RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13158
(289 letters)
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 42.2 bits (98), Expect = 1e-04
Identities = 42/241 (17%), Positives = 58/241 (24%), Gaps = 31/241 (12%)
Query: 36 SCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSECPYDKAC-IREKCVDPCPGS 94
S +I + EC CP K + + C C CP
Sbjct: 139 SVEDNHIVLNKDDNEECG--DICPGTAKG-KTNCPATVINGQFVERCWTHSHCQKVCPTI 195
Query: 95 CGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPE 154
C C C G+C + C + + DG C
Sbjct: 196 CKSHG----CTAEGLCCHSECLGNCSQPDDPT------KCVACRNFYLDG--RCVE---T 240
Query: 155 VPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECP 214
PPP S C + Y+ C PEC
Sbjct: 241 CPPPYYHFQDWRCVNF--SFC---QDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMN 295
Query: 215 NDKACIREKCADPCPGSCGYNAQCKVINHTPT------CTCPDGFIGDAFLSCHPKPPER 268
+ C PCP C K I+ + CT +G + + E
Sbjct: 296 SSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAEL 354
Query: 269 E 269
E
Sbjct: 355 E 355
Score = 34.1 bits (77), Expect = 0.047
Identities = 29/158 (18%), Positives = 39/158 (24%), Gaps = 24/158 (15%)
Query: 14 ECYPSPCGPYS-----ECRNINGGPSC--SCRPGYIGSPPNCRPECVMNSECPSHEACIK 66
EC + P CRN C +C P Y + H C
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDL--HHKCKN 268
Query: 67 IPECIQNSECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECK 126
+ ++ CI E C G N C PCP C K
Sbjct: 269 SRRQGCHQYVIHNNKCIPE---------CPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEK 319
Query: 127 VINHNPI------CSCSQGYIGDGFSGCYPKPPEVPPP 158
I+ C+ G + G E+
Sbjct: 320 TIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEAN 357
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 41.0 bits (95), Expect = 3e-04
Identities = 22/123 (17%), Positives = 33/123 (26%), Gaps = 6/123 (4%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQN 73
EC + G C ++ G C C G+ C EC + C C+ N
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQDPDTC--SQLCV-N 55
Query: 74 SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPI 133
E Y C +DP +C + +N N +
Sbjct: 56 LEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 115
Query: 134 CSC 136
Sbjct: 116 ALD 118
Score = 33.3 bits (75), Expect = 0.074
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 7/124 (5%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNC---RPECLQNSECPNDKACIREKC 224
N C+ + G C D+ C C + EC C + C+ +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLEG 58
Query: 225 ADPCPGSCGYNAQCKVINHTPTCTCPDGFIGDAFLSCHPKPPERECLYWEIELDLVSFIF 284
C C Q ++ K Y + +L + +
Sbjct: 59 GYKC--QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVA 116
Query: 285 YIPD 288
+
Sbjct: 117 LDTE 120
Score = 31.0 bits (69), Expect = 0.44
Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 20/138 (14%)
Query: 113 DPC-PGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCV 171
+ C + G + C + C C G+ C +D+ E +P
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRC------------EDIDECQDPDT 48
Query: 172 PSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGS 231
S C ++ G C C + P C R +
Sbjct: 49 CSQ-----LCVNLEGGYKCQCEEGFQLDPHTKA--CKAVGSIAYLFFTNRHEVRKMTLDR 101
Query: 232 CGYNAQCKVINHTPTCTC 249
Y + + +
Sbjct: 102 SEYTSLIPNLRNVVALDT 119
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 39.4 bits (91), Expect = 0.001
Identities = 21/123 (17%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQN 73
C + G +C+ I G C+C GY + C +EC C + +
Sbjct: 5 NCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQGCTNSEG 62
Query: 74 SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPI 133
+ + C + P SC V+ +N N I
Sbjct: 63 A---FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAI 119
Query: 134 CSC 136
Sbjct: 120 ALD 122
Score = 34.4 bits (78), Expect = 0.034
Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 17/122 (13%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
C + G +C+ I G+ C+C Y C +EC + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYC------- 53
Query: 227 PCPGSCGYNAQCKVINHTPTCTCPDGFIGDAFLSCHPKPPERECLYWEIELDLVSFIFYI 286
+ C C C G+ L + +D+ + +
Sbjct: 54 --------SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 287 PD 288
+
Sbjct: 106 SE 107
Score = 30.9 bits (69), Expect = 0.48
Identities = 19/144 (13%), Positives = 31/144 (21%), Gaps = 17/144 (11%)
Query: 112 QDPC-PGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPC 170
++ C + G +C++I C+C GY E C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEG---------YC 53
Query: 171 VPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPG 230
C + G+ C C Y P + L I + P
Sbjct: 54 SQ-------GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRS 106
Query: 231 SCGYNAQCKVINHTPTCTCPDGFI 254
+
Sbjct: 107 EYTLLLNNLENAIALDFHHRRELV 130
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 36.9 bits (85), Expect = 0.007
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 30/153 (19%)
Query: 14 ECYPSPCGPYSECRNINGGP-SC-SCRPGYIGSPPNCRP--ECVMNSECPSHEACIKIPE 69
C +PC P ++C + G SC C G++G+ +C EC + + + +
Sbjct: 5 GCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCV 64
Query: 70 CIQNS-ECPYDKACIREKCVDPCP------GSCGYGAVCTVINHSNEKCQDPCP---GSC 119
Q C PCP G G + ++PC +C
Sbjct: 65 NTQPGFHC------------LPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNC 112
Query: 120 GYNAEC----KVINHNPICSCSQGYIGDGFSGC 148
+AEC + C C GY GDG
Sbjct: 113 HKHAECIYLGHFSDPMYKCECQTGYAGDGLICG 145
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 35.4 bits (82), Expect = 0.008
Identities = 19/120 (15%), Positives = 29/120 (24%), Gaps = 20/120 (16%)
Query: 105 NHSNEKCQDPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQ 164
N + C D G+C + + N + CS G S C
Sbjct: 35 NPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC---------------- 78
Query: 165 EYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRP----ECLQNSECPNDKACI 220
+ +PC + C + P EC + CI
Sbjct: 79 CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Score = 31.2 bits (71), Expect = 0.19
Identities = 29/188 (15%), Positives = 43/188 (22%), Gaps = 37/188 (19%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQN 73
EC C N G C C P + +P C+
Sbjct: 5 ECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG--------------CVDTRSG--- 47
Query: 74 SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPI 133
C D + C G G S K C + +
Sbjct: 48 -NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA---WGTPCEMCPAVNTSEYKIL 103
Query: 134 CSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGL-YSQCRDIGGSPSCSC 192
C +G+ + + E ++ C P +C + GS C C
Sbjct: 104 CPGGEGFRPNPITVIL---------------EDIDECQELPGLCQGGKCINTFGSFQCRC 148
Query: 193 LPNYIGAP 200
Y
Sbjct: 149 PTGYYLNE 156
Score = 28.9 bits (65), Expect = 1.3
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 19/95 (20%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
VN C+ + C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 227 PCPGSCGYNAQCKVINHTPTCTCPDGFIGDAFLSC 261
G+C + + + N C+ G C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 33.7 bits (78), Expect = 0.008
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCR--PECVMNSECPSH 61
EC + +C N +G C C GYI + C EC + + C +
Sbjct: 7 ECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNG 56
Score = 29.9 bits (68), Expect = 0.19
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSP 45
EC C+N+ GG C+C G+ P
Sbjct: 46 ECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP 77
Score = 26.0 bits (58), Expect = 5.0
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCR--PECLQNSECPNDKACIREKC 224
++ C + QC + GS C C YI A C EC + C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCG---------- 54
Query: 225 ADPCPGSCGYNAQCKVINHTPTCTCPDGFIGDAFLSC 261
N CK + CTC +GF ++C
Sbjct: 55 ----------NGTCKNVIGGFECTCEEGFEPGPMMTC 81
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.2 bits (80), Expect = 0.020
Identities = 35/244 (14%), Positives = 51/244 (20%), Gaps = 37/244 (15%)
Query: 36 SCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSECPYDKACIREKCVDPCPGSC 95
S +I + EC CP + ++ C CP C
Sbjct: 139 SVEDNHIVLNKDDNEECGDI--CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC 196
Query: 96 GYGAVCTVINHSNEKCQDPC--PGSCGYNAECKVINHNPIC--SCSQGYIGDGFSGCYPK 151
+ +C C P C+ + C +C Y C
Sbjct: 197 KSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCV-- 254
Query: 152 PPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNS 211
+ Y+ C PEC
Sbjct: 255 ----------------------NFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGY 292
Query: 212 ECPNDKACIREKCADPCPGSCGYNAQCKVI------NHTPTCTCPDGFIGDAFLSCHPKP 265
+ C PCP C K I CT +G + +
Sbjct: 293 TMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLA 351
Query: 266 PERE 269
E E
Sbjct: 352 AELE 355
Score = 27.5 bits (60), Expect = 5.9
Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 9/181 (4%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNS 74
G + E + C C + + +C+
Sbjct: 170 PATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACR 229
Query: 75 ECPYDKACIREKCVDPCP-GSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPI 133
D +CV+ CP + V + C S VI HN
Sbjct: 230 NFYLDG-----RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI-HNNK 283
Query: 134 C--SCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCS 191
C C GY + + P ++ + C I GS +
Sbjct: 284 CIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIIN 343
Query: 192 C 192
Sbjct: 344 I 344
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 35.1 bits (80), Expect = 0.020
Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 21/131 (16%)
Query: 20 CGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSECPYD 79
C ++ECR+ G C C Y G+ C E
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGK---------VKGRIFVGSS 65
Query: 80 KACIREKCVD-PCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPI---CS 135
+ + + D +G T I+ P + GY+ I +
Sbjct: 66 QVPVVFENTDLHSYVVMNHGRSYTAIST--------IPETVGYSLLPLAPIGGIIGWMFA 117
Query: 136 CSQGYIGDGFS 146
Q +GFS
Sbjct: 118 VEQDGFKNGFS 128
Score = 32.8 bits (74), Expect = 0.089
Identities = 14/73 (19%), Positives = 23/73 (31%)
Query: 175 CGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGY 234
C ++++CRD C C+ NY G C E K I +
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 235 NAQCKVINHTPTC 247
+ V+ +
Sbjct: 75 DLHSYVVMNHGRS 87
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 33.3 bits (76), Expect = 0.031
Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 16/146 (10%)
Query: 113 DPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVP 172
C C ++ C + C C+ G+ + P D+ E
Sbjct: 3 RGCARWCPQDSSC---VNATACRCNPGFSSFS------EIITTPMETCDDINECATL-SK 52
Query: 173 SPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSC 232
CG +S C + GS C C P Y + + C + C C
Sbjct: 53 VSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG------QHQC 106
Query: 233 GYNAQCKVINHTPTCTCPDGFIGDAF 258
+ C + +C C G+
Sbjct: 107 DSSTVCFNTVGSYSCRCRPGWKPRHG 132
Score = 31.7 bits (72), Expect = 0.10
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 17 PSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECV 53
C + C N G SC CRPG+ +
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
Score = 27.9 bits (62), Expect = 2.4
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 19 PCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSEC 58
CG +S+C N G C C PGY + + C
Sbjct: 54 SCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
Score = 26.7 bits (59), Expect = 5.4
Identities = 30/141 (21%), Positives = 36/141 (25%), Gaps = 28/141 (19%)
Query: 19 PCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSE--C 76
C S C N +C C PG+ E C I EC S+ C
Sbjct: 8 WCPQDSSCVN---ATACRCNPGFSSFSEIIT---------TPMETCDDINECATLSKVSC 55
Query: 77 PYDKACI------REKCVDPCPGSCGYGAVCTVINHSNEKCQD-----PCPGSCGYNAEC 125
C C PG T N S CQD C + C
Sbjct: 56 GKFSDCWNTEGSYDCVCS---PGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVC 112
Query: 126 KVINHNPICSCSQGYIGDGFS 146
+ C C G+
Sbjct: 113 FNTVGSYSCRCRPGWKPRHGI 133
Score = 26.7 bits (59), Expect = 5.7
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 15/99 (15%)
Query: 174 PCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKAC--IREKCADPCPGS 231
C S C + +C C P + + C I E CA S
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITT---------PMETCDDINE-CATLSKVS 54
Query: 232 CGYNAQCKVINHTPTCTCPDGFIGDAFLSCHPKPPEREC 270
CG + C + C C G+ + E C
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.4 bits (78), Expect = 0.040
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCR-PGYIGSPPNCRPECVMNSECPSHEACIKIPE 69
E C C ++ C C G+ G + E + + S C + +
Sbjct: 192 EGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQ 248
Score = 29.8 bits (66), Expect = 1.4
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSH 61
C +PC CR+ C C R V++ +
Sbjct: 621 PCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMF 668
Score = 29.4 bits (65), Expect = 1.5
Identities = 8/40 (20%), Positives = 8/40 (20%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 207
C C C SC C P P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 29.4 bits (65), Expect = 1.8
Identities = 11/55 (20%), Positives = 12/55 (21%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPE 69
C C C G SC C P P + K P
Sbjct: 1020 CQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 1074
Score = 29.0 bits (64), Expect = 1.9
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 161 QDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 207
+E PC+ +PC CRD C C +C E
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 29.0 bits (64), Expect = 2.4
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 70 CIQN---SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECK 126
I++ E +D P + G G+ C G C C
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGE-------GGVCLNGGVCS 205
Query: 127 VINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYV 167
V++ +C CS+ GF G + EY
Sbjct: 206 VVDDQAVCDCSRT----GFRGKDCSQGKEEYIATFKGSEYF 242
Score = 28.7 bits (63), Expect = 2.6
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 201 PNCRPECLQNSECPNDKACIREKCADPC-PGSCGYNAQCKVINHTPTCTCP 250
P E + E PN + + G C C V++ C C
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCS 216
Score = 28.7 bits (63), Expect = 2.9
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 1/61 (1%)
Query: 162 DVQEYVNPCVPSPCGLYSQCRDIGGSPSCSC-LPNYIGAPPNCRPECLQNSECPNDKACI 220
E C C + C C + G + E + ++ C
Sbjct: 185 SPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCY 244
Query: 221 R 221
Sbjct: 245 D 245
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 31.8 bits (73), Expect = 0.098
Identities = 36/139 (25%), Positives = 47/139 (33%), Gaps = 39/139 (28%)
Query: 119 CGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGLY 178
C + +C + C C QGY G + VN CV +PC
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTG------------------PRCEIDVNECVSNPCQND 56
Query: 179 SQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGS-CGYNAQ 237
+ C D G C C+P Y G +C E D C S C +N +
Sbjct: 57 ATCLDQIGEFQCICMPGYEG--VHC------------------EVNTDECASSPCLHNGR 96
Query: 238 CKVINHTPTCTCPDGFIGD 256
C + C CP GF G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 26.0 bits (58), Expect = 8.0
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
+PC +C N G C C GY G
Sbjct: 9 SLGANPCEHAGKCINTLGSFECQCLQGYTG 38
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 33.1 bits (75), Expect = 0.098
Identities = 38/253 (15%), Positives = 58/253 (22%), Gaps = 36/253 (14%)
Query: 16 YPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSE 75
Y S C RN C I P + + I+
Sbjct: 360 YDSFCSNGVTHRNQPR---GDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 76 CPYDKACIREKCVDPCPGSCGYGAVCTVIN-------HSNEKCQDPCPGSCG--YNAECK 126
C S +G + + C+ G C+
Sbjct: 417 VQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCR 476
Query: 127 VINHNPICSCSQGYIGDG---FSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRD 183
N++ ICS + + P + D CG +
Sbjct: 477 KDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTIN-CERYNGQVCGGPGRGLC 535
Query: 184 IGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINH 243
G C C P + G C +C E C +P C +C+
Sbjct: 536 FCGK--CRCHPGFEG--SAC--------QCERTT----EGCLNPRRVECSGRGRCR---- 575
Query: 244 TPTCTCPDGFIGD 256
C C G+
Sbjct: 576 CNVCECHSGYQLP 588
Score = 27.8 bits (61), Expect = 5.3
Identities = 34/211 (16%), Positives = 47/211 (22%), Gaps = 29/211 (13%)
Query: 55 NSECPSHEACIKIPECIQNSECPYDKACIREKCVDPCPGS------CGYGAVCTVINHSN 108
+S C + P + + K G V
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVL 420
Query: 109 EKCQDPCPGSCGYNAEC--KVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEY 166
+C+ C + C K IC C GYIG + QE
Sbjct: 421 PQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCEC---------QTQGRSSQEL 471
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
C + C C + + C EC C
Sbjct: 472 EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYC----ECDTI------NCER 521
Query: 227 PCPGSCGYNAQCKVINHTPTCTCPDGFIGDA 257
CG + + C C GF G A
Sbjct: 522 YNGQVCGGPGRG--LCFCGKCRCHPGFEGSA 550
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 29.0 bits (64), Expect = 0.14
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 204 RPECLQNSECPNDKACIREKCADP 227
RPEC+ NS+CP+++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 27.0 bits (59), Expect = 0.63
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 68 PECIQNSECPYDKACIREKCVDP 90
PEC+ NS+CP ++AC+ +KC DP
Sbjct: 2 PECVLNSDCPSNQACVNQKCRDP 24
Score = 24.7 bits (53), Expect = 4.1
Identities = 12/17 (70%), Positives = 17/17 (100%)
Query: 49 RPECVMNSECPSHEACI 65
RPECV+NS+CPS++AC+
Sbjct: 1 RPECVLNSDCPSNQACV 17
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 31.2 bits (71), Expect = 0.18
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 19/96 (19%)
Query: 161 QDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACI 220
+ C P+PC C+D S C C + G C ++ C
Sbjct: 42 WKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC------- 88
Query: 221 REKCADPCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
+ C+C G+
Sbjct: 89 ---NIKNG---RCKQFCKTGADSKVLCSCTTGYRLA 118
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 29.6 bits (67), Expect = 0.25
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 14 ECYPSPCG-PYSECRNINGGPSCSCRPGYIGSPPNCRP-----ECVMNSECPSHEACI 65
EC SP +C N G C C GY + EC + C
Sbjct: 5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH 62
Score = 25.3 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 14 ECYPSPCG-PYSECRNINGGPSCSCRPGYIGSP 45
EC P C N G C C PG+ SP
Sbjct: 48 ECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 30.7 bits (70), Expect = 0.26
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
+ C SPC +C+D G +C+CL + G NC R+ C+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCSL 86
Query: 227 PCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
+ C ++ C+C G+
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 26.9 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSH 61
+C SPC +C++ G +C+C G+ G NC E C
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEGK--NC--ELFTRKLCSLD 87
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 31.0 bits (69), Expect = 0.29
Identities = 21/104 (20%), Positives = 27/104 (25%), Gaps = 9/104 (8%)
Query: 159 PQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPP---NCRPECLQNSEC-- 213
D +P V P CL G + + +
Sbjct: 76 RSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILX 135
Query: 214 -PNDKACIREKCADPCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
P + + CPG C C N C CPDGF G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 31.2 bits (69), Expect = 0.29
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 7/122 (5%)
Query: 111 CQDPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPC 170
+ N + ++++ C C++G + + C + + C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXN-------ECXXETLGXAC 56
Query: 171 VPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPG 230
+ + C C+ Y C + Q C CI E ++
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSA 116
Query: 231 SC 232
C
Sbjct: 117 GC 118
Score = 30.0 bits (66), Expect = 0.56
Identities = 18/130 (13%), Positives = 27/130 (20%), Gaps = 13/130 (10%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQN 73
C + C C GY C + C C
Sbjct: 55 ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGEC--------I 106
Query: 74 SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPI 133
E + C + CT + + N C +
Sbjct: 107 VEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ-----LXCNTDNEVCXNVEGVYX 161
Query: 134 CSCSQGYIGD 143
C C +G+ D
Sbjct: 162 CQCMEGFTFD 171
Score = 30.0 bits (66), Expect = 0.66
Identities = 27/199 (13%), Positives = 47/199 (23%), Gaps = 22/199 (11%)
Query: 17 PSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSEC 76
+ ++ C C G + N E AC + +CI+N
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENP-- 66
Query: 77 PYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPICSC 136
+ + C GY + + C S E + CSC
Sbjct: 67 -----DPAQVNMYXCGCIEGY-TLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSC 120
Query: 137 SQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNY 196
+ G + + C C ++ G C C+ +
Sbjct: 121 AIGXVPNPEDEXXCTXTGE------------TACQLXCNTDNEVCXNVEGVYXCQCMEGF 168
Query: 197 IGAPPNCRPECLQNSECPN 215
CL +
Sbjct: 169 TFDXEXN--VCLGPHHHHH 185
Score = 26.9 bits (58), Expect = 6.2
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSH 61
C C N+ G C C G+ C+ H
Sbjct: 141 ACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXN--VCLGPHHHHHH 186
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 30.9 bits (70), Expect = 0.29
Identities = 22/138 (15%), Positives = 30/138 (21%), Gaps = 36/138 (26%)
Query: 119 CGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGLY 178
C +CK C+C +G+ G C
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGKNCE-----------------LFTRKLCSLDNGDCD 92
Query: 179 SQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQC 238
C + S CSC Y A + C+ P CG
Sbjct: 93 QFCHEEQNSVVCSCARGYTLA--DNGKACIPTGPYP-----------------CGKQTLE 133
Query: 239 KVINHTPTCTCPDGFIGD 256
+ T G D
Sbjct: 134 RRKRSVAQATSSSGEAPD 151
Score = 30.1 bits (68), Expect = 0.54
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 21/118 (17%)
Query: 119 CGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCVPSPCGLY 178
+ C ++ +CSC++GY D + P P PCG
Sbjct: 89 GDCDQFCHEEQNSVVCSCARGYTL------------------ADNGKACIPTGPYPCGKQ 130
Query: 179 SQCRDIGGSPSCSCLPNYIGAPPNCRP--ECLQNSECPNDKACIREKCADPCPGSCGY 234
+ R + +P + N + P G
Sbjct: 131 TLERRKRSVAQATSSSGEAPDSITWKPYDAADLD-PTENPFDLLDFNQTQPERGDNNL 187
Score = 28.2 bits (63), Expect = 2.7
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPS 60
+C SPC +C++ G +C+C G+ G NC E C
Sbjct: 44 QCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSL 86
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 31.6 bits (72), Expect = 0.29
Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 113 DPCPGS-CGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPCV 171
PC C +N C+ C+CS GY +G + C + N C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGY--EGSN-C---------------ELAKNECH 47
Query: 172 PSPCGLYSQ-CRDIGGSPSCSCLPNYIGAPPNCRPECLQNSEC 213
P C S +CSC Y + + C
Sbjct: 48 PERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 226 DPCPGS-CGYNAQCKVINHTPTCTCPDGFIGD 256
PC C +N C+ TCTC G+ G
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS 37
Score = 27.4 bits (61), Expect = 6.4
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 9 DLATLECYPSPCGPYSE-CRNINGGPSCSCRPGYIGSPPNCRPECVMNSEC 58
+LA EC+P C +CSC GY + + C
Sbjct: 40 ELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 27.0 bits (60), Expect = 6.9
Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 10/95 (10%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNC---RPECVMNSECPSHEACI-----K 66
C PC C++ G +C+C PGY GS NC + EC C+
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NCELAKNECHPERTDGCQHFCLPGQESY 65
Query: 67 IPECIQNSECPYDKACIREKCVDPCPGSCGYGAVC 101
C Q D C
Sbjct: 66 TCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 31.0 bits (68), Expect = 0.43
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 150 PKPPEVPPPPQQDVQEYVNPCVPSP 174
P PP P P + E P P+P
Sbjct: 451 PTPPVKPTAPTKPTYETEKPLKPAP 475
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 29.7 bits (67), Expect = 0.44
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 9 DLATLECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIP 68
+++ L C G C G CSC PGY + +C + P C +
Sbjct: 51 EVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP----CGRPW 104
Query: 69 ECIQNSEC 76
+ ++
Sbjct: 105 KRMEKKRS 112
Score = 28.5 bits (64), Expect = 1.1
Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 18/104 (17%)
Query: 111 CQDPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEYVNPC 170
+ PC C + C + C C G+ G C
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVS----------------FLNC 57
Query: 171 VPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECP 214
G C + G CSC P Y + +C + P
Sbjct: 58 SLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP 99
Score = 25.8 bits (57), Expect = 8.3
Identities = 16/90 (17%), Positives = 23/90 (25%), Gaps = 17/90 (18%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
+ S C + C D GS SC C + G + +
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG---------------RFCQREVSFLNCS 58
Query: 227 PCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
G C C C+C G+
Sbjct: 59 LDNGGCT--HYCLEEVGWRRCSCAPGYKLG 86
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 30.7 bits (69), Expect = 0.48
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSC-LPNYIGAPPNCRPEC 207
C C C SC C + ++ G P C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
Score = 30.4 bits (68), Expect = 0.64
Identities = 11/55 (20%), Positives = 12/55 (21%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPE 69
C C C G SC C P P + K P
Sbjct: 188 CQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP 242
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 29.2 bits (66), Expect = 0.75
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 161 QDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACI 220
+ C SPC C+D S C CLP + G NC C N+
Sbjct: 41 WISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICVNENGGC 98
Query: 221 REKCADPCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
+ C+D +C C +G+
Sbjct: 99 EQYCSD-------------HTGTKRSCRCHEGYSLL 121
Score = 26.5 bits (59), Expect = 6.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGS 44
+C SPC C++ C C P + G
Sbjct: 49 QCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 30.3 bits (69), Expect = 0.76
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 10/38 (26%)
Query: 63 ACIKIPECIQNSECPYDKACIREKCVDPCPGSCGYGAV 100
+K+ E D + C G+ Y A
Sbjct: 160 DVLKVSEKD-----DLDVLAMAM-----CSGATAYHAF 187
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 29.8 bits (66), Expect = 1.0
Identities = 38/203 (18%), Positives = 57/203 (28%), Gaps = 24/203 (11%)
Query: 47 NCRPECVMNSECPSHEACIKIPECIQNSECPYDKACIREKCVDPCPGSCGYGAVCTVINH 106
+P CP + E + + +C CP +CG A
Sbjct: 141 GNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRAC----TE 196
Query: 107 SNEKCQDPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEY 166
+NE C C GSC +++ C + Y G C P P Y
Sbjct: 197 NNECCHPECLGSCSAP------DNDTACVACRHYYYAG--VCVPACPP---------NTY 239
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
C C +I S ++ C EC ++ C
Sbjct: 240 RFEGW--RCVDRDFCANILS-AESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEG 296
Query: 227 PCPGSCGYNAQCKVINHTPTCTC 249
PCP C + K I+ +
Sbjct: 297 PCPKVCEEEKKTKTIDSVTSAQM 319
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.0 bits (65), Expect = 1.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGS 44
C + C + EC +C C PG+ G
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 27.0 bits (60), Expect = 4.8
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 166 YVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNC 203
Y C + C + +C + + +C C P + G C
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 29.7 bits (66), Expect = 1.5
Identities = 33/215 (15%), Positives = 57/215 (26%), Gaps = 30/215 (13%)
Query: 47 NCRPECVMNSECPSHEAC--IKIPECIQNSECPYDKACIREKCVDPCPGSCGYGAVCTVI 104
+ C+ N P ++C +KI + + S + C +EK G+ V
Sbjct: 369 SFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ 428
Query: 105 NHSNEKCQDPCPGSCGYNAEC--KVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQD 162
+ C + +C C G++G C E +
Sbjct: 429 VTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGS---QC-----ECSEEDYRP 480
Query: 163 VQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIRE 222
Q+ + + G C C + G + EC +
Sbjct: 481 SQQDECSPREGQPVCSQRGECLCG--QCVCHSSDFG------KITGKYCECDDF------ 526
Query: 223 KCADPCPGSCGYNAQCKVINHTPTCTCPDGFIGDA 257
C C + QC C C + G
Sbjct: 527 SCVRYKGEMCSGHGQC----SCGDCLCDSDWTGYY 557
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 28.6 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 166 YVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNC 203
Y C C +C + G+ +CSC P + G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 27.8 bits (62), Expect = 3.1
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNC 48
C C EC G +CSC PG+ G P C
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 29.3 bits (64), Expect = 1.6
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 107 SNEKCQDPCPGSCGYNAECKVINHNPICSCSQGYIGDGFSGCYPKPPEVPPPPQQDVQEY 166
+PCP C + +C + +C C GY + P + + +
Sbjct: 186 DGVYISEPCPSYCSGHGDCI----SGVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLS 241
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSC 190
+ + + C + S
Sbjct: 242 PLWYKITGGQVGTGCGTLNDGRSL 265
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.1 bits (65), Expect = 1.7
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 96 GYGAVCTVINHSNEKCQDPCPGSCGYNAEC-KVINHNPICSCSQGYIGDGFSGC 148
G N + C D P C +A+C + + C C+ G+ G+G
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCG 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.7
Identities = 24/156 (15%), Positives = 37/156 (23%), Gaps = 58/156 (37%)
Query: 152 PPEVPPPPQ-----------QDVQEYVNPCV----------PSPCGLYSQCRDIGGSPSC 190
PP P DV VN S + S ++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL------ 435
Query: 191 SCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPTCTCP 250
+ N+ A + D YN +
Sbjct: 436 -------------------KVKLENEYA-LHRSIVD------HYNIPKTFDSDDLIPPYL 469
Query: 251 DGFIGDAFLSCHPK---PPERECLYWEIELDLVSFI 283
D + + + H K PER L+ + LD F+
Sbjct: 470 DQYFY-SHIGHHLKNIEHPERMTLFRMVFLDF-RFL 503
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 29.5 bits (65), Expect = 1.8
Identities = 31/229 (13%), Positives = 51/229 (22%), Gaps = 13/229 (5%)
Query: 33 PSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSECPYDKACIREKCVDPCP 92
C C P P + + D C
Sbjct: 498 DPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCD 557
Query: 93 GSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKV--INHNPICSCSQGYIGDGFSGCYP 150
+ N + ++ C G +C + +N +
Sbjct: 558 ATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEI 617
Query: 151 KPPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQN 210
+ P P N + + LY D+ SCL +
Sbjct: 618 EADSGCPQP----VPPENGFIRNEKQLYLVGEDV----EISCLTGFETVGYQYFRCLPDG 669
Query: 211 SECPNDKACIREKCADPCPGSCGYNAQCK---VINHTPTCTCPDGFIGD 256
+ D C R +C P + I + TCP GF+
Sbjct: 670 TWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVA 718
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.9 bits (64), Expect = 2.0
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 227 PCPGSCGYNAQCKVINHTPTCTCPDGF 253
C C Q + TC CPDG
Sbjct: 279 GCQYLCLPAPQINPHSPKFTCACPDGM 305
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 27.0 bits (59), Expect = 2.7
Identities = 21/92 (22%), Positives = 27/92 (29%), Gaps = 20/92 (21%)
Query: 168 NPCVPSPCGLYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
+ CV C S C R + C CL NY C N C +
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVEN--PNPTCNEN---------- 52
Query: 227 PCPGSCGYNAQCKVINHTP-----TCTCPDGF 253
G C +A+C + TC C
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPD 82
Score = 26.7 bits (58), Expect = 4.5
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 15 CYPSPCGPYSEC-RNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQN 73
C C S C R+++ C C Y C ++ C +C +
Sbjct: 7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCN-ENNGGCDADAKCTEE 65
Query: 74 SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSN 108
K I +C P G C+ +H +
Sbjct: 66 DSGSNGKK-ITCECTKPDSYPLFDGIFCSHHHHHH 99
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 27.5 bits (61), Expect = 3.2
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNC 48
C P C + EC I +C+C GY G P C
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYG--PQC 153
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 27.0 bits (59), Expect = 3.5
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 17/87 (19%)
Query: 168 NPCVPSPCGLYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
+ C+ + + C R + G+ CL + C P + C +
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA---SITCEEN---------- 57
Query: 227 PCPGSCGYNAQCKVIN-HTPTCTCPDG 252
G C A+C + + C C
Sbjct: 58 --NGGCAPEAECTMDDKKEVECKCTKE 82
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 28.1 bits (62), Expect = 3.6
Identities = 6/67 (8%), Positives = 11/67 (16%), Gaps = 2/67 (2%)
Query: 150 PKPPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQ 209
P +Q C + C+C C
Sbjct: 252 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT--CKD 309
Query: 210 NSECPND 216
+ +
Sbjct: 310 GNSHHHH 316
Score = 26.6 bits (58), Expect = 9.9
Identities = 6/47 (12%), Positives = 9/47 (19%), Gaps = 2/47 (4%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSH 61
C + C+C G C + H
Sbjct: 272 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT--CKDGNSHHHH 316
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 27.3 bits (61), Expect = 3.8
Identities = 16/86 (18%), Positives = 19/86 (22%), Gaps = 5/86 (5%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNCR----PECVMNSECPSHEACIKIPE 69
EC SPC C+N G C C P + I I
Sbjct: 6 ECESSPCI-NGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINING 64
Query: 70 CIQNSECPYDKACIREKCVDPCPGSC 95
S+C C
Sbjct: 65 ATLKSQCCSSLGAAWGSPCTLCQVDP 90
Score = 26.9 bits (60), Expect = 5.6
Identities = 18/102 (17%), Positives = 24/102 (23%), Gaps = 8/102 (7%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCA- 225
++ C SPC C++ GS C C P C R +
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 226 ------DPCPGSCGYNAQCKVINHTPTCTCPDGFIGDAFLSC 261
C S G C G+ C
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 4.0
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 256 DAFLSCHPKPPERECLYWE----IELDLVSFIFYIPDK 289
+ F P+P E E EL + F+ Y+
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAEL-VGKFLGYVSSL 71
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 26.5 bits (58), Expect = 4.1
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 15 CYPSPCGPYSEC-RNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQN 73
C + + C R ++G C + C P M + + C EC N
Sbjct: 7 CIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCK-DKNGGCAPEAECKMN 65
Query: 74 SECPYDKACIREKCVDPCPGSCGYGAVCTVINHSN 108
DK I KC G C+ +H +
Sbjct: 66 -----DKNEIVCKCTKEGSEPLFEGVFCSHHHHHH 95
Score = 26.2 bits (57), Expect = 5.4
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 16/88 (18%)
Query: 168 NPCVPSPCGLYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 226
+ C+ + + C R + G+ CL + C P N C +
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPA--PNMTCKDK---------- 52
Query: 227 PCPGSCGYNAQCKVINHTP-TCTCPDGF 253
G C A+CK+ + C C
Sbjct: 53 --NGGCAPEAECKMNDKNEIVCKCTKEG 78
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 27.9 bits (62), Expect = 4.2
Identities = 12/124 (9%), Positives = 21/124 (16%), Gaps = 3/124 (2%)
Query: 19 PCGPYSECRNINGGPSCSCRPGYIGSPPNCRP--ECVMNSECPS-HEACIKIPECIQNSE 75
PC ++ + CR C + + E
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 76 CPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHNPICS 135
++ D G A N CG + +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Query: 136 CSQG 139
Sbjct: 155 RELL 158
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 27.2 bits (60), Expect = 4.3
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 14 ECYPSPCGPYSE---CRNINGGPSCSCRPGYIGSP--PNCRPECV 53
EC +P + C N GG CSCR GY+ C + +
Sbjct: 126 ECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQSL 170
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 27.6 bits (60), Expect = 5.2
Identities = 23/128 (17%), Positives = 30/128 (23%), Gaps = 13/128 (10%)
Query: 17 PSPCGPYSECRNINGGPSC-----SCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECI 71
S N SC SC G + + C C
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ--------CS 196
Query: 72 QNSECPYDKACIREKCVDPCPGSCGYGAVCTVINHSNEKCQDPCPGSCGYNAECKVINHN 131
C +C C G + C+D CP YN ++ N
Sbjct: 197 GRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVN 256
Query: 132 PICSCSQG 139
P S G
Sbjct: 257 PEGKYSFG 264
Score = 27.2 bits (59), Expect = 7.2
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 189 SCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYN-AQCKVINHTPTC 247
C +C + C +CA C G + C+ TC
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 248 --TCPDGFIGDAFLSCHPKPPERECLY 272
TCP + + PE + +
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSF 263
Score = 27.2 bits (59), Expect = 8.4
Identities = 26/217 (11%), Positives = 45/217 (20%), Gaps = 22/217 (10%)
Query: 34 SCSCRPGYIGSPPNCRPECVMNSECPSHEACIKIPECIQNSECPYDKACIREKCVDPCPG 93
S N C + +C + + + C C G
Sbjct: 145 SSDFLSNMSMDFQNHLGSCQKCDPSCPNGSC-------WGAGEENCQKLTKIICAQQCSG 197
Query: 94 SCGYGAVCTVINHS-NEKCQDPCPGSCGYNAECKVINHNPIC--SCSQGYIGDGFSGCYP 150
C + ++ C P C C+ C +C + + +
Sbjct: 198 RCRGKSPSDCCHNQCAAGCTGPRESDC---LVCRKFRDEATCKDTCPPLMLYNPTTYQMD 254
Query: 151 KPPEVPPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQN 210
PE + CV Y GS +C + + +C +
Sbjct: 255 VNPE-------GKYSFGATCVKKCPRNYV--VTDHGSCVRACGADSYEMEEDGVRKCKKC 305
Query: 211 SECPNDKACIREKCADPCPGSCGYNAQCKVINHTPTC 247
S N T
Sbjct: 306 EGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 27.5 bits (61), Expect = 6.0
Identities = 10/97 (10%), Positives = 16/97 (16%), Gaps = 7/97 (7%)
Query: 156 PPPPQQDVQEYVNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRP--ECLQNSEC 213
E V +C C+ + C + E
Sbjct: 12 ASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH-----RCDGVTNTVTPEEV 66
Query: 214 PNDKACIREKCADPCPGSCGYNAQCKVINHTPTCTCP 250
N + Y C + P
Sbjct: 67 INTTGEGIFDIRENANECESYLDVCCGLPEGGVLPTP 103
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 25.2 bits (54), Expect = 7.5
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 4 HLVHVDLATLECYPSPCGPYSE--CRNINGGPSCSCRPGY 41
+ V + C +PCGP + C+ N G C C GY
Sbjct: 3 NFVQLSETPAACSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>2w2n_E LDL receptor, low-density lipoprotein receptor;
hydrolase-receptor complex, PCSK9, proprotein converta
low-density lipoprotein receptor, EGF; 2.30A {Homo
sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E
3gcx_E 1hz8_A 1i0u_A 1hj7_A
Length = 107
Score = 25.8 bits (57), Expect = 8.9
Identities = 4/38 (10%), Positives = 8/38 (21%)
Query: 24 SECRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSH 61
+ EC+ N+ S+
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQGAMGTNECLDNNGGCSY 41
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric
oxide synthase regulation, acetylation, metal-binding,
zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A*
3p8e_A* 3p8p_A*
Length = 308
Score = 26.6 bits (58), Expect = 9.4
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 22 PYSECRNINGGPSCSCRP 39
SE ++G +C
Sbjct: 284 SMSELEKVDGLLTCCSVL 301
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 26.6 bits (59), Expect = 9.6
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 26 CRNINGGPSCSCRPGYIGSPPNCRPECVMNSECPSH 61
C +CSC GY +CV + +C
Sbjct: 17 CLPGQESYTCSCAQGY--RLGEDHKQCVPHDQCACG 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.142 0.513
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,745,693
Number of extensions: 302705
Number of successful extensions: 2341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 622
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)