RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13158
(289 letters)
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 30.5 bits (69), Expect = 0.017
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSPPNC 48
EC + +C N +G C C GYI + C
Sbjct: 7 ECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
Score = 25.9 bits (57), Expect = 0.88
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIGAPPNC 203
++ C + QC + GS C C YI A C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 29.4 bits (66), Expect = 0.048
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 19 PCGPYSECRNINGGPSCSCRPGYIGSPPNCRPE 51
C ++ECR+ G C C Y G+ C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
Score = 24.4 bits (53), Expect = 3.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 119 CGYNAECKVINHNPICSCSQGYIGDGFS 146
C +AEC+ C C Y G+G
Sbjct: 9 CSVHAECRDYATGFCCRCVANYTGNGRQ 36
Score = 23.6 bits (51), Expect = 5.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 232 CGYNAQCKVINHTPTCTCPDGFIGDAFLSCHPK 264
C +A+C+ C C + G+ C +
Sbjct: 9 CSVHAECRDYATGFCCRCVANYTGNGR-QCVAE 40
Score = 23.3 bits (50), Expect = 7.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 174 PCGLYSQCRDIGGSPSCSCLPNYIGAPPNCRPE 206
C ++++CRD C C+ NY G C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 26
Score = 28.9 bits (64), Expect = 0.053
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 204 RPECLQNSECPNDKACIREKCADP 227
RPEC+ NS+CP+++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 27.0 bits (59), Expect = 0.24
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 68 PECIQNSECPYDKACIREKCVDP 90
PEC+ NS+CP ++AC+ +KC DP
Sbjct: 2 PECVLNSDCPSNQACVNQKCRDP 24
Score = 24.7 bits (53), Expect = 2.0
Identities = 12/17 (70%), Positives = 17/17 (100%)
Query: 49 RPECVMNSECPSHEACI 65
RPECV+NS+CPS++AC+
Sbjct: 1 RPECVLNSDCPSNQACV 17
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.085
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
+C +PC C++ C C G+ G
Sbjct: 5 QCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 28.1 bits (63), Expect = 0.14
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.086
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
EC +PC + C + G C C PGY G
Sbjct: 3 ECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 27.7 bits (62), Expect = 0.16
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
VN CV +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.1 bits (63), Expect = 0.11
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
+C SPC C++ C C P + G
Sbjct: 4 QCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
Score = 27.0 bits (60), Expect = 0.28
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.1 bits (63), Expect = 0.13
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
+C SPC +C++ G +C+C G+ G
Sbjct: 2 QCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 26.2 bits (58), Expect = 0.57
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 27.3 bits (61), Expect = 0.22
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
EC SPC C + C C G+ G
Sbjct: 2 ECASSPCLHNGRCLDKINEFQCECPTGFTG 31
Score = 25.8 bits (57), Expect = 0.66
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 27.1 bits (60), Expect = 0.28
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 12 TLECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
T C C EC G +CSC PG+ G
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.1 bits (55), Expect = 1.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 27.0 bits (60), Expect = 0.28
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 12 TLECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
T C + C + EC +C C PG+ G
Sbjct: 1 TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.5 bits (56), Expect = 1.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 168 NPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 27.0 bits (60), Expect = 0.29
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
+PC +C N G C C GY G
Sbjct: 7 SLGANPCEHAGKCINTLGSFECQCLQGYTG 36
Score = 23.2 bits (50), Expect = 8.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 170 CVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
+PC +C + GS C CL Y G
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTG 36
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 25.9 bits (57), Expect = 0.72
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 14 ECYPSPCG-PYSECRNINGGPSCSCRPGYIGSPPNCR 49
EC SP +C N G C C GY +
Sbjct: 5 ECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMK 41
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 25.9 bits (57), Expect = 0.78
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 18 SPCGPYSECRNINGGPSCSCRPGYIGSPPNCR 49
+ C N+ G C C P +
Sbjct: 7 NGGFCSGVCHNLPGTFECICGPDSALAGQIGT 38
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.0 bits (57), Expect = 0.79
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIGSP 45
EC C N G C C P + +P
Sbjct: 5 ECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 25.9 bits (57), Expect = 0.79
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGY 41
EC + G C ++ G C C G+
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGF 31
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 28.1 bits (62), Expect = 1.0
Identities = 8/55 (14%), Positives = 13/55 (23%)
Query: 202 NCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
L A + + + + I H PT P I +
Sbjct: 89 TWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFN 143
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 25.5 bits (56), Expect = 1.4
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 167 VNPCVPSPCGLYSQCRDIGGSPSCSCLPNYIG 198
+PC C + C D GS SC C + G
Sbjct: 8 EHPCASLCC-GHGTCIDGIGSFSCDCRSGWEG 38
Score = 24.4 bits (53), Expect = 3.3
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 219 CIREKCADPCPGSCGYNAQCKVINHTPTCTCPDGFIGD 256
C+ PC C + C + +C C G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 24.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 14 ECYPSPCGPYSECRNINGGPSCSCRPGYIG 43
C CG + C + G SC CR G+ G
Sbjct: 10 PCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 24.9 bits (54), Expect = 2.5
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 15 CYPSPCGPYSECRNINGGPSCSCRPGYIGSP 45
C N GG CSCRPGY
Sbjct: 15 EEDPQPQCQHLCHNYVGGYFCSCRPGYELQE 45
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 23.9 bits (52), Expect = 4.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 19 PCGPYSECRNINGGPSCSCRPGY 41
P C N+ GG C C G+
Sbjct: 7 PDTCSQLCVNLEGGYKCQCEEGF 29
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 24.1 bits (52), Expect = 4.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 14 ECYPSPCGPYSECRNING--GPSCSCRPGYIG 43
Y C C +I +C+C GY G
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSG 39
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 23.2 bits (50), Expect = 8.2
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 14 ECYPSPCG-PYSECRNINGGPSCSCRPGYIGSP 45
EC P C N G C C PG+ SP
Sbjct: 4 ECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 36
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 23.3 bits (50), Expect = 8.7
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 14 ECYPSPCGPYSECRNINGGP--SCSCRPGYIG 43
+ C C I +C+C GYIG
Sbjct: 6 LSHDGYCLHDGVCMYIEALDKYACNCVVGYIG 37
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain
{Mastadenovirus H2 [TaxId: 10515]}
Length = 203
Score = 25.1 bits (55), Expect = 9.6
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 15/67 (22%)
Query: 101 CTVINHSNEKCQDPCPGSCG----------YNAECKVINHNPICSCSQGYIGDGFSGCYP 150
C + S + Q P +CG N ++HNP + + G
Sbjct: 103 CITLEKSTQSVQGPNSAACGLFCCMFLHAFANWPQTPMDHNPTMN-----LITGVPNSML 157
Query: 151 KPPEVPP 157
P+V P
Sbjct: 158 NSPQVQP 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.142 0.513
Gapped
Lambda K H
0.267 0.0376 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,281,492
Number of extensions: 73883
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 268
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.8 bits)