Query psy13152
Match_columns 61
No_of_seqs 109 out of 188
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 20:55:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13152.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13152hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 61.9 6.6 0.00048 19.5 3.8 27 10-36 2-28 (66)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 41.1 23 0.0017 18.7 5.5 36 14-49 67-102 (107)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 34.3 36 0.0026 19.0 5.5 34 18-51 90-123 (129)
4 d1yzma1 a.2.19.1 (A:456-501) F 30.7 28 0.002 16.7 3.6 19 12-30 25-43 (46)
5 d2rfra1 d.17.4.28 (A:1-153) Un 29.1 14 0.001 19.7 1.9 17 13-29 3-19 (153)
6 d2efka1 a.238.1.4 (A:10-288) C 25.6 56 0.0041 18.5 7.4 41 8-48 105-145 (279)
7 d1seta1 a.2.7.1 (A:1-110) Sery 18.6 66 0.0048 16.7 6.0 27 10-36 69-95 (110)
8 d1uuja_ a.221.1.1 (A:) Lissenc 18.4 33 0.0024 17.8 1.9 19 13-31 56-74 (76)
9 d1fxkc_ a.2.5.1 (C:) Prefoldin 15.6 83 0.0061 16.5 7.6 32 16-47 92-123 (133)
10 d1cxzb_ a.2.6.1 (B:) Protein k 14.7 90 0.0066 16.4 4.3 24 22-45 59-82 (86)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=61.87 E-value=6.6 Score=19.45 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
.+.|+.-|++++..++.+++..+.+|.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~ 28 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLA 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456777777777777777777766654
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=41.06 E-value=23 Score=18.73 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q psy13152 14 VAALNRRIQLLEEDLERSEERLATATAKLAEASQAA 49 (61)
Q Consensus 14 v~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~a 49 (61)
+..|..++..++.+++..+..+.....++.+..+..
T Consensus 67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666665555443
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.25 E-value=36 Score=18.99 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy13152 18 NRRIQLLEEDLERSEERLATATAKLAEASQAADE 51 (61)
Q Consensus 18 ~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ade 51 (61)
.++|..|++++..+..+|..+..+.+..-+..+.
T Consensus 90 ~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~ 123 (129)
T d1ykhb1 90 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888887777776665554443
No 4
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.74 E-value=28 Score=16.66 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13152 12 SEVAALNRRIQLLEEDLER 30 (61)
Q Consensus 12 ~Ev~~L~rkiq~lEeeld~ 30 (61)
+||..|.+-|..+++++.+
T Consensus 25 dEV~~Le~NLreLq~e~~~ 43 (46)
T d1yzma1 25 DEVRTLQENLRQLQDEYDQ 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5888899889888888865
No 5
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=29.06 E-value=14 Score=19.72 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLE 29 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld 29 (61)
++.+|..||+.||+...
T Consensus 3 ~~~~l~~rl~~led~~a 19 (153)
T d2rfra1 3 DLTNLAARLRLLEDREE 19 (153)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 67888899998887553
No 6
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.57 E-value=56 Score=18.53 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy13152 8 RHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQA 48 (61)
Q Consensus 8 ~~aE~Ev~~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK~ 48 (61)
.....++..+.+.+......++++..+...+...++.+...
T Consensus 105 k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~ 145 (279)
T d2efka1 105 KMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQT 145 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777777777776666665555544433
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=18.58 E-value=66 Score=16.66 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 10 AESEVAALNRRIQLLEEDLERSEERLA 36 (61)
Q Consensus 10 aE~Ev~~L~rkiq~lEeeld~~eErL~ 36 (61)
+-.++..|..+|..+|..+...+..+.
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666665555555443
No 8
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.44 E-value=33 Score=17.84 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13152 13 EVAALNRRIQLLEEDLERS 31 (61)
Q Consensus 13 Ev~~L~rkiq~lEeeld~~ 31 (61)
-|.-|+|||.-+|..+...
T Consensus 56 SViRLQkKImdLE~~~~~l 74 (76)
T d1uuja_ 56 SVIRLQKKVMELESKLNEA 74 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4667888888888766543
No 9
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.60 E-value=83 Score=16.53 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13152 16 ALNRRIQLLEEDLERSEERLATATAKLAEASQ 47 (61)
Q Consensus 16 ~L~rkiq~lEeeld~~eErL~~a~~KLeeaeK 47 (61)
-+.+|+..++..++.....+......+.....
T Consensus 92 ~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~ 123 (133)
T d1fxkc_ 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444444333
No 10
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.65 E-value=90 Score=16.45 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13152 22 QLLEEDLERSEERLATATAKLAEA 45 (61)
Q Consensus 22 q~lEeeld~~eErL~~a~~KLeea 45 (61)
..++-+|..+..+|.....+|.+.
T Consensus 59 ~~V~~eL~~sN~kL~~L~~eL~eL 82 (86)
T d1cxzb_ 59 GPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555544
Done!