRR 483 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677889999999999999999987653
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.42 E-value=1.4e+02 Score=22.88 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
+...++.++..+..++..+..++...+..+..+..++...+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555544443
No 59
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.32 E-value=77 Score=19.41 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERD 55 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~ 55 (61)
-...|+.|+..++.++...+........++.+.+....+.-.+
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666555555555555555555555555444433
No 60
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=42.97 E-value=1.3e+02 Score=22.04 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
.+..+++..+..+.+.|+++-.+|..++|+-...++=|.
T Consensus 182 kk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLd 220 (323)
T PF08537_consen 182 KKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLD 220 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666665544444444
No 61
>KOG0612|consensus
Probab=40.99 E-value=2.1e+02 Score=24.91 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=36.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhhhHhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATA---TAKLAEASQAADESE 53 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a---~~KLeeaeK~adesE 53 (61)
++.++...++....|.+.+..++++++-++.....+ ..++....+.+++++
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~ 552 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAE 552 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 456677788888888888999999888887765555 555555555555443
No 62
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.82 E-value=60 Score=17.46 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
....++..+++++..+..+.+..+..+......-+..++.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4556677777777777666666655554442333333443
No 63
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=39.83 E-value=1.1e+02 Score=20.15 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
++..+.++|..-|+.|++-.+.|......|+..++.
T Consensus 79 el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~ 114 (201)
T PF12072_consen 79 ELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEE 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455544544444444444444444333
No 64
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.37 E-value=1.5e+02 Score=21.56 Aligned_cols=51 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHhhhHhhhhhh
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLER---SEERLATATAKLAEASQAADESERDWI 57 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~---~eErL~~a~~KLeeaeK~adesER~~~ 57 (61)
.+.++.++..++++|..+++.++. .+-++......+...+|..++.+.-+.
T Consensus 244 ~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 244 LESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777766443 334555556666666666665554433
No 65
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=39.36 E-value=67 Score=17.56 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
...++..+...+++|..+...|.+.+.+
T Consensus 35 ~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 35 LSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777665443
No 66
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=38.66 E-value=56 Score=19.68 Aligned_cols=29 Identities=41% Similarity=0.615 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 17 LNRRIQLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~KLeea 45 (61)
|.+.+...++|.-+-++|+..|-.+|+++
T Consensus 67 Lc~~~~VT~eDIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 67 LCKQFVVTEEDIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp --T-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888875
No 67
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.55 E-value=1.9e+02 Score=23.17 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 17 LNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
+..++..+.+..++..+|+..+..+-+...+++
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433
No 68
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=37.29 E-value=1.7e+02 Score=21.72 Aligned_cols=27 Identities=7% Similarity=0.282 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
+...+..+.+++..+++.++..++||.
T Consensus 411 l~~~i~~l~~~i~~~~~rl~~~e~rl~ 437 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSDSIDATIARYK 437 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544
No 69
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=37.01 E-value=1.1e+02 Score=19.29 Aligned_cols=27 Identities=37% Similarity=0.618 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a 38 (61)
..+.+|+++++.+.+++-+++.+....
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEdrsa~S 34 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSEDRSAAS 34 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467788999999999988888776544
No 70
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.53 E-value=1.1e+02 Score=19.27 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
++++..+..|..|+.-++..-++.++++.....+|-
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666555555444
No 71
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.17 E-value=2e+02 Score=22.13 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
++..+.+++..++.+.+...+.+......++.+++..++.+.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444455555555555554444433
No 72
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=35.95 E-value=49 Score=21.34 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLER 30 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~ 30 (61)
.+.|+..|+.||.+.|.-+++
T Consensus 129 ~~~eL~qLq~rL~qTE~~m~k 149 (152)
T PF15361_consen 129 TDYELAQLQERLAQTERAMEK 149 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655443
No 73
>PRK14139 heat shock protein GrpE; Provisional
Probab=35.87 E-value=1.3e+02 Score=20.03 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
++.++..+..+|..++.+++..++++..+...++-..|..
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~ 69 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRA 69 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777776666666555544
No 74
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=35.30 E-value=1.1e+02 Score=18.90 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
...++..|+..+..+++.++..+..+..+..+.-.
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555444444444444444333
No 75
>PRK14161 heat shock protein GrpE; Provisional
Probab=35.03 E-value=1.3e+02 Score=19.81 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
++..+.++..++..++.+++...+++..+...++-..|.
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR 55 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKR 55 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666665555555544443
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=34.92 E-value=2.7e+02 Score=23.29 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
++.++..+...|+.........+..|.....++.........
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 646 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQ 646 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444333
No 77
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.77 E-value=85 Score=17.44 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
.|..|.-+|.+|+.+..+++..+.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888776653
No 78
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.66 E-value=1.1e+02 Score=18.51 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q psy13152 17 LNRRIQLLEEDLER 30 (61)
Q Consensus 17 L~rkiq~lEeeld~ 30 (61)
+..+++.++..+..
T Consensus 85 l~~~~~~l~~~~~~ 98 (118)
T cd04776 85 IEKRRAELEQQRRD 98 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 79
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=34.41 E-value=47 Score=17.96 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAAL 17 (61)
Q Consensus 6 ~~~~aE~Ev~~L 17 (61)
+...+|+||..|
T Consensus 19 rv~eLEeEV~~L 30 (48)
T PF14077_consen 19 RVSELEEEVRTL 30 (48)
T ss_pred eHHHHHHHHHHH
Confidence 556788888887
No 80
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.35 E-value=91 Score=17.65 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 14 VAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 14 v~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
|..|..++..+|..+.....++.....+++..+..
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555554544444444444433
No 81
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.93 E-value=93 Score=17.59 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 15 AALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 15 ~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
..|..++..++.+++..+..+.....++.+..+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444443
No 82
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.90 E-value=1.1e+02 Score=18.25 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLAT 37 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~ 37 (61)
++.+.++..+..|.+++.-++..+...+..|..
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555443
No 83
>KOG0996|consensus
Probab=33.40 E-value=3e+02 Score=23.93 Aligned_cols=51 Identities=20% Similarity=0.342 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
+++...+.....++.++.+.+|-.--+.++.|...+.++..++|..+...|
T Consensus 376 ~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~ 426 (1293)
T KOG0996|consen 376 KERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARR 426 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666777888888888888888888888888888877777665544
No 84
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=32.82 E-value=1.3e+02 Score=19.09 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy13152 23 LLEEDLERSEE 33 (61)
Q Consensus 23 ~lEeeld~~eE 33 (61)
.+.++++.++.
T Consensus 53 ~I~~~l~~Ae~ 63 (175)
T PRK14472 53 GIQSSIDRAHS 63 (175)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>KOG0250|consensus
Probab=32.74 E-value=3.2e+02 Score=23.38 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
..++++.++..+++.|..++..++.++..|.....++-+........+|
T Consensus 662 ~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~ 710 (1074)
T KOG0250|consen 662 EIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKR 710 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888888877777766666555444443
No 86
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=32.30 E-value=1.5e+02 Score=19.50 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
...+|.++..-...++..|..+..-++.|..-...|+..++..+.-+
T Consensus 66 r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~ 112 (201)
T PF12072_consen 66 RQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKE 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777788888888877777777777777776665543
No 87
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.30 E-value=1.5e+02 Score=24.05 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
.+...++.++..++.|+..||.+++.-.-.-.....|+.+.+.
T Consensus 666 ~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~ 708 (769)
T PF05911_consen 666 TRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEE 708 (769)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHH
Confidence 3455678899999999999999988765555555555554443
No 88
>KOG4657|consensus
Probab=32.00 E-value=1.9e+02 Score=20.53 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATA 40 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~ 40 (61)
-+++..+.+.+|.+.+++|...+-+.+..+
T Consensus 99 q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 99 QSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 346667788899999999999988877764
No 89
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=31.99 E-value=1.3e+02 Score=18.80 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
.++|..|++++..+...|..+...-++.-+..+..-
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i 138 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQELI 138 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888887777766666665555555443
No 90
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.91 E-value=1.9e+02 Score=20.54 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a 38 (61)
.+..+..+|.-||.----+|++++-||.+.
T Consensus 187 ~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 187 NLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555655556666666665544
No 91
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=31.90 E-value=1.5e+02 Score=19.30 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
+..+.+.++...++-++.+-+++...+-.+..+..++...++.
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666655543
No 92
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.31 E-value=1.6e+02 Score=19.49 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKL 42 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KL 42 (61)
++.|.-+...=-|-.+||.|||. .|.|..-.+.|
T Consensus 3 eD~EsklN~AIERnalLE~ELdE-KE~L~~~~QRL 36 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE-KENLREEVQRL 36 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH---
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHH
Confidence 45666666666777788888866 55555554444
No 93
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=31.16 E-value=1.5e+02 Score=21.36 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 13 EVAALNRRIQLLE-EDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 13 Ev~~L~rkiq~lE-eeld~~eErL~~a~~KLeeaeK~ 48 (61)
-|..|.+++.+|. ..||..+.||...+.+++...+.
T Consensus 247 ~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~ 283 (388)
T PF04912_consen 247 ALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEK 283 (388)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888884 46888999998888888776654
No 94
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.89 E-value=1.1e+02 Score=17.70 Aligned_cols=30 Identities=37% Similarity=0.485 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLAT 37 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~ 37 (61)
..+-.++..+..+|..+|..+...++.+..
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777766666543
No 95
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.49 E-value=2.4e+02 Score=21.38 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
+++.++..+...|..++..+-.+...+
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l 89 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDL 89 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444433333333333
No 96
>PRK06798 fliD flagellar capping protein; Validated
Probab=30.43 E-value=2.3e+02 Score=21.10 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
..-++..+..+.+++..+|..+++.+++|-..=..|+
T Consensus 381 ~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale 417 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLE 417 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777777777777777654444444
No 97
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.42 E-value=1.8e+02 Score=19.78 Aligned_cols=9 Identities=56% Similarity=0.608 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy13152 10 AESEVAALN 18 (61)
Q Consensus 10 aE~Ev~~L~ 18 (61)
++..+.++.
T Consensus 85 a~a~l~~~~ 93 (334)
T TIGR00998 85 AEANLAALV 93 (334)
T ss_pred HHHHHHHHH
Confidence 333333333
No 98
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.08 E-value=1.5e+02 Score=18.99 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy13152 21 IQLLEEDLER 30 (61)
Q Consensus 21 iq~lEeeld~ 30 (61)
+..+..+++.
T Consensus 163 i~~lk~el~~ 172 (192)
T PF05529_consen 163 IEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 99
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=29.89 E-value=1.1e+02 Score=19.78 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLE 29 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld 29 (61)
.+.++.++..+..+|+-++++|+
T Consensus 5 ~~~~e~~~~~l~~~i~~~~~~l~ 27 (154)
T PF13015_consen 5 IDEAERKLSDLESKIRELEDDLN 27 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666665555543
No 100
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.81 E-value=1.9e+02 Score=19.81 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
..+..++..|..++..++.+++...+++..+...++-..|..
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777777777766666666555543
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=29.56 E-value=1.4e+02 Score=18.30 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
+...+..+..+++.+-+|+..-......|..+++
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555544
No 102
>PF01517 HDV_ag: Hepatitis delta virus delta antigen; InterPro: IPR002506 The Hepatitis delta virus (HDV) encodes a single protein, the hepatitis delta antigen (HDAg). The central region of this protein has been shown to bind RNA []. Several interactions are also mediated by a coiled-coil region at the N terminus of the protein [].; GO: 0003723 RNA binding, 0042025 host cell nucleus; PDB: 1A92_D 1BY0_A.
Probab=29.12 E-value=1.3e+02 Score=20.34 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEED 27 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEee 27 (61)
..+++++|-++.-..++|.-||++
T Consensus 24 rk~~eeler~lrk~~k~ikkled~ 47 (194)
T PF01517_consen 24 RKKAEELERDLRKAKKKIKKLEDD 47 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445556666666666666666665
No 103
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=28.97 E-value=1.4e+02 Score=20.89 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLER 30 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~ 30 (61)
+--.|..||||++.||++-..
T Consensus 200 lrrQi~klnrRl~~lE~~n~~ 220 (246)
T PF05644_consen 200 LRRQIIKLNRRLQALEEENKE 220 (246)
T ss_pred HHHHHHHHhHHHHHHHHHhHH
Confidence 445788999999999987544
No 104
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=28.85 E-value=1e+02 Score=18.82 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEE 26 (61)
Q Consensus 13 Ev~~L~rkiq~lEe 26 (61)
+|..|..||..|+.
T Consensus 97 ev~~L~~RI~~Le~ 110 (118)
T TIGR01837 97 EIEALSAKIEQLAV 110 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 105
>PF15456 Uds1: Up-regulated During Septation
Probab=28.70 E-value=1.5e+02 Score=18.48 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
+||..|.|.+..+..-++....+|.
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666666555554
No 106
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.56 E-value=1.4e+02 Score=18.01 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy13152 24 LEEDLERSEE 33 (61)
Q Consensus 24 lEeeld~~eE 33 (61)
+.++++.+++
T Consensus 41 I~~~l~~Ae~ 50 (140)
T PRK07353 41 IRTNRAEAKE 50 (140)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 107
>KOG1029|consensus
Probab=28.53 E-value=1.2e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
|.+..++..++.+||-|+++|...+-.+.-++.++.+-++...+.
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q 480 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQ 480 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhH
Confidence 445667788888888888888887777666666666666655553
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.30 E-value=1.5e+02 Score=18.39 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeea 45 (61)
.|.|+.+++-.+..++..-+...+-+.......++.
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666555555544444433
No 109
>PF15205 PLAC9: Placenta-specific protein 9
Probab=28.11 E-value=1.3e+02 Score=17.53 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKL 42 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KL 42 (61)
.-.+++.|+-.+|+.++++-|.|..-..-|
T Consensus 19 rhmav~~RLdviEe~veKTVEhLeaEvk~L 48 (74)
T PF15205_consen 19 RHMAVHSRLDVIEETVEKTVEHLEAEVKGL 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999988887655444
No 110
>PRK00106 hypothetical protein; Provisional
Probab=28.07 E-value=2.9e+02 Score=21.46 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 20 RIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 20 kiq~lEeeld~~eErL~~a~~KLe 43 (61)
+++..|+.|++-++.|..-...|+
T Consensus 98 rL~qrE~rL~qREE~LekRee~Le 121 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLS 121 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333
No 111
>smart00338 BRLZ basic region leucin zipper.
Probab=27.87 E-value=1.1e+02 Score=16.39 Aligned_cols=8 Identities=38% Similarity=0.812 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy13152 17 LNRRIQLL 24 (61)
Q Consensus 17 L~rkiq~l 24 (61)
|..++..+
T Consensus 31 Le~~~~~L 38 (65)
T smart00338 31 LERKVEQL 38 (65)
T ss_pred HHHHHHHH
Confidence 33333333
No 112
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.84 E-value=1.8e+02 Score=18.94 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 15 AALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 15 ~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
..+.++|+.|..+.....+++...+.+|..+++....
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~ 61 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRT 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888877776543
No 113
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=27.69 E-value=1.7e+02 Score=18.76 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy13152 24 LEEDLERS 31 (61)
Q Consensus 24 lEeeld~~ 31 (61)
+...++.+
T Consensus 60 I~~~l~~A 67 (184)
T CHL00019 60 ILNTIRNS 67 (184)
T ss_pred HHHHHHHH
Confidence 33333333
No 114
>PRK04863 mukB cell division protein MukB; Provisional
Probab=27.23 E-value=4.3e+02 Score=23.18 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
..++.....+...+...+..+...+..+..+...+....+...+.+.
T Consensus 995 e~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eq 1041 (1486)
T PRK04863 995 EQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQ 1041 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555555555544444444444444444444433
No 115
>KOG4001|consensus
Probab=26.94 E-value=2.3e+02 Score=20.00 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
++-++|.+-..+.+++..+|++-...+...+....|++..++.-
T Consensus 179 KALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~ 222 (259)
T KOG4001|consen 179 KALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRS 222 (259)
T ss_pred HHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456777777777788777777777777777777777666543
No 116
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.65 E-value=1.8e+02 Score=18.70 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
+...++.+|..+.+++..++.+++.+.+.
T Consensus 164 k~~~~~~ei~~~~~~~~~~~~~~~~is~~ 192 (236)
T PF09325_consen 164 KVEQAENEIEEAERRVEQAKDEFEEISEN 192 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 117
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.38 E-value=2.4e+02 Score=21.67 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSE 32 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~e 32 (61)
...++++..+.+++..++++.+..+
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~ 120 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELE 120 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444433
No 118
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.37 E-value=2.3e+02 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
.|..++|+|+..+...+..+..+++..+..
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777765554
No 119
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=26.24 E-value=1.4e+02 Score=17.33 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
-+.-+++|+..+++.++.....+......+.....
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666665555555544433
No 120
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=26.18 E-value=1.8e+02 Score=18.54 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
...++..........+..+..++..|
T Consensus 58 I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (167)
T PRK08475 58 ISKRLEEIQEKLKESKEKKEDALKKL 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=2.3e+02 Score=22.80 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy13152 10 AESEVAALNR 19 (61)
Q Consensus 10 aE~Ev~~L~r 19 (61)
++.++..|.+
T Consensus 434 l~~e~~~L~~ 443 (652)
T COG2433 434 LEEENSELKR 443 (652)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 122
>PRK14148 heat shock protein GrpE; Provisional
Probab=25.68 E-value=2.2e+02 Score=19.21 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
+.++..++.++..++.+++...+++..+....+-..|..
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888888877777777665544
No 123
>PRK12705 hypothetical protein; Provisional
Probab=25.46 E-value=3.2e+02 Score=21.09 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
++....+|+.+-|+.|++-.+.|......|...++
T Consensus 78 ~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~ 112 (508)
T PRK12705 78 ELQREEERLVQKEEQLDARAEKLDNLENQLEEREK 112 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555566665555555555555544443
No 124
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=25.15 E-value=1.2e+02 Score=16.03 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDL 28 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeel 28 (61)
+++..+..-++||..++..|
T Consensus 36 ~a~~~l~es~~ki~~L~~~L 55 (57)
T smart00742 36 EAQSMLRESNQKLDLLKEEL 55 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444433
No 125
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=22 Score=22.62 Aligned_cols=49 Identities=31% Similarity=0.385 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhH-hhhHhhhhhhhhcC
Q psy13152 10 AESEVAALNRRIQ---LLEEDLERSEERLATATAKLAEASQ-AADESERDWITRGQ 61 (61)
Q Consensus 10 aE~Ev~~L~rkiq---~lEeeld~~eErL~~a~~KLeeaeK-~adesER~~~~~~~ 61 (61)
.|+|+..|..-++ ++|-||.+.-. .-...|-...- ..-.-.||.+|+||
T Consensus 49 teeei~~ir~~i~~~~~vegDLr~~v~---~dIkRl~~i~~YRGiRH~~GLpVRGQ 101 (121)
T COG0099 49 TEEEIERLRDAIQNKYLVEGDLRREVR---MDIKRLMKIGCYRGIRHRRGLPVRGQ 101 (121)
T ss_pred CHHHHHHHHHHHHhcCeehhHHHHHHH---HHHHHHHHhhhhhhhhhhcCCCCCCc
Confidence 3566666666665 56777755211 11222221111 22334678889998
No 126
>KOG4421|consensus
Probab=24.76 E-value=3.2e+02 Score=21.27 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATAT 39 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~ 39 (61)
+......-.++.++...+..+|++|+.+.-.....+
T Consensus 583 ee~lk~~~del~s~~~~~h~ledeles~r~gye~qi 618 (637)
T KOG4421|consen 583 EEELKAKDDELASLGGALHMLEDELESTRIGYEEQI 618 (637)
T ss_pred HHHHHHhHHHHHHhhhHHHHHHHHHHHHhhhHHHHH
Confidence 344455667888999999999999987654433333
No 127
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.71 E-value=1.5e+02 Score=18.95 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 17 LNRRIQLLEEDLERSEERLATATA 40 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~ 40 (61)
|+|++.-+++|++.....+.....
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~ 94 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKS 94 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777666555544433
No 128
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=24.60 E-value=2.4e+02 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 20 RIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 20 kiq~lEeeld~~eErL~~a~~KLe 43 (61)
|+++++.++...+.++..+..+.+
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe 183 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFE 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 129
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.59 E-value=2.5e+02 Score=19.66 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=18.9
Q ss_pred HhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRR-----IQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rk-----iq~lEeeld~~eErL~~a~~KLee 44 (61)
||.-...++.-+..++.+ +.-++++++..+.+|..+..+|..
T Consensus 149 an~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 149 NQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333 334444444444444444444443
No 130
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.54 E-value=1.6e+02 Score=17.24 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy13152 18 NRRIQLLEEDLER 30 (61)
Q Consensus 18 ~rkiq~lEeeld~ 30 (61)
..++..++.+++.
T Consensus 69 e~~~e~le~~i~~ 81 (105)
T cd00632 69 KERLETIELRIKR 81 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 131
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=24.18 E-value=1.5e+02 Score=17.00 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAK 41 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~K 41 (61)
.++..|..+|..++.++.....++..+...
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666665555555444433
No 132
>PF11053 DNA_Packaging: Terminase DNA packaging enzyme; InterPro: IPR020342 This entry represents the DNA-packaging protein Gp16 found in Enterobacteria phage T4 (Bacteriophage T4). Double-stranded DNA packaging in bacteriophages is driven by a molecular motor. The phage T4 motor is composed of the small terminase protein, Gpl6 (18kDa), the large terminase protein, Gp17 (70kDa), and the dodecameric portal protein Gp20 (61kDa). Gp16 is involved in the recognition of the viral DNA substrate, the very first step in the DNA packaging pathway, and stimulates the ATPase and packaging activities associated with Gp17 []. Gp16 modulates the activity of Gp17 [] and is required to translocate phage T4 DNA into the head []. ; PDB: 3TXS_D 3TXQ_I.
Probab=24.11 E-value=1.9e+02 Score=19.12 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh------hHhhhhhhhhcC
Q psy13152 19 RRIQLLEEDLERSEERLATATAKLAEASQAA------DESERDWITRGQ 61 (61)
Q Consensus 19 rkiq~lEeeld~~eErL~~a~~KLeeaeK~a------desER~~~~~~~ 61 (61)
.|-.-++.|+..+...|--.+.++-++-+-+ .++=|.+-|||+
T Consensus 42 ~r~~D~e~DY~~~R~nlh~q~q~~~~a~~~aLe~Ak~SesPRa~EVf~~ 90 (153)
T PF11053_consen 42 NRTDDLEDDYEYVRDNLHFQQQMGQDAAKIALEVAKNSESPRAYEVFAQ 90 (153)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 3455678888888888888888887776622 445589988874
No 133
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.06 E-value=1.4e+02 Score=16.47 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
+....+..+..+.+++..+|......+........+|..
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~ 45 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEK 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444444444444443
No 134
>PRK08724 fliD flagellar capping protein; Validated
Probab=24.06 E-value=3.8e+02 Score=21.60 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
....++..|++||..+|+.|-.--..|..++.+|.
T Consensus 628 ~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMn 662 (673)
T PRK08724 628 RLNDDQVALDRRMESLEKRTHAKFAAMQDATGKMQ 662 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444444555555554
No 135
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.96 E-value=2e+02 Score=18.25 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL 35 (61)
++..........+..+..++.+|
T Consensus 55 ~l~~Ae~~~~eA~~~~~e~e~~l 77 (173)
T PRK13460 55 DINKASELRLEAEALLKDYEARL 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 136
>KOG2264|consensus
Probab=23.86 E-value=4.1e+02 Score=21.80 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
.+..++.+||..++-||..+-..+.+.+..|.......+.++...
T Consensus 100 ~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 100 VKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 345566677777777777666666666655555544555444443
No 137
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=23.61 E-value=2.1e+02 Score=18.44 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
.++.-.+|+.|.-+-..++..++.+..++......|..+.+.+..+-|
T Consensus 69 le~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r 116 (152)
T PF07321_consen 69 LEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARR 116 (152)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888888888888888888888888888887777765544
No 138
>PRK07737 fliD flagellar capping protein; Validated
Probab=23.58 E-value=3.3e+02 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
...+..+.++|..+++.++..++||
T Consensus 447 ~~~i~~l~~~i~~~~~rl~~~e~ry 471 (501)
T PRK07737 447 GKDLNQIETQIDRFQDRLKQIEDRY 471 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 139
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=23.58 E-value=1.2e+02 Score=18.93 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13152 24 LEEDLERSEERLATATAKLA 43 (61)
Q Consensus 24 lEeeld~~eErL~~a~~KLe 43 (61)
+...|+++.++|+.+.+||.
T Consensus 48 Ls~kL~ktnerLaevstkLl 67 (111)
T PF12001_consen 48 LSNKLNKTNERLAEVSTKLL 67 (111)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 56788888888888888886
No 140
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=23.51 E-value=2.3e+02 Score=18.69 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 19 RRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 19 rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
.|+..++.++..++.+...+..+.+..++..
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~ 173 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELI 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666555533
No 141
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=23.35 E-value=1.3e+02 Score=17.52 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQ 22 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq 22 (61)
..+...+|.+|..|+++++
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~ 25 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQ 25 (88)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3456678888888888776
No 142
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.30 E-value=2.6e+02 Score=19.36 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSE 32 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~e 32 (61)
++..+...+..++..+..++
T Consensus 152 ~i~~~~~~i~~~~~~l~~~~ 171 (423)
T TIGR01843 152 QIKQLEAELAGLQAQLQALR 171 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 143
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.13 E-value=3.2e+02 Score=20.33 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
...+..|.++|..+++++.+.+.++......+.-...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777777666665555544433
No 144
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.12 E-value=1.6e+02 Score=16.87 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 16 ALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 16 ~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
+|..=|..++++++.-.-.+......+.....+.+.
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~ 49 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGR 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCh
Confidence 455556666666666666555554444444444333
No 145
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=22.40 E-value=3.6e+02 Score=20.59 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
.++....++|..-++.|++-.+.|......|+
T Consensus 76 ~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le 107 (514)
T TIGR03319 76 NELQRLERRLLQREETLDRKMESLDKKEENLE 107 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 146
>PLN02678 seryl-tRNA synthetase
Probab=22.39 E-value=2.8e+02 Score=20.95 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLAT 37 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~ 37 (61)
+-+++..|..+|..+|.+++..++.+..
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666665555543
No 147
>PRK02224 chromosome segregation protein; Provisional
Probab=22.38 E-value=3.9e+02 Score=21.00 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~ 31 (61)
++..+.+++..++.++.+.
T Consensus 573 ~~~~~~~~~~~l~~~~~~l 591 (880)
T PRK02224 573 EVAELNSKLAELKERIESL 591 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 148
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.37 E-value=1.2e+02 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLE 29 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld 29 (61)
+|..|+++|+.|+.+++
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 55555555555555554
No 149
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.36 E-value=4.6e+02 Score=21.84 Aligned_cols=38 Identities=39% Similarity=0.519 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
...++..+++.+..++..+++...++.....++...+.
T Consensus 395 ~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 432 (1163)
T COG1196 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555444444444333
No 150
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=22.14 E-value=28 Score=20.85 Aligned_cols=48 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhH-hhhHhhhhhhhhcC
Q psy13152 11 ESEVAALNRRIQL---LEEDLERSEERLATATAKLAEASQ-AADESERDWITRGQ 61 (61)
Q Consensus 11 E~Ev~~L~rkiq~---lEeeld~~eErL~~a~~KLeeaeK-~adesER~~~~~~~ 61 (61)
++++..|..-|.. ++.+|.+.... -...|-...- ..-.-.+|.||+||
T Consensus 48 ~~~i~~l~~~i~~~~~i~~~L~~~~~~---~i~rl~~i~syRG~RH~~gLpvRGQ 99 (107)
T PF00416_consen 48 DEQIDKLRKIIEKNHLIENDLKRQVRE---NIKRLKKIKSYRGIRHRKGLPVRGQ 99 (107)
T ss_dssp HHHHHHHHHHHHTHSTCHHHHHHHHHH---HHHHHHHHTTHHHHHHHHTSBSSSS
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHH---HHHHHHHHHHhhcchhhCCCCCCCC
Confidence 3455666555555 77777664322 1222222111 12333467788887
No 151
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.99 E-value=2.2e+02 Score=18.06 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 17 LNRRIQLLEEDLERSEERLATATA 40 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~ 40 (61)
+..|-..+.++++.++.....+..
T Consensus 35 l~~R~~~I~~~l~~A~~~~~ea~~ 58 (161)
T COG0711 35 LDERQAKIADDLAEAERLKEEAQA 58 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444433
No 152
>KOG0500|consensus
Probab=21.96 E-value=3.7e+02 Score=21.18 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
+++...+|.++..++-|+..+.+++...+..+.+-...++-.-+
T Consensus 460 E~~~~~Le~~~~~l~~Rl~~i~~e~~~~~~km~qr~~~le~~~~ 503 (536)
T KOG0500|consen 460 EKRDESLENEVVLLQLRLARILDEYHSSQQKMKQRLSVLEKQLK 503 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhh
Confidence 34445578899999999999999999888888777777764433
No 153
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=21.89 E-value=4.1e+02 Score=21.09 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
-+...+..++++|..++..++..++||.
T Consensus 604 ~l~~~i~~l~~~i~~~e~rl~~~e~rl~ 631 (661)
T PRK06664 604 GLDERIADNNKKIEEYEKKLESKERKLK 631 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666555555555555554
No 154
>KOG1853|consensus
Probab=21.67 E-value=3.3e+02 Score=19.90 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSEE---RLATATAKLAEA 45 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eE---rL~~a~~KLeea 45 (61)
.-...-+.+.+||+|+.+... .|..-..+|+.+
T Consensus 85 q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 85 QRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334556667777766544 343334444433
No 155
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.57 E-value=1.6e+02 Score=16.24 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeea 45 (61)
+.-|..||.-+..-..++++.+..+.....+|...
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444555555544444444443
No 156
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.45 E-value=2.3e+02 Score=18.09 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
...++....+.....+..+..++.+|.
T Consensus 63 I~~~l~~Ae~~~~eA~~~l~e~e~~L~ 89 (184)
T PRK13455 63 IRSELEEARALREEAQTLLASYERKQR 89 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 157
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.40 E-value=1.4e+02 Score=23.09 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
.++..++ +|..|..+|+..+.++.....++...++
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 3444454 8888888888888877766666655554
No 158
>KOG0994|consensus
Probab=21.15 E-value=6e+02 Score=22.73 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 2 IATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 2 ~a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
+|.+....+-..+...+..|-.++++...++..+..+.+.+.+.++...+
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 159
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.11 E-value=2.2e+02 Score=17.66 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLL 24 (61)
Q Consensus 13 Ev~~L~rkiq~l 24 (61)
++..|..++..+
T Consensus 113 ~l~~L~~~i~~L 124 (134)
T PF07047_consen 113 RLEELEERIEEL 124 (134)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 160
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.10 E-value=1.8e+02 Score=16.59 Aligned_cols=23 Identities=43% Similarity=0.679 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL 35 (61)
.|..|+-||.++..+.++.+-.+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888776554
No 161
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.00 E-value=3.5e+02 Score=19.87 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 17 LNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
|+..|..++......++.|.....+|.+......+.+
T Consensus 363 l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 399 (562)
T PHA02562 363 VKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399 (562)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 162
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.99 E-value=3.6e+02 Score=20.06 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
.+....+.++..++.||...|+.|-+---.|..++.++.
T Consensus 413 ~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mn 451 (462)
T PRK08032 413 KTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLN 451 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777666666666666665
No 163
>KOG0161|consensus
Probab=20.99 E-value=6.1e+02 Score=23.19 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
....+++..+..+.++++.+|-..-..+.+....+..|++++-+
T Consensus 1498 ~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1498 QEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888877777777777664
No 164
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=20.96 E-value=3.6e+02 Score=20.14 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=27.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 2 IATLLSRHAESEVAALNRRIQLL---------EEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 2 ~a~~~~~~aE~Ev~~L~rkiq~l---------Eeeld~~eErL~~a~~KLeeaeK~a 49 (61)
+++.|...++.++..+.+++-.+ ..+++.....+.....+++-.+...
T Consensus 167 L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 223 (475)
T PF10359_consen 167 LIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENML 223 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776663 2333334444444444444444433
No 165
>PRK03918 chromosome segregation protein; Provisional
Probab=20.89 E-value=4.1e+02 Score=20.74 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLAT 37 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~ 37 (61)
.++..+...+..++..+...++.+..
T Consensus 200 ~~~~~l~~ei~~l~~e~~~l~~~~~~ 225 (880)
T PRK03918 200 KELEEVLREINEISSELPELREELEK 225 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 166
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.87 E-value=2.3e+02 Score=17.68 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
..++.+|..+...+..+..+++.....+
T Consensus 148 ~~l~~~i~~~e~~~~~~~~~~~~i~~~~ 175 (218)
T cd07596 148 EELEEELEEAESALEEARKRYEEISERL 175 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 167
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=20.84 E-value=33 Score=21.37 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLE 29 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld 29 (61)
.....+..++.++..+-+.+.
T Consensus 14 ~v~~~~~~i~~~l~~~~~~~~ 34 (138)
T PF06009_consen 14 NVLDRLDPISENLENWSENLG 34 (138)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333
No 168
>PRK09925 leu operon leader peptide; Provisional
Probab=20.84 E-value=30 Score=16.60 Aligned_cols=9 Identities=33% Similarity=0.246 Sum_probs=7.1
Q ss_pred hhhhhhhhc
Q psy13152 52 SERDWITRG 60 (61)
Q Consensus 52 sER~~~~~~ 60 (61)
+-||++|.|
T Consensus 17 s~rgr~v~g 25 (28)
T PRK09925 17 SLRGRRVSG 25 (28)
T ss_pred hhcCccccc
Confidence 458888887
No 169
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.45 E-value=2.8e+02 Score=18.61 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
..+..++..|...+..++.-++..+..+.....+++..++
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666555555555555555555555555444443
No 170
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=20.37 E-value=3.6e+02 Score=19.85 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL 35 (61)
++..+..+|..++..+...++.+
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 171
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=20.07 E-value=2.4e+02 Score=17.79 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a 38 (61)
|......++....+.-...+.-+..++.+|..+
T Consensus 42 R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A 74 (167)
T PRK14475 42 YAAKIQAELDEAQRLREEAQALLADVKAEREEA 74 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444
Done!