BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13159
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy
Protein
Length = 24
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 433 RPECVMNSECPSNEACINEKCGDP 456
RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 340 RPECVLNSDCPSNKACIRNKCKNP 363
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 282 RPECTVNTDCPLNKACVNQKCVDP 305
RPEC +N+DCP N+ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 177 RPECVVNSECPRNKACIKYKCKNP 200
RPECV+NS+CP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 546 RPECVQNNDCSNDKACINEKCQDP 569
RPECV N+DC +++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 75 RPECLQNSECPNDKACIREKCADP 98
RPEC+ NS+CP+++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 561 CINEKCQDPCPG--------SCGYNALCKVINHTPICTCPDGYTGDAFSGCYPK--PPEQ 610
+N + +DP + Y CK N +G+T D F+GCY + E
Sbjct: 299 IVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEM 358
Query: 611 QQLKRDRGGILVL 623
+QL GG+L+L
Sbjct: 359 KQLTDSTGGVLLL 371
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 561 CINEKCQDPCPG--------SCGYNALCKVINHTPICTCPDGYTGDAFSGCYPK--PPEQ 610
+N + +DP + Y CK N +G+T D F+GCY + E
Sbjct: 303 IVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEM 362
Query: 611 QQLKRDRGGILVL 623
+QL GG+L+L
Sbjct: 363 KQLTDSTGGVLLL 375
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKC--- 95
+ C CGP CR +GG P C C P+ G P + C +D A R++C
Sbjct: 62 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECELR 114
Query: 96 ADPCPG----SCGYNAQCKVINHTPICTCPDGFIGDAFLSCH---------PKPPEPVQP 142
A C G S Y +C+ +C P + D S H P P P Q
Sbjct: 115 AARCRGHPDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQE 174
Query: 143 IIQEDTCNCVPNAECRDGVCV 163
+ + + + R C
Sbjct: 175 LCGNNNVTYISSCHMRQATCF 195
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQ 567
C CGP CR +GG P C C P+ G P + C +D A ++C+
Sbjct: 64 CDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECE 112
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPN 431
+ C CGP CR +GG P C C P+ G P
Sbjct: 62 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPAR 96
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 49/134 (36%), Gaps = 23/134 (17%)
Query: 46 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKC---ADPCPG- 101
CGP CR +GG P C C P+ G P + C +D A R++C A C G
Sbjct: 78 CGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECELRAARCRGH 130
Query: 102 ---SCGYNAQCKVINHTPICTCPDGFIGDAFLSCH---------PKPPEPVQPIIQEDTC 149
S Y +C+ +C P + D S H P P P Q + +
Sbjct: 131 PDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQELCGNNNV 190
Query: 150 NCVPNAECRDGVCV 163
+ + R C
Sbjct: 191 TYISSCHMRQATCF 204
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 517 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQ 567
CGP CR +GG P C C P+ G P + C +D A ++C+
Sbjct: 78 CGPGKACRMLGGRPRCECAPDCSGLPARLQV-------CGSDGATYRDECE 121
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
VN C+ +PC + C D G C C+P Y G C +N+ D
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG------VHCEVNT--------------D 84
Query: 456 PCPGS-CGYNAQCKVINHTPICTCPDGFIG 484
C S C +N +C + C CP GF G
Sbjct: 85 ECASSPCLHNGRCLDKINEFQCECPTGFTG 114
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 25/106 (23%)
Query: 514 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP---ECVQNNDCSNDKACIN------- 563
+PC +C + GS C CL Y G P C ECV +N C ND C++
Sbjct: 12 ANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECV-SNPCQNDATCLDQIGEFQC 68
Query: 564 -----------EKCQDPCPGS-CGYNALCKVINHTPICTCPDGYTG 597
E D C S C +N C + C CP G+TG
Sbjct: 69 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
VN C+ +PC + C D G C C+P Y G C +N+ D
Sbjct: 43 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG------VHCEVNT--------------D 82
Query: 456 PCPGS-CGYNAQCKVINHTPICTCPDGFIG 484
C S C +N +C + C CP GF G
Sbjct: 83 ECASSPCLHNGRCLDKINEFQCECPTGFTG 112
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 25/106 (23%)
Query: 514 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR---PECVQNNDCSNDKACIN------- 563
+PC +C + GS C CL Y G P C ECV +N C ND C++
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTG--PRCEIDVNECV-SNPCQNDATCLDQIGEFQC 66
Query: 564 -----------EKCQDPCPGS-CGYNALCKVINHTPICTCPDGYTG 597
E D C S C +N C + C CP G+TG
Sbjct: 67 ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTG 112
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKC 95
+ C CGP CR +GG P C C P+ G P LQ C +D A R++C
Sbjct: 2 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPAR-----LQV--CGSDGATYRDEC 51
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQ 567
C CGP CR +GG P C C P+ G P + C +D A ++C+
Sbjct: 4 CDGVECGPGKACRMLGGRPRCECAPDCSGLP-------ARLQVCGSDGATYRDECE 52
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPN 431
+ C CGP CR +GG P C C P+ G P
Sbjct: 2 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPAR 36
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 45 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 88
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPP 608
G C + C ++ +C+C GYT D C P P
Sbjct: 89 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 124
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 45 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 88
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPPE---QQQLKRDRGGI 620
G C + C ++ +C+C GYT D C P P +Q L+R + +
Sbjct: 89 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSV 139
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 48
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPP---EQQQLKRDRGGI 620
G C + C ++ +C+C GYT D C P P +Q L+R + +
Sbjct: 49 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSV 99
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 5 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 48
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPP---EQQQLKR 615
G C + C ++ +C+C GYT D C P P +Q L+R
Sbjct: 49 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 94
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 22/108 (20%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 7 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 50
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPP---EQQQLKR 615
G C + C ++ +C+C GYT D C P P +Q L+R
Sbjct: 51 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 96
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 50 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 93
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPP 608
G C + C ++ +C+C GYT D C P P
Sbjct: 94 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 129
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 201 CVPGTCGEGAIC--DVVNHAVVCTCPPGTTG---SPLVLCRPIQNEPVYTNPCQPSPCGP 255
C P C G IC + + + C CP G T S +V + EP PC P+PC
Sbjct: 3 CDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHN 62
Query: 256 NSQCR 260
C
Sbjct: 63 GGTCE 67
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 19/98 (19%)
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C SPC +C+D G +C+CL + G NC E CS D
Sbjct: 6 CETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDN------------ 49
Query: 572 GSCGYNALCKVINHTPICTCPDGYT-GDAFSGCYPKPP 608
G C + C ++ +C+C GYT D C P P
Sbjct: 50 GDC--DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.507
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,619,097
Number of Sequences: 62578
Number of extensions: 1043714
Number of successful extensions: 2251
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 414
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)