RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13157
(1434 letters)
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 52.4 bits (125), Expect = 1e-06
Identities = 46/342 (13%), Positives = 65/342 (19%), Gaps = 38/342 (11%)
Query: 194 YTNPCQPSPCGPNSQ---CREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQ 250
Y + C N C + + + + +
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQV 419
Query: 251 KCVDPCPGTCGQNANCRVINH----SPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVN 306
C IC C G+ G C
Sbjct: 420 LPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGK---NCE--------------CQ 462
Query: 307 PCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPC 366
S CR N S CS L + + C + + + C +
Sbjct: 463 TQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSD-VPGKLIYGQYCECDTINCER 521
Query: 367 LGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAECRD 426
G + C C GF G A E + C CR
Sbjct: 522 YNGQVCGGPGRGLCFCGKCRCHPGFEGSACQC-----ERTTEGCLNPRRVECSGRGRCRC 576
Query: 427 GVCLCLPDYYGDG---YVSCRPECVQNSDCPRNKACIR----NKCKNPCTPGTCGEGAIC 479
VC C Y C C + C + C C +
Sbjct: 577 NVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVK 636
Query: 480 DVV-NHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPC 520
S C T + C P
Sbjct: 637 GRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAGPD 678
Score = 47.0 bits (111), Expect = 4e-05
Identities = 50/350 (14%), Positives = 72/350 (20%), Gaps = 53/350 (15%)
Query: 615 PQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEA 674
+P+ + Y S C R+ C I P + +
Sbjct: 348 DHNALPDTLKVTYDSFCSNGVTHRNQPR---GDCDGVQINVPITFQVKVTATECIQEQSF 404
Query: 675 SRPPPQEDVPEPVNPCYPSPCGPYSQCRDIG--------GSPSCSCLPNYIGSPPNCRPE 726
V C Q RD C C YIG NC +
Sbjct: 405 VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIG--KNCECQ 462
Query: 727 CVMNSECPSHEACINEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIG-DAFSGCYPKP 785
S +C + C G C C + G Y +
Sbjct: 463 TQGRSSQELEGSCRKDNNSIICSGLGDC--------VCGQCLCHTSDVPGKLIYGQYCEC 514
Query: 786 PEPEQPVIQEDTCNCVPNAECRDGT--------------FLAEQPVIQEDTCNCVPNAEC 831
C C G + + C C
Sbjct: 515 DTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC 574
Query: 832 RDGVCVCLPDYYGDG---YVSCRPECVLNNDCPSNKACIRN--------KCKNPCVPGTC 880
R VC C Y C C C + C +
Sbjct: 575 RCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNP 634
Query: 881 GQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPN 930
+G C + C T Q + +Y + + GP+
Sbjct: 635 VKGRTCKERD---SEGCWVAYTLE---QQDGMDRYLIYVDESRECVAGPD 678
Score = 44.3 bits (104), Expect = 3e-04
Identities = 50/339 (14%), Positives = 80/339 (23%), Gaps = 47/339 (13%)
Query: 74 SCGQNANCRVINHSPVCSCKPGFTGE--PRIRCNKIPHGVCVCLPDYYGDGYVSCRPECV 131
NA + + C G T PR C+ + V + V
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFV 405
Query: 132 LNSDCPSNKACIRNKCKNPC-VPGTCGEGAICNVENHAV--MCTCPPGTTGSPFIQCKPV 188
+ + ++ ++ + C + ++C+ + +C C G G
Sbjct: 406 IRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQG 465
Query: 189 QNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACF 248
++ C+ C C + C C
Sbjct: 466 RSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCE----------CD 515
Query: 249 NQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPC 308
C CG C C PGF G A C E E
Sbjct: 516 TINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGSA---CQ-------CERTTEGCLNP 563
Query: 309 VPSPCGPYAQCRDINGSPSCSCLPNYIGA----PPNCRPECVQNSECPHDKAC----INE 360
C +CR C C Y P C C + C +
Sbjct: 564 RRVECSGRGRCRC----NVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGK 619
Query: 361 KCADPCLG-----SCGYGAVCTVINHSPICTCPEGFIGD 394
C+ C G + G C + C + +
Sbjct: 620 NCSAACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLE 655
Score = 43.9 bits (103), Expect = 4e-04
Identities = 33/281 (11%), Positives = 61/281 (21%), Gaps = 32/281 (11%)
Query: 918 YTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSP 977
Y + C N + + Q +E + +
Sbjct: 360 YDSFCSNGVTHRNQPRGDCDGVQINVPITFQVK-VTATECIQEQSFVIRALGFTDIVTVQ 418
Query: 978 PACRPECTVNSDCPLDKACVNQKCVDPCPGSCG--------QNANCRVINHSPVCSCKPG 1029
+ EC C + ++ C + + SC+
Sbjct: 419 VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 478
Query: 1030 FTGEPRIRCNRIHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNK 1089
C C + + + + + CG +
Sbjct: 479 NNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG 538
Query: 1090 QAVCSCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPI 1149
+ C C P + GS ACQ ++ + C + + +
Sbjct: 539 K--CRCHPGFEGS------------------ACQCERTTEGCLNPRRVECSGRGRCRCNV 578
Query: 1150 CTCKPGYTGDALSYCNRIPPPPPPQEP---ICTCKPGYTGD 1187
C C GY C P P + G G
Sbjct: 579 CECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGK 619
Score = 42.8 bits (100), Expect = 8e-04
Identities = 56/381 (14%), Positives = 85/381 (22%), Gaps = 59/381 (15%)
Query: 259 TCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQ 318
NA + + C G T + + V +
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDC-DGVQINVPITFQVKVTATECIQEQSF 404
Query: 319 CRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGSCGYGAVCTV 378
G + CR + S C C C
Sbjct: 405 VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGIC------------RCDT 452
Query: 379 INHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAECRDGVCLCLPDYYGD 438
C C + ++ C +C G CLC
Sbjct: 453 GYIGKNCECQTQGRSSQELEGSCRKD--------NNSIICSGLGDCVCGQCLCHTSDVPG 504
Query: 439 GYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSP 498
+ + +C R + C P G C G C C PG GS
Sbjct: 505 KLIYGQYCECDTINCERYNGQV---CGGPGR-GLCFCG----------KCRCHPGFEGS- 549
Query: 499 FVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS----PPACRPECTV 554
C+ + NP C +C VC C Y P C C
Sbjct: 550 --ACQCERTTEGCLNPR-RVECSGRGRC----RCNVCECHSGYQLPLCQECPGCPSPCGK 602
Query: 555 NSDCPLDKAC----VNQKCVDPCPG-----SCGQNANCRVINHSPVCSCKPGFTGEPRIR 605
C + C CPG + + C+ + C +T E +
Sbjct: 603 YISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLEQQDG 659
Query: 606 CNKIPPRPPPQEDVPEPVNPC 626
++ + + C
Sbjct: 660 MDRYLIYVDESRECVAGPDGC 680
Score = 41.6 bits (97), Expect = 0.002
Identities = 54/340 (15%), Positives = 81/340 (23%), Gaps = 69/340 (20%)
Query: 61 GCYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPH---GVCVCLPD 117
+ + + P C C+ R C+ G+C C
Sbjct: 396 TECIQEQSFVIRALGFTDIVT--VQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTG 453
Query: 118 YYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPC-VPGTCGEGAICNVENHAVMCTCPPG 176
Y G +C + S +C ++ C G C G C C
Sbjct: 454 YIGK---NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----------QCLCHTS 500
Query: 177 TTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECT 236
I + + + + CG + + C C P + GS
Sbjct: 501 DVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK--CRCHPGFEGS--------- 549
Query: 237 VNSDCLQSKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSR 296
AC ++ + C + R +C C G+ C
Sbjct: 550 ---------ACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLP---LCQE----- 592
Query: 297 PLESPPEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKA 356
P PSPCG Y C + G NC C +
Sbjct: 593 ---------CPGCPSPCGKYISCAE-----CLKFEKGPFG--KNCSAACPGLQLSNNPVK 636
Query: 357 CINEKCADPCLGSCGY------GAVCTVINHSPICTCPEG 390
K D Y G +I C G
Sbjct: 637 GRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAG 676
Score = 39.3 bits (91), Expect = 0.009
Identities = 47/338 (13%), Positives = 71/338 (21%), Gaps = 73/338 (21%)
Query: 1078 CGPNSQCREVNKQAVCSCLPNYFGSPP--------ACRPECTVNSDCPLNKACQNQKCVD 1129
N+ + C T + Q Q V
Sbjct: 347 LDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVI 406
Query: 1130 PCPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPPQEPICTCKPGYTGDAL 1189
G + P C C+ S C+ + IC C GY G
Sbjct: 407 RALGFTDIV----TVQVLPQCECRCRDQSRDRSLCH---GKGFLECGICRCDTGYIGK-- 457
Query: 1190 SYCNRIPPPPPPQDDVPEPVNPCYPSPCGLYSECRNVNGAPSCSCLINYIGSPPNCRPEC 1249
C Q+ C +C C C + + C
Sbjct: 458 -NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYC 512
Query: 1250 IQNSLLLGQSLLRTHSAVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVL 1309
+++ C C G C C P + G
Sbjct: 513 ECDTI------------NCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS----------- 549
Query: 1310 NNDCPRNKACIKYKCKNPCVSAVQPVIQEDTCNCVPNAECRDGVCVCLPEYYGDGYVSCR 1369
AC + C++ C CR VC C Y C+
Sbjct: 550 --------ACQCERTTEGCLN-------PRRVECSGRGRCRCNVCECHSGYQLP---LCQ 591
Query: 1370 PECVLNNDCPRNKACIKYKCKNPCVHPICSCPQGYIGD 1407
+ C + +C + +G G
Sbjct: 592 ECPGCPSPCGKYISCAE----------CLKFEKGPFGK 619
Score = 37.8 bits (87), Expect = 0.033
Identities = 51/384 (13%), Positives = 77/384 (20%), Gaps = 77/384 (20%)
Query: 983 ECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIH 1042
N+ K + C + +C + + + + T I+
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSF- 404
Query: 1043 AVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 1102
G T VQ P S C + +C C Y G
Sbjct: 405 ---VIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFL----ECGICRCDTGYIGK 457
Query: 1103 PPACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALS 1162
C+ + + + + N + G C C C L
Sbjct: 458 NCECQTQGRSSQELEGSCRKDNNSIICSGLGDC----------VCGQCLCHTSDVPGKLI 507
Query: 1163 YCNRIPPPPPPQEPICTCKPGYTGDALSYCNRIPPPPPPQDDVPEPVNPCYPSPCGLYSE 1222
Y + C CG
Sbjct: 508 Y------GQYCECDTINC-----------------------------ERYNGQVCGGPGR 532
Query: 1223 CRNVNGAPSCSCLINYIGSPPNCRPECIQNSLLLGQSLLRTHSAVQPVIQEDTCNCVPNA 1282
G C C + GS C + + C
Sbjct: 533 GLCFCG--KCRCHPGFEGSACQCERTT------------------EGCLNPRRVECSGRG 572
Query: 1283 ECRDGVCVCLPDYYGDG---YVSCRPECVLNNDCPRNKACIKYKCKNPCVSAVQPVIQED 1339
CR VC C Y C C C K C +A + +
Sbjct: 573 RCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSN 632
Query: 1340 TCNCVPNAECRDGVCVCLPEYYGD 1363
+ RD C Y +
Sbjct: 633 NPVKGRTCKERDS-EGCWVAYTLE 655
Score = 37.0 bits (85), Expect = 0.050
Identities = 49/255 (19%), Positives = 71/255 (27%), Gaps = 63/255 (24%)
Query: 47 ICTCPQGYVGDAFSGCYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNK 106
IC C GY+G S +CR N+S +CS
Sbjct: 447 ICRCDTGYIGKNCECQT------QGRSSQELEGSCRKDNNSIICSG-------------- 486
Query: 107 IPHGVCVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVEN 166
G CVC +C+ ++ K C+ + G +C
Sbjct: 487 --LGDCVC-------------GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG 531
Query: 167 HAV----MCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLP 222
+ C C PG GS C+ + NP C +C VC C
Sbjct: 532 RGLCFCGKCRCHPGFEGS---ACQCERTTEGCLNPR-RVECSGRGRC----RCNVCECHS 583
Query: 223 NYFGS----PPACRPECTVNSDCLQSKAC----FNQKCVDPCPG-----TCGQNANCRVI 269
Y P C C C + F + C CPG + C+
Sbjct: 584 GYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKER 643
Query: 270 NHSPICTCKPGFTGD 284
+ C +T +
Sbjct: 644 D---SEGCWVAYTLE 655
Score = 36.6 bits (84), Expect = 0.061
Identities = 42/325 (12%), Positives = 70/325 (21%), Gaps = 57/325 (17%)
Query: 751 SCGYNAECKVINHTPICTCPQGFIGDAFSGCYPKPPEPEQPVIQEDTCNCVPNAECRDGT 810
+NA + T C G + P+ + + +
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFV 405
Query: 811 FLA-----------------EQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPE 853
A D C G+C C Y G
Sbjct: 406 IRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIG-------KN 458
Query: 854 CVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQ 913
C S++ C+ C C C C + + +
Sbjct: 459 CECQTQGRSSQEL-EGSCRKDNNSIICSGLGDC----VCGQCLCHTSDVPGKLIYGQYCE 513
Query: 914 NEPVYTNPCQPSPCGPNSQCREVNKQ---APVYT---------NPCQPSPCGPNSQCREV 961
+ + CG + + P + +P R
Sbjct: 514 CDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGR 573
Query: 962 NKQSVCSCLPNYFGS----PPACRPECTVNSDCPLDKAC----VNQKCVDPCPG-----S 1008
+ +VC C Y P C C C + C CPG +
Sbjct: 574 CRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNN 633
Query: 1009 CGQNANCRVINHSPVCSCKPGFTGE 1033
+ C+ + C +T E
Sbjct: 634 PVKGRTCKERD---SEGCWVAYTLE 655
Score = 36.2 bits (83), Expect = 0.089
Identities = 44/282 (15%), Positives = 71/282 (25%), Gaps = 47/282 (16%)
Query: 1134 TCGQNANCKVINHSPICTCKPGYTG--------DALSYCNRIPPPPPPQEPICTCKPGYT 1185
NA + + C G T D + I C + +
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFV 405
Query: 1186 GDALSYCNRIPPPPPPQDDVPEPVNPCYPSPCGLYSECRNVNGAPSCSCLINYIGSPPNC 1245
AL + + + PQ + S C C C YIG C
Sbjct: 406 IRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLEC----GICRCDTGYIGKNCEC 461
Query: 1246 RPECIQNSLLLGQSLLRTHSAVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRP 1305
+ + + L G ++ C +C G C+C + +
Sbjct: 462 QTQGRSSQELEGSC----------RKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQY 511
Query: 1306 ECVLNNDCPRNKACIKYKCKNPCVSAVQPVIQEDTCNCVPNAECRDGVCVCLPEYYGDGY 1365
+C R C C G C C P + G
Sbjct: 512 CECDTINCERYNGQ--------------------VCGGPGRGLCFCGKCRCHPGFEGS-- 549
Query: 1366 VSCRPECVLNNDCPRNKACIKYKCKNPCVHPICSCPQGYIGD 1407
+C +C + N ++ + C +C C GY
Sbjct: 550 -AC--QCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLP 588
Score = 35.5 bits (81), Expect = 0.17
Identities = 46/347 (13%), Positives = 69/347 (19%), Gaps = 43/347 (12%)
Query: 441 VSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFV 500
V+ C + + + + + G T V
Sbjct: 358 VTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTV 417
Query: 501 QCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPL 560
Q S C +C C Y G C+ + + +
Sbjct: 418 QVLPQCECRCRDQSRDRSLCHGKGFLE----CGICRCDTGYIGKNCECQTQGRSSQELEG 473
Query: 561 DKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVP 620
N + G C C C I E
Sbjct: 474 SCRKDNNSIICSGLGDC----------VCGQCLCHTSDVPGKLI-------YGQYCECDT 516
Query: 621 EPVNPCYPSPCGPYSQCRDIGGS---------PSCSCLPNYIGSPPNCRPECVMNSECPS 671
CG + G +C C G R EC C
Sbjct: 517 INCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC 576
Query: 672 HEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC---RPECV 728
+ + P PSPCG Y C + G NC P
Sbjct: 577 NVCECHSGYQLPLCQECPGCPSPCGKYISCAE-----CLKFEKGPFG--KNCSAACPGLQ 629
Query: 729 MNSECPSHEACINEKCQDPCPGSCGY---NAECKVINHTPICTCPQG 772
+++ C + + +I C G
Sbjct: 630 LSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAG 676
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 46.9 bits (111), Expect = 5e-05
Identities = 51/304 (16%), Positives = 81/304 (26%), Gaps = 35/304 (11%)
Query: 195 TNPCQPSPCGPNSQCREIN--SQAVCSCLPNYFGSPPACRP--ECTVNSDCLQSKACFNQ 250
+ C +PC P +QC S + C + G+ C EC + D S +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 251 KCVDPCPG-TCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCV 309
+CV+ PG C C P + G+ + ++ + E NPC
Sbjct: 62 RCVNTQPGFHCL--------------PCPPRYRGNQ-PVGVGLEAAKTEKQVCEPENPCK 106
Query: 310 --PSPCGPYAQC----RDINGSPSCSCLPNYIGAPPNCRPE------CVQNSECPHDKAC 357
C +A+C + C C Y G C + N C +
Sbjct: 107 DKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATY 166
Query: 358 INEKCADPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCN 417
K P L + G + P + +D
Sbjct: 167 HCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226
Query: 418 CVPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNK-ACIRNKCKNPCTPGTCGEG 476
+ C D +G + D + C + G G
Sbjct: 227 DRCDN-CPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTDGDGVG 285
Query: 477 AICD 480
CD
Sbjct: 286 DHCD 289
Score = 43.5 bits (102), Expect = 5e-04
Identities = 44/214 (20%), Positives = 70/214 (32%), Gaps = 36/214 (16%)
Query: 687 VNPCYPSPCGPYSQCRDI-GGSPSC-SCLPNYIGSPPNCRP--ECVMNSECPSHEACINE 742
+ C +PC P +QC GS SC C ++G+ +C EC + +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPD-ICFSTSKVP 61
Query: 743 KCQDPCPG-SCGYNAECKVINHTPICTCPQGFIGDAFSGCYPKPPEPEQPVIQEDTCNCV 801
+C + PG C CP + G+ G + + + C
Sbjct: 62 RCVNTQPGFHCL--------------PCPPRYRGNQPVGVGLEAA-------KTEKQVCE 100
Query: 802 PNAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECV-----L 856
P C+D T + C + + C C Y GDG + + L
Sbjct: 101 PENPCKDKTH----NCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNL 156
Query: 857 NNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVIN 890
N C +N K P +P + + D I
Sbjct: 157 NLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIG 190
Score = 43.5 bits (102), Expect = 5e-04
Identities = 48/239 (20%), Positives = 68/239 (28%), Gaps = 37/239 (15%)
Query: 305 VNPCVPSPCGPYAQCRDI-NGSPSC-SCLPNYIGAPPNCRPECVQNSECPHDKACINEKC 362
+ C+ +PC P AQC +GS SC C ++G +C EC
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDL----DEC--------ALV 50
Query: 363 ADPCLGSCGYGAVCTVINHSPIC-TCPEGFIGDAFSSCYPKPPEPIEPV------IQEDT 415
D C S C C CP + G+ + + + V ++ T
Sbjct: 51 PDIC-FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKT 109
Query: 416 CNCVPNAECR--------DGVCLCLPDYYGDGYVSCRPECV-----QNSDCPRNKACIRN 462
NC +AEC C C Y GDG + + N C N
Sbjct: 110 HNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCI 169
Query: 463 KCKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCG 521
K P P + E D +C G + G
Sbjct: 170 KDNCPHLPNSGQED--FDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVG 226
Score = 40.8 bits (95), Expect = 0.003
Identities = 47/281 (16%), Positives = 75/281 (26%), Gaps = 48/281 (17%)
Query: 623 VNPCYPSPCGPYSQCRDI-GGSPSC-SCLPNYIGSPPNCRP--ECVMNSECPSHEASRPP 678
+ C +PC P +QC GS SC C ++G+ +C EC +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVP----------- 51
Query: 679 PQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSC-SCLPNYIGSPPNCRPECVMNSECPSHE 737
+ C+ +C + C C P Y G+ P
Sbjct: 52 ---------DICF--STSKVPRCVNTQPGFHCLPCPPRYRGNQPVG--------VGLEAA 92
Query: 738 ACINEKCQD--PCP---GSCGYNAEC----KVINHTPICTCPQGFIGDAFSGCYPKPPEP 788
+ C+ PC +C +AEC + C C G+ GD + +
Sbjct: 93 KTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICG--EDSDL 150
Query: 789 EQPVIQEDTCNCVPNAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVC--VCLPDYYGDG 846
+ C C QED C D +
Sbjct: 151 DGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQ 210
Query: 847 YVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCD 887
+ + + D ++ NP T G
Sbjct: 211 LLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDA 251
Score = 36.9 bits (85), Expect = 0.057
Identities = 50/308 (16%), Positives = 78/308 (25%), Gaps = 43/308 (13%)
Query: 512 TNPCQPSPCGPNSQCREVNHQAV--CSCLPNYFGSPPACRP--ECTVNSDCPLDKACVNQ 567
+ C +PC P +QC + C + G+ C EC + D +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 568 KCVDPCPG-SCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPC 626
+CV+ PG C C P + G + + Q PE
Sbjct: 62 RCVNTQPGFHCL--------------PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 627 YPSPCGPYSQCRDIG----GSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQED 682
C +++C +G C C Y G C E P+ +
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLIC-GEDSDLDGWPN--LNLVCATNA 164
Query: 683 VPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPE--CVMNSECPSHEACI 740
+ P + D G + + + + N ++
Sbjct: 165 TYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDE 224
Query: 741 NEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIGDAFSGCYPKPPEPEQPVIQEDTCNC 800
D CP N C GD D C
Sbjct: 225 VGDRCDNCPYVHNPAQIDTDNNGEG-DACSVDIDGDDVFNE-------------RDNCPY 270
Query: 801 VPNAECRD 808
V N + RD
Sbjct: 271 VYNTDQRD 278
Score = 34.6 bits (79), Expect = 0.29
Identities = 45/282 (15%), Positives = 66/282 (23%), Gaps = 41/282 (14%)
Query: 944 TNPCQPSPCGPNSQCREVNKQSV--CSCLPNYFGSPPACRP--ECTVNSDCPLDKACVNQ 999
+ C +PC P +QC S C + G+ C EC + D +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSK-VP 61
Query: 1000 KCVDPCPG-SCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFV 1058
+CV+ PG C C P + G + A
Sbjct: 62 RCVNTQPGFHCL--------------PCPPRYRGNQPVGVGLEAAKTEKQV--------- 98
Query: 1059 QCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPE------CTV 1112
C+P T+ C + C C Y G C + +
Sbjct: 99 -CEPENPCKDKTHNCHKHAECIYL-GHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNL 156
Query: 1113 NSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPP 1172
N C N K P GQ + I + +
Sbjct: 157 NLVCATNATYHCIKDNCPHLPNSGQEDF----DKDGIGDACDDDDDNDGVTDEKDNCQLL 212
Query: 1173 PQEPICTCKPGYTGDALSYCNRIPPPPPPQDDVPEPVNPCYP 1214
GD C + P D + C
Sbjct: 213 FNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSV 254
Score = 30.8 bits (69), Expect = 3.8
Identities = 47/282 (16%), Positives = 71/282 (25%), Gaps = 41/282 (14%)
Query: 1128 VDPC-PGTCGQNANCKVINH-SPICT-CKPGYTGDALS-----YCNRIPPPPPPQEPI-- 1177
D C C A C S C C G+ G+ C +P +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPR 62
Query: 1178 ----------CTCKPGYTGDALSYCNRIPPPPPPQDDVPEPVNPCYPSPCGLYSECRNV- 1226
C P Y G+ Q PE C ++EC +
Sbjct: 63 CVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLG 122
Query: 1227 ---NGAPSCSCLINYIGSPPNCRPECIQNSLLLGQSLLRTHSAVQPVIQEDTCNCVPNAE 1283
+ C C Y G C + + + T++ + E
Sbjct: 123 HFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQE 182
Query: 1284 CRD--GVCVCLPDYYGDGYVSCRPECVLNNDCPRNKACIKYKCKNPCVSAVQPVIQEDTC 1341
D G+ D + V+ + PR K + + C D C
Sbjct: 183 DFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRC----------DNC 232
Query: 1342 NCVPNAECRDGV-----CVCLPEYYGDGYVSCRPECVLNNDC 1378
V N D C + GD + R C +
Sbjct: 233 PYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNT 274
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 43.6 bits (103), Expect = 1e-04
Identities = 32/228 (14%), Positives = 55/228 (24%), Gaps = 48/228 (21%)
Query: 147 CKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPN 206
+ C+ TC E V N+ + C+ SPC
Sbjct: 8 LERECMEETC-----SYEEAREVFEDSDKTNEF---------WNKYKDGDQCETSPCQNQ 53
Query: 207 SQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANC 266
+C++ + C+CL + G E C + C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGK----NCELFTRKLCS--------------LDNGDCDQFC 95
Query: 267 RVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQCRDINGSP 326
+S +C+C G+T + P P PCG R
Sbjct: 96 HEEQNSVVCSCARGYTLA---DNGK------------ACIPTGPYPCGKQTLERRKRSVA 140
Query: 327 SCSCLPNYIGAPPNCRP-ECVQNSECPHDKACINEKCADPCLGSCGYG 373
+ +P + + ++ P G
Sbjct: 141 QATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
Score = 40.5 bits (95), Expect = 0.002
Identities = 34/254 (13%), Positives = 54/254 (21%), Gaps = 73/254 (28%)
Query: 464 CKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPN 523
+ C TC +V + + C+ SPC
Sbjct: 8 LERECMEETCSYEEAREVF-----EDSDKTNEF---------WNKYKDGDQCETSPCQNQ 53
Query: 524 SQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANC 583
+C++ + C+CL + G E C + + C
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGK----NCELFTRKLCS--------------LDNGDCDQFC 95
Query: 584 RVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGS 643
+S VCSC G+T K P P PCG + R
Sbjct: 96 HEEQNSVVCSCARGYTLA---DNGK-------------ACIPTGPYPCGKQTLERRKRSV 139
Query: 644 PSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRD 703
+ +P + P D
Sbjct: 140 AQATSSSGEAPDSITW-------------------------KPYDAADLDPTENPFDLLD 174
Query: 704 IGGSPSCSCLPNYI 717
+ N
Sbjct: 175 FNQTQPERGDNNLT 188
Score = 35.5 bits (82), Expect = 0.065
Identities = 25/179 (13%), Positives = 38/179 (21%), Gaps = 42/179 (23%)
Query: 577 CGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQ 636
C C+ C+C GF G+ C C
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGK---NCEL------------FTRKLCSLDNGDCDQF 94
Query: 637 CRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCG 696
C + S CSC Y + + C P P PCG
Sbjct: 95 CHEEQNSVVCSCARGYTLA--DNGKAC------------------------IPTGPYPCG 128
Query: 697 PYSQCRDIGGSPSCSCLPNYIGSPPNCRP-ECVMNSECPSHEACINEKCQDPCPGSCGY 754
+ R + +P + + ++ P G
Sbjct: 129 KQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 34.3 bits (79), Expect = 0.18
Identities = 28/154 (18%), Positives = 39/154 (25%), Gaps = 44/154 (28%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQED 682
+ C SPC +C+D G +C+CL + G NC E C
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSL----------- 86
Query: 683 VPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINE 742
C + S CSC Y + + C+ P
Sbjct: 87 ----------DNGDCDQFCHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP-------- 126
Query: 743 KCQDPCPGSCGYNAECKVINHTPICTCPQGFIGD 776
CG + T G D
Sbjct: 127 ---------CGKQTLERRKRSVAQATSSSGEAPD 151
Score = 31.6 bits (72), Expect = 1.1
Identities = 24/150 (16%), Positives = 33/150 (22%), Gaps = 22/150 (14%)
Query: 873 NPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQ 932
+ C C C CTC G G E C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--------NCELFTRKLCSLDNGDCDQF 94
Query: 933 CREVNKQ-----APVYT--------NPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPA 979
C E A YT P P PCG + R + +
Sbjct: 95 CHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSIT 154
Query: 980 CRP-ECTVNSDCPLDKACVNQKCVDPCPGS 1008
+P + ++ P G
Sbjct: 155 WKPYDAADLDPTENPFDLLDFNQTQPERGD 184
Score = 31.6 bits (72), Expect = 1.1
Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 34/190 (17%)
Query: 1046 CTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPA 1105
N+ + C+ SPC +C++ + C+CL + G
Sbjct: 27 EDSDKTNEF---------WNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--- 74
Query: 1106 CRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDA-LSYC 1164
E C L+ + C +S +C+C GYT C
Sbjct: 75 -NCELFTRKLCSLD--------------NGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Query: 1165 NRIPPPPPPQEPICTCKPGYTGDALSYCNRIPPPPPPQDDVPEPVNPCYPSPCGLYSECR 1224
P P ++ + K P +P + P +
Sbjct: 120 IPTGPYPCGKQTLERRKRS------VAQATSSSGEAPDSITWKPYDAADLDPTENPFDLL 173
Query: 1225 NVNGAPSCSC 1234
+ N
Sbjct: 174 DFNQTQPERG 183
Score = 30.1 bits (68), Expect = 3.3
Identities = 23/133 (17%), Positives = 33/133 (24%), Gaps = 31/133 (23%)
Query: 1009 CGQNANCRVINHSPVCSCKPGFTG-----EPRIRC------------NRIHAVMCTCPPG 1051
C C+ C+C GF G R C ++V+C+C G
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARG 109
Query: 1052 TTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECT 1111
T + P P PCG + R A +
Sbjct: 110 YTL---------ADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPD-----SITW 155
Query: 1112 VNSDCPLNKACQN 1124
D +N
Sbjct: 156 KPYDAADLDPTEN 168
Score = 30.1 bits (68), Expect = 3.6
Identities = 26/204 (12%), Positives = 43/204 (21%), Gaps = 50/204 (24%)
Query: 920 NPCQPSPCGPNSQCREVNKQAPVYT--------NPCQPSPCGPNSQCREVNKQSVCSCLP 971
C C + C+ SPC +C++ + C+CL
Sbjct: 10 RECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69
Query: 972 NYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFT 1031
+ G E C + + C +S VCSC G+T
Sbjct: 70 GFEGK----NCELFTRKLCS--------------LDNGDCDQFCHEEQNSVVCSCARGYT 111
Query: 1032 GEP----------------RIRCNRIHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQP 1075
+ + T G +
Sbjct: 112 LADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPD--------SITWKPYDAADL 163
Query: 1076 SPCGPNSQCREVNKQAVCSCLPNY 1099
P + N+ N
Sbjct: 164 DPTENPFDLLDFNQTQPERGDNNL 187
Score = 30.1 bits (68), Expect = 4.0
Identities = 24/181 (13%), Positives = 30/181 (16%), Gaps = 52/181 (28%)
Query: 370 CGYGAVCTVINHSPICTCPEGFIG-----DAFSSCYPKPPEPIEPVIQEDTCNCVPNAEC 424
C C CTC EGF G C + C
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDN--------------GDCDQFC 95
Query: 425 RDGV----CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICD 480
+ C C Y C P P CG+ +
Sbjct: 96 HEEQNSVVCSCARGYTLA---DNGKAC------------------IPTGPYPCGKQTLER 134
Query: 481 VVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPN 540
T G + P + N N
Sbjct: 135 RKRSVAQATSSSGEAPDSITWKP--------YDAADLDPTENPFDLLDFNQTQPERGDNN 186
Query: 541 Y 541
Sbjct: 187 L 187
Score = 29.7 bits (67), Expect = 4.8
Identities = 21/158 (13%), Positives = 33/158 (20%), Gaps = 28/158 (17%)
Query: 75 CGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLP--------DYYGDGYVSC 126
C C+ C+C GF G+ C +C + SC
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGK---NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSC 106
Query: 127 RPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCK 186
L + + P P CG+ + + T G
Sbjct: 107 ARGYTLADNGKAC---------IPTGPYPCGKQTLERRKRSVAQATSSSGEAPD------ 151
Query: 187 PVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNY 224
+ P + N N
Sbjct: 152 --SITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 41.7 bits (98), Expect = 3e-04
Identities = 35/159 (22%), Positives = 53/159 (33%), Gaps = 21/159 (13%)
Query: 570 VDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPS 629
C C Q+++C ++ C C PGF+ I I +D+ E
Sbjct: 2 SRGCARWCPQDSSC---VNATACRCNPGFSSFSEI----ITTPMETCDDINECATL-SKV 53
Query: 630 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNP 689
CG +S C + GS C C P Y + + C +DV E +
Sbjct: 54 SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC-----------QDVDECSSG 102
Query: 690 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECV 728
C + C + GS SC C P + +
Sbjct: 103 --QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 35.2 bits (81), Expect = 0.054
Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 19/152 (12%)
Query: 202 PCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCG 261
C +S C +N+ C C P + D +C +CG
Sbjct: 8 WCPQDSSC--VNA-TACRCNPGFSSFSEIITTPMETCDDI--------NECATLSKVSCG 56
Query: 262 QNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCV--PSPCGPYAQC 319
+ ++C S C C PG+ E+ + V+ C C C
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPV----SGAKTFKNESENTCQDVDECSSGQHQCDSSTVC 112
Query: 320 RDINGSPSCSCLPNYIGAPPNCRPECVQNSEC 351
+ GS SC C P + +++ C
Sbjct: 113 FNTVGSYSCRCRPGWKPRHGIP--NNQKDTVC 142
Score = 32.5 bits (74), Expect = 0.37
Identities = 25/146 (17%), Positives = 43/146 (29%), Gaps = 31/146 (21%)
Query: 1128 VDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSY------------CNRIPPPPPPQE 1175
C C Q+++C ++ C C PG++ + C + +
Sbjct: 2 SRGCARWCPQDSSC---VNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKF 58
Query: 1176 PICT---------CKPGYTGDALSYCNRIPPPPPPQDDVPEPVNPC--YPSPCGLYSECR 1224
C C PGY + + + QD V+ C C + C
Sbjct: 59 SDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD-----VDECSSGQHQCDSSTVCF 113
Query: 1225 NVNGAPSCSCLINYIGSPPNCRPECI 1250
N G+ SC C + +
Sbjct: 114 NTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 32.1 bits (73), Expect = 0.53
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 23/147 (15%)
Query: 312 PCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKAC--INEKCADPCLGS 369
C + C + +C C P + + C INE CA S
Sbjct: 8 WCPQDSSC---VNATACRCNPGFSSFSEIITTPM---------ETCDDINE-CATLSKVS 54
Query: 370 CGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVI---QEDTCNCVPNAECRD 426
CG + C S C C G+ + + + E + C + C +
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 427 GV----CLCLPDYYGDGYV-SCRPECV 448
V C C P + + + + + V
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPNNQKDTV 141
Score = 32.1 bits (73), Expect = 0.55
Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 18/148 (12%)
Query: 519 PCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCG 578
C +S C C C P + D +C SCG
Sbjct: 8 WCPQDSSCVNATA---CRCNPGFSSFSEIITTPMETCDDI--------NECATLSKVSCG 56
Query: 579 QNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPC--YPSPCGPYSQ 636
+ ++C S C C PG+ + E+ + V+ C C +
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPV-----SGAKTFKNESENTCQDVDECSSGQHQCDSSTV 111
Query: 637 CRDIGGSPSCSCLPNYIGSPPNCRPECV 664
C + GS SC C P + +
Sbjct: 112 CFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 30.2 bits (68), Expect = 2.2
Identities = 32/158 (20%), Positives = 46/158 (29%), Gaps = 29/158 (18%)
Query: 1002 VDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFVQCK 1061
C C Q+++C ++ C C PGF+ +P C
Sbjct: 2 SRGCARWCPQDSSC---VNATACRCNPGFSS----------------FSEIITTPMETCD 42
Query: 1062 PIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKA 1121
I NE + CG S C C C P Y A + + C
Sbjct: 43 DI-NECATLSKV---SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDE 98
Query: 1122 CQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGD 1159
C + C + C S C C+PG+
Sbjct: 99 CSSG------QHQCDSSTVCFNTVGSYSCRCRPGWKPR 130
Score = 29.8 bits (67), Expect = 2.9
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 48 CTCPQGYVGDAFSGCYPKPPEHPC---------PGSCGQNANCRVINHSPVCSCKPGFTG 98
C C GY + + + E+ C C + C S C C+PG+
Sbjct: 70 CVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
Query: 99 EPRIR 103
I
Sbjct: 130 RHGIP 134
Score = 28.6 bits (64), Expect = 7.6
Identities = 27/153 (17%), Positives = 41/153 (26%), Gaps = 30/153 (19%)
Query: 630 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRP---ECVMNSECPSHEASRPPPQEDVPEP 686
C S C + +C C P + C +EC +
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKV----------- 53
Query: 687 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQD 746
CG +S C + GS C C P Y + + C ++E C
Sbjct: 54 -------SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD----VDE-CSS 101
Query: 747 PCPGSCGYNAECKVINHTPICTCPQGFIGDAFS 779
C + C + C C G+
Sbjct: 102 G-QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 41.6 bits (98), Expect = 4e-04
Identities = 25/166 (15%), Positives = 37/166 (22%), Gaps = 36/166 (21%)
Query: 198 CQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCP 257
C + C +C C P++ +P CVD
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNP-------------------TRVGCVDTRS 46
Query: 258 GTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYA 317
G C + R N C+ + G C + +PC
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-------------GKAWGTPCEMCP 93
Query: 318 QCRDINGSPSCSCLPNYIGAPPNCRP----ECVQNSECPHDKACIN 359
C + P EC + CIN
Sbjct: 94 AVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 37.0 bits (86), Expect = 0.016
Identities = 15/94 (15%), Positives = 23/94 (24%), Gaps = 14/94 (14%)
Query: 566 NQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNP 625
CVD G+C + R N CS + G C +
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC--------------CSLGK 83
Query: 626 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 659
+ +PC C + +P
Sbjct: 84 AWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITV 117
Score = 33.5 bits (77), Expect = 0.26
Identities = 25/155 (16%), Positives = 36/155 (23%), Gaps = 43/155 (27%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQED 682
VN C C + GS C C P++ +P CV
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG--CVDTRSGN------------ 48
Query: 683 VPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINE 742
C + R G +CS S +C C
Sbjct: 49 ------------CYLDIRPRGDNGDTACSNEIGVGVSKASC--------------CCSLG 82
Query: 743 KCQDPCPGSCGYNAECKVINHTPICTCPQGFIGDA 777
K C + +C +GF +
Sbjct: 83 KA---WGTPCEMCPAVNTSEYKILCPGGEGFRPNP 114
Score = 33.5 bits (77), Expect = 0.26
Identities = 26/163 (15%), Positives = 38/163 (23%), Gaps = 34/163 (20%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
VN C+ C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 365 PCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAEC 424
G+C N C+ G S C + + C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC--------CSLGKAWGTPCEMCPAV 95
Query: 425 RDGV----CLCLPDYYGDGY-VSCRP--ECVQNSDCPRNKACI 460
C + + V EC + + CI
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Score = 30.8 bits (70), Expect = 1.7
Identities = 26/167 (15%), Positives = 38/167 (22%), Gaps = 52/167 (31%)
Query: 998 NQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPF 1057
CVD G+C + R N CS + G C +
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL---------------- 81
Query: 1058 VQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRP----ECTVN 1113
+PC + +C + +P EC
Sbjct: 82 -------------GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQEL 128
Query: 1114 SDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDA 1160
CQ KC++ S C C GY +
Sbjct: 129 PGL-----CQGGKCIN--------------TFGSFQCRCPTGYYLNE 156
Score = 29.3 bits (66), Expect = 5.6
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 11/100 (11%)
Query: 471 GTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVN 530
G C N +C+ G S C ++ +PC
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-------GKAWGTPCEMCPAVNTSE 99
Query: 531 HQAVCSCLPNYFGSPPACRP----ECTVNSDCPLDKACVN 566
++ +C + +P EC C+N
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
Score = 28.9 bits (65), Expect = 7.1
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 1124 NQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRI---PPPPPPQEPI--- 1177
CVD G C + + N C+ + G S C + P P
Sbjct: 38 RVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNT 97
Query: 1178 ------CTCKPGYTGDA 1188
C G+ +
Sbjct: 98 SEYKILCPGGEGFRPNP 114
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 43.0 bits (100), Expect = 9e-04
Identities = 41/219 (18%), Positives = 55/219 (25%), Gaps = 48/219 (21%)
Query: 70 PCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGY----VS 125
CPG+ NC G+ RC H VC G +
Sbjct: 158 ICPGTAKGKTNC----------PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 126 CRPECVLN-SDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQ 184
C EC+ N S C+ C+N + G C E TCPP
Sbjct: 208 CHSECLGNCSQPDDPTKCV--ACRNFYLDGRCVE-------------TCPPPY------- 245
Query: 185 CKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCL-Q 243
+ + + Y C PEC
Sbjct: 246 --------YHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSS 297
Query: 244 SKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFT 282
+ C C+ PCP C + I+ G T
Sbjct: 298 NLLC--TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 40.7 bits (94), Expect = 0.005
Identities = 34/214 (15%), Positives = 45/214 (21%), Gaps = 27/214 (12%)
Query: 953 GPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVN-QKCVDPCPGSCGQ 1011
+NK C G+ + + C C CP C
Sbjct: 139 SVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKS 198
Query: 1012 NANCRVINHSPVCSCKPGFTGEPRIR-----CNRIHAVMC--TCPPGTTGSPFVQCKPIQ 1064
+ C C + N C TCPP
Sbjct: 199 H-GCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPY------------ 245
Query: 1065 NEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPL-NKACQ 1123
+ + K + Y C PEC N C
Sbjct: 246 ---YHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC- 301
Query: 1124 NQKCVDPCPGTCGQNANCKVINHSPICTCKPGYT 1157
C+ PCP C K I+ G T
Sbjct: 302 -TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCT 334
Score = 40.3 bits (93), Expect = 0.005
Identities = 28/188 (14%), Positives = 41/188 (21%), Gaps = 22/188 (11%)
Query: 418 CVPNAECRDGVCLCLPDYYGDGYVSCRPECVQ---NSDCPRNKACIRNKCKNPCT-PGTC 473
C V + C+ C + C C ++C C+ P
Sbjct: 163 AKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDP 222
Query: 474 GEGAICDVVNHAVSC--TCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNH 531
+ C C TCPP + +
Sbjct: 223 TKCVACRNFYLDGRCVETCPPPY---------------YHFQDWRCVNFSFCQDLHHKCK 267
Query: 532 QAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPV 591
+ Y C PEC C+ PCP C + I+
Sbjct: 268 NSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTS 326
Query: 592 CSCKPGFT 599
G T
Sbjct: 327 AQELRGCT 334
Score = 39.5 bits (91), Expect = 0.008
Identities = 41/233 (17%), Positives = 55/233 (23%), Gaps = 34/233 (14%)
Query: 566 NQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNP 625
N++C D CPG+ NC + V + + C K+ P
Sbjct: 152 NEECGDICPGTAKGKTNC----PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC 207
Query: 626 CYPSPCGPYSQCRDIGGSPSC-SCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVP 684
C+ G C C +C Y+ C C P
Sbjct: 208 CHSECLG---NCSQPDDPTKCVACRNFYLDG--RCVETC---------------PPPYYH 247
Query: 685 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKC 744
C + Y+ C PEC S C
Sbjct: 248 FQDWRCV--NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPC 304
Query: 745 QDPCPGSCGYNAECKVINHTPI------CTCPQGFIGDAFSGCYPKPPEPEQP 791
PCP C K I+ CT G + G E E
Sbjct: 305 LGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEAN 357
Score = 36.0 bits (82), Expect = 0.12
Identities = 29/224 (12%), Positives = 44/224 (19%), Gaps = 26/224 (11%)
Query: 195 TNPCQPSPCGPNSQCREINSQAVCSC-LPNYFGSPPACRPECTVNSDCLQSKACFNQKCV 253
N C ++ + V + + C+ C C + C
Sbjct: 151 DNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVC--------PTICKSHGCT 202
Query: 254 DPCPGTCGQ-NANCRVINHSPICT-CKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPS 311
+ NC + C C+ + C P S
Sbjct: 203 AEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGR---CVETCPPPYYHFQDWRCVNF--S 257
Query: 312 PCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGSCG 371
C + Y+ C PEC C PC C
Sbjct: 258 FC---QDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCH 313
Query: 372 YGAVCTVINHSPI------CTCPEGFIGDAFSSCYPKPPEPIEP 409
I+ CT G + E
Sbjct: 314 LLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEAN 357
Score = 35.3 bits (80), Expect = 0.19
Identities = 33/198 (16%), Positives = 47/198 (23%), Gaps = 26/198 (13%)
Query: 859 DCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPG----TTGSPFVQCKPIQN 914
D + + NK N C A A + T C I
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK 197
Query: 915 EPVYTNPCQP-------SPCGPNS-----QCREVN------KQAPVYTNPCQPSPCGPNS 956
T + P+ CR + P Q C S
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 957 QCREVNKQ---SVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNA 1013
C++++ + S Y C PEC C+ PCP C
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLE 316
Query: 1014 NCRVINHSPVCSCKPGFT 1031
+ I+ G T
Sbjct: 317 GEKTIDSVTSAQELRGCT 334
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 39.9 bits (94), Expect = 0.001
Identities = 33/143 (23%), Positives = 41/143 (28%), Gaps = 42/143 (29%)
Query: 577 CGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQ 636
C C S C C G+TG RC VN C +PC +
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGP---RCE-------------IDVNECVSNPCQNDAT 58
Query: 637 CRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCG 696
C D G C C+P Y G +C + C SPC
Sbjct: 59 CLDQIGEFQCICMPGYEGV--HCEVN------------------------TDECASSPCL 92
Query: 697 PYSQCRDIGGSPSCSCLPNYIGS 719
+C D C C + G
Sbjct: 93 HNGRCLDKINEFQCECPTGFTGH 115
Score = 38.3 bits (90), Expect = 0.004
Identities = 37/136 (27%), Positives = 43/136 (31%), Gaps = 36/136 (26%)
Query: 260 CGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQC 319
C C S C C G+TG C VN CV +PC A C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGP---RCE------------IDVNECVSNPCQNDATC 59
Query: 320 RDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGS-CGYGAVCTV 378
D G C C+P Y G +C E D C S C + C
Sbjct: 60 LDQIGEFQCICMPGYEG--VHC------------------EVNTDECASSPCLHNGRCLD 99
Query: 379 INHSPICTCPEGFIGD 394
+ C CP GF G
Sbjct: 100 KINEFQCECPTGFTGH 115
Score = 37.2 bits (87), Expect = 0.009
Identities = 31/139 (22%), Positives = 42/139 (30%), Gaps = 34/139 (24%)
Query: 198 CQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCP 257
+PC +C C CL Y G P C ++ + S C N
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG------PRCEIDVNECVSNPCQN-------- 55
Query: 258 GTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYA 317
+A C C C PG+ G V+C + C SPC
Sbjct: 56 -----DATCLDQIGEFQCICMPGYEG---VHCE------------VNTDECASSPCLHNG 95
Query: 318 QCRDINGSPSCSCLPNYIG 336
+C D C C + G
Sbjct: 96 RCLDKINEFQCECPTGFTG 114
Score = 34.5 bits (80), Expect = 0.073
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 149 NPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 208
N CV C A C + C C PG G C+ V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV---HCE------VNTDECASSPCLHNGR 96
Query: 209 CREINSQAVCSCLPNYFGS 227
C + ++ C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 34.1 bits (79), Expect = 0.11
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 466 NPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQ 525
N C C A C C C PG G V C+ T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCEV------NTDECASSPCLHNGR 96
Query: 526 CREVNHQAVCSCLPNYFGS 544
C + ++ C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 33.7 bits (78), Expect = 0.15
Identities = 30/142 (21%), Positives = 41/142 (28%), Gaps = 37/142 (26%)
Query: 515 CQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCP 574
+PC +C C CL Y G P C ++ V+ C
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG------PRCEID--------------VNECV 49
Query: 575 GS-CGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGP 633
+ C +A C C C PG+ G C + C SPC
Sbjct: 50 SNPCQNDATCLDQIGEFQCICMPGYEGV---HCE-------------VNTDECASSPCLH 93
Query: 634 YSQCRDIGGSPSCSCLPNYIGS 655
+C D C C + G
Sbjct: 94 NGRCLDKINEFQCECPTGFTGH 115
Score = 32.6 bits (75), Expect = 0.34
Identities = 38/151 (25%), Positives = 49/151 (32%), Gaps = 45/151 (29%)
Query: 626 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPE 685
+PC +C + GS C CL Y G P C +
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG--PRCEID----------------------- 44
Query: 686 PVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQ 745
VN C +PC + C D G C C+P Y G +C E +E C
Sbjct: 45 -VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV--HC-------------EVNTDE-CA 87
Query: 746 DPCPGSCGYNAECKVINHTPICTCPQGFIGD 776
C +N C + C CP GF G
Sbjct: 88 ---SSPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 31.4 bits (72), Expect = 0.80
Identities = 29/113 (25%), Positives = 38/113 (33%), Gaps = 31/113 (27%)
Query: 1009 CGQNANCRVINHSPVCSCKPGFTGEPRIRC-------------------NRIHAVMCTCP 1049
C C S C C G+TG RC ++I C C
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGP---RCEIDVNECVSNPCQNDATCLDQIGEFQCICM 71
Query: 1050 PGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 1102
PG G V C+ V T+ C SPC N +C + + C C + G
Sbjct: 72 PGYEG---VHCE------VNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH 115
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 41.4 bits (96), Expect = 0.003
Identities = 63/409 (15%), Positives = 104/409 (25%), Gaps = 34/409 (8%)
Query: 420 PNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAIC 479
P A + Y + C+ N+ P +C C GT GE
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 480 DVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLP 539
++ + S + C P+P +C Q
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 540 NYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCP---GSCGQNANCRVINHSPVCSCKP 596
+ C + + L + + C P P G ++ SC
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLT 653
Query: 597 GFT--GEPRIRC--NKIPPRPPPQEDVPEPVNPCYPS--PCGPYSQCRDIGGSPSCSCLP 650
GF G RC + + + E + P P+ + IG S +C
Sbjct: 654 GFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPK 713
Query: 651 NYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQC--------- 701
++ + P+ C NS P S ++ + + C S+C
Sbjct: 714 GFVVAGPSRYT-CQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDC 772
Query: 702 -RDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDPCPGSCGYNAECKV 760
N + P C+ CQD G
Sbjct: 773 SHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLS 832
Query: 761 INHTPICTCPQGFIGDAFSGCYPKPPEPEQPVIQEDTCNCVPNAECRDG 809
N T +C Y + E+ C C+ +C G
Sbjct: 833 SNSTKKESCG-----------YDTCYDWEKCSASTSKCVCLLPPQCFKG 870
Score = 38.3 bits (88), Expect = 0.023
Identities = 52/432 (12%), Positives = 92/432 (21%), Gaps = 38/432 (8%)
Query: 90 CSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKN 149
P I C Y + C+ N+ P+ +C
Sbjct: 464 FELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLC 520
Query: 150 PCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQC 209
C GT GE ++ S + C P+P +C
Sbjct: 521 VCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRC 580
Query: 210 REINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCP---GTCGQNANC 266
Q + C + + + + C P P G
Sbjct: 581 EGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQL 640
Query: 267 RVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQCR------ 320
++ +C GF Y +P + E P
Sbjct: 641 YLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRL 700
Query: 321 ---------------DINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCA-- 363
+ G +C N P + C +++ C +
Sbjct: 701 YRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSG 760
Query: 364 DPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAE 423
C+ + P E + + +
Sbjct: 761 SECICMSPEEDCSHHSEDLCVFDTDSN-----DYFTSPACKFLAEKCLNNQQLHFLHIGS 815
Query: 424 CRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVN 483
C+DG L +G + C + KC + C C
Sbjct: 816 CQDGRQL----EWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGG 871
Query: 484 HAVSCTCPPGTT 495
+ + C +T
Sbjct: 872 NQLYCVKMGSST 883
Score = 35.2 bits (80), Expect = 0.18
Identities = 50/372 (13%), Positives = 90/372 (24%), Gaps = 30/372 (8%)
Query: 827 PNAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVC 886
P A + Y + C+ NN P+ +C C GT G+
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 887 DVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNP 946
++ S + C P+P +C +Q T
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 947 CQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCP 1006
+ P E K+ + G P PE V + C
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIR-NEKQLYLVGEDVEISCL 652
Query: 1007 GS-----------------CGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCP 1049
+ C+ + + ++ TCP
Sbjct: 653 TGFETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCP 712
Query: 1050 PGTT--GSPFVQCKPIQNEPVYTNPC---QPSPCGPNSQCREVNKQAVCSCLPNYFGSPP 1104
G G C+ P +N + + C+ KQ+ C+ P
Sbjct: 713 KGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECI----CMSP 768
Query: 1105 ACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYC 1164
C + + C + N + ++ I +C+ G +
Sbjct: 769 EEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLER 828
Query: 1165 NRIPPPPPPQEP 1176
R+ +E
Sbjct: 829 TRLSSNSTKKES 840
Score = 31.8 bits (71), Expect = 2.0
Identities = 50/391 (12%), Positives = 93/391 (23%), Gaps = 25/391 (6%)
Query: 1061 KPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNK 1120
K +Q +PCQ +PC N + + +C C +G C + ++
Sbjct: 488 KALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQSGTYG--ENCEKQSPDYKSNAVDG 545
Query: 1121 ACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPPQEPICTC 1180
C T ++ + N +P K +P
Sbjct: 546 QWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCIND 605
Query: 1181 KPGYTGDALSYCNRI---PPPPPPQDDVPEPVNPCYPSPCGLYSECR---NVNGAPSCSC 1234
L P P PP++ Y + C G C
Sbjct: 606 DEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRC 665
Query: 1235 LIN--YIGSPPNCRPECIQNSLLLGQSLLRTHSAVQPVIQEDTCNCVPNAE-CRDGVCVC 1291
L + + C+ ++ + + + + C C
Sbjct: 666 LPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTC 725
Query: 1292 LPDYY----------GDGYVSCRPECVLNNDCPRNKACI--KYKCKNPCVSAVQPVIQED 1339
+ + ++ CI + S V D
Sbjct: 726 QGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTD 785
Query: 1340 TCNCVPNAECRDGVCVCLPEYYGDG--YVSCRPECVLNNDCPRNKACIKYKCKNPCVHPI 1397
+ + + C+ CL SC+ L R + K C +
Sbjct: 786 SNDYFTSPACKFLAEKCLNNQQLHFLHIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDT 845
Query: 1398 CSCPQGYIGDGFNGCYPKPPEGLSPGTSVFC 1428
C + PP+ G ++C
Sbjct: 846 CYDWEKCSASTSKCVCLLPPQCFKGGNQLYC 876
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 40.1 bits (93), Expect = 0.004
Identities = 29/158 (18%), Positives = 42/158 (26%), Gaps = 26/158 (16%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYI----GAPPNCRPECVQNSECPHDKACINE 360
C + G +C+ I G+ C+C Y G EC + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ------- 55
Query: 361 KCADPCLGSCGYGAVCTVINHSPICTCPEGFIGDA-FSSCYPKPPEPIEPVIQEDTCNCV 419
CT + C C G+ SC PEP+ V
Sbjct: 56 --------------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 101
Query: 420 PNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNK 457
+ L + R E V SD ++
Sbjct: 102 LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 39.4 bits (91), Expect = 0.009
Identities = 20/152 (13%), Positives = 35/152 (23%), Gaps = 24/152 (15%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQED 682
C + G +C+ I G+ C+C Y + C +EC
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAE----------- 49
Query: 683 VPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINE 742
C C + G+ C C Y P + + I+
Sbjct: 50 ---------EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDI 98
Query: 743 KCQDPCPGSCGYNAECKVINHTPICTCPQGFI 774
+ P + +
Sbjct: 99 RQVLPHRSEYTLLLNNLENAIALDFHHRRELV 130
Score = 35.1 bits (80), Expect = 0.14
Identities = 24/145 (16%), Positives = 37/145 (25%), Gaps = 7/145 (4%)
Query: 39 CRVINHTPICTCPQGYVGDAFSGCYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTG 98
C++I CTC GY E G C Q C + C C+ G+
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNSEGAFQCWCEAGYEL 74
Query: 99 EPRIRCNKIPHGVCVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGE 158
P R K V L D + + I +
Sbjct: 75 RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHH-----RREL 129
Query: 159 GAICNVENHAVMCTCPPGTTGSPFI 183
+V ++ G+ +
Sbjct: 130 VFWSDVTLDRILRANLNGSNVEEVV 154
Score = 35.1 bits (80), Expect = 0.14
Identities = 21/144 (14%), Positives = 34/144 (23%), Gaps = 7/144 (4%)
Query: 466 NPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQ 525
C G C ++ AV CTC G + + E C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 526 CREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRV 585
C C C Y P + L ++ + V P N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 586 INHSPVCSCKPGFTGEPRIRCNKI 609
+ + + ++I
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRI 140
Score = 35.1 bits (80), Expect = 0.16
Identities = 24/144 (16%), Positives = 34/144 (23%), Gaps = 7/144 (4%)
Query: 149 NPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 208
C G C + AV CTC G + + NE C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 209 CREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRV 268
C C C Y P + L + + V P N
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 269 INHSPICTCKPGFTGDALVYCNRI 292
+ + + V +RI
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRI 140
Score = 35.1 bits (80), Expect = 0.18
Identities = 32/176 (18%), Positives = 45/176 (25%), Gaps = 25/176 (14%)
Query: 512 TNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVD 571
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 572 PCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPC 631
G C Q C + C C+ G+ P R K PEPV
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALG--------PEPVLLFANRID 97
Query: 632 GPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPV 687
+ + L N I + R E V S+ R E V
Sbjct: 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153
Score = 33.6 bits (76), Expect = 0.48
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 7/114 (6%)
Query: 68 EHPC-PGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKI-----PHGVCVCLPDYYGD 121
E C + G C++I + C+C G+ R + G C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 122 GYV-SCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCP 174
+ C L D S KA + E ++
Sbjct: 63 AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Score = 32.8 bits (74), Expect = 0.87
Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 17/131 (12%)
Query: 944 TNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVD 1003
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 1004 PCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFVQCKPI 1063
G C Q C + C C+ G+ P R +
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 1064 QNEPVYTNPCQ 1074
+ N +
Sbjct: 106 SEYTLLLNNLE 116
Score = 32.4 bits (73), Expect = 1.0
Identities = 27/161 (16%), Positives = 44/161 (27%), Gaps = 24/161 (14%)
Query: 195 TNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVD 254
C + G +C+ I C+C Y + C ++C +
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAE----------- 49
Query: 255 PCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCG 314
G C Q C + C C+ G+ + PE V
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCK-------ALGPEPVLLFANRIDI 98
Query: 315 PYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDK 355
+ + L N I + R E V S+ D+
Sbjct: 99 RQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 32.1 bits (72), Expect = 1.3
Identities = 17/148 (11%), Positives = 31/148 (20%), Gaps = 19/148 (12%)
Query: 1070 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCVD 1129
C + G +C+ + C+C Y + C C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--------DGRTCQDVNECAE----- 49
Query: 1130 PCPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPPQEPICTCKPGYTGDAL 1189
G C Q C + C C+ GY P + +
Sbjct: 50 --EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSC--KALGPEPVLLFANRIDIRQVLP 103
Query: 1190 SYCNRIPPPPPPQDDVPEPVNPCYPSPC 1217
++ + +
Sbjct: 104 HRSEYTLLLNNLENAIALDFHHRRELVF 131
Score = 29.4 bits (65), Expect = 8.8
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Query: 873 NPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPC-QPSPCGPNS 931
C G C +I AV CTC G + + NE C Q +
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGA 63
Query: 932 ---QCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNS 988
C + P + P ++ + V Y ++
Sbjct: 64 FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDF 123
Query: 989 DCPLDKAC 996
+
Sbjct: 124 HHRRELVF 131
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 40.1 bits (93), Expect = 0.005
Identities = 44/329 (13%), Positives = 72/329 (21%), Gaps = 53/329 (16%)
Query: 172 TCPPGTTGSPFIQCKPVQ-NEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPA 230
TC C ++ + V + P + + + V
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 231 CRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCN 290
C C ++ + + +C C PG+ G C
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECG-----------------VCRCGPGWLGS---QCE 472
Query: 291 RIPPSRPLESPPEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSE 350
E C +C C C + G C
Sbjct: 473 CSEEDYRPSQQDECSPREGQPVCSQRGECLCGQ----CVCHSSDFG--KITGKYC----- 521
Query: 351 CPHDKACINEKCADPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPV 410
C + C C C+ C C + G + +
Sbjct: 522 -----ECDDFSCVRYKGEMCSGHGQCS----CGDCLCDSDWTGYYCNC-----TTRTDTC 567
Query: 411 IQEDTCNCVPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNP--- 467
+ + C +C G C+C+ P C C K C+ K +
Sbjct: 568 MSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTC--PDACTFKKECVECKKFDRGAL 625
Query: 468 CTPGTCGEGAICDVVNHAVSCTCPPGTTG 496
TC C +V G
Sbjct: 626 HDENTCNRY--CRDEIESVKELKDTGKDA 652
Score = 40.1 bits (93), Expect = 0.006
Identities = 42/317 (13%), Positives = 63/317 (19%), Gaps = 35/317 (11%)
Query: 231 CRPECTVNSDCLQSKACFNQKCVDPCP-GTCGQNANCRVINHSPICTCKPGFTGDALVYC 289
C N K+C K D + C GF +V
Sbjct: 370 FNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQV 429
Query: 290 NRIPPSRPLESPPEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNS 349
S G C C P ++G+ C E
Sbjct: 430 TFD------CDCACQAQAEPNSHRCNNGNGTFECGV--CRCGPGWLGSQCEC-SEEDYRP 480
Query: 350 ECPHDKACINEKCADPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEP 409
+ + + G C G C C G
Sbjct: 481 SQQDECSPREGQPVCSQRGECLCGQ----------CVCHSSDFGK---ITGKYCECDDFS 527
Query: 410 VIQEDTCNCVPNAECRDGVCLCLPDYYGDG----YVSCRPECVQNSDCPRNKACIRNKCK 465
++ C + +C G CLC D+ G + C C C
Sbjct: 528 CVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCV 587
Query: 466 NPC---TPGTCGEGAICDVV--NHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPC 520
TC + C C G+ + +
Sbjct: 588 CIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGA---LHDENTCNRYCRDEIESVKE 644
Query: 521 GPNSQCREVNHQAVCSC 537
++ VN
Sbjct: 645 LKDTGKDAVNCTYKNED 661
Score = 37.4 bits (86), Expect = 0.044
Identities = 43/288 (14%), Positives = 75/288 (26%), Gaps = 43/288 (14%)
Query: 694 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDPCPGSCG 753
C + + S E + + + + C +C
Sbjct: 379 VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQ 438
Query: 754 YNAECKVIN--------HTPICTCPQGFIGDA--FSGCYPKPPEPEQPVIQEDTCNCVPN 803
AE +C C G++G S +P + ++ +E C
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR 498
Query: 804 AECRDGT----------------FLAEQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGY 847
EC G + ++ C + +C G C+C D+ G
Sbjct: 499 GECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGY-- 556
Query: 848 VSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCG------QGAVCDVINHAVMCTCPPGT 901
C C D + + + C G+C G C+ TCP
Sbjct: 557 -YC--NCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKC-----PTCPDAC 608
Query: 902 TGSPF-VQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQ 948
T V+CK ++ C + + K C
Sbjct: 609 TFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCT 656
Score = 35.1 bits (80), Expect = 0.21
Identities = 54/325 (16%), Positives = 74/325 (22%), Gaps = 49/325 (15%)
Query: 124 VSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFI 183
+S C+ N P K+C+ K + + C E P G S +
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 184 QCKPVQNEPVYTNPCQPSPCGPNSQCREINSQA-----VCSCLPNYFGSPPACRPECTVN 238
Q + C + R N VC C P + GS C E
Sbjct: 428 QVT-------FDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCEC-SEEDYR 479
Query: 239 SDCLQSKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPL 298
+ + V G C C C G +
Sbjct: 480 PSQQDECSPREGQPVCSQRGECLCGQ----------CVCHSSDFGK---IT-----GKYC 521
Query: 299 ESPPEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGA-----PPNCRPECVQNSECPH 353
E C + QC C C ++ G C
Sbjct: 522 ECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSG 577
Query: 354 DKACINEKCADPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQE 413
C C C+ YG C TCP+ C + E
Sbjct: 578 RGKCECGSCV--CIQPGSYGDTC-----EKCPTCPDACTFK--KECVECKKFDRGALHDE 628
Query: 414 DTCNCVPNAECRDGVCLCLPDYYGD 438
+TCN E L
Sbjct: 629 NTCNRYCRDEIESVKELKDTGKDAV 653
Score = 29.7 bits (66), Expect = 8.6
Identities = 27/128 (21%), Positives = 35/128 (27%), Gaps = 17/128 (13%)
Query: 48 CTCPQGYVGDAFSGCYPKPPEHPCPGSCGQNANCRVINHSPVCSC-KPGFTGEPRIRCNK 106
C C + G C C S G + R C C +PG G+ C K
Sbjct: 547 CLCDSDWTGYY---CNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGD---TCEK 600
Query: 107 IPHGVCVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVEN 166
P C + + ECV N C C + +
Sbjct: 601 CPTCPDAC----------TFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGK 650
Query: 167 HAVMCTCP 174
AV CT
Sbjct: 651 DAVNCTYK 658
Score = 29.7 bits (66), Expect = 8.8
Identities = 33/210 (15%), Positives = 45/210 (21%), Gaps = 33/210 (15%)
Query: 408 EPVIQEDTCNCVPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNK---------- 457
E + C+ N S +
Sbjct: 364 EELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKD 423
Query: 458 -ACIRNKCKNPCTPGTCGEGAICDVVNHAVS-----CTCPPGTTGSPFVQCKTIQYEPVY 511
++ C E N + C C PG G +C Y P
Sbjct: 424 SLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLG-SQCECSEEDYRPSQ 482
Query: 512 TNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVD 571
+ C P P R C C + FG C C + CV
Sbjct: 483 QDECSPREGQPVCSQRGECLCGQCVCHSSDFG--KITGKYC----------ECDDFSCVR 530
Query: 572 PCPGSCGQNANCRVINHSPVCSCKPGFTGE 601
C + C C C +TG
Sbjct: 531 YKGEMCSGHGQC----SCGDCLCDSDWTGY 556
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 38.3 bits (88), Expect = 0.016
Identities = 19/142 (13%), Positives = 33/142 (23%), Gaps = 5/142 (3%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNC---RPECVQNSECPHDKACINEKC 362
N C+ + G C D+ C C + EC C C+N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ--LCVNLEG 58
Query: 363 ADPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNA 422
C G+ + + F + + + N V
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 423 ECRDGVCLCLPDYYGDGYVSCR 444
+ D S +
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQ 140
Score = 35.6 bits (81), Expect = 0.13
Identities = 19/145 (13%), Positives = 31/145 (21%), Gaps = 19/145 (13%)
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDP 747
N C + G C D+ C C + C EC + C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQDPDTC-------- 49
Query: 748 CPGSCGYNAECKVINHTPICTCPQGFIGDAFSG-CYPKPPEPEQPVIQEDTCNCVPNAEC 806
+ C + C C +GF D + C +
Sbjct: 50 -------SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 807 RDGTFLAEQPVIQEDTCNCVPNAEC 831
+ + + N
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIY 127
Score = 34.8 bits (79), Expect = 0.19
Identities = 14/154 (9%), Positives = 28/154 (18%), Gaps = 3/154 (1%)
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC---RPECVMNSECPSHEASRPPPQ 680
N C + G C D+ C C + EC C +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 681 EDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACI 740
+ E P + + + + + N
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 741 NEKCQDPCPGSCGYNAECKVINHTPICTCPQGFI 774
+ ++ + I
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154
Score = 34.8 bits (79), Expect = 0.20
Identities = 25/179 (13%), Positives = 45/179 (25%), Gaps = 20/179 (11%)
Query: 571 DPC-PGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCY-P 628
+ C + G + C + C C GF + RC E ++ C P
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC--------------EDIDECQDP 46
Query: 629 SPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVN 688
C C ++ G C C + P C + + +
Sbjct: 47 DTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 689 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDP 747
+ S + + C + S++ I+ Q P
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161
Score = 32.9 bits (74), Expect = 0.76
Identities = 17/145 (11%), Positives = 32/145 (22%), Gaps = 8/145 (5%)
Query: 466 NPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQ 525
N C G +C+ + C CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-------DIDECQD-PDTCSQL 52
Query: 526 CREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRV 585
C + C C + P + + + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 112
Query: 586 INHSPVCSCKPGFTGEPRIRCNKIP 610
+ + I
Sbjct: 113 NVVALDTEVASNRIYWSDLSQRMIC 137
Score = 32.1 bits (72), Expect = 1.4
Identities = 15/120 (12%), Positives = 26/120 (21%), Gaps = 4/120 (3%)
Query: 1276 CNCVPNAECRDGVCVCLPDYYGDGYVSC--RPECVLNNDCPRNKACIKYKCKNPCVSAVQ 1333
C+ V N C+C + C EC + C + C+ + C
Sbjct: 10 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL--CVNLEGGYKCQCEEG 67
Query: 1334 PVIQEDTCNCVPNAECRDGVCVCLPEYYGDGYVSCRPECVLNNDCPRNKACIKYKCKNPC 1393
+ T C E ++ N +
Sbjct: 68 FQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 127
Score = 32.1 bits (72), Expect = 1.6
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 9/127 (7%)
Query: 149 NPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 208
N C+ G +CN C CP G +C+ + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 209 CREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRV 268
C + C C + P V S ++ + + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
Query: 269 INHSPIC 275
N +
Sbjct: 112 RNVVALD 118
Score = 31.7 bits (71), Expect = 1.6
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 18/135 (13%)
Query: 1071 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCVDP 1130
N C + G + C ++ C C + + C CQ+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---------QLVAQRRCEDIDECQD------ 45
Query: 1131 CPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPPQEPICTCKPGYTGDALS 1190
P TC Q C + C C+ G+ D + + + S
Sbjct: 46 -PDTCSQL--CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 1191 YCNRIPPPPPPQDDV 1205
+ P +
Sbjct: 103 EYTSLIPNLRNVVAL 117
Score = 31.7 bits (71), Expect = 1.7
Identities = 12/132 (9%), Positives = 23/132 (17%), Gaps = 8/132 (6%)
Query: 1210 NPCYPSPCGLYSECRNVNGAPSCSCLINYIGSPPNC---RPECIQNSLLLGQSLLRTHS- 1265
N C + G C ++ C C + EC +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 1266 ----AVQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPRNKACIK 1321
+ T C + ++ N +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 1322 YKCKNPCVSAVQ 1333
S +
Sbjct: 121 VASNRIYWSDLS 132
Score = 31.7 bits (71), Expect = 1.9
Identities = 19/164 (11%), Positives = 33/164 (20%), Gaps = 14/164 (8%)
Query: 746 DPC-PGSCGYNAECKVINHTPICTCPQGFIGDAFSGCYPKPPEPEQPVIQEDTCNCVPNA 804
+ C + G + C + C CP GF A C + + N
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 805 ECRDGTFLAEQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPSNK 864
+C+ E + T C + ++ N
Sbjct: 61 KCQCE----EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 865 ACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQ 908
D+ + T G
Sbjct: 117 LDTEVASNRIY---------WSDLSQRMICSTQLDRAHGVSSYD 151
Score = 31.4 bits (70), Expect = 2.6
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 3/127 (2%)
Query: 873 NPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPI---QNEPVYTNPCQPSPCGP 929
N C+ G VC+ + C CP G +C+ I Q+ + C G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 930 NSQCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSD 989
QC E + P + + Y P R ++++
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTE 120
Query: 990 CPLDKAC 996
++
Sbjct: 121 VASNRIY 127
Score = 30.6 bits (68), Expect = 4.3
Identities = 22/134 (16%), Positives = 34/134 (25%), Gaps = 18/134 (13%)
Query: 254 DPC-PGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPC-VPS 311
+ C G + C + C C GF A C E ++ C P
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC-------------EDIDECQDPD 47
Query: 312 PCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGSCG 371
C C ++ G C C + P S +E S
Sbjct: 48 TCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC-KAVGSIAYLFFTNRHEVRKMTLDRSEY 104
Query: 372 YGAVCTVINHSPIC 385
+ + N +
Sbjct: 105 TSLIPNLRNVVALD 118
Score = 30.2 bits (67), Expect = 6.1
Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 18/136 (13%)
Query: 513 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDP 572
N C + G + C ++ C C + + C C +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF---------QLVAQRRCEDIDECQD------ 45
Query: 573 CPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCG 632
P +C Q C + C C+ GF +P + K
Sbjct: 46 -PDTCSQL--CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 633 PYSQCRDIGGSPSCSC 648
Y+ +
Sbjct: 103 EYTSLIPNLRNVVALD 118
Score = 29.4 bits (65), Expect = 9.5
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 22/164 (13%)
Query: 196 NPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDP 255
N C + G + C ++ C C + C +C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQD------------ 45
Query: 256 CPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGP 315
P TC Q C + C C+ GF D + +
Sbjct: 46 -PDTCSQL--CVNLEGGYKCQCEEGFQLDP----HTKACKAVGSIAYLFFTNRHEVRKMT 98
Query: 316 YAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACIN 359
+ + P+ + + R S+ ++
Sbjct: 99 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 142
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 38.3 bits (88), Expect = 0.022
Identities = 41/301 (13%), Positives = 66/301 (21%), Gaps = 36/301 (11%)
Query: 429 CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRN-KCKNPCTPGTCGEGAICDVVNHAVS 487
+ + V+ D P N + G C G +C VV+
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 488 CTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPA 547
C C + G C +++ + S S
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKT 264
Query: 548 CRPECTV----NSDCPLDKACVNQKCV-----DPCPGSCGQNANCRVINHSPVCSCKPGF 598
+ + S ++ A N N + K
Sbjct: 265 LQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTR 324
Query: 599 TGEPRI----RCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
+ + Y +GGSPS + LP
Sbjct: 325 NLRQVTISVDGILTTTGYTQEDYTMLGSDDFFY------------VGGSPSTADLPGSPV 372
Query: 655 SPP--NCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSC 712
S C E V + E SR Q D ++ C + I S
Sbjct: 373 SNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESF 432
Query: 713 L 713
+
Sbjct: 433 I 433
Score = 38.3 bits (88), Expect = 0.023
Identities = 17/149 (11%), Positives = 32/149 (21%), Gaps = 22/149 (14%)
Query: 73 GSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCRPECVL 132
G + + + F G + + V
Sbjct: 127 GLPPELRAAALKLTLASVREREPFKG-------------WIRDVRVQSSLALPVDSGEVK 173
Query: 133 NSDCPSNKACIRN-KCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNE 191
D P N + G C G +C+V + +C C
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ------ 227
Query: 192 PVYTNPCQPSPCGPNSQCREINSQAVCSC 220
+ G C +++ + S
Sbjct: 228 --GKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 36.4 bits (83), Expect = 0.093
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 159 GAICNVE--NHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQA 216
G I +V + + + + C C ++ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 217 VCSC-LPNYFGSPPACRPECTVNSDCLQSKACFNQ 250
VC C + G + E + + C++
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 35.2 bits (80), Expect = 0.20
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 9/105 (8%)
Query: 836 CVCLPDYYGDGYVSCRPECVLNNDCPSNKACIRN-KCKNPCVPGTCGQGAVCDVINHAVM 894
+ + V +D P N + G C G VC V++ +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 895 CTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQ 939
C C + G C ++++
Sbjct: 213 CDCSRTGFRGKDCSQ--------GKEEYIATFKGSEYFCYDLSQN 249
Score = 34.8 bits (79), Expect = 0.26
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
Query: 274 ICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQCRDINGSPSCSC-LP 332
+ + V + PP+ SP E C C ++ C C
Sbjct: 159 VQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRT 218
Query: 333 NYIGAPPNCRPECVQNSECPHDKACIN 359
+ G + E + + C +
Sbjct: 219 GFRGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 34.8 bits (79), Expect = 0.30
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 3/118 (2%)
Query: 1007 GSCGQNANCRVINHSPVCSCKPGFTGEPR-IRCNRIHAVMCTCPPGTTGSPFVQCKPIQN 1065
G + + + F G R +R A+ +
Sbjct: 127 GLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPV-DSGEVKLDDEPPNSGGGS 185
Query: 1066 EPVYTNPCQPSPCGPNSQCREVNKQAVCSC-LPNYFGSPPACRPECTVNSDCPLNKAC 1122
+ C C V+ QAVC C + G + E + + C
Sbjct: 186 PCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFC 243
Score = 33.7 bits (76), Expect = 0.53
Identities = 10/58 (17%), Positives = 14/58 (24%)
Query: 192 PVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFN 249
+ CQ C C + C C F P P T + +
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 1071
Score = 32.5 bits (73), Expect = 1.5
Identities = 12/69 (17%), Positives = 14/69 (20%)
Query: 620 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPP 679
P C C C SC C P P + + P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP 1073
Query: 680 QEDVPEPVN 688
D P
Sbjct: 1074 PNDRPSTRA 1082
Score = 32.5 bits (73), Expect = 1.5
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 3/95 (3%)
Query: 476 GAICDVV--NHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQA 533
G I DV + + C C V+ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 534 VCSC-LPNYFGSPPACRPECTVNSDCPLDKACVNQ 567
VC C + G + E + + + C +
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 32.1 bits (72), Expect = 1.6
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 509 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 552
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 32.1 bits (72), Expect = 1.8
Identities = 13/59 (22%), Positives = 18/59 (30%)
Query: 621 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPP 679
E PC +PC CRD C C R V++ + + P
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPV 675
Score = 31.7 bits (71), Expect = 2.2
Identities = 16/123 (13%), Positives = 26/123 (21%), Gaps = 16/123 (13%)
Query: 575 GSCGQNANCRVINHSPVCSCKPGFTGEPR-IRCNKIPPRPPPQEDV-------------- 619
G + + + F G R +R P +V
Sbjct: 127 GLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSP 186
Query: 620 PEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPNYIGSPPNCRPECVMNSECPSHEASRPP 678
E C C + C C + G + E + + S
Sbjct: 187 CEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Query: 679 PQE 681
Q
Sbjct: 247 SQN 249
Score = 31.7 bits (71), Expect = 2.4
Identities = 9/46 (19%), Positives = 9/46 (19%)
Query: 684 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVM 729
P C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 31.7 bits (71), Expect = 2.6
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 1067 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPEC 1110
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.4 bits (70), Expect = 2.9
Identities = 8/44 (18%), Positives = 8/44 (18%)
Query: 302 PEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPEC 345
C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.0 bits (69), Expect = 3.7
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 339 PNCRPECVQNSECPHDKACINEKCADPCLGS-CGYGAVCTVINHSPICTCPE-GFIGDAF 396
P E + E P+ + + G C G VC+V++ +C C GF G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 397 SSCYP 401
S
Sbjct: 226 SQGKE 230
Score = 31.0 bits (69), Expect = 3.9
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 941 PVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPEC 984
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.0 bits (69), Expect = 4.4
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 188 VQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSD 240
PC +PC N CR+ ++ VC C + R ++ D
Sbjct: 612 PSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 30.6 bits (68), Expect = 4.5
Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 1/61 (1%)
Query: 682 DVPEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPNYIGSPPNCRPECVMNSECPSHEACI 740
E C C + C C + G + E + + S C
Sbjct: 185 SPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCY 244
Query: 741 N 741
+
Sbjct: 245 D 245
Score = 30.6 bits (68), Expect = 5.0
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 301 PPEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPEC 345
E PC+ +PC CRD C C +C E
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 30.6 bits (68), Expect = 5.6
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 511 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSD 557
PC +PC N CR+ ++ VC C + R ++ D
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 30.2 bits (67), Expect = 5.9
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 911 PIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSC- 969
P+ + V + P+ G + + C C V+ Q+VC C
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEA---------GEEGEGGVCLNGGVCSVVDDQAVCDCS 216
Query: 970 LPNYFGSPPACRPECTVNSDCPLDKACVNQ 999
+ G + E + + + C +
Sbjct: 217 RTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 30.2 bits (67), Expect = 6.0
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 1104 PACRPECTVNSDCPLNKACQNQKCVDPC-PGTCGQNANCKVINHSPICTC-KPGYTGDAL 1161
P E ++ + P + + + G C C V++ +C C + G+ G
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 1162 SYCNRIPPP 1170
S
Sbjct: 226 SQGKEEYIA 234
Score = 30.2 bits (67), Expect = 6.8
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 978 PACRPECTVNSDCPLDKACVNQKCVDPC-PGSCGQNANCRVINHSPVCSC-KPGFTGEP 1034
P E ++ + P + + G C C V++ VC C + GF G+
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKD 224
Score = 30.2 bits (67), Expect = 7.0
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 1064 QNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSD 1115
PC +PC N CR+ + VC C + R ++ D
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
Score = 29.8 bits (66), Expect = 9.3
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 943 YTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSD 989
PC +PC N CR+ + VC C + R ++ D
Sbjct: 618 TAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYD 664
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 38.0 bits (87), Expect = 0.026
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 11/149 (7%)
Query: 857 NNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEP 916
++ S + R +C + C+ + + V C+ +
Sbjct: 12 LDESLSAGSVQRARCASRCLSLQITRIS----------AFFQHFQNNGSLVWCQNHKQCS 61
Query: 917 VYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGS 976
PC+ S QC+ + + + C V KQ C G
Sbjct: 62 KCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLV-KQGDCPAPEKASGF 120
Query: 977 PPACRPECTVNSDCPLDKACVNQKCVDPC 1005
AC C V+++C K C + C C
Sbjct: 121 AAACVESCEVDNECSGVKKCCSNGCGHTC 149
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 35.7 bits (83), Expect = 0.029
Identities = 28/165 (16%), Positives = 43/165 (26%), Gaps = 42/165 (25%)
Query: 156 CGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQ 215
C E E V N+ + C+ SPC +C++ +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEF---------WNKYKDGDQCETSPCQNQGKCKDGLGE 62
Query: 216 AVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRVINHSPIC 275
C+CL + G E C + C +S +C
Sbjct: 63 YTCTCLEGFEGK----NCELFTRKLCS--------------LDNGDCDQFCHEEQNSVVC 104
Query: 276 TCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQCR 320
+C G+T + P P PCG R
Sbjct: 105 SCARGYTLA---DNGK------------ACIPTGPYPCGKQTLER 134
Score = 33.8 bits (78), Expect = 0.13
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 18/90 (20%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
+ C SPC +C+D G +C+CL + G NC + C+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCSL 86
Query: 365 PCLGSCGYGAVCTVINHSPICTCPEGFIGD 394
C +S +C+C G+
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 31.5 bits (72), Expect = 0.71
Identities = 30/173 (17%), Positives = 45/173 (26%), Gaps = 48/173 (27%)
Query: 466 NPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQ 525
C TC +V + + C+ SPC +
Sbjct: 10 RECMEETCSYEEAREV-----FEDSDKTNEF---------WNKYKDGDQCETSPCQNQGK 55
Query: 526 CREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRV 585
C++ + C+CL + G E C + + C
Sbjct: 56 CKDGLGEYTCTCLEGFEGK----NCELFTRKLCS--------------LDNGDCDQFCHE 97
Query: 586 INHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCR 638
+S VCSC G+T K P P PCG + R
Sbjct: 98 EQNSVVCSCARGYTLA---DNGK-------------ACIPTGPYPCGKQTLER 134
Score = 30.3 bits (69), Expect = 2.0
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 27/112 (24%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQED 682
+ C SPC +C+D G +C+CL + G NC +
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--NC--------------------ELF 79
Query: 683 VPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECP 734
+ C C + S CSC Y + + C+ P
Sbjct: 80 TRK---LCSLDNGDCDQFCHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP 126
Score = 29.2 bits (66), Expect = 4.0
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 875 CVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCR 934
C C ++V+C+C G T + P P PCG + R
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTL---------ADNGKACIPTGPYPCGKQTLER 134
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.0 bits (86), Expect = 0.036
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 18/103 (17%)
Query: 513 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDP 572
+PC PC N C++ C+C P Y G S+C +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEG------------SNC----ELAKNECHPE 49
Query: 573 CPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPP 615
C C S CSC G+ + +
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 37.0 bits (86), Expect = 0.041
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC---RPECVMNSECPSHEACINEKC 744
+PC PC C+D +C+C P Y GS NC + EC C+ +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NCELAKNECHPERTDGCQHFCLPGQE 63
Query: 745 QDPCPGSCGYNAECKVINHTPICTCPQGFI 774
C + GY P C G +
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACGVL 93
Score = 36.6 bits (85), Expect = 0.048
Identities = 26/130 (20%), Positives = 37/130 (28%), Gaps = 31/130 (23%)
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDV 683
+PC PC C+D +C+C P Y GS NC E
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELA------------------- 42
Query: 684 PEPVNPCYPSPCGPYSQ-CRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINE 742
N C+P C S +CSC Y + + C +
Sbjct: 43 ---KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACG----VLTS 95
Query: 743 KCQDPCPGSC 752
+ + P
Sbjct: 96 EKRAPDLQDL 105
Score = 36.2 bits (84), Expect = 0.057
Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 18/112 (16%)
Query: 945 NPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDP 1004
+PC PC N C++ C+C P Y G S+C +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEG------------SNC----ELAKNECHPE 49
Query: 1005 CPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSP 1056
C C S CSC G+ + H +
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 35.5 bits (82), Expect = 0.12
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADP 365
+PC+ PC C+D +C+C P Y G+ NC E +N P C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLPG 61
Query: 366 CLG---SCGYGAVCTVINHSPICTCP 388
SC G + +
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQ 87
Score = 33.5 bits (77), Expect = 0.44
Identities = 21/94 (22%), Positives = 25/94 (26%), Gaps = 10/94 (10%)
Query: 466 NPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQ 525
+PC C C +CTC PG GS C+ N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCELA------KNECHPERTDGCQH 56
Query: 526 -CREVNHQAVCSCLPNYFGSPPACRPECTVNSDC 558
C CSC Y + C
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 33.5 bits (77), Expect = 0.48
Identities = 21/94 (22%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 149 NPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQ 208
+PC+ C C CTC PG GS C+ + N C P
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS---NCE------LAKNECHPERTDGCQH 56
Query: 209 -CREINSQAVCSCLPNYFGSPPACRPECTVNSDC 241
C CSC Y + C
Sbjct: 57 FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 32.8 bits (75), Expect = 0.75
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 1321 KYKCKNPCVSAVQPVIQEDTCNCVPNAECRDGV----CVCLPEYYGDGYVSCRPECVLNN 1376
+YK +PC+S QP C+ N C+D + C C P Y G + EC
Sbjct: 1 RYKGGSPCIS--QP--------CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC---- 46
Query: 1377 DCPRNKACIKYKCKNPCVHPICSCPQGY 1404
P ++ C CSC QGY
Sbjct: 47 -HPERTDGCQHFCLPGQESYTCSCAQGY 73
Score = 32.4 bits (74), Expect = 0.95
Identities = 20/118 (16%), Positives = 28/118 (23%), Gaps = 18/118 (15%)
Query: 196 NPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDP 255
+PC PC N C++ C+C P Y G S+C +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEG------------SNC----ELAKNECHPE 49
Query: 256 CPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPC 313
C C S C+C G+
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 32.4 bits (74), Expect = 1.0
Identities = 21/103 (20%), Positives = 27/103 (26%), Gaps = 18/103 (17%)
Query: 1071 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCVDP 1130
+PC PC N C++ C+C P Y GS N +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS----------------NCELAKNECHPE 49
Query: 1131 CPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPP 1173
C C S C+C GY
Sbjct: 50 RTDGCQH--FCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 30.8 bits (70), Expect = 3.5
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 1278 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVLNNDCPRNKACIKYKCKNPCVSAVQ 1333
C+ N C+D + C C P Y G + EC C+ + C A
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQG 72
Query: 1334 PVIQEDTCNCVPNAECRDGVCVC 1356
+ ED CVP+ +C GV
Sbjct: 73 YRLGEDHKQCVPHDQCACGVLTS 95
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 32.0 bits (72), Expect = 0.054
Identities = 17/24 (70%), Positives = 24/24 (100%)
Query: 724 RPECVMNSECPSHEACINEKCQDP 747
RPECV+NS+CPS++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 32.0 bits (72), Expect = 0.062
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 127 RPECVLNSDCPSNKACIRNKCKNP 150
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.3 bits (70), Expect = 0.12
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 851 RPECVLNNDCPSNKACIRNKCKNP 874
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.17
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 549 RPECTVNSDCPLDKACVNQKCVDP 572
RPEC +NSDCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.17
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 981 RPECTVNSDCPLDKACVNQKCVDP 1004
RPEC +NSDCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.1 bits (67), Expect = 0.23
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 1107 RPECTVNSDCPLNKACQNQKCVDP 1130
RPEC +NSDCP N+AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.7 bits (66), Expect = 0.38
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 1304 RPECVLNNDCPRNKACIKYKCKNP 1327
RPECVLN+DCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.7 bits (66), Expect = 0.38
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 1369 RPECVLNNDCPRNKACIKYKCKNP 1392
RPECVLN+DCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.49
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 342 RPECVQNSECPHDKACINEKCADP 365
RPECV NS+CP ++AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.51
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 444 RPECVQNSDCPRNKACIRNKCKNP 467
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 27.4 bits (60), Expect = 2.3
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 232 RPECTVNSDCLQSKACFNQKCVDP 255
RPEC +NSDC ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 36.8 bits (84), Expect = 0.061
Identities = 29/189 (15%), Positives = 48/189 (25%), Gaps = 3/189 (1%)
Query: 416 CNCVPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGE 475
A +G + + C C + C N P +
Sbjct: 165 GKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTK 224
Query: 476 GAICDVVNHAVSC--TCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQA 533
C C TCPP +C + + C+ S Q N++
Sbjct: 225 CVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKC 284
Query: 534 VCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCS 593
+ C Y + CP + + S + C VIN S + +
Sbjct: 285 IPECPSGYTMNSSNLLCTP-CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIIN 343
Query: 594 CKPGFTGEP 602
+ G
Sbjct: 344 IRGGNNLAA 352
Score = 34.1 bits (77), Expect = 0.43
Identities = 34/242 (14%), Positives = 54/242 (22%), Gaps = 23/242 (9%)
Query: 917 VYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGS 976
+ T +NK P + C
Sbjct: 128 LATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSH 187
Query: 977 PPACRPECTVNSDCPLDKACVNQKCVDPC--PGSCGQNANCRVINHSPVCSCKPGFTGEP 1034
P + C + C + +C+ C P + CR C
Sbjct: 188 CQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRC---------- 237
Query: 1035 RIRCNRIHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCS 1094
+ TCPP +C + C+ S Q N + +
Sbjct: 238 ----------VETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPE 287
Query: 1095 CLPNYFGSPPACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKP 1154
C Y + CP + + + C VIN S I +
Sbjct: 288 CPSGYTMNSSNLLCTP-CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRG 346
Query: 1155 GY 1156
G
Sbjct: 347 GN 348
Score = 32.5 bits (73), Expect = 1.0
Identities = 37/214 (17%), Positives = 54/214 (25%), Gaps = 25/214 (11%)
Query: 69 HPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCRP 128
CPG+ NC G+ RC H VC G
Sbjct: 157 DICPGTAKGKTNC----------PATVINGQFVERCWTHSHCQKVCPTICKSHGC----- 201
Query: 129 ECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMC--TCPPGTTGSPFIQCK 186
++ + C P P C C C TCPP +C
Sbjct: 202 ----TAEGLCCHSECLGNCSQPDDPTKCVA---CRNFYLDGRCVETCPPPYYHFQDWRCV 254
Query: 187 PVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKA 246
+ C+ S Q N++ + C Y + C +
Sbjct: 255 NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP-CLGPCPKVCH 313
Query: 247 CFNQKCVDPCPGTCGQNANCRVINHSPICTCKPG 280
+ + + C VIN S I + G
Sbjct: 314 LLEGEKTIDSVTSAQELRGCTVINGSLIINIRGG 347
Score = 32.5 bits (73), Expect = 1.1
Identities = 28/186 (15%), Positives = 47/186 (25%), Gaps = 4/186 (2%)
Query: 849 SCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQ 908
+ C ++ C + C C C +C C+ P T V
Sbjct: 171 ATVINGQFVERCWTHSHC-QKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKC--VA 227
Query: 909 CKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCS 968
C+ + C P + C+ S Q N + +
Sbjct: 228 CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPE 287
Query: 969 CLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKP 1028
C Y + CP + + S + C VIN S + + +
Sbjct: 288 CPSGYTMNSSNLLCTP-CLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRG 346
Query: 1029 GFTGEP 1034
G
Sbjct: 347 GNNLAA 352
Score = 31.7 bits (71), Expect = 2.0
Identities = 34/226 (15%), Positives = 53/226 (23%), Gaps = 18/226 (7%)
Query: 971 PNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGF 1030
N A + + +N+ + C C A + + V +
Sbjct: 121 KNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVING---- 176
Query: 1031 TGEPRIRCNRIHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQ 1090
+ RC CP + N QP CR
Sbjct: 177 --QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLD 234
Query: 1091 AVC--SCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSP 1148
C +C P Y+ + D + C+N C N C
Sbjct: 235 GRCVETCPPPYYHFQDWRCVNFSFCQDL--HHKCKNS-RRQGCHQYVIHNNKC------- 284
Query: 1149 ICTCKPGYTGDALSYCNRIPPPPPPQEPICTCKPGYTGDALSYCNR 1194
I C GYT ++ + P P+ S
Sbjct: 285 IPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQEL 330
Score = 31.0 bits (69), Expect = 3.3
Identities = 22/178 (12%), Positives = 32/178 (17%), Gaps = 19/178 (10%)
Query: 431 CLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSCTC 490
++ + K N C + C C
Sbjct: 140 VEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQ-------KVC 192
Query: 491 PPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVC--SCLPNYFGSPPAC 548
P + N QP CR C +C P Y+
Sbjct: 193 PTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWR 252
Query: 549 RPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRC 606
+ D C N C + C G+T
Sbjct: 253 CVNFSFCQDL---HHKCKNSRRQGCHQYVIHNNKC-------IPECPSGYTMNSSNLL 300
Score = 29.8 bits (66), Expect = 7.0
Identities = 29/202 (14%), Positives = 48/202 (23%), Gaps = 14/202 (6%)
Query: 249 NQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPC 308
N++C D CPGT NC P F + + +
Sbjct: 152 NEECGDICPGTAKGKTNC------PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEG 205
Query: 309 VPSPCGPYAQCRDINGSPSC-SCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCL 367
+ C + C +C Y+ C C D C+N
Sbjct: 206 LCCHSECLGNCSQPDDPTKCVACRNFYLD--GRCVETCPPPYYHFQDWRCVNFSFCQDLH 263
Query: 368 GSCGYGAVCTVINHSP-----ICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNA 422
C + I CP G+ ++ + P V ++
Sbjct: 264 HKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS 323
Query: 423 ECRDGVCLCLPDYYGDGYVSCR 444
G ++ R
Sbjct: 324 VTSAQELRGCTVINGSLIINIR 345
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.0 bits (81), Expect = 0.064
Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 34/126 (26%)
Query: 196 NPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDP 255
+ C+P+PC C++ + C C + G C +++ C Q C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATCNIKNGRCKQFC--- 99
Query: 256 CPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGP 315
+ +C+C G+ + P VP PCG
Sbjct: 100 ----------KTGADSKVLCSCTTGYRLA---PDQKS------------CKPAVPFPCGR 134
Query: 316 YAQCRD 321
+
Sbjct: 135 VSVSHS 140
Score = 33.9 bits (78), Expect = 0.15
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 148 KNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNS 207
+ C P C G +C + ++ C C G G C+ +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCELDATC------NIKNGRCKQF 98
Query: 208 QCREINSQAVCSCLPNYFGS 227
+S+ +CSC Y +
Sbjct: 99 CKTGADSKVLCSCTTGYRLA 118
Score = 33.1 bits (76), Expect = 0.23
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 465 KNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNS 524
+ C P C G +C ++ C C G G C+ +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---KNCELD------ATCNIKNGRCKQF 98
Query: 525 QCREVNHQAVCSCLPNYFGS 544
+ + +CSC Y +
Sbjct: 99 CKTGADSKVLCSCTTGYRLA 118
Score = 32.7 bits (75), Expect = 0.36
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 37/128 (28%)
Query: 513 NPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDP 572
+ C+P+PC C++ + C C + G C +++ C
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC-------------- 88
Query: 573 CPGSCGQNANCRV-INHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPC 631
+ C+ + +CSC G+ K P P PC
Sbjct: 89 NIKNGRCKQFCKTGADSKVLCSCTTGYRLA---PDQK-------------SCKPAVPFPC 132
Query: 632 GPYSQCRD 639
G S
Sbjct: 133 GRVSVSHS 140
Score = 32.3 bits (74), Expect = 0.42
Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
+ C P+PC C+D S C C + G C ++ C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC----------NIK 91
Query: 365 PCLGSCGYGAVCTVINHSPICTCPEGFIGD 394
T + +C+C G+
Sbjct: 92 NG---RCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 29.6 bits (67), Expect = 3.3
Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 34/115 (29%)
Query: 418 CVPNAECRDGV----CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTC 473
C+ C+D + C C + G C ++ C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC--------------NIKNGR 94
Query: 474 GEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCRE 528
+ + V C+C G + + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLA---PDQKS------CKPAVPFPCGRVSVSHS 140
Score = 29.2 bits (66), Expect = 4.4
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 34/118 (28%)
Query: 825 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTC 880
C+ C+D + C C + G C L+ C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC----------NIKNG----R 94
Query: 881 GQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNK 938
+ + V+C+C G + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRL---------APDQKSCKPAVPFPCGRVSVSHSPTT 143
Score = 29.2 bits (66), Expect = 4.7
Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 18/101 (17%)
Query: 253 VDPC-PGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPS 311
D C P C C+ +S C C+ GF G C + +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK---NCE------------LDATCNIKN 92
Query: 312 PCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECP 352
+ CSC Y A + C P
Sbjct: 93 GRCKQFCKTGADSKVLCSCTTGYRLA--PDQKSCKPAVPFP 131
Score = 28.5 bits (64), Expect = 7.8
Identities = 18/112 (16%), Positives = 26/112 (23%), Gaps = 28/112 (25%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQED 682
+ C P+PC C+D S C C + G NC +
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG--KNCELD-------------------- 85
Query: 683 VPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECP 734
+ CSC Y + + C P
Sbjct: 86 ----ATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLA--PDQKSCKPAVPFP 131
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 34.7 bits (80), Expect = 0.065
Identities = 30/150 (20%), Positives = 44/150 (29%), Gaps = 33/150 (22%)
Query: 197 PCQPSPCGPNSQCREINSQA--VCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVD 254
C P+PC C + C C + P C+ + +
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTD------PNCSSVVEVASDEEEPTS--AG 53
Query: 255 PC-PGTCGQNANCRVINHSP-------ICTCKPGFTGDALVYCNRIPPSRPLESPPEYVN 306
PC P C C + +C C GF G +C +N
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQ------------HNIN 98
Query: 307 PCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
C PC C D+ + SC C ++G
Sbjct: 99 ECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 34.7 bits (80), Expect = 0.066
Identities = 38/151 (25%), Positives = 51/151 (33%), Gaps = 32/151 (21%)
Query: 254 DPC-PGTCGQNANC--RVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVP 310
D C P C C + + S C C GFT C+ + E P PC P
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDP---NCSSVVEVASDEEEPTSAGPCTP 57
Query: 311 SPC-------GPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCA 363
+PC A D C C + G +C+ INE
Sbjct: 58 NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG--IHCQHN-------------INECEV 102
Query: 364 DPCLGSCGYGAVCTVINHSPICTCPEGFIGD 394
+PC G +CT + + C CP F+G
Sbjct: 103 EPCK----NGGICTDLVANYSCECPGEFMGR 129
Score = 33.5 bits (77), Expect = 0.17
Identities = 33/158 (20%), Positives = 48/158 (30%), Gaps = 40/158 (25%)
Query: 571 DPCPGS-CGQNANC--RVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCY 627
D C + C C + + S C C GFT C+ E+ P PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDP---NCS-SVVEVASDEEEPTSAGPCT 56
Query: 628 PSPC-------GPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQ 680
P+PC + D C C + G +C+
Sbjct: 57 PNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG--IHCQ-------------------- 94
Query: 681 EDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
+N C PC C D+ + SC C ++G
Sbjct: 95 ----HNINECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 33.5 bits (77), Expect = 0.19
Identities = 30/151 (19%), Positives = 42/151 (27%), Gaps = 34/151 (22%)
Query: 514 PCQPSPCGPNSQCREVNHQA--VCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVD 571
C P+PC C C C + P C+ + D+
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTD------PNCSSVVEVASDEEEPTS--AG 53
Query: 572 PCPGS-CGQNANCRVINHSPV-------CSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPV 623
PC + C C + C C GF G C +
Sbjct: 54 PCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI---HCQ-------------HNI 97
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
N C PC C D+ + SC C ++G
Sbjct: 98 NECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Score = 32.8 bits (75), Expect = 0.35
Identities = 34/148 (22%), Positives = 46/148 (31%), Gaps = 33/148 (22%)
Query: 467 PCTPGTCGEGAIC--DVVNHAVSCTCPPGTTGS---PFVQCKTIQYEPVYTNPCQPSPCG 521
C P C G IC + + + SC CP G T V+ + + EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 522 PNSQCREVNHQA-------VCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCP 574
C VC C + G C N ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNG------IHCQHN--------------INECE 101
Query: 575 GS-CGQNANCRVINHSPVCSCKPGFTGE 601
C C + + C C F G
Sbjct: 102 VEPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 29.3 bits (66), Expect = 4.4
Identities = 27/127 (21%), Positives = 38/127 (29%), Gaps = 25/127 (19%)
Query: 874 PCVPGTCGQGAVC--DVINHAVMCTCPPGTTGS---PFVQCKPIQNEPVYTNPCQPSPCG 928
C P C G +C + + + C CP G T V+ + EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 929 PNSQCREVNKQAPVY--------------------TNPCQPSPCGPNSQCREVNKQSVCS 968
C N C+ PC C ++ C
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCE 121
Query: 969 CLPNYFG 975
C + G
Sbjct: 122 CPGEFMG 128
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 36.4 bits (84), Expect = 0.073
Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 14/129 (10%)
Query: 845 DGYVSCRP-ECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTG 903
+ S + + D S + N C+NP +G C V P
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEGVWCYV------AGKPGDFGY 87
Query: 904 SPFVQCKPIQNEPV---YTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCRE 960
C+ E + G + P T + CG +
Sbjct: 88 CDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPA-TFGSGEADCGLRPLFEK 146
Query: 961 VNKQSVCSC 969
+ +
Sbjct: 147 KSLEDKTER 155
Score = 31.4 bits (71), Expect = 2.4
Identities = 19/161 (11%), Positives = 31/161 (19%), Gaps = 40/161 (24%)
Query: 121 DGYVSCRP-ECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTG 179
+ S + + D S + N C+NP EG C V P
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEGVWCYV------AGKPGD--- 84
Query: 180 SPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNS 239
N C+ + G +
Sbjct: 85 ----------FGYCDLNYCEEAVEEETGD-----------------GLDEDSDRAIEGAT 117
Query: 240 DCLQSKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPG 280
+ + FN CG + +
Sbjct: 118 ATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELL 158
Score = 31.0 bits (70), Expect = 3.2
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 6/138 (4%)
Query: 514 PCQP-SPCGPNSQCREVNHQAVCSCLPNYFGSPPACR--PECTVNSDCPLDKACVNQKCV 570
PC + + + + + + N+ +P C V C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 571 DPCPGSCGQN---ANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCY 627
+ G + R I + S F + P + +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 628 PSPCGPYSQCRDIGGSPS 645
Y R + GS +
Sbjct: 155 RELLESYIDGRIVEGSDA 172
Score = 30.6 bits (69), Expect = 4.7
Identities = 19/169 (11%), Positives = 36/169 (21%), Gaps = 41/169 (24%)
Query: 438 DGYVSCRP-ECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTG 496
+ S + ++ D + N C+NP EG C V P
Sbjct: 37 LAWASAQAKALSKHQDFNSAVQLVENFCRNP---DGDEEGVWCYV------AGKPGD--- 84
Query: 497 SPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNS 556
+ N C+ + + + R +
Sbjct: 85 ----------FGYCDLNYCEEAVEEETGDGLD----------------EDSDRAIEGATA 118
Query: 557 DCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTG-EPRI 604
+ N CG + + + + RI
Sbjct: 119 TSE-YQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGRI 166
Score = 29.8 bits (67), Expect = 7.4
Identities = 11/125 (8%), Positives = 23/125 (18%), Gaps = 8/125 (6%)
Query: 694 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCR--------PECVMNSECPSHEACINEKCQ 745
PC ++ + S CR C + + C C+
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 746 DPCPGSCGYNAECKVINHTPICTCPQGFIGDAFSGCYPKPPEPEQPVIQEDTCNCVPNAE 805
+ G + T + + + + E
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 806 CRDGT 810
Sbjct: 155 RELLE 159
Score = 29.8 bits (67), Expect = 7.7
Identities = 12/111 (10%), Positives = 19/111 (17%), Gaps = 15/111 (13%)
Query: 70 PC--PGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCR 127
C P + C V F C + D D +
Sbjct: 63 FCRNPDGDEEGVWC------YVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGA 116
Query: 128 PECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTT 178
S N CG + ++ +
Sbjct: 117 T-------ATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLES 160
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 35.3 bits (80), Expect = 0.15
Identities = 29/204 (14%), Positives = 51/204 (25%), Gaps = 8/204 (3%)
Query: 74 SCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCRPECVLN 133
S +N + + + SC+ P C + + C +C
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCW------GAGEENCQKLTKIICAQQCSGR 198
Query: 134 SDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMC--TCPPGTTGSPFIQCKPVQNE 191
S C N+C C + +C C TCPP +P V E
Sbjct: 199 CRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPE 258
Query: 192 PVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQK 251
Y+ P + + V +C + + +C +
Sbjct: 259 GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGI 318
Query: 252 CVDPCPGTCGQNANCRVINHSPIC 275
+ N + I
Sbjct: 319 GEFKDSLSINATNIKHFKNCTSIS 342
Score = 34.5 bits (78), Expect = 0.26
Identities = 25/176 (14%), Positives = 44/176 (25%), Gaps = 4/176 (2%)
Query: 421 NAECRDGVCLCLPDYYGDGYVS--CRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAI 478
+ C +G C + C +C C N+C CT + +
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 479 CDVVNHAVSC--TCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCS 536
C +C TCPP +P + E Y+ P + + V +
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 537 CLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVC 592
C + + +C S N + +
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 32.6 bits (73), Expect = 1.2
Identities = 26/202 (12%), Positives = 46/202 (22%), Gaps = 10/202 (4%)
Query: 955 NSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNAN 1014
+S + L + P+C + + C C G C +
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSP 204
Query: 1015 CRVINHSPVCSCKPGFTGEPRIRC------NRIHAVMCTCPPGTTGSPFVQCKPIQNEPV 1068
++ C G TG C TCPP +P + E
Sbjct: 205 SDCCHNQ----CAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGK 260
Query: 1069 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCV 1128
Y+ P + + V +C + + +C
Sbjct: 261 YSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGE 320
Query: 1129 DPCPGTCGQNANCKVINHSPIC 1150
+ N + I
Sbjct: 321 FKDSLSINATNIKHFKNCTSIS 342
Score = 30.3 bits (67), Expect = 5.0
Identities = 26/205 (12%), Positives = 45/205 (21%), Gaps = 12/205 (5%)
Query: 184 QCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQ 243
+ + C P+ + C +C+
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWG---AGEENCQKLTKIICAQQCSGRCRGKS 203
Query: 244 SKACFNQKCVDPCPGTCGQN-ANCRVINHSPIC--TCKPGFTGDALVYCNRIPPSRPLES 300
C + +C C G + CR C TC P + Y + P
Sbjct: 204 PSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSF 263
Query: 301 PPEYVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINE 360
V C P +GS +C + + +C +
Sbjct: 264 GATCVKKC------PRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIG 317
Query: 361 KCADPCLGSCGYGAVCTVINHSPIC 385
S + N + I
Sbjct: 318 IGEFKDSLSINATNIKHFKNCTSIS 342
Score = 29.9 bits (66), Expect = 7.2
Identities = 33/189 (17%), Positives = 44/189 (23%), Gaps = 18/189 (9%)
Query: 828 NAECRDGVCVCLPDYYGDGYVS--CRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAV 885
+ C +G C + C +C S C N+C C V
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 886 CDVINHAVMC--TCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVY 943
C C TCPP +P +P G S K+ P
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQ------------MDVNPEGKYSFGATCVKKCPRN 274
Query: 944 TNPCQPSPCGPN--SQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKC 1001
C + E+ + V C C L N K
Sbjct: 275 YVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKH 334
Query: 1002 VDPCPGSCG 1010
C G
Sbjct: 335 FKNCTSISG 343
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 35.5 bits (81), Expect = 0.16
Identities = 81/709 (11%), Positives = 134/709 (18%), Gaps = 69/709 (9%)
Query: 66 PPEHPCPGSCGQNANCRVINHSPVCSCKPGFT--GEPRIRCNKIPHGVCVCLPDYYGDGY 123
GS N C G+ C + G+
Sbjct: 193 KSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTE--------------SGW 238
Query: 124 VSCRPECVLNSDCPSNKACIRNKCKNPCVPG-----TCGEGAICNVENHAVMCTCPPGTT 178
+ D P + + G C G + CT G
Sbjct: 239 RPLPSCEEKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATRGNTAKCTS-TGWI 297
Query: 179 GSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNY--FGSPPACRPECT 236
+P KP + + C ++ CT
Sbjct: 298 PAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCT 357
Query: 237 VNSDCLQSKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFT--GDALVYCNRIPP 294
+ G + V S C PG+
Sbjct: 358 QDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENG 417
Query: 295 SRPLESPPEYVNPCVPSPCGPYAQCRDINGSPSC------SCLPNYIGAPPNCRPECVQN 348
P S + + + C Y+ A
Sbjct: 418 WSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCG 477
Query: 349 SECPHDKACINEKCADPCLGSCGYGAVCTVINHSPICT--CPEGFIGDAFSSCYPKPPEP 406
+ + + C P + T + C +G+ + S+
Sbjct: 478 KDGWSAQPTCIKSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTG------ 531
Query: 407 IEPVIQEDTCNCVPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKN 466
I C + C + + K
Sbjct: 532 ---SIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKDQYKVGE-----------VLKF 577
Query: 467 PCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQC 526
C PG G G + + + +Q + +
Sbjct: 578 SCKPGFTIVGP-------NSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEE 630
Query: 527 REVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCP----GSCGQNAN 582
+ C P + P +C L V + P G ++
Sbjct: 631 YGHSEVVEYYCNPRFLMKGPNKI-QCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSP 689
Query: 583 CRVINHSPVCSCKPGFT--GEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDI 640
S +C FT G I C PQ + + C S +
Sbjct: 690 PYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKN 749
Query: 641 GGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQ 700
+ Y V + E + Q + P S +
Sbjct: 750 KKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTL 809
Query: 701 CRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQDPCP 749
G S C NY+ C C P
Sbjct: 810 NYRDGEKVSVLCQENYLIQEGEEI-TCKDGRWQSIPLCVEKIPCSQPPQ 857
Score = 34.0 bits (77), Expect = 0.44
Identities = 77/726 (10%), Positives = 156/726 (21%), Gaps = 60/726 (8%)
Query: 483 NHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNY- 541
+ G +P K Y + V C ++
Sbjct: 285 RGNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFE 344
Query: 542 -FGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFT- 599
CT + P G + V S +C PG+
Sbjct: 345 TPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYAL 404
Query: 600 --GEPRIRCNKIPPRPPPQEDVPEPVNPCYPSP----CGPYSQCRDIGGSPSCSCLPNYI 653
+ + C + P P+ + + + C Y+
Sbjct: 405 PKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYV 464
Query: 654 GSPPNCRPECVMNSECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCL 713
+ + + D+P +N + + + + C
Sbjct: 465 TADGETS-GSIRCGKDGWSAQPTCIKSCDIPVFMNARTKNDFTWFK----LNDTLDYECH 519
Query: 714 PNYIGSPPNCRPECVMNSECPSH-EACINEKCQDPCPGSCGYNAECK---VINHTPICTC 769
Y + + V S C +C+ P K + +C
Sbjct: 520 DGYESNTGSTTGSIVCGYNGWSDLPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSC 579
Query: 770 PQGF--IGDAFSGCYPKPPEPEQPVIQEDTCNCVPNAECRDGTFLAEQPVIQEDTCNCVP 827
GF +G CY P+ P+ +E +C P E +G + +
Sbjct: 580 KPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVE- 638
Query: 828 NAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNP---CVPGTCGQGA 884
C P + G + +CV + G +
Sbjct: 639 --------YYCNPRFLMKG--PNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSS 688
Query: 885 VCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYT 944
+V C T C QC ++K +
Sbjct: 689 PPYYYGDSVEFNCSESFTMIGHRSIT-----------CIHGVWTQLPQCVAIDKLKKCKS 737
Query: 945 NPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDP 1004
+ ++ + ++ G + + A + P
Sbjct: 738 SNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPP 797
Query: 1005 CPGSCGQNANCRVINHSPVC--SCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFVQCKP 1062
+ C+ + + TC G S + +
Sbjct: 798 QIPNSHNMTTTLNYRDGEKVSVLCQENYLIQE--------GEEITCKDGRWQSIPLCVEK 849
Query: 1063 IQ-NEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACR-PECTVNSDCPLNK 1120
I ++P + + + + +C + S S P +
Sbjct: 850 IPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCE 909
Query: 1121 ACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYC---NRIPPPPPPQEPI 1177
+ + G ++ C G+ D + PP
Sbjct: 910 GLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPPSCIKT 969
Query: 1178 CTCKPG 1183
Sbjct: 970 DCLSLP 975
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 35.0 bits (80), Expect = 0.20
Identities = 10/59 (16%), Positives = 14/59 (23%)
Query: 192 PVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQ 250
+ CQ C C + C C F P P T + +
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Score = 34.6 bits (79), Expect = 0.26
Identities = 12/69 (17%), Positives = 14/69 (20%)
Query: 620 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPP 679
P C C C SC C P P + + P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWP 241
Query: 680 QEDVPEPVN 688
D P
Sbjct: 242 PNDRPSTRA 250
Score = 33.4 bits (76), Expect = 0.59
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 509 PVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPEC 552
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.1 bits (75), Expect = 0.70
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 935 EVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPEC 984
++ + + CQ C C + C C F P P
Sbjct: 176 QIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 33.1 bits (75), Expect = 0.71
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 684 PEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPNYIGSPPNCRPECVMNSECPSHEACINE 742
P C C C SC C + ++ G P C +
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPGTTYIFSKGGGQITYK 239
Query: 743 KCQDPCPGS 751
+ P +
Sbjct: 240 WPPNDRPST 248
Score = 32.7 bits (74), Expect = 0.83
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 1067 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPEC 1110
+ CQ C C + C C F P P
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 225
Score = 31.1 bits (70), Expect = 3.0
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSC-LPNYIGAPPNCRPEC 345
C C C SC C + ++ G P C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 35.1 bits (80), Expect = 0.22
Identities = 52/291 (17%), Positives = 74/291 (25%), Gaps = 46/291 (15%)
Query: 821 DTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTC 880
G C+C + G C P+ K C +
Sbjct: 266 VDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSS 325
Query: 881 GQGAVCDVINHA------VMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCR 934
V V C T G QCKP + + P+ C P C
Sbjct: 326 SCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPC-TCD 384
Query: 935 EVNKQAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDK 994
+ + G + C C + G E +
Sbjct: 385 PAGSENGGICDGYTDFSVGLIAGQ--------CRCKLHVEGERCDVCKEGFYDLSAEDPY 436
Query: 995 ACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTG 1054
C + C G+ C C CK TG+ RC++ C P
Sbjct: 437 GC--KSCACNPLGTIPGGNPCDSETG--YCYCKRLVTGQ---RCDQ-------CLPQH-- 480
Query: 1055 SPFVQCKPIQNEPVYTNPCQPSPCGP----NSQCREVNKQAVCSCLPNYFG 1101
+ C+P C N+ C E + Q CSCLP+ G
Sbjct: 481 ---------WGLSNDLDGCRPCDCDLGGALNNSCSEDSGQ--CSCLPHMIG 520
Score = 33.9 bits (77), Expect = 0.41
Identities = 43/235 (18%), Positives = 56/235 (23%), Gaps = 36/235 (15%)
Query: 947 CQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCP 1006
+ +P ++ E C C N G +C L + P
Sbjct: 261 SECAPVDGVNEEVEGMVHGHCMCRHNTKGL------------NCELCMDFYHDLPWRPAE 308
Query: 1007 GSCGQNAN-CRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFVQCKPIQN 1065
G C HS C N V C T G QCKP
Sbjct: 309 GRNSNACKKCNCNEHSSSCHFDMAVFLAT---GNVSGGVCDNCQHNTMGRNCEQCKPFYF 365
Query: 1066 EPV-----YTNPCQPSPCGPN-----------SQCREVNKQAVCSCLPNYFGSPPACRPE 1109
+ N C+P C P + C C + G E
Sbjct: 366 QHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKE 425
Query: 1110 CTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYC 1164
+ C++ C GT C C CK TG C
Sbjct: 426 GFYDLSAEDPYGCKSCAC--NPLGTIPGGNPCDSETGY--CYCKRLVTGQRCDQC 476
Score = 32.0 bits (72), Expect = 1.9
Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 11/226 (4%)
Query: 552 CTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPP 611
C ++ VN++ G C N + +N C + P
Sbjct: 256 CYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLN---CELCMDFYHDLPWRPAEGRNS 312
Query: 612 RPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSP-PNCRPECVMNSECP 670
+ + E + C+ + ++ G +C N +G C+P + E
Sbjct: 313 NACKKCNCNEHSSSCHFDMAVFLATG-NVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERD 371
Query: 671 SHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMN 730
+ + P P I G C C + G + E +
Sbjct: 372 IRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQ--CRCKLHVEGERCDVCKEGFYD 429
Query: 731 SECPSHEACINEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIGD 776
C + C G+ C + T C C + G
Sbjct: 430 LSAEDPYGC--KSCACNPLGTIPGGNPC--DSETGYCYCKRLVTGQ 471
Score = 30.0 bits (67), Expect = 6.5
Identities = 41/184 (22%), Positives = 52/184 (28%), Gaps = 35/184 (19%)
Query: 48 CTCPQGYVGDAFSGCYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKI 107
+ C P G C + V + C CK GE RC+
Sbjct: 367 HPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGE---RCDV- 422
Query: 108 PHGVCVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENH 167
C +Y C C GT G C+ E
Sbjct: 423 ------CKEGFYDLS-------------AEDPYGCKSCACNP---LGTIPGGNPCDSETG 460
Query: 168 AVMCTCPPGTTGSPFIQCKP-VQNEPVYTNPCQPSPCGP----NSQCREINSQAVCSCLP 222
C C TG QC P + C+P C N+ C E + Q CSCLP
Sbjct: 461 Y--CYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQ--CSCLP 516
Query: 223 NYFG 226
+ G
Sbjct: 517 HMIG 520
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 33.9 bits (76), Expect = 0.25
Identities = 25/203 (12%), Positives = 41/203 (20%), Gaps = 28/203 (13%)
Query: 153 PGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQN--EPVYTNPCQPSPCGPNSQCR 210
T ++ C C G C+ C +
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 211 EINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRVIN 270
+ C C+ Y C + +C +S C
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGEC---------------IVEYLSEI 113
Query: 271 HSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQCRDINGSPSCSC 330
S C+C G + P C C ++ G C C
Sbjct: 114 QSAGCSCAIGXVPN---------PEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQC 164
Query: 331 LPNYIGAPPNCRPECVQNSECPH 353
+ + C+ H
Sbjct: 165 MEGFTFDXEXN--VCLGPHHHHH 185
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/187 (13%), Positives = 39/187 (20%), Gaps = 19/187 (10%)
Query: 252 CVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPS 311
T N +++ C C G + C C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXX----ETLGXACGEF 59
Query: 312 PCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGSCG 371
C C+ Y C + Q C CI E
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVE----------- 108
Query: 372 YGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAECRDGVCLC 431
S C+C G + + + +T N V C C
Sbjct: 109 ----YLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQC 164
Query: 432 LPDYYGD 438
+ + D
Sbjct: 165 MEGFTFD 171
Score = 33.5 bits (75), Expect = 0.28
Identities = 26/207 (12%), Positives = 39/207 (18%), Gaps = 29/207 (14%)
Query: 468 CTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQ--YEPVYTNPCQPSPCGPNSQ 525
T T +++ C C G C+ C +
Sbjct: 7 VTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENP 66
Query: 526 CREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRV 585
+ C C+ Y C + C S
Sbjct: 67 DPAQVNMYXCGCIEGYTLXEDTCVLDVC---------------QYXNCGESGECIVEYLS 111
Query: 586 INHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPS 645
S CSC G P C C ++ G
Sbjct: 112 EIQSAGCSCAIGXVPNP----------EDEXXCTXTGETACQLXCNTDNEVCXNVEGVYX 161
Query: 646 CSCLPNYIGSPPNCRPECVMNSECPSH 672
C C+ + C+ H
Sbjct: 162 CQCMEGFTFDXEXN--VCLGPHHHHHH 186
Score = 32.3 bits (72), Expect = 0.79
Identities = 18/190 (9%), Positives = 32/190 (16%), Gaps = 29/190 (15%)
Query: 569 CVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYP 628
+ N +++ C C G C + C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXA-----CGE 58
Query: 629 SPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSEC------------------- 669
+ C C+ Y C + C
Sbjct: 59 FGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGC 118
Query: 670 ---PSHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPE 726
+ C C ++ G C C+ +
Sbjct: 119 SCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXN--V 176
Query: 727 CVMNSECPSH 736
C+ H
Sbjct: 177 CLGPHHHHHH 186
Score = 30.4 bits (67), Expect = 2.6
Identities = 19/168 (11%), Positives = 29/168 (17%), Gaps = 9/168 (5%)
Query: 1001 CVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFVQC 1060
+ N +++ C C G C + G
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 1061 KPIQNEPVYTNPCQPSP---------CGPNSQCREVNKQAVCSCLPNYFGSPPACRPECT 1111
+ V C Q + C C
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Query: 1112 VNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGD 1159
+ C N C + C C G+T D
Sbjct: 124 XVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
Score = 30.0 bits (66), Expect = 4.4
Identities = 20/172 (11%), Positives = 37/172 (21%), Gaps = 13/172 (7%)
Query: 70 PCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCRPE 129
+ N +++ C C G C + L G+
Sbjct: 7 VTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENP 66
Query: 130 CVLNSDCPS----------NKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTG 179
+ C+ + C+ + E + C+C G
Sbjct: 67 DPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVP 126
Query: 180 SPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPAC 231
+P CQ N C + C C+ +
Sbjct: 127 NP---EDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXN 175
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 33.2 bits (76), Expect = 0.27
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 511 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDC 558
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 32.8 bits (75), Expect = 0.33
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 1069 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDC 1116
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 32.5 bits (74), Expect = 0.53
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 943 YTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDC 990
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 32.5 bits (74), Expect = 0.57
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 194 YTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDC 241
YT CQ C +C E CSC P ++G PEC D
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDD 159
Score = 29.8 bits (67), Expect = 4.3
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 304 YVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNC 341
Y C C +C + G+ +CSC P + G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 29.4 bits (66), Expect = 5.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 625 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 659
C C +C + G+ +CSC P + G P C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 29.4 bits (66), Expect = 5.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 689 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 723
C C +C + G+ +CSC P + G P C
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 32.8 bits (74), Expect = 0.77
Identities = 19/107 (17%), Positives = 24/107 (22%), Gaps = 1/107 (0%)
Query: 595 KPGFTGEPRIRCNKIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
P + PP P P P P+ P P G
Sbjct: 23 IPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPG 82
Query: 655 SPPNCRPECVMNSECPSHEASRPP-PQEDVPEPVNPCYPSPCGPYSQ 700
+ P AS PP VP + P P +
Sbjct: 83 TTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.78
Identities = 23/90 (25%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
+ C SPC C+D S C CLP + G NC C N C
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQ 100
Query: 365 PCLGSCGYGAVCTVINHSPICTCPEGFIGD 394
C G C C EG+
Sbjct: 101 YCSDHTGTKRS---------CRCHEGYSLL 121
Score = 29.6 bits (67), Expect = 3.5
Identities = 27/162 (16%), Positives = 36/162 (22%), Gaps = 39/162 (24%)
Query: 154 GTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREIN 213
C E E + + C SPC C++
Sbjct: 15 RECKEEQCSFEEAREIFKDAERTKLF---------WISYSDGDQCASSPCQNGGSCKDQL 65
Query: 214 SQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRVINHSP 273
+C CLP + G C + D N C C
Sbjct: 66 QSYICFCLPAFEG------RNCETHKDDQLICVNENGGCEQYC---------SDHTGTKR 110
Query: 274 ICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGP 315
C C G++ A P V PCG
Sbjct: 111 SCRCHEGYSLLA---DGVS------------CTPTVEYPCGK 137
Score = 28.8 bits (65), Expect = 6.5
Identities = 21/113 (18%), Positives = 28/113 (24%), Gaps = 30/113 (26%)
Query: 418 CVPNAECRDGV----CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTC 473
C C+D + C CLP + G C + D + +N C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGR-------NCETHKD-----DQLICVNENGGCEQYC 102
Query: 474 GEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQC 526
D SC C G + P PCG
Sbjct: 103 -----SDHTGTKRSCRCHEGYSLL---ADGVS------CTPTVEYPCGKIPIL 141
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 32.7 bits (73), Expect = 0.80
Identities = 32/206 (15%), Positives = 55/206 (26%), Gaps = 16/206 (7%)
Query: 333 NYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGSCGYGAVCTVINHSPICTCPEGFI 392
++ C P C + ++E + + I S +
Sbjct: 112 SWFLVKEGCFPA-SAGKGCEGNSRELSEPTVYYTGDFEEWTRITIAIPRSLASSKTRFRW 170
Query: 393 GDAFSSCYPKPPEPIEPVIQEDTC--NCVPNAECRDGVCLCLPDYYGDGYVSCRPECVQN 450
SS PP ++ V + C C + +C GVC C Y +C +
Sbjct: 171 IQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQG-TCVSNTPNH 229
Query: 451 SDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQC-------- 502
S+ + T G G G C +N S G +
Sbjct: 230 SEMFDRFEGKLSPLWYKITGGQVGTG--CGTLNDGRSLYF--NGLGKREARTVPLDTRNI 285
Query: 503 KTIQYEPVYTNPCQPSPCGPNSQCRE 528
+ +Q+ + C E
Sbjct: 286 RLVQFYIQIGSKTSGITCIKPRARNE 311
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 10/91 (10%)
Query: 1324 CKNPCVSAVQPVIQEDTC--NCVPNAECRDGVCVCLPEYYGDGYVSCRPECVLNNDCPRN 1381
KN + V + C C + +C GVC C Y N
Sbjct: 177 QKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTP--------N 228
Query: 1382 KACIKYKCKNPCVHPICSCPQGYIGDGFNGC 1412
+ + + + G +G G
Sbjct: 229 HSEMFDRFEGKLSPLWYKITGGQVGTGCGTL 259
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 30.2 bits (69), Expect = 0.84
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCR--PECVQNSECPHDKACINEKC 362
++ C + QC + +GS C C YI A C EC + C +
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGN--------- 55
Query: 363 ADPCLGSCGYGAVCTVINHSPICTCPEGFIGDAFSSC 399
C + CTC EGF +C
Sbjct: 56 -----------GTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 27.5 bits (62), Expect = 8.1
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 687 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCR--PECVMNSECPSHEACINEKC 744
++ C + QC + GS C C YI + C EC + + C + C N
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGT-CKNV-- 61
Query: 745 QDPCPGSCGYNAECKVINHTPICTCPQGFIGDAFSGC 781
G + CTC +GF C
Sbjct: 62 ----IGG--FE-----------CTCEEGFEPGPMMTC 81
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 32.4 bits (73), Expect = 0.84
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 1134 TCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPPQEPICTCKPGYTGDALSYCN 1193
C +A C+ C C YTG+ P + G + + + N
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFEN 73
Score = 32.4 bits (73), Expect = 1.0
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 5/83 (6%)
Query: 313 CGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD-----PCL 367
C +A+CRD C C+ NY G C E K I +
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 368 GSCGYGAVCTVINHSPICTCPEG 390
Y + +++ I T PE
Sbjct: 75 DLHSYVVMNHGRSYTAISTIPET 97
Score = 32.0 bits (72), Expect = 1.1
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 684 PEPVNPCY--PSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACIN 741
P C C +++CRD C C+ NY G+ C E + I
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 742 EKCQDPCPGSCGYNAECKVINHTPIC 767
+ V+ +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRS 87
Score = 31.7 bits (71), Expect = 1.8
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 1338 EDTC-----NCVPNAECRDGV----CVCLPEYYGDGYVSCRPECVLNNDCPRNKACIKYK 1388
+ TC C +AECRD C C+ Y G+G C E + K I
Sbjct: 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIFVG 63
Query: 1389 CKNPCVHPICSCPQGYIGDGFNGCY 1413
V + Y+ Y
Sbjct: 64 SSQVPVVFENTDLHSYVVMNHGRSY 88
Score = 30.5 bits (68), Expect = 3.3
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 259 TCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQ 318
C +A CR C C +TG+ C + + + S +
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIFVGSSQVPVVFE 72
Query: 319 CRDINGSP 326
D++
Sbjct: 73 NTDLHSYV 80
Score = 29.3 bits (65), Expect = 8.5
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 12/100 (12%)
Query: 820 EDTC-----NCVPNAECRDGV----CVCLPDYYGDGYV-SCRPECVLNNDCPSNKACIRN 869
+ TC C +AECRD C C+ +Y G+G N + + +
Sbjct: 5 QQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGS 64
Query: 870 KCKNPCVPGTCGQGAVC--DVINHAVMCTCPPGTTGSPFV 907
T V ++ + T P S
Sbjct: 65 SQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLP 104
Score = 29.3 bits (65), Expect = 9.7
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 576 SCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPPRPPPQED 618
C +A CR C C +TG + PQ
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTG----NGRQCVAEGSPQRV 52
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.89
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 511 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 544
YT CQP C + +C E+ + C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 31.3 bits (71), Expect = 1.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1069 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 1102
YT CQP C + +C E+ C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 30.9 bits (70), Expect = 1.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 943 YTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGS 976
YT CQP C + +C E+ C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
Score = 30.9 bits (70), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 194 YTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGS 227
YT CQP C + +C EI + C+C Y+G
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYGP 151
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.8 bits (70), Expect = 0.93
Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 32/136 (23%)
Query: 804 AECRDGTFLAEQPVIQEDTCNCVPNAECRDGV----CVCLPDYYGDGYVSCRPECVLNND 859
++ DG P+ C + C DG+ C C + G
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF------------- 47
Query: 860 CPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVYT 919
C R C G C C+C PG ++ +
Sbjct: 48 ------CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL---------GDDLLQC 92
Query: 920 NPCQPSPCGPNSQCRE 935
+P PCG + E
Sbjct: 93 HPAVKFPCGRPWKRME 108
Score = 29.3 bits (66), Expect = 3.2
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 27/109 (24%)
Query: 996 CVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRC----------------- 1038
C+ PC C + C S C C+ G+ G R
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYC 68
Query: 1039 -NRIHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCRE 1086
+ C+C PG ++ + +P PCG + E
Sbjct: 69 LEEVGWRRCSCAPGYKL---------GDDLLQCHPAVKFPCGRPWKRME 108
Score = 29.3 bits (66), Expect = 3.4
Identities = 28/150 (18%), Positives = 38/150 (25%), Gaps = 50/150 (33%)
Query: 62 CYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGD 121
C P EHPC C + C S C C+ G+ G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG----------------------- 45
Query: 122 GYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSP 181
+ C R C G C E C+C PG
Sbjct: 46 ------------------RFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL-- 85
Query: 182 FIQCKPVQNEPVYTNPCQPSPCGPNSQCRE 211
++ + +P PCG + E
Sbjct: 86 -------GDDLLQCHPAVKFPCGRPWKRME 108
Score = 29.3 bits (66), Expect = 3.4
Identities = 24/115 (20%), Positives = 33/115 (28%), Gaps = 26/115 (22%)
Query: 620 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEASRPPP 679
P+ S C + C D GS SC C + G C+ E +
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG--RFCQREVSFLN------------ 56
Query: 680 QEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECP 734
C G C + G CSC P Y + +C + P
Sbjct: 57 ----------CSLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP 99
Score = 28.1 bits (63), Expect = 8.2
Identities = 19/90 (21%), Positives = 25/90 (27%), Gaps = 17/90 (18%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
+ S C + C D GS SC C + G C+ V C D
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG--RFCQ-REVSFLNCSLDN--------- 61
Query: 365 PCLGSCGYGAVCTVINHSPICTCPEGFIGD 394
G C C+C G+
Sbjct: 62 -----GGCTHYCLEEVGWRRCSCAPGYKLG 86
Score = 28.1 bits (63), Expect = 9.3
Identities = 22/124 (17%), Positives = 32/124 (25%), Gaps = 32/124 (25%)
Query: 409 PVIQEDTCNCVPNAECRDGV----CLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKC 464
P+ C + C DG+ C C + G C R
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF-------------------CQREVS 53
Query: 465 KNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNS 524
C+ G C C+C PG + + +P PCG
Sbjct: 54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGD---------DLLQCHPAVKFPCGRPW 104
Query: 525 QCRE 528
+ E
Sbjct: 105 KRME 108
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/162 (15%), Positives = 35/162 (21%), Gaps = 23/162 (14%)
Query: 195 TNPCQPSPCGPNSQCREINSQAVCSCLPNY----FGSPPACRPECT-------VNSDCLQ 243
P + V + P R + T D Q
Sbjct: 465 PLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQ 524
Query: 244 SKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLESPPE 303
+ A N D C C + C C C + G YC+ S P +
Sbjct: 525 TWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGL---YCDEPETSLPTQLKDN 577
Query: 304 YVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPEC 345
+ G S C G + C
Sbjct: 578 FNRAPSNQN-----WLTVSGGKLSTVCGAVASGLALHFSGGC 614
Score = 31.2 bits (69), Expect = 3.0
Identities = 24/142 (16%), Positives = 31/142 (21%), Gaps = 29/142 (20%)
Query: 1041 IHAVMCTCPPGTTGSPFVQCKPI---QNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLP 1097
H ++ C P + I +T P P SQ
Sbjct: 463 WHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATR----------- 511
Query: 1098 NYFGSPPACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYT 1157
R D A N D C C + C C C +
Sbjct: 512 --------FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQWG 559
Query: 1158 GDALSYCNRIPPPPPPQEPICT 1179
G YC+ P Q
Sbjct: 560 GL---YCDEPETSLPTQLKDNF 578
Score = 30.8 bits (68), Expect = 4.7
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 8/118 (6%)
Query: 799 NCVPNAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYV-------SCR 851
+ + + + + C + C G CVC + G +
Sbjct: 515 HQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQL 574
Query: 852 PECVLNNDCPSNKACIRN-KCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQ 908
+ N + K C G ++ T T + F+Q
Sbjct: 575 KDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGCSRLLVTVDLNLTNAEFIQ 632
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/145 (13%), Positives = 33/145 (22%), Gaps = 14/145 (9%)
Query: 1274 DTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPRNKACIKYKCKNPCVSAVQ 1333
+ + LP Y R D + A + C+
Sbjct: 483 QRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLD--- 539
Query: 1334 PVIQEDTCNCVPNAECRDGVCVCLPEYYGDGYVSCRPECVLNNDCPRNKACIKY---KCK 1390
C + C G CVC ++ G N+A
Sbjct: 540 --------MCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVS 591
Query: 1391 NPCVHPICSCPQGYIGDGFNGCYPK 1415
+ +C + F+G +
Sbjct: 592 GGKLSTVCGAVASGLALHFSGGCSR 616
Score = 30.0 bits (66), Expect = 6.7
Identities = 20/116 (17%), Positives = 28/116 (24%), Gaps = 13/116 (11%)
Query: 548 CRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCN 607
R D A N D C C + C C C + G C+
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCV----QGSCVCDEQWGGL---YCD 564
Query: 608 KIPPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPEC 663
+ P Q + + + GG S C G + C
Sbjct: 565 EPETSLPTQ------LKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHFSGGC 614
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 32.5 bits (74), Expect = 1.2
Identities = 40/208 (19%), Positives = 71/208 (34%), Gaps = 15/208 (7%)
Query: 132 LNSDCPSNKACIRNKCKNPCVPGTCGEGAIC-NVENHAVMCTCPPGTTG-SPFIQCKPVQ 189
L S SN ACIR+ N + + + + +CT PG + F Q P +
Sbjct: 190 LKSCALSNLACIRDIFPNTVFADSNIDSVMAPDAFVCGRICTHHPGCLFFTFFSQEWPKE 249
Query: 190 NEPVYTNPC--QPSPCG-PNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSD-CLQSK 245
++ N C + S G P+++ ++ + + S P C ++D +
Sbjct: 250 SQR---NLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEEL 306
Query: 246 ACFNQKCVDPCPGTCGQNANCRVINHSP---ICTCKPGFTGDALVYCN---RIPPSRPLE 299
K + C C C+ ++P C G L +I R
Sbjct: 307 DIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGI 366
Query: 300 SPPEYVNPCVPSPCGPYAQCRDINGSPS 327
S + + C + R + G+ S
Sbjct: 367 SGYTLRLCKMDNECTTKIKPRIVGGTAS 394
Score = 29.8 bits (67), Expect = 8.2
Identities = 16/137 (11%), Positives = 33/137 (24%), Gaps = 15/137 (10%)
Query: 514 PCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPC 573
+ S + H C +++ + V K + C
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYH----------DTDFLGEELDIVAAKSHEAC 317
Query: 574 PGSCGQNANCRVINHSP---VCSCKPGFTGEPRIRCNKIPPRPPPQEDVPEPVN--PCYP 628
C C+ ++P C+ G + +
Sbjct: 318 QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 629 SPCGPYSQCRDIGGSPS 645
+ C + R +GG+ S
Sbjct: 378 NECTTKIKPRIVGGTAS 394
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 32.1 bits (72), Expect = 1.4
Identities = 23/140 (16%), Positives = 31/140 (22%), Gaps = 32/140 (22%)
Query: 416 CNCVPNAECRD-----GVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTP 470
C C +A C C + G C+ P + I N C P
Sbjct: 297 CKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIP 356
Query: 471 GTCGEGAICD-----------VVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSP 519
G ++ V C CP TG C+
Sbjct: 357 SISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGIL----------------CEKLR 400
Query: 520 CGPNSQCREVNHQAVCSCLP 539
C C + Q
Sbjct: 401 CEEAGSCGSDSGQGAPPHGT 420
Score = 31.0 bits (69), Expect = 3.2
Identities = 20/125 (16%), Positives = 26/125 (20%), Gaps = 27/125 (21%)
Query: 109 HGVCVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHA 168
C C + G C+ P + I N C+P G
Sbjct: 312 KLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELL 371
Query: 169 -----------VMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAV 217
V C CP TG C+ C C + Q
Sbjct: 372 HCQNGGTCHNNVRCLCPAAYTGI----------------LCEKLRCEEAGSCGSDSGQGA 415
Query: 218 CSCLP 222
Sbjct: 416 PPHGT 420
Score = 30.2 bits (67), Expect = 5.6
Identities = 17/99 (17%), Positives = 24/99 (24%), Gaps = 5/99 (5%)
Query: 999 QKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNRIHAVMCTCPPGTTGSPFV 1058
KC G + I +C P + I N + C G T V
Sbjct: 327 GKCKKNYQGRPWSPGSYLPIPKGAANACIPSISS---IGTNVCDNELLHCQNGGTCHNNV 383
Query: 1059 QCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLP 1097
+C C+ C C + Q
Sbjct: 384 RCLCPAA--YTGILCEKLRCEEAGSCGSDSGQGAPPHGT 420
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.9 bits (70), Expect = 1.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 511 YTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGS 544
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.5 bits (69), Expect = 2.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 194 YTNPCQPSPCGPNSQCREINSQAVCSCLPNYFGS 227
YT C + C + +C E + C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.1 bits (68), Expect = 2.5
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 1069 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 1102
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 30.1 bits (68), Expect = 3.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 943 YTNPCQPSPCGPNSQCREVNKQSVCSCLPNYFGS 976
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 29.0 bits (65), Expect = 7.4
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 304 YVNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNC 341
Y C + C + +C + + +C C P + G C
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
Score = 28.6 bits (64), Expect = 8.6
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 1122 CQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGD 1159
C C +C + C ++ C C PG++G
Sbjct: 117 CYTAAC---TNTSCSGHGECVETINNYTCKCDPGFSGL 151
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural
genomics,MCSG, PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa} SCOP: b.45.1.1
Length = 247
Score = 31.2 bits (69), Expect = 1.9
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 165 ENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNY 224
E AV+ T G PF P + S ++ + + +
Sbjct: 19 EYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERG 78
Query: 225 FGSPPACRPECTVNSDCLQSKACFNQKCVD 254
A T+ ++ Q +
Sbjct: 79 AEDIQA-VGRLTLLAEARQLAEEEVAAAAE 107
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 31.7 bits (72), Expect = 1.9
Identities = 48/289 (16%), Positives = 64/289 (22%), Gaps = 100/289 (34%)
Query: 151 CVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCR 210
V + + N E + ++ T C P C C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFK---TC---------QQAECPGGCRNGGFCN 162
Query: 211 EINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSKACFNQKCVDPCPGTCGQNANCRVIN 270
E +C C + G P C C C C
Sbjct: 163 ERR---ICECPDGFHG------PHCEKAL----------------CTPRCMNGGLC---V 194
Query: 271 HSPICTCKPGFTGDALVYCNRIPPSRPLESPPEYVNPCVPSPCGPYAQCRDINGSPSCSC 330
C C PGF G C+ + C C C C
Sbjct: 195 TPGFCICPPGFYGV---NCD---------------KANCSTTCFNGGTCFYPG---KCIC 233
Query: 331 LPNYIGAPPNCRPECVQNSECPHDKACINEKCADPCLGSCGYGAVCTVINHSPICTCPEG 390
P G + C KC PC G C C C +G
Sbjct: 234 PPGLEG------------------EQCEISKCPQPCRN----GGKCI---GKSKCKCSKG 268
Query: 391 FIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAECRD-GVCLCLPDYYGD 438
+ GD S C + C + C C ++G
Sbjct: 269 YQGDLCS-------------KPVCEPGCGAHGTCHEPNKCQCQEGWHGR 304
Score = 31.0 bits (70), Expect = 2.7
Identities = 29/138 (21%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 1063 IQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPACRPECTVNSDC-PLNKA 1121
++ + +P P + Q CL G +NS+ + K
Sbjct: 77 SLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKT 136
Query: 1122 CQN-----QKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGDALSYCNRIPPPPPPQ-- 1174
QN CPG C C N IC C G+ G +C + P
Sbjct: 137 PQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP---HCEKALCTPRCMNG 190
Query: 1175 -----EPICTCKPGYTGD 1187
C C PG+ G
Sbjct: 191 GLCVTPGFCICPPGFYGV 208
Score = 31.0 bits (70), Expect = 3.0
Identities = 43/252 (17%), Positives = 55/252 (21%), Gaps = 42/252 (16%)
Query: 803 NAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVLNNDCPS 862
+ D +A+ V A CL G + +
Sbjct: 74 SLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTI 133
Query: 863 NKACIR----NKCKNPCVPGTCGQGAVCDVINHAVMCTCPPGTTGSPFVQCKPIQNEPVY 918
K C+ PG C G C+ C CP G G C+
Sbjct: 134 LKTPQNAIFFKTCQQAECPGGCRNGGFCNERRI---CECPDGFHGP---HCE-------- 179
Query: 919 TNPCQPSPCGPNSQCREVNK-------QAPVYTNPCQPSPCGPNSQCREVNKQSVCSCLP 971
C C + C C K C C P
Sbjct: 180 -KALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGK---CICPP 235
Query: 972 NYFG---SPPACRPECTVNSDCPLDKACV------NQKC-VDPCPGSCGQNANCRVINHS 1021
G C C C C C C CG + C N
Sbjct: 236 GLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN-- 293
Query: 1022 PVCSCKPGFTGE 1033
C C+ G+ G
Sbjct: 294 -KCQCQEGWHGR 304
Score = 30.6 bits (69), Expect = 3.5
Identities = 38/239 (15%), Positives = 53/239 (22%), Gaps = 59/239 (24%)
Query: 62 CYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGD 121
C K ++ + + + + C +
Sbjct: 109 CLGKQDGVAAFEVDVIV--MNSEGNTILKTPQNAIFFK---TCQQ--------------- 148
Query: 122 GYVSCRPECVLNSDCPSNKACI------RNKCKNPCVPGTCGEGAICNVENHAVMCTCPP 175
C C C + C C+ C G +C C CPP
Sbjct: 149 --AECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGF---CICPP 203
Query: 176 GTTGSPFIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSCLPNYFG---SPPACR 232
G G C + C C C C P G C
Sbjct: 204 GFYGV---NC---------DKANCSTTCFNGGTCFYPGK---CICPPGLEGEQCEISKCP 248
Query: 233 PECTVNSDCLQSKAC------FNQKC-VDPCPGTCGQNANCRVINHSPICTCKPGFTGD 284
C C+ C C C CG + C N C C+ G+ G
Sbjct: 249 QPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Score = 29.8 bits (67), Expect = 6.2
Identities = 36/195 (18%), Positives = 49/195 (25%), Gaps = 35/195 (17%)
Query: 421 NAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIR----NKCKNPCTPGTCGEG 476
A CL G + + K C+ PG C G
Sbjct: 99 KASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNG 158
Query: 477 AICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCS 536
C+ C CP G G C+ C C C
Sbjct: 159 GFCNERR---ICECPDGFHGP---HCEK---------ALCTPRCMNGGLCVTPG---FCI 200
Query: 537 CLPNYFG---SPPACRPECTVNSDCPLDKACV------NQKC-VDPCPGSCGQNANCRVI 586
C P ++G C C C C+ ++C + CP C C
Sbjct: 201 CPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKC--- 257
Query: 587 NHSPVCSCKPGFTGE 601
C C G+ G+
Sbjct: 258 IGKSKCKCSKGYQGD 272
Score = 29.4 bits (66), Expect = 9.7
Identities = 53/274 (19%), Positives = 69/274 (25%), Gaps = 87/274 (31%)
Query: 946 PCQPSPCGPNSQCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKC---- 1001
P P + Q CL G +NS+ + +
Sbjct: 86 PTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEG----NTILKTPQNAI 141
Query: 1002 ------VDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNR-------------IH 1042
CPG C C N +C C GF G C + +
Sbjct: 142 FFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP---HCEKALCTPRCMNGGLCVT 195
Query: 1043 AVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 1102
C CPPG G C + C C K C C P G
Sbjct: 196 PGFCICPPGFYGV---NC---------DKANCSTTCFNGGTCFYPGK---CICPPGLEG- 239
Query: 1103 PPACRPECTVNSDCPLNKACQNQKCVDPCP--GTCGQNANCKVINHSPICTCKPGYTGDA 1160
+ C+ KC PC G C + C C GY GD
Sbjct: 240 -----------------EQCEISKCPQPCRNGGKCIGKSK---------CKCSKGYQGD- 272
Query: 1161 LSYCNRIPPPPPPQE-------PICTCKPGYTGD 1187
C++ P C C+ G+ G
Sbjct: 273 --LCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGR 304
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 31.6 bits (70), Expect = 2.1
Identities = 28/312 (8%), Positives = 58/312 (18%), Gaps = 2/312 (0%)
Query: 721 PNCRPECVMNSECPSHEACINEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIGDAFSG 780
N + + C C +C + N +C A G
Sbjct: 253 HNFNAKYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDG 312
Query: 781 CYPKPPEPEQPVIQEDTCNCVPNAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVCVCLP 840
Q V + + + + + + V +
Sbjct: 313 IGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVR 372
Query: 841 DYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCTCPPG 900
+ G + P + + SN I + + + + + G
Sbjct: 373 EITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAG 432
Query: 901 TTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNSQCRE 960
+ +T + + C
Sbjct: 433 NIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPG 492
Query: 961 VNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINH 1020
++ C +C + D C +C C C
Sbjct: 493 PDQCLSCRRFSRGRICIESCNLYDGEFREFENDSIC--VECDPQCEKMEDGLLTCHGPGP 550
Query: 1021 SPVCSCKPGFTG 1032
C G
Sbjct: 551 DNCTKCSHFKDG 562
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 31.5 bits (71), Expect = 2.2
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 395 AFSSCYPKPPEPIEPVIQEDTCNCVPNAECRDGVCLCLPDYYGD--GYVSCRPECVQNSD 452
+P + + E + C G C C P + GD C P C
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGV 435
Query: 453 CPRNKACIRNKCKNPCTPGTCGEG 476
C R C+ CK C +
Sbjct: 436 CVRPNKCL---CKKGYLGPQCEQV 456
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 28.9 bits (64), Expect = 3.6
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 16/97 (16%)
Query: 688 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQD 746
+ C + + C R + G+ CL + C P
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVP--------------APNMTCK 50
Query: 747 PCPGSCGYNAECKVINHTPI-CTCPQGFIGDAFSGCY 782
G C AECK+ + I C C + F G +
Sbjct: 51 DKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVF 87
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.0 bits (69), Expect = 3.6
Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 4/155 (2%)
Query: 446 ECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTI 505
+ K PGT E +C+ TT C +
Sbjct: 129 LILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPST 188
Query: 506 QYEPVYTNPCQPSPCGPNSQCREVNHQAVC-SCLPNYFGSPPACRPECTVNSDCPLDKAC 564
+ T + C ++ C +C Y+ C P C N+ C
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAG--VCVPACPPNTYRFEGWRC 246
Query: 565 VNQKCVDPCPGSCGQNANCRVI-NHSPVCSCKPGF 598
V++ + ++ VI + + C GF
Sbjct: 247 VDRDFCANILSAESSDSEGFVIHDGECMQECPSGF 281
Score = 31.0 bits (69), Expect = 3.7
Identities = 32/227 (14%), Positives = 56/227 (24%), Gaps = 10/227 (4%)
Query: 384 ICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAECRDGVCLCLPDYYGDGYVSC 443
+ T I DA S+ Y +P + C +Y C
Sbjct: 122 LSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRC 181
Query: 444 RPECVQN---SDCPRNKACIRNKCKNPCT-PGTCGEGAICDVVNHAVSC--TCPPGTTGS 497
+ C C N C +C C+ P C +A C CPP T
Sbjct: 182 QKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRF 241
Query: 498 PFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVNHQAVCSCLPNYFGSPPACRPECTVNSD 557
+C + + G + + + C + +
Sbjct: 242 EGWRCVDRDFCANILSAESSDSEGFVIH----DGECMQECPSGFIRNGSQSMYCIPCEGP 297
Query: 558 CPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGEPRI 604
CP + S C + + + + + G +
Sbjct: 298 CPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASEL 344
Score = 29.8 bits (66), Expect = 7.0
Identities = 29/222 (13%), Positives = 48/222 (21%), Gaps = 11/222 (4%)
Query: 973 YFGSPPACRPECTVNSDCPLDKACVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTG 1032
TV+ LD N + P CG +
Sbjct: 112 RIEKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKT--TINN 169
Query: 1033 EPRIRCNRIHAVMCTCPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAV 1092
E RC + CP + + + P CR V
Sbjct: 170 EYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGV 229
Query: 1093 C--SCLPNYFG-------SPPACRPECTVNSDCPLNKACQNQKCVDPCPGTCGQNANCKV 1143
C +C PN + C + S + +C+ CP +N + +
Sbjct: 230 CVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQSM 289
Query: 1144 INHSPICTCKPGYTGDALSYCNRIPPPPPPQEPICTCKPGYT 1185
C + + + K
Sbjct: 290 YCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLL 331
Score = 29.8 bits (66), Expect = 7.4
Identities = 31/212 (14%), Positives = 51/212 (24%), Gaps = 13/212 (6%)
Query: 73 GSCGQNANCRVINHSPVCSCKPGFTGEPRIRCNKIPHGVCVCLPDYYGDGYVSCRPECVL 132
++ S + + + +
Sbjct: 114 EKNADLCYLSTVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEE--KPMCEKTTINNEY 171
Query: 133 NSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSPFIQCKPVQNEP 192
N C + C + C + C C E C C+ P T + C+
Sbjct: 172 NYRCWTTNRC-QKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTAC--VACRHYYYAG 228
Query: 193 VYTNPCQPS-------PCGPNSQCREINSQAVCSCLPNYFGSPPACRPECTVNSDCLQSK 245
V C P+ C C I S S + C EC S+
Sbjct: 229 VCVPACPPNTYRFEGWRCVDRDFCANILSA-ESSDSEGFVIHDGECMQECPSGFIRNGSQ 287
Query: 246 ACFNQKCVDPCPGTCGQNANCRVINHSPICTC 277
+ + C PCP C + + I+
Sbjct: 288 SMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQM 319
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 30.6 bits (69), Expect = 4.0
Identities = 12/115 (10%), Positives = 20/115 (17%), Gaps = 9/115 (7%)
Query: 613 PPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSH 672
E V +C C+ + C + +
Sbjct: 13 SEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH---------RCDGVTNTVTP 63
Query: 673 EASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPEC 727
E E + + C G + P P C
Sbjct: 64 EEVINTTGEGIFDIRENANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSFC 118
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit
chimera; multifunction macromolecular complex, ubiquitin,
ATP, conformational change, thioester, switch,
adenylation, protein turnover, ligase; HET: ATP; 2.80A
{Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 30.7 bits (69), Expect = 4.3
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 1133 GTCGQNANCKVINHSPICTCKPGYTGDALSY-CNRIPPPPPPQEPICT 1179
GT G N +VI PG T C PP P+CT
Sbjct: 544 GTEGFKGNARVI--------LPGMTA---CIECTLELYPPQVNFPMCT 580
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 28.5 bits (63), Expect = 5.0
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 17/91 (18%)
Query: 1070 TNPCQPSPCGPNSQCREVNK-QAVCSCLPNYFGSPPACRPECTVNSDCPLNKACQNQKCV 1128
+ C + N+ C CL + C P + C+
Sbjct: 10 AHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---------VPASITCEEN--- 57
Query: 1129 DPCPGTCGQNANCKVIN-HSPICTCKPGYTG 1158
G C A C + + C C +
Sbjct: 58 ---NGGCAPEAECTMDDKKEVECKCTKEGSE 85
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.6 bits (68), Expect = 5.2
Identities = 42/340 (12%), Positives = 72/340 (21%), Gaps = 21/340 (6%)
Query: 658 NCRPECVMNS-ECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNY 716
+ +C+ S E + P C C D C Y
Sbjct: 126 DSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLY 185
Query: 717 IGSPPNCRPECVMNSECPSHEACINEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIGD 776
C CI+ + C ++ + + + TC
Sbjct: 186 --VFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE---NCAVATCRPDEFQC 240
Query: 777 AFSGCYPKPPEPEQPVIQEDTCNCVPNAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVC 836
+ C + C +C+D + E + C +C G C
Sbjct: 241 SDGNCIHG------------SRQCDREYDCKDMS--DEVGCVNVTLCEGPNKFKCHSGEC 286
Query: 837 VCLPDYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCT 896
+ D + CR C+ N V G C + +
Sbjct: 287 IT-LDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 345
Query: 897 CPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNS 956
V C Q K + +
Sbjct: 346 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405
Query: 957 QCREVNKQSVCSCLPNYFGSPPACRPECTVNSDCPLDKAC 996
+ +S + L + A E N D +
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ 445
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 29.2 bits (66), Expect = 5.3
Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 20/128 (15%)
Query: 1289 CVCLPDYYGDGYVSCRPECVLNNDCPRNKACIKYKCKNPCVSAVQPVIQEDTCNCVPNAE 1348
C C + D + C+ + I +C+ A + +
Sbjct: 26 CECSSESTLDP---TKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSP 82
Query: 1349 CRDG--VCVCLPEYYGDGYVSCR--PECVLNNDCPRNKACI----KYKCKNPCVHPICSC 1400
C +C Y C EC + +N C+ +K C C
Sbjct: 83 CTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFK---------CQC 133
Query: 1401 PQGYIGDG 1408
P G D
Sbjct: 134 PSGMTLDA 141
Score = 28.9 bits (65), Expect = 6.3
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPECVQNSECPHDKACINEKCAD 364
++ C SPC C++ GS C C + C++ + + I+ +C
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLD--PTKTICIETIKGTCWQTVIDGRCEI 60
Query: 365 PCLGSCGYGAVCTVINHSPICTCPEG 390
G+ C+ + + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLC 86
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 29.5 bits (65), Expect = 5.9
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 9/95 (9%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPP---NCRPECVQNSEC---PHDKACIN 359
+P V P CL G + + + P +
Sbjct: 85 DPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFK 144
Query: 360 EKCADPCLGSCGYGAVCTVINHSPICTCPEGFIGD 394
C G C G C N IC CP+GF G
Sbjct: 145 TCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
Score = 29.1 bits (64), Expect = 8.3
Identities = 19/104 (18%), Positives = 25/104 (24%), Gaps = 9/104 (8%)
Query: 1062 PIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPP---ACRPECTVNSDC-- 1116
+ + +P P Q CL G + +
Sbjct: 76 RSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILX 135
Query: 1117 -PLNKACQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGD 1159
P N CPG C C N IC C G+ G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.2 bits (67), Expect = 6.1
Identities = 42/324 (12%), Positives = 73/324 (22%), Gaps = 30/324 (9%)
Query: 658 NCRPECVMNS-ECPSHEASRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNY 716
+ +C+ S E + P C C D C Y
Sbjct: 108 DSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLY 167
Query: 717 IGSPPNCRPECVMNSECPSHEACINEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIGD 776
C CI+ + C ++ + + TC
Sbjct: 168 --VFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE---ENCAVATCRPDEFQC 222
Query: 777 AFSGCYPKPPEPEQPVIQEDTCNCVPNAECRDGTFLAEQPVIQEDTCNCVPNAECRDGVC 836
+ C + C +C+D + E + C +C G C
Sbjct: 223 SDGNCIHG------------SRQCDREYDCKDMSD--EVGCVNVTLCEGPNKFKCHSGEC 268
Query: 837 VCLPDYYGDGYVSCRPECVLNNDCPSNKACIRNKCKNPCVPGTCGQGAVCDVINHAVMCT 896
+ D + CR N C+ G VC+ + C
Sbjct: 269 IT-LDKVCNMARDCRDWSDEPIKEC---------GTNECLDNNGGCSHVCNDLKIGYECL 318
Query: 897 CPPGTTGSPFVQCKPIQNEPVYTNPCQPSPCGPNSQCREVNKQAPVYTNPCQPSPCGPNS 956
CP G +C+ I Q + + + + G +
Sbjct: 319 CPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA 378
Query: 957 QCREVNKQSVCSCLPNYFGSPPAC 980
N+ V +
Sbjct: 379 YLFFTNRHEVRKMTLDRSEYTSLI 402
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 28.2 bits (62), Expect = 7.4
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 20/101 (19%)
Query: 688 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSHEACINEKCQD 746
+ C C S C R + C CL NY C + C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVEN--------PNPTCNEN---- 52
Query: 747 PCPGSCGYNAECKVINHTP-----ICTCPQGFIGDAFSGCY 782
G C +A+C + C C + F G +
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIF 91
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 29.2 bits (65), Expect = 8.3
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 412 QEDTCNCVPNAECRDGVCLCLPDYYGDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTP- 470
D C G+C C Y G +C + S +C ++ C+
Sbjct: 92 SRDRSLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEGSCRKDNNSIICSGL 148
Query: 471 GTCGEGAICDVVNHAVSCTCPPGTTGSPFVQCKTIQYEPVYTNPCQPSPCGPNSQCREVN 530
G C G C C + + + + + CG +
Sbjct: 149 GDCVCG----------QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC 198
Query: 531 HQAVCSCLPNYFGS 544
+ C C P + GS
Sbjct: 199 GK--CRCHPGFEGS 210
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.5 bits (66), Expect = 8.6
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 840 PDYYGDGYVSCRPE--C--VLNNDCPSNKACIR---NKCKNPCVPGTCGQGAVCD 887
P + C ++C + C+ C G G G +C
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
Score = 29.5 bits (66), Expect = 8.8
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 19/76 (25%)
Query: 53 GYVGDAFSGCYPKPPEHPCP----GSCGQNANC-RVINHSPVCSCKPGFTGEPRIRCNKI 107
G + CP C ++A+C + S C C G+ G
Sbjct: 6 GVPTSPVWWNS---AQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNG------- 55
Query: 108 PHGVCVCLPDYYGDGY 123
+C D DG+
Sbjct: 56 ----ILCGRDTDLDGF 67
Score = 29.5 bits (66), Expect = 9.7
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 1358 PEYYGDGYVSCRPE--C--VLNNDCPRNKACIKYKCKNPCVHPICSCPQGYIGDGFNGC 1412
P + C ++C + C+ + + C C G+ G+G
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRS----CVCAVGWAGNGILCG 59
Score = 29.5 bits (66), Expect = 10.0
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 433 PDYYGDGYVSCRPE--C--VQNSDCPRNKACIR---NKCKNPCTPGTCGEGAICD 480
P + C S+C + C+ C G G G +C
Sbjct: 5 PGVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.504
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 22,790,329
Number of extensions: 1525246
Number of successful extensions: 12907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6562
Number of HSP's successfully gapped: 2012
Length of query: 1434
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1328
Effective length of database: 3,742,167
Effective search space: 4969597776
Effective search space used: 4969597776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.8 bits)