BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13158
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 204 RPECLQNSECPNDKACIREKCADP 227
RPEC+ NS+CP+++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 68 PECIQNSECPYDKACIREKCVDP 90
PEC+ NS+CP ++AC+ +KC DP
Sbjct: 2 PECVLNSDCPSNQACVNQKCRDP 24
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 17/17 (100%)
Query: 49 RPECVMNSECPSHEACI 65
RPECV+NS+CPS++AC+
Sbjct: 1 RPECVLNSDCPSNQACV 17
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 25/106 (23%)
Query: 172 PSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCR---PECLQNSECPNDKACIR------- 221
+PC +C + GS C CL Y G P C EC+ N C ND C+
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECVSNP-CQNDATCLDQIGEFQC 68
Query: 222 -----------EKCADPCPGS-CGYNAQCKVINHTPTCTCPDGFIG 255
E D C S C +N +C + C CP GF G
Sbjct: 69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 25/106 (23%)
Query: 172 PSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCR---PECLQNSECPNDKACIR------- 221
+PC +C + GS C CL Y G P C EC+ N C ND C+
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECVSNP-CQNDATCLDQIGEFQC 66
Query: 222 -----------EKCADPCPGS-CGYNAQCKVINHTPTCTCPDGFIG 255
E D C S C +N +C + C CP GF G
Sbjct: 67 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 26 CRNINGGPSCSCRPGYIGSPPN--CRPECVMN 55
C N GG CSCR GYI N CR EC N
Sbjct: 138 CHNYIGGYYCSCRFGYILHTDNRTCRVECSDN 169
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 26 CRNINGGPSCSCRPGYIGSPPN--CRPECVMN 55
C N GG CSCR GYI N CR EC N
Sbjct: 138 CHNYIGGYYCSCRFGYILHTDNRTCRVECSDN 169
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 175 CGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKC---ADPCPG- 230
CG CR +GG P C C P+ G P + C +D A R++C A C G
Sbjct: 78 CGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECELRAARCRGH 130
Query: 231 ---SCGYNAQCKVINHTPTCTCPDGFIGDAFLSCH 262
S Y +C+ C P + D S H
Sbjct: 131 PDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAH 165
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 19/82 (23%)
Query: 164 QEYVNPCVPSPCGLYSQCRDIGGSPSCSCL-PNYIGAPPNCRPECLQNSECPNDKACIRE 222
+E PC+ +PC CRD C C Y+G ++C RE
Sbjct: 391 RETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG------------------RSCERE 432
Query: 223 KCADPCPGSCGYNAQCKVINHT 244
GS Q V+ HT
Sbjct: 433 ATVLSYDGSMFMKIQLPVVMHT 454
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 175 CGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKC---ADPCPG- 230
CG CR +GG P C C P+ G P + C +D A R++C A C G
Sbjct: 69 CGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECELRAARCRGH 121
Query: 231 ---SCGYNAQCKVINHTPTCTCPDGFIGDAFLSCH 262
S Y +C+ C P + D S H
Sbjct: 122 PDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAH 156
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGA 199
VN C+ +PC + C D G C C+P Y G
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGV 34
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 27.3 bits (59), Expect = 9.5, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 19/82 (23%)
Query: 164 QEYVNPCVPSPCGLYSQCRDIGGSPSCSCL-PNYIGAPPNCRPECLQNSECPNDKACIRE 222
+E PC+ +PC CRD C C Y+G ++C RE
Sbjct: 616 RETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLG------------------RSCERE 657
Query: 223 KCADPCPGSCGYNAQCKVINHT 244
GS Q V+ HT
Sbjct: 658 ATVLSYDGSMFMKIQLPVVMHT 679
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.512
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,301,499
Number of Sequences: 62578
Number of extensions: 460771
Number of successful extensions: 1098
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 238
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)