Query psy13152
Match_columns 61
No_of_seqs 109 out of 188
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:55:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ic2_A Tropomyosin alpha chain 99.2 6.1E-11 2.1E-15 68.7 7.4 49 3-51 32-80 (81)
2 3u1c_A Tropomyosin alpha-1 cha 99.2 2E-10 7E-15 69.0 8.3 55 3-57 35-89 (101)
3 2b9c_A Striated-muscle alpha t 99.1 3.9E-12 1.3E-16 81.2 -0.2 43 17-59 1-43 (147)
4 3u59_A Tropomyosin beta chain; 99.0 1.9E-09 6.4E-14 64.5 8.5 56 3-58 35-90 (101)
5 3u59_A Tropomyosin beta chain; 97.4 9.3E-05 3.2E-09 43.9 2.3 25 3-27 77-101 (101)
6 3u1c_A Tropomyosin alpha-1 cha 97.1 0.0003 1E-08 41.9 2.8 25 3-27 77-101 (101)
7 3azd_A Short alpha-tropomyosin 96.9 0.00027 9.4E-09 35.6 1.1 33 10-42 2-34 (37)
8 1ic2_A Tropomyosin alpha chain 96.4 0.013 4.3E-07 33.3 5.9 38 16-53 3-40 (81)
9 2b9c_A Striated-muscle alpha t 95.3 0.18 6.3E-06 31.6 8.4 47 3-49 64-110 (147)
10 2efr_A General control protein 94.3 0.5 1.7E-05 30.0 8.5 56 3-58 40-102 (155)
11 2z5i_A TM, general control pro 91.2 0.92 3.2E-05 23.9 6.8 40 5-44 5-44 (52)
12 3mtu_A Tropomyosin alpha-1 cha 88.0 2.3 7.7E-05 23.7 6.5 41 13-53 3-50 (75)
13 2ic6_A Nucleocapsid protein; h 87.2 1.5 5E-05 25.2 4.7 29 21-49 7-35 (78)
14 2k48_A Nucleoprotein; viral pr 87.1 1.3 4.6E-05 26.7 4.7 29 21-49 37-65 (107)
15 2efr_A General control protein 87.1 4 0.00014 25.8 7.2 35 4-38 90-124 (155)
16 4fi5_A Nucleoprotein; structur 85.3 1.9 6.4E-05 26.3 4.7 29 21-49 24-52 (113)
17 2ic9_A Nucleocapsid protein; h 84.3 2.3 7.9E-05 25.2 4.7 29 21-49 7-35 (96)
18 1jcd_A Major outer membrane li 82.7 3.8 0.00013 21.6 7.3 47 4-50 3-49 (52)
19 3mud_A DNA repair protein XRCC 80.4 6.5 0.00022 25.4 6.1 36 9-44 132-167 (175)
20 3swy_A Cyclic nucleotide-gated 77.7 5.6 0.00019 20.5 6.7 42 3-44 3-44 (46)
21 1a92_A Delta antigen; leucine 74.6 6.9 0.00024 20.6 4.1 25 3-27 12-36 (50)
22 3swf_A CGMP-gated cation chann 74.3 9.5 0.00033 21.5 6.8 46 3-48 5-50 (74)
23 2akf_A Coronin-1A; coiled coil 72.1 6.6 0.00023 18.7 4.8 27 9-35 3-29 (32)
24 3na7_A HP0958; flagellar bioge 72.0 18 0.0006 23.6 7.2 24 10-33 95-118 (256)
25 1c1g_A Tropomyosin; contractIl 71.2 14 0.00049 22.2 8.3 35 9-43 80-114 (284)
26 3na7_A HP0958; flagellar bioge 71.2 19 0.00063 23.5 8.0 41 5-45 104-144 (256)
27 1l8d_A DNA double-strand break 70.7 12 0.00041 21.2 6.3 42 20-61 11-55 (112)
28 3pp5_A BRK1, protein brick1; t 70.5 11 0.00037 21.2 4.6 28 9-36 42-69 (73)
29 3oja_B Anopheles plasmodium-re 69.5 25 0.00085 24.7 7.3 48 12-59 544-591 (597)
30 2l5g_B Putative uncharacterize 69.0 9.7 0.00033 19.4 5.5 33 17-49 7-39 (42)
31 3p8c_E Probable protein brick1 67.0 13 0.00044 21.0 4.4 26 10-35 43-68 (75)
32 4gif_A Polycystic kidney disea 65.2 12 0.00042 19.2 5.7 37 12-48 7-43 (45)
33 3ljm_A Coil Ser L9C; de novo d 63.5 10 0.00036 17.8 4.4 23 7-29 3-25 (31)
34 3o0z_A RHO-associated protein 63.0 27 0.00092 22.3 7.6 32 8-39 86-117 (168)
35 3vkg_A Dynein heavy chain, cyt 62.4 40 0.0014 30.1 8.3 22 10-31 2026-2047(3245)
36 2i1j_A Moesin; FERM, coiled-co 56.9 21 0.00074 26.1 5.2 38 6-43 329-366 (575)
37 1uo4_A General control protein 56.2 16 0.00056 17.7 4.1 28 6-33 2-29 (34)
38 3vkg_A Dynein heavy chain, cyt 55.7 59 0.002 29.1 8.2 26 4-29 2027-2052(3245)
39 2v66_B Nuclear distribution pr 55.5 31 0.001 20.6 8.0 37 22-58 38-74 (111)
40 3hrn_A Transient receptor pote 55.5 24 0.00082 19.4 7.0 41 12-52 6-46 (64)
41 2lw1_A ABC transporter ATP-bin 55.0 25 0.00086 19.5 7.0 47 6-52 23-75 (89)
42 4etp_A Kinesin-like protein KA 52.5 51 0.0017 23.1 6.4 39 8-46 6-44 (403)
43 1jcd_A Major outer membrane li 50.9 25 0.00087 18.3 5.3 22 14-35 6-27 (52)
44 3trt_A Vimentin; cytoskeleton, 50.4 28 0.00094 18.6 4.8 19 11-29 55-73 (77)
45 3te3_A Polycystic kidney disea 49.4 24 0.00081 17.5 3.4 32 12-43 7-38 (39)
46 2v71_A Nuclear distribution pr 49.1 51 0.0017 21.3 8.0 19 40-58 109-127 (189)
47 2yko_A LINE-1 ORF1P; RNA-bindi 48.6 58 0.002 21.8 6.6 40 4-43 5-44 (233)
48 1t3j_A Mitofusin 1; coiled coi 47.8 36 0.0012 19.9 4.3 26 7-32 49-74 (96)
49 3tnu_B Keratin, type II cytosk 46.7 43 0.0015 19.7 6.6 25 10-34 34-58 (129)
50 3tnu_A Keratin, type I cytoske 46.4 44 0.0015 19.7 5.7 22 10-31 36-57 (131)
51 1fxk_A Prefoldin; archaeal pro 43.4 41 0.0014 18.6 5.3 19 17-35 70-88 (107)
52 1kd8_B GABH BLL, GCN4 acid bas 43.4 30 0.001 17.0 5.2 32 6-37 2-33 (36)
53 1kd8_A GABH AIV, GCN4 acid bas 43.0 30 0.001 16.9 4.7 31 6-36 2-32 (36)
54 2zqm_A Prefoldin beta subunit 42.6 44 0.0015 18.7 6.0 30 17-46 75-104 (117)
55 3cve_A Homer protein homolog 1 42.3 43 0.0015 18.5 7.6 31 4-34 6-36 (72)
56 3cvf_A Homer-3, homer protein 42.0 46 0.0016 18.7 7.2 30 5-34 13-42 (79)
57 2wq1_A General control protein 41.4 31 0.0011 16.6 4.7 28 6-33 1-28 (33)
58 2wg5_A General control protein 40.1 34 0.0012 19.8 3.4 26 6-31 8-33 (109)
59 3mq7_A Bone marrow stromal ant 39.9 63 0.0021 19.7 6.9 37 11-47 63-99 (121)
60 1zme_C Proline utilization tra 37.5 42 0.0014 17.0 3.2 20 14-33 46-65 (70)
61 1yke_B RNA polymerase II holoe 36.0 76 0.0026 19.5 5.5 37 18-54 91-127 (151)
62 3m48_A General control protein 35.9 39 0.0014 16.2 3.7 27 7-33 2-28 (33)
63 1gl2_D Syntaxin 8, vesicle tra 35.4 48 0.0017 17.1 5.5 36 9-44 27-62 (65)
64 3c3f_A Alpha/beta peptide with 35.2 41 0.0014 16.2 4.7 29 6-34 2-30 (34)
65 1fxk_C Protein (prefoldin); ar 35.0 66 0.0023 18.5 7.6 38 10-47 93-130 (133)
66 1ykh_B RNA polymerase II holoe 34.9 74 0.0025 19.0 5.5 37 18-54 91-127 (132)
67 3q0x_A Centriole protein; cent 32.8 1.1E+02 0.0037 20.3 7.7 43 10-52 169-211 (228)
68 2k48_A Nucleoprotein; viral pr 32.6 81 0.0028 18.8 5.5 32 12-43 35-66 (107)
69 2bni_A General control protein 32.1 48 0.0016 16.0 4.1 29 6-34 2-30 (34)
70 3err_A Fusion protein of micro 32.1 1.4E+02 0.005 21.7 6.2 36 3-38 171-206 (536)
71 3hnw_A Uncharacterized protein 31.8 87 0.003 18.9 8.1 38 12-49 75-112 (138)
72 2yko_A LINE-1 ORF1P; RNA-bindi 31.7 96 0.0033 20.7 4.9 33 15-47 2-34 (233)
73 1aq5_A Matrilin-1, CMP, cartil 31.6 57 0.002 16.7 4.3 8 13-20 24-31 (47)
74 1joc_A EEA1, early endosomal a 31.5 81 0.0028 18.5 6.7 28 6-33 12-39 (125)
75 3c3g_A Alpha/beta peptide with 31.4 49 0.0017 15.9 4.7 30 6-35 1-30 (33)
76 2ret_B EPSJ; general secretion 31.3 62 0.0021 19.7 3.7 30 2-31 6-35 (175)
77 2wuj_A Septum site-determining 31.2 58 0.002 16.7 3.6 24 10-33 32-55 (57)
78 4etp_A Kinesin-like protein KA 30.2 1.4E+02 0.0048 20.8 6.8 37 6-42 11-47 (403)
79 3v1a_A Computational design, M 29.6 36 0.0012 17.5 2.0 20 11-30 26-45 (48)
80 2pnv_A Small conductance calci 29.6 59 0.002 16.3 5.9 20 15-34 19-38 (43)
81 1rtm_1 Mannose-binding protein 29.3 82 0.0028 17.9 3.8 15 14-28 6-20 (149)
82 3i00_A HIP-I, huntingtin-inter 29.3 94 0.0032 18.5 6.1 25 10-34 38-62 (120)
83 3nje_A General secretion pathw 28.5 42 0.0014 21.4 2.6 29 3-31 10-38 (211)
84 2efl_A Formin-binding protein 28.4 1.1E+02 0.0039 19.2 7.4 39 9-47 120-158 (305)
85 3kin_B Kinesin heavy chain; mo 28.4 92 0.0032 18.1 4.4 21 10-30 94-114 (117)
86 3q8t_A Beclin-1; autophagy, AT 28.3 86 0.0029 17.8 5.7 35 13-47 61-95 (96)
87 3mq9_A Bone marrow stromal ant 28.3 98 0.0034 21.1 4.6 30 10-39 434-463 (471)
88 3m91_A Proteasome-associated A 28.2 68 0.0023 16.5 6.7 39 6-44 10-48 (51)
89 1sfc_D Protein (SNAP-25B), pro 28.1 81 0.0028 17.4 5.8 38 8-45 46-83 (87)
90 1n7s_D SNAP-25A; neuronal snar 27.2 71 0.0024 16.5 6.1 36 8-43 27-62 (66)
91 3gwk_C SAG1039, putative uncha 27.0 77 0.0026 16.8 6.6 42 13-54 56-97 (98)
92 3zwh_Q Myosin-9; Ca-binding pr 26.4 64 0.0022 16.3 2.6 19 3-21 11-29 (45)
93 3mq9_A Bone marrow stromal ant 26.2 1.6E+02 0.0054 20.1 6.3 22 9-30 415-436 (471)
94 1lwu_C Fibrinogen gamma chain; 25.9 1.6E+02 0.0056 20.2 7.6 31 11-41 18-48 (323)
95 4emc_A Monopolin complex subun 25.7 1.4E+02 0.0048 19.4 7.2 27 10-36 39-65 (190)
96 1l4a_D S-SNAP25 fusion protein 25.0 96 0.0033 17.2 5.4 38 7-44 46-83 (87)
97 1gu4_A CAAT/enhancer binding p 24.9 95 0.0033 17.1 4.5 26 6-31 44-69 (78)
98 2r2v_A GCN4 leucine zipper; co 24.9 68 0.0023 15.4 4.9 30 6-35 2-31 (34)
99 2nps_D Syntaxin-6; vesicle fus 24.4 93 0.0032 16.8 7.1 41 8-48 36-76 (82)
100 1hjb_A Ccaat/enhancer binding 23.6 1.1E+02 0.0037 17.3 5.3 31 5-35 43-73 (87)
101 2l2l_B Methyl-CPG-binding doma 23.4 76 0.0026 15.4 3.6 23 24-46 8-30 (36)
102 3p8c_D Wiskott-aldrich syndrom 22.7 1.9E+02 0.0063 19.7 5.7 35 2-36 47-81 (279)
103 4e40_A Putative uncharacterize 22.7 1.8E+02 0.0062 19.6 6.8 40 7-46 202-241 (252)
104 1wt6_A Myotonin-protein kinase 22.3 1.2E+02 0.004 17.2 5.3 30 22-51 27-56 (81)
105 3viq_B Mating-type switching p 21.6 1.2E+02 0.0042 17.2 3.5 25 8-32 4-28 (85)
106 3a7p_A Autophagy protein 16; c 21.5 1.6E+02 0.0054 18.5 7.6 30 18-47 95-124 (152)
107 1lwu_C Fibrinogen gamma chain; 21.2 2.1E+02 0.0071 19.7 7.3 49 5-53 5-53 (323)
108 2oxj_A Hybrid alpha/beta pepti 20.8 86 0.0029 15.1 4.7 28 6-33 2-29 (34)
109 2ocy_A RAB guanine nucleotide 20.5 1.7E+02 0.0057 18.3 7.2 43 3-45 99-141 (154)
110 1ca9_A TRAF2, protein (TNF rec 20.5 1.5E+02 0.0052 17.8 4.6 34 14-47 5-38 (192)
No 1
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=99.21 E-value=6.1e-11 Score=68.74 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=45.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
++.++.++|.+|.+|+|||+++|++||+++++|..++.+|++++|.+++
T Consensus 32 ~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~ 80 (81)
T 1ic2_A 32 AEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATD 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC-
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678889999999999999999999999999999999999999999875
No 2
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=99.17 E-value=2e-10 Score=69.05 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=51.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWI 57 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~ 57 (61)
++.++.++|.+|.+|+|||+++|++||+++++|..++.+|+++++.++++|..+-
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~ 89 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVA 89 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999998887653
No 3
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.14 E-value=3.9e-12 Score=81.18 Aligned_cols=43 Identities=63% Similarity=0.805 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhhh
Q psy13152 17 LNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITR 59 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~~ 59 (61)
|+|||+++|++|+++++||.+++.||++++|++|+++|||+|.
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~l 43 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI 43 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999986
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=99.03 E-value=1.9e-09 Score=64.51 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=51.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWIT 58 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~ 58 (61)
++.++.+++.+|.+|+|||+++|+++|.++++|..++.+|+.+++.++++|..+..
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999876543
No 5
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.36 E-value=9.3e-05 Score=43.88 Aligned_cols=25 Identities=60% Similarity=0.755 Sum_probs=21.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEED 27 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEee 27 (61)
++..++.+|.+|++||||||++|++
T Consensus 77 ~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 77 AEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4567788999999999999999874
No 6
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.13 E-value=0.0003 Score=41.88 Aligned_cols=25 Identities=64% Similarity=0.745 Sum_probs=21.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEED 27 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEee 27 (61)
+...++.+|.+|.+|+||||+||++
T Consensus 77 ~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 77 AEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4566788999999999999999974
No 7
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=96.90 E-value=0.00027 Score=35.63 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKL 42 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KL 42 (61)
..+.+.++++||+.++.++|.+++++..++.+|
T Consensus 2 g~~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788999999999999999999998887766
No 8
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.41 E-value=0.013 Score=33.31 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 16 ALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 16 ~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
++.+||+.+..++|.+.+++..+..+|..+++.+...+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E 40 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLE 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 56788888888888888888888888888887776554
No 9
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.31 E-value=0.18 Score=31.57 Aligned_cols=47 Identities=30% Similarity=0.470 Sum_probs=37.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|...++.++.-.....|||..+|.+|+++++|+..+-.++.+.+...
T Consensus 64 ak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 64 AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777899999999999999999999988887776544
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.27 E-value=0.5 Score=30.02 Aligned_cols=56 Identities=25% Similarity=0.296 Sum_probs=39.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHhhhHhhhhhhh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEED-------LERSEERLATATAKLAEASQAADESERDWIT 58 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEee-------ld~~eErL~~a~~KLeeaeK~adesER~~~~ 58 (61)
|..++..++.++..+.+.+..+|.- -+..++++.....+|.+++..|+.++|....
T Consensus 40 aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~k 102 (155)
T 2efr_A 40 SEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTK 102 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666643 3445667888899999999999999997643
No 11
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=91.21 E-value=0.92 Score=23.85 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
.+++-+|-.|.-|++.|.-+|+++...+++.......|..
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3678899999999999999999999888887666666554
No 12
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=87.98 E-value=2.3 Score=23.72 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhhHhh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATA-------KLAEASQAADESE 53 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~-------KLeeaeK~adesE 53 (61)
.+.++.+|++.+..+.+.+.+++..+.. ||-..+--..+++
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999988 9988887665544
No 13
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=87.22 E-value=1.5 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 21 IQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 21 iq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|.-|++++...+..|..|..||..+++.+
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888888888888888766
No 14
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=87.13 E-value=1.3 Score=26.74 Aligned_cols=29 Identities=38% Similarity=0.548 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 21 IQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 21 iq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|+-|++++...+..|..|..||..+++.+
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~ 65 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAV 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677777777888888888888888766
No 15
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.05 E-value=4 Score=25.77 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a 38 (61)
..|++.+|-.|..|.+-|--+|++|....+.....
T Consensus 90 E~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i 124 (155)
T 2efr_A 90 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443333
No 16
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=85.28 E-value=1.9 Score=26.33 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 21 IQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 21 iq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|+-|++++...+..|..|..||..+++.+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~ 52 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQY 52 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888889999999999888876
No 17
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=84.32 E-value=2.3 Score=25.24 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 21 IQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 21 iq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|.-|++++...+..|..|..||..+++.+
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~ 35 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAV 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888888766
No 18
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.72 E-value=3.8 Score=21.63 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAAD 50 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ad 50 (61)
+.+..++..+|..|+.|+.+|..+..........+...-..+-++.|
T Consensus 3 ~aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 3 NAKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34667788899999999999999888877766555444444444443
No 19
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=80.38 E-value=6.5 Score=25.42 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
.++..|..|++.+..+|+++....++.......|+.
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999988887766666654
No 20
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=77.66 E-value=5.6 Score=20.51 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=35.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
.+++...+|.-+..|+-|+.-+=-++..++-+|..-.++||.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788899999999999999999999999999888888774
No 21
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=74.57 E-value=6.9 Score=20.58 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=17.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEED 27 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEee 27 (61)
+..+++++|.++.-.+++|+-+|+|
T Consensus 12 ~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 12 GRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3456666777777777777777765
No 22
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=74.32 E-value=9.5 Score=21.52 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
.+.++.++|.-+..|+-|+.-|=-++..++-+|..-.++||..-+.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999999999999999999876554
No 23
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=72.12 E-value=6.6 Score=18.74 Aligned_cols=27 Identities=41% Similarity=0.544 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
.+|+++..|+-=.|-+.+.+|+.++.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888888776654
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.99 E-value=18 Score=23.58 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
+.-++..+.+++..+|+++-...+
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e 118 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQN 118 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333
No 25
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=71.17 E-value=14 Score=22.19 Aligned_cols=35 Identities=66% Similarity=0.918 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
.++.++..+..++..++.++......+.....++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (284)
T 1c1g_A 80 DAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554444444444433333
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.15 E-value=19 Score=23.48 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeea 45 (61)
.+...+|.++..+..++..++..++..+..+......|...
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444444444444444444444433
No 27
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=70.74 E-value=12 Score=21.18 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh---hhhhhcC
Q psy13152 20 RIQLLEEDLERSEERLATATAKLAEASQAADESER---DWITRGQ 61 (61)
Q Consensus 20 kiq~lEeeld~~eErL~~a~~KLeeaeK~adesER---~~~~~~~ 61 (61)
.+..+...++...........++....+.....+. -|||-|+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs 55 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGR 55 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 33333333333334444444444444444444333 3777664
No 28
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=70.48 E-value=11 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
-++.-++.|+.||+.+|--++-.+.+|.
T Consensus 42 sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777766665553
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.48 E-value=25 Score=24.70 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhhh
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITR 59 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~~ 59 (61)
.++..+.+++....+.+....+.+.....++.+.++..++.--.++|+
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 591 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVS 591 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 334444444444444444444444455555555555555555555553
No 30
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.00 E-value=9.7 Score=19.38 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 17 LNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
|-.+|.-+-.+..+++++++..+.||.+.+.+|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666677777777777777777777777655
No 31
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=66.97 E-value=13 Score=20.98 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
++.-++.|+.||+.+|--++-.+-+|
T Consensus 43 ce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 43 CRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665555444
No 32
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=65.25 E-value=12 Score=19.19 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
+|-..|.||+.++|.-+...-.++.....||+-.|++
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667899999999999999999999999999877764
No 33
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=63.54 E-value=10 Score=17.78 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLE 29 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld 29 (61)
++.+|-.+++|..|+|-+|..|+
T Consensus 3 wealekkcaalesklqalekkle 25 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777776666544
No 34
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=62.97 E-value=27 Score=22.34 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATAT 39 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~ 39 (61)
....+-+..|+.||+.+..++++...++..+.
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666778888899999999999998877663
No 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.40 E-value=40 Score=30.06 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~ 31 (61)
++..+..++.+|..+++.+...
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATY 2047 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 36
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.89 E-value=21 Score=26.13 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
....+|.+-..|.++|.+++++..++++.|..+...-.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMIL 366 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567788888999999999999999998877755433
No 37
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=56.17 E-value=16 Score=17.71 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
|..++|+.|..|-.+...+|+++.+..+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4578888999998888899998877654
No 38
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.71 E-value=59 Score=29.08 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLE 29 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld 29 (61)
+.+...++.++..++.+|..+.++++
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=55.55 E-value=31 Score=20.62 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhhhhhh
Q psy13152 22 QLLEEDLERSEERLATATAKLAEASQAADESERDWIT 58 (61)
Q Consensus 22 q~lEeeld~~eErL~~a~~KLeeaeK~adesER~~~~ 58 (61)
..++.++......-.....++-+.|..-|+-||.-|+
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3344555544444444445555555666666655443
No 40
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=55.53 E-value=24 Score=19.37 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
+|-..|.||+.++|.-+...-.++.....||+-.+++.-.-
T Consensus 6 EEF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~ 46 (64)
T 3hrn_A 6 EEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKR 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 45667999999999999999999999999999888765443
No 41
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=55.04 E-value=25 Score=19.49 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHhhhHh
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLER------SEERLATATAKLAEASQAADES 52 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~------~eErL~~a~~KLeeaeK~ades 52 (61)
..+.++..|..|..+|..|+..+.. -.+++...+..+..++...+..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777776642 2345666666666666655543
No 42
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.54 E-value=51 Score=23.06 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEAS 46 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeae 46 (61)
...+.++..|.+++..++.++...+..+.....+|...+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777766666665444
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.92 E-value=25 Score=18.32 Aligned_cols=22 Identities=5% Similarity=0.053 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13152 14 VAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 14 v~~L~rkiq~lEeeld~~eErL 35 (61)
+..|+.+++.|-..++......
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV 27 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDA 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 44
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.42 E-value=28 Score=18.59 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13152 11 ESEVAALNRRIQLLEEDLE 29 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld 29 (61)
..|+..|++.||.++-+++
T Consensus 55 k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544443
No 45
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=49.35 E-value=24 Score=17.54 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
+|-..|.||+.++|.-+...-.++.....||+
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~ 38 (39)
T 3te3_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLK 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667999999999988888777766655553
No 46
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=49.15 E-value=51 Score=21.30 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=9.9
Q ss_pred HHHHHHhHhhhHhhhhhhh
Q psy13152 40 AKLAEASQAADESERDWIT 58 (61)
Q Consensus 40 ~KLeeaeK~adesER~~~~ 58 (61)
.++-+.+..-|+.||.-|+
T Consensus 109 ~~ireLEq~NDdlEr~~R~ 127 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRA 127 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3344455555666665544
No 47
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=48.58 E-value=58 Score=21.78 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
|.+.+++|+-+..|..++..+.......+.++.....+|.
T Consensus 5 nsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~ 44 (233)
T 2yko_A 5 RSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQ 44 (233)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778887887777766655444333334333333333
No 48
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=47.81 E-value=36 Score=19.89 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSE 32 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~e 32 (61)
..+++.|+..|.++|..+|.-...+.
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45688899999999998887554443
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.73 E-value=43 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
+..++..+++.|+.++-+++.....
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456666777777666666655443
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=46.45 E-value=44 Score=19.74 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~ 31 (61)
+..++..+++.|+.++-+++..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555544
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.44 E-value=41 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13152 17 LNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL 35 (61)
|..++..++..++..+..+
T Consensus 70 L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQE 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.37 E-value=30 Score=16.96 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLAT 37 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~ 37 (61)
|..++|.-|..|-.+...+++++.+..+-|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 56788999999999999999998887665543
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.05 E-value=30 Score=16.94 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
|..++|..|..|-.+-.-+|+++.+.++-|.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4568889999998888899998887665543
No 54
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.63 E-value=44 Score=18.68 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13152 17 LNRRIQLLEEDLERSEERLATATAKLAEAS 46 (61)
Q Consensus 17 L~rkiq~lEeeld~~eErL~~a~~KLeeae 46 (61)
|..++..++..++..+..+.....++.+..
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=42.32 E-value=43 Score=18.53 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 4 TLLSRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 4 ~~~~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
-.+...+|.+=..|..+++.++.+++.++..
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777888888888888777643
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.00 E-value=46 Score=18.72 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
.+...+|..=..|..+++.++.+++.++..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777776643
No 57
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.40 E-value=31 Score=16.59 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
|..++|.-|..|-.+...+++++.+..+
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888888888888888888877544
No 58
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.06 E-value=34 Score=19.78 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~ 31 (61)
+..+++.+...|++++..+.+++++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777766653
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.92 E-value=63 Score=19.70 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
+.+.+.-+++++-++.++..-...|..+..+++...+
T Consensus 63 ~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 63 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444556666666666666666666666665544
No 60
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=37.54 E-value=42 Score=16.98 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13152 14 VAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 14 v~~L~rkiq~lEeeld~~eE 33 (61)
+..|..++..+|..+.....
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665554433
No 61
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.02 E-value=76 Score=19.53 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
.++|..|+.++..+...|..+..+-+..-+..++.-+
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887777776666665555433
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.94 E-value=39 Score=16.21 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
..++|..|..|-.+-..+++++.+..+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778888887777888887766543
No 63
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.45 E-value=48 Score=17.10 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
..-.|+..-++-|-.+++++|++..+|..++.++..
T Consensus 27 ~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 27 EIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777778888999999999998888877653
No 64
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=35.18 E-value=41 Score=16.23 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
|..++|.-|..|-.+-..+|+++.+..+=
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56778888888888888888888776543
No 65
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.04 E-value=66 Score=18.55 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
++..+..|...+..++.++.....++......+.+.-+
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666666666666666655443
No 66
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.93 E-value=74 Score=19.03 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
.++|..++.++..+...|..+..+-+..-+..++.-+
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887777776666665555443
No 67
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.84 E-value=1.1e+02 Score=20.27 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHh
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADES 52 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ades 52 (61)
+-.-+..+..|+.+++..|.+++......+..|++..+.+.+.
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677888888888888888888888888888887766543
No 68
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.58 E-value=81 Score=18.81 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
+++..|+.-|...|-.|.-+..+|.+|....+
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777788888888888888887776655
No 69
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.15 E-value=48 Score=16.02 Aligned_cols=29 Identities=10% Similarity=0.165 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
|..++|.-|..|-.+-..+++++.+..+=
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45678888888888888888888776543
No 70
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=32.07 E-value=1.4e+02 Score=21.69 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=23.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATA 38 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a 38 (61)
|.......-.++..+..+|..+|.++..+++.|...
T Consensus 171 A~~~Y~~l~~eV~pLk~eLk~lE~eL~e~e~eL~~l 206 (536)
T 3err_A 171 AQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEAL 206 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777777777777777776666543
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.83 E-value=87 Score=18.92 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
.++..|...+..++.++-.....|..+..+++.+.+..
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555444443
No 72
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.72 E-value=96 Score=20.71 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 15 AALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 15 ~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
.+||.|+..+|+-.+..++++...++..+..+|
T Consensus 2 e~lnsRvd~~EErIs~le~rleei~q~eq~~ek 34 (233)
T 2yko_A 2 ASLRSRCDQLEERVSAAEDEINEIKREGKFREK 34 (233)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776655554444444
No 73
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=31.58 E-value=57 Score=16.74 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy13152 13 EVAALNRR 20 (61)
Q Consensus 13 Ev~~L~rk 20 (61)
.+.+|+.|
T Consensus 24 ~l~~Lt~k 31 (47)
T 1aq5_A 24 LINTLQQK 31 (47)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 74
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.55 E-value=81 Score=18.49 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
++-+.|.|+..|..+++.+-..|+.+..
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~ 39 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTA 39 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777776666666666655443
No 75
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.41 E-value=49 Score=15.88 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
|..++|.-|..|-.+-..+|+++.+..+=|
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 346788888888888888888887765543
No 76
>2ret_B EPSJ; general secretion pathway, cholera, pseudopilus, type 4 PILI biogenesis, methylation, protein transport; HET: MSE; 2.21A {Vibrio vulnificus} SCOP: d.24.1.5 PDB: 3cfi_B
Probab=31.29 E-value=62 Score=19.72 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=22.9
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 2 IATLLSRHAESEVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 2 ~a~~~~~~aE~Ev~~L~rkiq~lEeeld~~ 31 (61)
.+++......+.+..|++-+.+++.|+..+
T Consensus 6 r~~e~~~~~~~rl~~Lqra~~~lerDl~Q~ 35 (175)
T 2ret_B 6 RSNELSQERTARLNELQRALVMMDSDFRQI 35 (175)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355667777889999999999999998663
No 77
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.17 E-value=58 Score=16.73 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
...++..|.+.+..+.+.+...++
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555544443
No 78
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.19 E-value=1.4e+02 Score=20.80 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKL 42 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KL 42 (61)
+...++.++..|.+.|..++.++....++|......-
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r 47 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVR 47 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777777665554433
No 79
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=29.62 E-value=36 Score=17.53 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13152 11 ESEVAALNRRIQLLEEDLER 30 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~ 30 (61)
=+||..|++-|..|..++++
T Consensus 26 fdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 26 MDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 35888898888888888765
No 80
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.56 E-value=59 Score=16.26 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13152 15 AALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 15 ~~L~rkiq~lEeeld~~eEr 34 (61)
..|.+||..+|.-||...+.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544443
No 81
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=29.27 E-value=82 Score=17.88 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy13152 14 VAALNRRIQLLEEDL 28 (61)
Q Consensus 14 v~~L~rkiq~lEeel 28 (61)
+..|+.+++.|+..+
T Consensus 6 l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 6 LANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 82
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.27 E-value=94 Score=18.50 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEER 34 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eEr 34 (61)
+-.-|..|..+|..+|-+|+...-.
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777788888888888887533
No 83
>3nje_A General secretion pathway protein J; type II secretion, pseudopilin, minor pilin, pilin fold, SEC XCPU, XCPV, XCPX, protein transport; 1.85A {Pseudomonas aeruginosa}
Probab=28.47 E-value=42 Score=21.44 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=20.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~ 31 (61)
++.......+.+..|+|-+.+|+.|+..+
T Consensus 10 s~e~~~~~~erl~~Lqra~~~lerDl~Q~ 38 (211)
T 3nje_A 10 TDQATRVQEQRMRELVRAMGALERDLTQA 38 (211)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556667789999999999999998764
No 84
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=28.39 E-value=1.1e+02 Score=19.22 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
....++..+.+.++....+++++..........++.+..
T Consensus 120 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~ 158 (305)
T 2efl_A 120 SNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQ 158 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655555555554443
No 85
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.37 E-value=92 Score=18.13 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLER 30 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~ 30 (61)
...++..|..+|+.+|.++.+
T Consensus 94 e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666544
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.33 E-value=86 Score=17.77 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
+.+.+.+.+..++++++..+-++.-+...|+...|
T Consensus 61 eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 61 EYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566667777888888888888888777776544
No 87
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.32 E-value=98 Score=21.14 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLATAT 39 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~~a~ 39 (61)
+|.+++.-.+||+.+|.+....+..|..+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777776655544444433
No 88
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.17 E-value=68 Score=16.52 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
+...+...+..|..+-.-|.+.|..+...|....+.++.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667777777777777777777776666555543
No 89
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.06 E-value=81 Score=17.35 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeea 45 (61)
...-.|+..-++-|--+.+++|++..+|..++.++...
T Consensus 46 ~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 46 LDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888999888888888877643
No 90
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=27.19 E-value=71 Score=16.46 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLA 43 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLe 43 (61)
...-.|+..-++-|-.+++.+|++..+|..++.++.
T Consensus 27 ~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 27 LDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345567777788888888999998888888887765
No 91
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.02 E-value=77 Score=16.81 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhhh
Q psy13152 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesER 54 (61)
....+...+..+.+-|+.....|..+-.++..++..+-...|
T Consensus 56 ~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A~~~~ 97 (98)
T 3gwk_C 56 QFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQIS 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444556667777777777777777777777777765554444
No 92
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=26.36 E-value=64 Score=16.30 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=13.1
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRI 21 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rki 21 (61)
|+++++.++.+|..|..|+
T Consensus 11 a~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 11 ATETADAMNREVSSLKNKL 29 (45)
T ss_dssp HTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5667777777777775554
No 93
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.19 E-value=1.6e+02 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy13152 9 HAESEVAALNRRIQLLEEDLER 30 (61)
Q Consensus 9 ~aE~Ev~~L~rkiq~lEeeld~ 30 (61)
++|...++.|+-+.-|.+-|++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~ 436 (471)
T 3mq9_A 415 DVEAQAATANHTVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcchhHHHHHHHHHH
Confidence 3444444444444444444433
No 94
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.95 E-value=1.6e+02 Score=20.22 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 11 ESEVAALNRRIQLLEEDLERSEERLATATAK 41 (61)
Q Consensus 11 E~Ev~~L~rkiq~lEeeld~~eErL~~a~~K 41 (61)
|.-|......|+.|+..++..+.++.....+
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333333
No 95
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.67 E-value=1.4e+02 Score=19.38 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
...++.+|+++++.++.+....+.++.
T Consensus 39 k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 39 KATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 444555555555555555554444443
No 96
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=25.00 E-value=96 Score=17.18 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAE 44 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLee 44 (61)
+...-.|+..-++-|-.+.+..|++..++..++.++..
T Consensus 46 A~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 46 AIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777888888888888888888888777653
No 97
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.94 E-value=95 Score=17.15 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~ 31 (61)
++..++.+-..|..+|..|..++...
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666555543
No 98
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.91 E-value=68 Score=15.45 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
|..++|.-|..|-.+...+++++.+..+=|
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 456778888888888888888887765543
No 99
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=24.40 E-value=93 Score=16.82 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
...-.||..-++=|-.+++++|++..+|..++.++...-+.
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777888889999999999999999998876654
No 100
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.58 E-value=1.1e+02 Score=17.29 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERL 35 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL 35 (61)
.++..++.+-..|..+|..|..++.....-|
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777776655443
No 101
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=23.41 E-value=76 Score=15.45 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy13152 24 LEEDLERSEERLATATAKLAEAS 46 (61)
Q Consensus 24 lEeeld~~eErL~~a~~KLeeae 46 (61)
.++|.-+-++++..+-.+|+++-
T Consensus 8 te~DIr~QE~rV~~aR~rL~eaL 30 (36)
T 2l2l_B 8 TDEDIRKQEERVQQVRKKLEEAL 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888887765
No 102
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.74 E-value=1.9e+02 Score=19.70 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=24.7
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 2 IATLLSRHAESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 2 ~a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
+|++-...+..++..++.|+..|...+++.+..+.
T Consensus 47 ~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 47 YAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46666777777888777777777777766665553
No 103
>4e40_A Putative uncharacterized protein; haptoglobin-hemoglobin receptor, helical bundle, receptor, C surface, transport protein; 1.60A {Trypanosoma congolense}
Probab=22.65 E-value=1.8e+02 Score=19.55 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13152 7 SRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEAS 46 (61)
Q Consensus 7 ~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeae 46 (61)
..+++..+.....++..|+.-++.++++|..+..--++++
T Consensus 202 M~~Le~dvK~a~~~m~~L~~a~E~a~~ql~~a~~~~~~~~ 241 (252)
T 4e40_A 202 LDNLDKDVKSVEQRAEELETALEKAERQLEKAEKAAEEAE 241 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567777888888888888888877777655554444443
No 104
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.30 E-value=1.2e+02 Score=17.23 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 22 QLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 22 q~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
|.+-++|.++...+..+..+|-++++.-.+
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777665544
No 105
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.63 E-value=1.2e+02 Score=17.20 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSE 32 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~e 32 (61)
+.++.++..|.-++..++.++....
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555543
No 106
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.54 E-value=1.6e+02 Score=18.47 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
++-++.+-+++...+-.+..+..|+...++
T Consensus 95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 95 NKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554444
No 107
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.17 E-value=2.1e+02 Score=19.69 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHhh
Q psy13152 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53 (61)
Q Consensus 5 ~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~adesE 53 (61)
.+..++.+++..+...|...+..+...+..|.....++.+........+
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777766554443
No 108
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=20.75 E-value=86 Score=15.08 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 6 LSRHAESEVAALNRRIQLLEEDLERSEE 33 (61)
Q Consensus 6 ~~~~aE~Ev~~L~rkiq~lEeeld~~eE 33 (61)
|..++|.-|..|-.+-.-++++..+..+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5667888888887777778877776554
No 109
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.51 E-value=1.7e+02 Score=18.28 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=20.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 3 a~~~~~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeea 45 (61)
||.....+--+-..+.+|...++..+......|...+..|...
T Consensus 99 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555555555555555555444444433
No 110
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=20.50 E-value=1.5e+02 Score=17.84 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 14 VAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 14 v~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
+.+|..+++.+|.-+.....+|.....++.+.+.
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEMEA 38 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666666777666666676666666666554
Done!