BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13157
(1434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 24/24 (100%)
Query: 724 RPECVMNSECPSHEACINEKCQDP 747
RPECV+NS+CPS++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 127 RPECVLNSDCPSNKACIRNKCKNP 150
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 851 RPECVLNNDCPSNKACIRNKCKNP 874
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 549 RPECTVNSDCPLDKACVNQKCVDP 572
RPEC +NSDCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 981 RPECTVNSDCPLDKACVNQKCVDP 1004
RPEC +NSDCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 1107 RPECTVNSDCPLNKACQNQKCVDP 1130
RPEC +NSDCP N+AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 1304 RPECVLNNDCPRNKACIKYKCKNP 1327
RPECVLN+DCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 1369 RPECVLNNDCPRNKACIKYKCKNP 1392
RPECVLN+DCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 342 RPECVQNSECPHDKACINEKCADP 365
RPECV NS+CP ++AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 444 RPECVQNSDCPRNKACIRNKCKNP 467
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 232 RPECTVNSDCLQSKACFNQKCVDP 255
RPEC +NSDC ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
VN CV +PC A C D G C C+P Y G + +S C H+ C+++
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEF 104
Query: 365 PCLGSCGY-GAVCTVINHSPI 384
C G+ G +C V H +
Sbjct: 105 QCECPTGFTGHLCQVDLHHIL 125
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 51/149 (34%), Gaps = 47/149 (31%)
Query: 628 PSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPV 687
+PC +C + GS C CL Y G P C ++ V
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTG------PRCEID--------------------V 45
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDP 747
N C +PC + C D G C C+P Y G C +N+ D
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG------VHCEVNT--------------DE 85
Query: 748 CPGS-CGYNAECKVINHTPICTCPQGFIG 775
C S C +N C + C CP GF G
Sbjct: 86 CASSPCLHNGRCLDKINEFQCECPTGFTG 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINE 360
VN CV +PC A C D G C C+P Y G + +S C H+ C+++
Sbjct: 43 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK 98
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 51/149 (34%), Gaps = 47/149 (31%)
Query: 628 PSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPV 687
+PC +C + GS C CL Y G P C ++ V
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTG------PRCEID--------------------V 43
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDP 747
N C +PC + C D G C C+P Y G C +N+ D
Sbjct: 44 NECVSNPCQNDATCLDQIGEFQCICMPGYEG------VHCEVNT--------------DE 83
Query: 748 CPGS-CGYNAECKVINHTPICTCPQGFIG 775
C S C +N C + C CP GF G
Sbjct: 84 CASSPCLHNGRCLDKINEFQCECPTGFTG 112
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 468 CTPGTCGEGAIC--DVVNHAVSCTCPPGTTG---SPFVQCKTIQYEPVYTNPCQPSPCGP 522
C P C G IC + + + SC CP G T S V+ + + EP PC P+PC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 523 NSQCR 527
C
Sbjct: 63 GGTCE 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.504
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,775,563
Number of Sequences: 62578
Number of extensions: 2413861
Number of successful extensions: 4837
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 3826
Number of HSP's gapped (non-prelim): 1021
length of query: 1434
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1323
effective length of database: 8,027,179
effective search space: 10619957817
effective search space used: 10619957817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)