RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13157
(1434 letters)
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 26
Score = 32.0 bits (72), Expect = 0.019
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 127 RPECVLNSDCPSNKACIRNKCKNP 150
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 32.0 bits (72), Expect = 0.022
Identities = 17/24 (70%), Positives = 24/24 (100%)
Query: 724 RPECVMNSECPSHEACINEKCQDP 747
RPECV+NS+CPS++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.2 bits (70), Expect = 0.038
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 851 RPECVLNNDCPSNKACIRNKCKNP 874
RPECVLN+DCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.8 bits (69), Expect = 0.053
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 549 RPECTVNSDCPLDKACVNQKCVDP 572
RPEC +NSDCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.8 bits (69), Expect = 0.053
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 981 RPECTVNSDCPLDKACVNQKCVDP 1004
RPEC +NSDCP ++ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 30.5 bits (68), Expect = 0.074
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 1107 RPECTVNSDCPLNKACQNQKCVDP 1130
RPEC +NSDCP N+AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.7 bits (66), Expect = 0.12
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 1304 RPECVLNNDCPRNKACIKYKCKNP 1327
RPECVLN+DCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.7 bits (66), Expect = 0.12
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 1369 RPECVLNNDCPRNKACIKYKCKNP 1392
RPECVLN+DCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.16
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 342 RPECVQNSECPHDKACINEKCADP 365
RPECV NS+CP ++AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.17
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 444 RPECVQNSDCPRNKACIRNKCKNP 467
RPECV NSDCP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 27.8 bits (61), Expect = 0.76
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 232 RPECTVNSDCLQSKACFNQKCVDP 255
RPEC +NSDC ++AC NQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.30
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 28.1 bits (63), Expect = 0.63
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 28.1 bits (63), Expect = 0.63
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 687 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 26.2 bits (58), Expect = 3.3
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 195 TNPCQPSPCGPNSQCREINSQAVCSCLPNYFG 226
+ C+ +PC C++ + C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.8 bits (57), Expect = 4.3
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 512 TNPCQPSPCGPNSQCREVNHQAVCSCLPNYFG 543
+ C+ +PC C++ + C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.4 bits (56), Expect = 5.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 1070 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 1101
+ C+ +PC C++ C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.4 bits (56), Expect = 5.9
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 944 TNPCQPSPCGPNSQCREVNKQSVCSCLPNYFG 975
+ C+ +PC C++ C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.4 bits (56), Expect = 6.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 149 NPCVPGTCGEGAICNVENHAVMCTCPPGTTG 179
+ C C G C + ++ C CP G G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.0 bits (55), Expect = 7.3
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 466 NPCTPGTCGEGAICDVVNHAVSCTCPPGTTG 496
+ C C G C ++ C CP G G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.38
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
VN CV +PC A C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 27.7 bits (62), Expect = 0.78
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
VN C +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 27.7 bits (62), Expect = 0.78
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 687 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
VN C +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 25.0 bits (55), Expect = 7.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 196 NPCQPSPCGPNSQCREINSQAVCSCLPNYFG 226
N C +PC ++ C + + C C+P Y G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.1 bits (63), Expect = 0.61
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
Score = 27.3 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 687 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 28.2 bits (63), Expect = 0.80
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 62 CYPKPPEHPCPGSCGQNANCRVINHSPVCSCKPGFTGE 99
C P EHPC C + C S C C+ G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 26.3 bits (58), Expect = 3.1
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 1122 CQNQKCVDPCPGTCGQNANCKVINHSPICTCKPGYTGD 1159
C PC C + C S C C+ G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 25.9 bits (57), Expect = 4.4
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 564 CVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGE 601
C+ PC C + C S C C+ G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 25.9 bits (57), Expect = 4.4
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 996 CVNQKCVDPCPGSCGQNANCRVINHSPVCSCKPGFTGE 1033
C+ PC C + C S C C+ G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 25.5 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 616 QEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
Q V +PC CG + C D GS SC C + G
Sbjct: 1 QCLVLPLEHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
Score = 25.5 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 680 QEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
Q V +PC CG + C D GS SC C + G
Sbjct: 1 QCLVLPLEHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
Score = 25.2 bits (55), Expect = 8.0
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 252 CVDPCPGTCGQNANCRVINHSPICTCKPGFTGD 284
PC C + C S C C+ G+ G
Sbjct: 7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 27.0 bits (60), Expect = 1.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 26.2 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 26.2 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.6 bits (59), Expect = 1.9
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
Score = 26.2 bits (58), Expect = 3.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
Score = 26.2 bits (58), Expect = 3.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.6 bits (59), Expect = 1.9
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 305 VNPCVPSPCGPYAQCRDINGSPSCSCLPNYIGAPPNC 341
++ C + QC + +GS C C YI A C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
Score = 25.9 bits (57), Expect = 5.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 623 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 659
++ C + QC + GS C C YI + C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
Score = 25.9 bits (57), Expect = 5.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 687 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 723
++ C + QC + GS C C YI + C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium
tuberculosis, TB, gene InhA [TaxId: 1773]}
Length = 268
Score = 29.7 bits (65), Expect = 2.6
Identities = 17/189 (8%), Positives = 37/189 (19%), Gaps = 1/189 (0%)
Query: 122 GYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICNVENHAVMCTCPPGTTGSP 181
+ E + ++ R G M P
Sbjct: 54 PAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYA 113
Query: 182 FIQCKPVQNEPVYTNPCQPSPCGPNSQCREINSQAVCSC-LPNYFGSPPACRPECTVNSD 240
+ + Y + + N + S +P Y A +VN
Sbjct: 114 DVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALESVNRF 173
Query: 241 CLQSKACFNQKCVDPCPGTCGQNANCRVINHSPICTCKPGFTGDALVYCNRIPPSRPLES 300
+ + + G A ++ + + R P ++
Sbjct: 174 VAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKD 233
Query: 301 PPEYVNPCV 309
Sbjct: 234 ATPVAKTVC 242
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 29.6 bits (66), Expect = 2.9
Identities = 6/55 (10%), Positives = 13/55 (23%)
Query: 722 NCRPECVMNSECPSHEACINEKCQDPCPGSCGYNAECKVINHTPICTCPQGFIGD 776
+ A + + + + + I H P P I +
Sbjct: 89 TWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFN 143
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.3 bits (58), Expect = 3.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.5 bits (56), Expect = 4.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 195 TNPCQPSPCGPNSQCREINSQAVCSCLPNYFG 226
T C + C + +C E + C C P + G
Sbjct: 1 TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.5 bits (56), Expect = 5.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.5 bits (56), Expect = 5.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.5 bits (56), Expect = 5.8
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 512 TNPCQPSPCGPNSQCREVNHQAVCSCLPNYFG 543
T C + C + +C E + C C P + G
Sbjct: 1 TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.1 bits (55), Expect = 7.2
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 1070 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 1101
T C + C + +C E C C P + G
Sbjct: 1 TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.1 bits (55), Expect = 7.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 944 TNPCQPSPCGPNSQCREVNKQSVCSCLPNYFG 975
T C + C + +C E C C P + G
Sbjct: 1 TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 40
Score = 26.0 bits (57), Expect = 3.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 1134 TCGQNANCKVINHSPICTCKPGYTGD 1159
C +A C+ C C YTG+
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGN 33
Score = 26.0 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 312 PCGPYAQCRDINGSPSCSCLPNYIGAPPNCRPE 344
C +A+CRD C C+ NY G C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
Score = 25.6 bits (56), Expect = 4.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 259 TCGQNANCRVINHSPICTCKPGFTGD 284
C +A CR C C +TG+
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGN 33
Score = 25.2 bits (55), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 630 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPE 662
C +++CRD C C+ NY G+ C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
Score = 25.2 bits (55), Expect = 8.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 694 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPE 726
C +++CRD C C+ NY G+ C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 4.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 306 NPCVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.1 bits (55), Expect = 6.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 195 TNPCQPSPCGPNSQCREINSQAVCSCLPNYFG 226
T CQ C +C E CSC P ++G
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.1 bits (55), Expect = 7.7
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 512 TNPCQPSPCGPNSQCREVNHQAVCSCLPNYFG 543
T CQ C +C E CSC P ++G
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.1 bits (55), Expect = 7.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 624 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 654
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.1 bits (55), Expect = 7.7
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 688 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 718
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 24.8 bits (54), Expect = 9.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 1070 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 1101
T CQ C +C E CSC P ++G
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 24.8 bits (54), Expect = 9.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 944 TNPCQPSPCGPNSQCREVNKQSVCSCLPNYFG 975
T CQ C +C E CSC P ++G
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 28.4 bits (62), Expect = 7.5
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 191 EPVYTNPCQPSPCGPNSQCREINSQ-AVCSCLPNYF--GSP 228
+P++ +PC+ + + ++I S+ C P G
Sbjct: 1 DPLWQDPCE------DKRHKDIWSKEKTCDRFPKLLIIGPQ 35
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 28.1 bits (61), Expect = 9.0
Identities = 16/149 (10%), Positives = 30/149 (20%), Gaps = 3/149 (2%)
Query: 372 YGAVCTVINHSPICTCPEGFIGDAFSSCYPKPPEPIEPVIQEDTCNCVPNAECRDGVCLC 431
V + + A S Y + + +++ +C C
Sbjct: 96 MRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTIPR 155
Query: 432 LPDYY---GDGYVSCRPECVQNSDCPRNKACIRNKCKNPCTPGTCGEGAICDVVNHAVSC 488
+Y G S + C R A + +
Sbjct: 156 GIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAI 215
Query: 489 TCPPGTTGSPFVQCKTIQYEPVYTNPCQP 517
G + + N QP
Sbjct: 216 AVIIGIKDLDAFRHYDGRTIIQRDNGYQP 244
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 24.8 bits (54), Expect = 9.6
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 622 PVNPCYPSPCGPYSQCRDIG-GSPSCSCLPN 651
PVNPC PC C G C C
Sbjct: 1 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRT 31
Score = 24.8 bits (54), Expect = 9.6
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 686 PVNPCYPSPCGPYSQCRDIG-GSPSCSCLPN 715
PVNPC PC C G C C
Sbjct: 1 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRT 31
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.7 bits (54), Expect = 9.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 308 CVPSPCGPYAQCRDINGSPSCSCLPNYIG 336
+PC +C + GS C CL Y G
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTG 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.504
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,140,273
Number of extensions: 370124
Number of successful extensions: 3387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2626
Number of HSP's successfully gapped: 935
Length of query: 1434
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1337
Effective length of database: 1,075,786
Effective search space: 1438325882
Effective search space used: 1438325882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.8 bits)