RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13152
(61 letters)
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 59.6 bits (145), Expect = 8e-13
Identities = 38/47 (80%), Positives = 41/47 (87%)
Query: 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDW 56
AE+EVA+LNRRIQLLEEDLERSEERLATA KL EA +AADESER
Sbjct: 34 AEAEVASLNRRIQLLEEDLERSEERLATALEKLEEAEKAADESERGR 80
Score = 23.4 bits (51), Expect = 8.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 19 RRIQLLEEDLERSEERLATATAKLAE 44
R++ ++E DLER+EER A +K+ E
Sbjct: 120 RKLVVVEGDLERAEERAEAAESKIVE 145
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 47.2 bits (113), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54
+ AL RRIQLLEE+LE SE+RL T KL EA + A+ESER
Sbjct: 71 LATNAEALTRRIQLLEEELEESEKRLKETTEKLREADKKAEESER 115
Score = 28.7 bits (65), Expect = 0.087
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53
E E+ +L ++ Q LEE++E+ EE+L A KL E+ + A +E
Sbjct: 34 EQEITSLQKKNQQLEEEVEKLEEQLKEAKEKLEESEKLATNAE 76
>gnl|CDD|216534 pfam01499, Herpes_UL25, Herpesvirus UL25 family. The herpesvirus
UL25 gene product is a virion component involved in
virus penetration and capsid assembly. The product of
the UL25 gene is required for packaging but not cleavage
of replicated viral DNA. This family includes a number
of herpesvirus proteins: EHV-1 36, EBV BVRF1, HCMV UL77,
ILTV ORF2, and VZV gene 34.
Length = 538
Score = 28.1 bits (63), Expect = 0.19
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 6 LSRHAESEVAALNRRIQLLEEDLER---SEERLATATAKLAEASQAADESERDWITRG 60
L + ++ A ++ ++ +E LE + L TA A A ++ G
Sbjct: 61 LEQLHQTRSAEIDADLRPIENQLEEVADPLDLLETAARAAEPADAAQPDATAGEAAPG 118
>gnl|CDD|223024 PHA03252, PHA03252, DNA packaging tegument protein UL25;
Provisional.
Length = 589
Score = 27.0 bits (60), Expect = 0.44
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAAD 50
LL R E+ L +R+Q + E R++ A A L + +
Sbjct: 54 LLRRRLGEELDDLQKRLQ---TECEDLRSRVSEAEALLLHDASGGE 96
>gnl|CDD|221025 pfam11202, DUF2983, Protein of unknown function (DUF2983). This
bacterial family of proteins has no known function.
Length = 353
Score = 26.8 bits (60), Expect = 0.51
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 21 IQLLEEDLERSEERLATATAKLAEA 45
+ L + LE+++ RLA A A LAEA
Sbjct: 50 LDLFHKALEQNKARLARAVAVLAEA 74
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.8 bits (60), Expect = 0.61
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 13 EVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESE 53
+ L R++ L+++LE ++R+A A++ + + +E+E
Sbjct: 63 ALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETE 103
>gnl|CDD|218630 pfam05546, She9_MDM33, She9 / Mdm33 family. Members of this
family are mitochondrial inner membrane proteins with a
role in inner mitochondrial membrane organisation and
biogenesis.
Length = 208
Score = 26.5 bits (59), Expect = 0.69
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 12 SEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54
S + L + I+ LE L ++E + A +EA S+R
Sbjct: 32 SSIEKLKKSIEELETQLRAAKEEVREAKKAYSEAIARRSSSQR 74
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug
resistance protein A). [Transport and binding proteins,
Other].
Length = 334
Score = 25.5 bits (56), Expect = 1.6
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 3 ATLLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDW 56
A L AE+ +AAL R+ + LE +++ + ++ + KL +A + ++E D
Sbjct: 78 AELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDL 131
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 25.3 bits (56), Expect = 2.0
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 16 ALNRRIQLLEEDLERSEERLATATAKLAEA----SQAADESER 54
L R + + + L+ +EERL A LAEA +QA E+ER
Sbjct: 47 ILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAER 89
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 24.9 bits (55), Expect = 2.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 6 LSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERD 55
L+ + E+ AL LEE + E +L K AE SQ + ++
Sbjct: 171 LAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKE 220
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 24.9 bits (55), Expect = 3.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 11 ESEVAALNRRIQLLEEDLERSEE 33
E +V L + ++ LE +LE S
Sbjct: 282 EKDVKELEKGLKKLERELELSAL 304
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 24.6 bits (54), Expect = 3.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERD 55
E ++A+LN I+ LE LER E+R ++ E + +E+E
Sbjct: 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
>gnl|CDD|133381 cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of
the transcription regulators TipAL, Mta, and SkgA.
Helix-turn-helix (HTH) TipAL, Mta, and SkgA
transcription regulators, and related proteins,
N-terminal domain. TipAL regulates resistance to and
activation by numerous cyclic thiopeptide antibiotics,
such as thiostrepton. Mta is a global transcriptional
regulator; the N-terminal DNA-binding domain of Mta
interacts directly with the promoters of mta, bmr, blt,
and ydfK, and induces transcription of these
multidrug-efflux transport genes. SkgA has been shown
to control stationary-phase expression of
catalase-peroxidase in Caulobacter crescentus. These
proteins are comprised of distinct domains that harbor
an N-terminal active (DNA-binding) site and a
regulatory (effector-binding) site. The conserved
N-terminal domain of these transcription regulators
contains winged HTH motifs that mediate DNA binding.
These proteins share the N-terminal DNA binding domain
with other transcription regulators of the MerR
superfamily that promote transcription by reconfiguring
the spacer between the -35 and -10 promoter elements.
Unique to this family, is a TipAL-like, lineage
specific Bacilli subgroup, which has five conserved
cysteines in the C-terminus of the protein.
Length = 103
Score = 24.0 bits (53), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 IATLLSRHAESEVAALNRRIQLLEEDLERSEERLAT 37
I LL +E + AL + +LLEE ER ++ + T
Sbjct: 63 IKELLKDPSEDLLEALREQKELLEEKKERLDKLIKT 98
>gnl|CDD|176692 cd08344, MhqB_like_N, N-terminal domain of MhqB, a type I
extradiol dioxygenase, and similar proteins. This
subfamily contains the N-terminal, non-catalytic,
domain of Burkholderia sp. NF100 MhqB and similar
proteins. MhqB is a type I extradiol dioxygenase
involved in the catabolism of methylhydroquinone, an
intermediate in the degradation of fenitrothion. The
purified enzyme has shown extradiol ring cleavage
activity toward 3-methylcatechol. Fe2+ was suggested as
a cofactor, the same as most other enzymes in the
family. Burkholderia sp. NF100 MhqB is encoded on the
plasmid pNF1. The type I family of extradiol
dioxygenases contains two structurally homologous
barrel-shaped domains at the N- and C-terminal. The
active-site metal is located in the C-terminal barrel
and plays an essential role in the catalytic mechanism.
Length = 112
Score = 24.2 bits (53), Expect = 4.3
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 25 EEDLERSEERLATATAKLAEASQAADES 52
E+D L A LA A AD
Sbjct: 65 EDDFAAFARHLEAAGVALAAAPPGADPD 92
>gnl|CDD|218674 pfam05644, Miff, Mitochondrial and peroxisomal fission factor Mff.
This protein has a role in mitochondrial and peroxisomal
fission.
Length = 243
Score = 24.4 bits (53), Expect = 4.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 13 EVAALNRRIQLLEEDLERSEER 34
++A LNRR+ LLEE+ + ++R
Sbjct: 200 QIAKLNRRLLLLEEENKERQKR 221
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 24.3 bits (53), Expect = 5.3
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITR 59
E+E+ + + + L +++ L A L + D
Sbjct: 215 EAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEE 263
>gnl|CDD|217372 pfam03105, SPX, SPX domain. We have named this region the SPX
domain after (SYG1, Pho81 and XPR1). This 180 residue
length domain is found at the amino terminus of a
variety of proteins. In the yeast protein SYG1, the
N-terminus directly binds to the G- protein beta subunit
and inhibits transduction of the mating pheromone
signal. This finding suggests that all the members of
this family are involved in G-protein associated signal
transduction. The N-termini of several proteins involved
in the regulation of phosphate transport, including the
putative phosphate level sensors PHO81 from
Saccharomyces cerevisiae and NUC-2 from Neurospora
crassa, are also members of this family. The SPX domain
of S. cerevisiae low-affinity phosphate transporters
Pho87 and Pho90 auto-regulates uptake and prevents
efflux. This SPX dependent inhibition is mediated by the
physical interaction with Spl2 NUC-2 contains several
ankyrin repeats pfam00023. Several members of this
family are annotated as XPR1 proteins: the xenotropic
and polytropic retrovirus receptor confers
susceptibility to infection with murine leukaemia
viruses (MLV). The similarity between SYG1, phosphate
regulators and XPR1 sequences has been previously noted,
as has the additional similarity to several predicted
proteins, of unknown function, from Drosophila
melanogaster, Arabidopsis thaliana, Caenorhabditis
elegans, Schizosaccharomyces pombe, and Saccharomyces
cerevisiae. In addition, given the similarities between
XPR1 and SYG1 and phosphate regulatory proteins, it has
been proposed that XPR1 might be involved in G-protein
associated signal transduction and may itself function
as a phosphate sensor.
Length = 176
Score = 23.9 bits (52), Expect = 5.7
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 11 ESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERD 55
+ + A L R++ LE+ LE EER ++ + S +
Sbjct: 81 KEKEAELLERLEELEKQLEELEERRDETSSAKSSPSDKNLLKAFE 125
>gnl|CDD|222797 PHA00452, PHA00452, T3/T7-like RNA polymerase.
Length = 807
Score = 23.8 bits (52), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 19 RRIQLLEEDLERSEERLATATAKLAEASQAAD 50
++QL EE EER A + EA +A D
Sbjct: 8 EQLQLEEEAYGEGEERFRKALERQLEAGEADD 39
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 23.8 bits (52), Expect = 6.8
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 1 MIATLLSRHAESEVAALNRRIQLLEED---LERSEERLATATAKLAE 44
+ LLS H VA + +Q ++ + R+EE L A +
Sbjct: 437 WVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQALTDIHA 483
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 23.8 bits (52), Expect = 6.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEA 45
AE AAL R L +S++ A A +LA +
Sbjct: 569 AEEVAAALRRLAARLRAAAAKSQDPDAAAAGRLAAS 604
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 23.9 bits (52), Expect = 7.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQ 47
AE+E+A+L R+ L +ER E L T AE +Q
Sbjct: 322 AEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQ 359
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 23.7 bits (52), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 9 HAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51
AE + L + I+ LEE+ E E+R+A AKL + +E
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEE 159
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 23.9 bits (52), Expect = 7.3
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 15 AALNRRIQLLEEDLERSEERLATATAKLAEASQAADE 51
+ + L +E RLA A LA + +
Sbjct: 314 QTAQNNLATAQAALANAEARLAKAKEALANLNADLAK 350
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 23.8 bits (51), Expect = 7.6
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 20 RIQLLEEDLE-----RSEERLATATAKLAEASQAADESERDW 56
RI+ +E + R ER A A K A + E++
Sbjct: 231 RIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKA 272
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A. Members of this
family are the phage shock protein PspA, from the phage
shock operon. This is a narrower family than the set of
PspA and its homologs, sometimes several in a genome, as
described by pfam04012. PspA appears to maintain the
protonmotive force under stress conditions that include
overexpression of certain phage secretins, heat shock,
ethanol, and protein export defects [Cellular processes,
Adaptations to atypical conditions].
Length = 219
Score = 23.4 bits (51), Expect = 8.1
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 3 ATLLSRHAESEVA-ALNRRIQLLEEDLERSEERLATATAKLAEA 45
A L+ + E+A AL R + +EE L + +E +A AKLAEA
Sbjct: 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEA 132
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase:
is a member of the fold-type IV of PLP dependent
enzymes that converts 4-amino-4-deoxychorismate (ADC)
to p-aminobenzoate and pyruvate. Based on the
information available from the crystal structure, most
members of this subgroup are likely to function as
dimers. The enzyme from E.Coli, the structure of which
is available, is a homodimer that is folded into a
small and a larger domain. The coenzyme pyridoxal 5;
-phosphate resides at the interface of the two domains
that is linked by a flexible loop. Members of this
subgroup are found in Eukaryotes and bacteria.
Length = 249
Score = 23.4 bits (51), Expect = 8.9
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 5 LLSRHAESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDWITRGQ 61
LL H + RR+ + E DL R L + L A+ + R ++RG
Sbjct: 23 LLDAHLARLERSA-RRLGIPEPDLPRLRAALES----LLAANDIDEGRIRLILSRGP 74
>gnl|CDD|222512 pfam14048, MBD_C, C-terminal domain of methyl-CpG binding protein
2 and 3. CpG-methylation is a frequently occurring
epigenetic modification of vertebrate genomes resulting
in transcriptional repression. This domain was found at
the C-terminus of the methyl-CpG-binding domain (MBD)
containing proteins MBD2 and MBD3, the latter was shown
to not bind directly to methyl-CpG DNA but rather
interact with components of the NuRD/Mi2 complex, an
abundant deacetylase complex. The domain is subject to
structure determination by the Joint Center of
Structural Genomics.
Length = 96
Score = 23.0 bits (50), Expect = 9.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 25 EEDLERSEERLATATAKLAEA 45
EED+ R E R+ A +LAEA
Sbjct: 75 EEDIRRQERRVKDARKRLAEA 95
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 23.5 bits (51), Expect = 9.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 10 AESEVAALNRRIQLLEEDLERSEERLATATAKLAEASQAADESER 54
AE E+ + ++ LEE+L+++ E LA +L E + +E E+
Sbjct: 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.120 0.304
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,932,053
Number of extensions: 210786
Number of successful extensions: 1068
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 240
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.1 bits)