RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13152
         (61 letters)



>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 184

 Score = 24.3 bits (52), Expect = 0.84
 Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)

Query: 25  EEDLERSEE---RLATATAKLAEASQAADESER 54
           EE+ E       RLA   A   +  +   E  R
Sbjct: 145 EEEKEACRRLGRRLAEWVAIFVDGRKELLEKIR 177


>d1zkia1 d.38.1.5 (A:4-129) Hypothetical protein PA5202 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 126

 Score = 24.2 bits (52), Expect = 1.0
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 10  AESEVAALNRRIQLLEEDLERSEERLATATAKLA 43
             + V    RR  ++E ++ + ++ +A      A
Sbjct: 91  CVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFA 124


>d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309
           {Caulobacter crescentus [TaxId: 155892]}
          Length = 142

 Score = 23.8 bits (51), Expect = 1.6
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 10  AESEVAALNRRIQLLEEDLERSEERLATATA 40
            E E+ +    +  +   +   E  L T T 
Sbjct: 95  GEGELISEEDMLFTVRGRIWAGERTLITGTG 125


>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 23.0 bits (49), Expect = 2.9
 Identities = 5/33 (15%), Positives = 13/33 (39%)

Query: 2   IATLLSRHAESEVAALNRRIQLLEEDLERSEER 34
            A  +       +   +  +  LE+D+  ++E 
Sbjct: 95  TAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEA 127


>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 227

 Score = 22.8 bits (47), Expect = 3.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 18  NRRIQLLEEDLERSEERLATATAKLAEASQAADE 51
            R + LL++      E  A + A  AE     DE
Sbjct: 193 LRVVPLLQQRWPHFAEATARSAALCAEQESLLDE 226


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 22.6 bits (48), Expect = 3.7
 Identities = 6/40 (15%), Positives = 22/40 (55%)

Query: 17  LNRRIQLLEEDLERSEERLATATAKLAEASQAADESERDW 56
           +N+ +  ++++LE ++E+LA    + ++    + + +   
Sbjct: 168 MNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGV 207


>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
          10760]}
          Length = 882

 Score = 21.7 bits (45), Expect = 9.7
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 10 AESEVAALNRR-IQLLEEDLERSEERLATATAKLAEASQAAD 50
          A+     L R  + L  E  E  E R      +  +A + AD
Sbjct: 24 ADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVAD 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.120    0.304 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 183,148
Number of extensions: 5889
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 21
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.6 bits)