RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13159
(660 letters)
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 46.3 bits (110), Expect = 7e-06
Identities = 36/220 (16%), Positives = 62/220 (28%), Gaps = 43/220 (19%)
Query: 360 CKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEY--VNPCIPSPCGPYSQCRDIGGSP 417
+ C+ TC +VF E +Y + C SPC +C+D G
Sbjct: 8 LERECMEETCSYEEAREVF----EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEY 63
Query: 418 SCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICT 477
+C+CL + G NC E C + + + C ++ +C+
Sbjct: 64 TCTCLEGFEG--KNC--ELFTRKLCSLD--------------NGDCDQFCHEEQNSVVCS 105
Query: 478 CPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPN 537
C G+ + P P PCG + R +
Sbjct: 106 CARGYTLA---DNG---------------KACIPTGPYPCGKQTLERRKRSVAQATSSSG 147
Query: 538 YIGAPPNCRP-ECVQNNDCSNDKACINEKCQDPCPGSCGY 576
+P + + N ++ P G
Sbjct: 148 EAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 33.6 bits (77), Expect = 0.10
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 24/112 (21%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC---RPECVQNNDCSNDKACIN-- 563
+ C SPC +C+D G +C+CL + G NC + ++ D+ C
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELFTRKLCSLDNGDCDQFCHEEQ 99
Query: 564 ----------------EKCQDPC-PGSCGYNALCKVINHTPICTCPDGYTGD 598
K P P CG L + T G D
Sbjct: 100 NSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPD 151
Score = 31.6 bits (72), Expect = 0.54
Identities = 35/234 (14%), Positives = 56/234 (23%), Gaps = 57/234 (24%)
Query: 197 CKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPN 256
+ C+ TC + V N+ + C+ SPC
Sbjct: 8 LERECMEETCSYEEARE-----VFEDSDKTNEF---------WNKYKDGDQCETSPCQNQ 53
Query: 257 SQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENREL 316
+C++ + C+CL + G NC E C L+ +Q C +
Sbjct: 54 GKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLDNGDCDQFCHEEQNS-------- 101
Query: 317 DAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICD 376
V C Y C P P CG+ +
Sbjct: 102 ------VVCSCARGYTLA---DNGKAC------------------IPTGPYPCGKQTLER 134
Query: 377 VFLLSFTAPPPPLESP----PEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYI 426
A E+P + + P D + N
Sbjct: 135 RKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNLT 188
Score = 31.3 bits (71), Expect = 0.65
Identities = 25/176 (14%), Positives = 36/176 (20%), Gaps = 42/176 (23%)
Query: 103 CGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGV- 161
C +CK CTC +GF G +C + N + C +
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEGK---NCELFTRKLCSLD------NGDCDQFCHEEQN 100
Query: 162 ---CVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHA 218
C C Y C P P CG+ +
Sbjct: 101 SVVCSCARGYTLA---DNGKAC------------------IPTGPYPCGKQTLERRKRSV 139
Query: 219 VVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNY 274
T G + P + N+ N
Sbjct: 140 AQATSSSGEAPD--------SITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
Score = 30.9 bits (70), Expect = 0.92
Identities = 24/166 (14%), Positives = 42/166 (25%), Gaps = 32/166 (19%)
Query: 32 QDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACI 91
+ + + C SPC +C+D G +C+CL + G NC E C D
Sbjct: 36 WNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNC--ELFTRKLCSLD---- 87
Query: 92 REKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNC 151
+ + C ++ +C+C G+ + I C
Sbjct: 88 ----------NGDCDQFCHEEQNSVVCSCARGYTLA---DNG-------KACIPTGPYPC 127
Query: 152 VPNAECRDGV----CVCLPDYYGDGYVSCRPECVVNSECPRNKACI 193
R D + +
Sbjct: 128 GKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLL 173
Score = 30.1 bits (68), Expect = 1.7
Identities = 10/70 (14%), Positives = 15/70 (21%), Gaps = 3/70 (4%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP--ECLQNSECPNDKACIREKC 95
P P PCG + R + +P + N +
Sbjct: 119 CIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLD-PTENPFDLLDFNQ 177
Query: 96 ADPCPGSCGY 105
P G
Sbjct: 178 TQPERGDNNL 187
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 43.5 bits (103), Expect = 4e-05
Identities = 34/208 (16%), Positives = 52/208 (25%), Gaps = 58/208 (27%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
VN C+ C + GS C C P++ +P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPS 515
G+C + + + N C+ G + C + + +
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC----------------CSLGKAWGT 87
Query: 516 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP----ECVQNNDCSNDKACINEKCQDPCP 571
PC C + P EC + CIN
Sbjct: 88 PCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINT------F 141
Query: 572 GSCGYNALCKVINHTPICTCPDGYTGDA 599
GS + C CP GY +
Sbjct: 142 GS--FQ-----------CRCPTGYYLNE 156
Score = 30.8 bits (70), Expect = 0.69
Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
VN C C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 569 PCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGC 603
G+C + + N C+ G S C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Score = 30.0 bits (68), Expect = 1.2
Identities = 25/163 (15%), Positives = 39/163 (23%), Gaps = 34/163 (20%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
VN C+ C + GS C C P++ P C D
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-------------------CVD 43
Query: 98 PCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAEC 157
G+C + + + N C+ G C + + C
Sbjct: 44 TRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCC--------CSLGKAWGTPCEMCPAV 95
Query: 158 RDGV----CVCLPDYYGDGY-VSCR--PECVVNSECPRNKACI 193
C + + V EC + CI
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCI 138
Score = 30.0 bits (68), Expect = 1.3
Identities = 15/100 (15%), Positives = 23/100 (23%), Gaps = 11/100 (11%)
Query: 204 GTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVN 263
G C N C+ G S C + +PC
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSL-------GKAWGTPCEMCPAVNTSE 99
Query: 264 KQAVCSCLPNYFGSPPNCRP----ECTVNTDCPLNKACVN 299
+ +C + +P EC C+N
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCIN 139
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 42.4 bits (99), Expect = 4e-04
Identities = 35/204 (17%), Positives = 44/204 (21%), Gaps = 22/204 (10%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSEC-PNDKACIREKCAD 97
S CR S CS L + + C + C C
Sbjct: 462 QTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCER 521
Query: 98 PCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAEC 157
CG + C C GF G A C + + C C
Sbjct: 522 YNGQVCGGPGRGLCFCGK--CRCHPGFEGSA---CQC--ERTTEGCLNPRRVECSGRGRC 574
Query: 158 RDGVCVCLPDYYGDG---YVSCRPECVVNSECPRNKACIK--------YKCKNPCVPGTC 206
R VC C Y C C C K C +
Sbjct: 575 RCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNP 634
Query: 207 GEGAICDVVNHAVVCTCPPGTTGS 230
+G C + C T
Sbjct: 635 VKGRTCKERD---SEGCWVAYTLE 655
Score = 38.9 bits (90), Expect = 0.006
Identities = 33/239 (13%), Positives = 52/239 (21%), Gaps = 29/239 (12%)
Query: 71 PPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFL 130
+C + + + I GF +
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATE-------CIQEQSFVIRALGFTDIVTV 417
Query: 131 SCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNK 190
P+ D C G+C C Y G +C + S
Sbjct: 418 QVLPQCECR-CRDQSRDRSLCHGKGFLECGICRCDTGYIGK---NCECQTQGRSSQELEG 473
Query: 191 ACIKYKCKNPC-VPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQ 249
+C K C G C G C C L+ + + + +
Sbjct: 474 SCRKDNNSIICSGLGDCVCG----------QCLCHTSDVPGKLIYGQYCECDTINCERYN 523
Query: 250 PSPCGPNSQCREVNKQAVCSCLPNYFGS-----PPNCRPECTVNTDCPLNKACVNQKCV 303
CG + + C C P + GS +C C C
Sbjct: 524 GQVCGGPGRGLCFCGK--CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCE 580
Score = 35.8 bits (82), Expect = 0.043
Identities = 40/216 (18%), Positives = 50/216 (23%), Gaps = 36/216 (16%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNE-ACINEKCGD 455
S CR S CS L + + C V C C
Sbjct: 462 QTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCER 521
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPS 515
CG + C C GF G C E E
Sbjct: 522 YNGQVCGGPGRGLCFCGK--CRCHPGFEGS---ACQ----------CERTTEGCLNPRRV 566
Query: 516 PCGPYSQCRDIGGSPSCSCLPNYIGA----PPNCRPECVQNNDCSNDKAC----INEKCQ 567
C +CR C C Y P C C + C+ + C
Sbjct: 567 ECSGRGRCRC----NVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCS 622
Query: 568 DPCPG-----SCGYNALCKVINHTPICTCPDGYTGD 598
CPG + CK + C YT +
Sbjct: 623 AACPGLQLSNNPVKGRTCKERD---SEGCWVAYTLE 655
Score = 33.5 bits (76), Expect = 0.23
Identities = 52/395 (13%), Positives = 78/395 (19%), Gaps = 79/395 (20%)
Query: 102 SCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVP-NAECRDG 160
+NA + T C +G C+ V N
Sbjct: 346 FLDHNALPDTLKVTYDSFCSNGVTH---------------RNQPRGDCDGVQINVPITFQ 390
Query: 161 VCVCLPDYYGDGYVSCRPECV-VNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAV 219
V V + + R C C +
Sbjct: 391 VKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLE----CG 446
Query: 220 VCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPP 279
+C C G G ++ C+ C C +
Sbjct: 447 ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL 506
Query: 280 NCRPEC---TVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDG- 335
C T+N + + C G C C P + G
Sbjct: 507 IYGQYCECDTINCERYNGQVCGGPGRGLCFCGKC---------------RCHPGFEGSAC 551
Query: 336 ---YVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESP 392
+ +C C N C+ C G + +C
Sbjct: 552 QCERTTEGCLNPRRVECSGRGRCRCNVCE--CHSGY--QLPLCQ---------------- 591
Query: 393 PEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC---RPECVMNSECPSNEACI 449
P PSPCG Y C + G NC P +++ C
Sbjct: 592 ---ECPGCPSPCGKYISCAE-----CLKFEKGPFG--KNCSAACPGLQLSNNPVKGRTCK 641
Query: 450 NEKCGDPCPGSCGY---NAQCKVINHTPICTCPDG 481
+I C G
Sbjct: 642 ERDSEGCWVAYTLEQQDGMDRYLIYVDESRECVAG 676
Score = 32.4 bits (73), Expect = 0.56
Identities = 24/201 (11%), Positives = 36/201 (17%), Gaps = 23/201 (11%)
Query: 399 CIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCP 458
C I + R + +C D
Sbjct: 373 QPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSR 432
Query: 459 GSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCG 518
+ + + IC C G+IG C + E C
Sbjct: 433 DRSLCHGKGFLECG--ICRCDTGYIGK---NCECQTQGRSSQELE------GSCRKDNNS 481
Query: 519 PYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNA 578
C C + + C + CG
Sbjct: 482 IICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG--- 538
Query: 579 LCKVINHTPICTCPDGYTGDA 599
C C G+ G A
Sbjct: 539 ---------KCRCHPGFEGSA 550
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 40.2 bits (94), Expect = 5e-04
Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 455 DPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYP 514
C C ++ C + C C GF + +P +D+ E
Sbjct: 3 RGCARWCPQDSSC---VNATACRCNPGFSSFSEIITTP------METCDDINECATL-SK 52
Query: 515 SPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSC 574
CG +S C + GS C C P Y + N C + ++E C C
Sbjct: 53 VSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD----VDE-CSSG-QHQC 106
Query: 575 GYNALCKVINHTPICTCPDGYTGDAFS 601
+ +C + C C G+
Sbjct: 107 DSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 35.2 bits (81), Expect = 0.021
Identities = 32/155 (20%), Positives = 45/155 (29%), Gaps = 22/155 (14%)
Query: 403 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEAC--INEKCGDPCPGS 460
C S C + +C C P + E C INE C S
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITT---------PMETCDDINE-CATLSKVS 54
Query: 461 CGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPY 520
CG + C + C C G+ E +DV E + C
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC---QDVDECSSG--QHQCDSS 109
Query: 521 SQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDC 555
+ C + GS SC C P + ++ C
Sbjct: 110 TVCFNTVGSYSCRCRPGWKPRHGIP--NNQKDTVC 142
Score = 29.4 bits (66), Expect = 1.9
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 516 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCG 575
C S C + +C C P + +D INE C SCG
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDD-------INE-CATLSKVSCG 56
Query: 576 YNALCKVINHTPICTCPDGYTGDAFSGCYPKPPE 609
+ C + C C GY + + + E
Sbjct: 57 KFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESE 90
Score = 28.6 bits (64), Expect = 3.9
Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 23/147 (15%)
Query: 45 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKAC--IREKCADPCPGS 102
C S C + +C C P + + C I E CA S
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSSFSEIIT---------TPMETCDDINE-CATLSKVS 54
Query: 103 CGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPII---QEDTCNCVPNAECRD 159
CG + C + C C G+ + E + C + C +
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 160 GV----CVCLPDYYGDGYV-SCRPECV 181
V C C P + + + + + V
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPNNQKDTV 141
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 42.2 bits (98), Expect = 6e-04
Identities = 54/437 (12%), Positives = 96/437 (21%), Gaps = 32/437 (7%)
Query: 153 PNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAIC 212
P A + Y + C+ N+ P +C C GT GE
Sbjct: 477 PCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPT---LSGTECLCVCQSGTYGENCEK 533
Query: 213 DVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLP 272
++ S C P+P +C +Q
Sbjct: 534 QSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEGEKRQEEDCTFS 593
Query: 273 NYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCP---GSCGENRELDAQRFLVSSVCLP 329
+ C + + L + + C P P G ++L V CL
Sbjct: 594 IMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLT 653
Query: 330 DYYGDGYVSCRPECVLN-SDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPP 388
+ GY R C+ + + + C R +C P V
Sbjct: 654 GFETVGYQYFR--CLPDGTWRQGDVECQRTECIKPVVQEVLTITP--------------- 696
Query: 389 LESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEAC 448
+ I C + + G +C N P + C ++ C
Sbjct: 697 -FQRLYRIGESIELTC---PKGFVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHC 752
Query: 449 INEKC--GDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVP 506
+ G C + C + Q
Sbjct: 753 QLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYF-TSPACKFLAEKCLNNQQLHFL 811
Query: 507 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNN-DCSNDKACINEK 565
+ + + + + Y + + C C
Sbjct: 812 HIGSCQDGRQLEWGLERTRLSSNSTKKESCGYDTCYDWEKCSASTSKCVCLLPPQCFKGG 871
Query: 566 CQDPCPGSCGYNALCKV 582
Q C + +
Sbjct: 872 NQLYCVKMGSSTSEKTL 888
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 40.9 bits (96), Expect = 8e-04
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC---RPECVMNSECPSNEACINEKC 453
+PCI PC C+D +C+C P Y GS NC + EC C+ +
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NCELAKNECHPERTDGCQHFCLPGQE 63
Query: 454 GDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSP 492
C + GY P C G +
Sbjct: 64 SYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 18/110 (16%)
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDP 569
+PC PC C+D +C+C P Y G+ NC +C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--------------ELAKNECHPE 49
Query: 570 CPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGG 619
C + C + C+C GY +
Sbjct: 50 RTDGCQHF--CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEK 97
Score = 37.0 bits (86), Expect = 0.015
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADP 98
+PC+ PC C+D +C+C P Y G+ NC E +N P + C
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLPG 61
Query: 99 -----CPGSCGYNAQCKVINHTPICTCPDGFI 125
C + GY P C G +
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCACGVL 93
Score = 36.2 bits (84), Expect = 0.027
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 194 KYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPC 253
+YK +PC+ C C CTC PG G N + N C P
Sbjct: 1 RYKGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEG---------SNCELAKNECHPERT 51
Query: 254 GPNSQ-CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDC 291
C + CSC Y + + C
Sbjct: 52 DGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 32.8 bits (75), Expect = 0.33
Identities = 18/112 (16%), Positives = 25/112 (22%), Gaps = 22/112 (19%)
Query: 97 DPCPGS-CGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNA 155
PC C +N C+ CTC G+ + C N
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGY--------------------EGSNCELAKN- 44
Query: 156 ECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCG 207
EC + G S C + + C T
Sbjct: 45 ECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Score = 30.8 bits (70), Expect = 1.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 246 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVD 304
+PC PC N C++ C+C P Y GS NC E N P C+
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS--NC--ELAKNECHPERTDGCQHFCLP 60
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 40.8 bits (95), Expect = 0.001
Identities = 45/245 (18%), Positives = 71/245 (28%), Gaps = 42/245 (17%)
Query: 396 VNPCIPSPCGPYSQCRDI-GGSPSC-SCLPNYIGSPPNCRP--ECVMNS----ECPSNEA 447
+ C+ +PC P +QC GS SC C ++G+ +C EC +
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPR 62
Query: 448 CINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPE 507
C+N + G C CP + G+ ++ V E
Sbjct: 63 CVNTQPGFHCL------------------PCPPRYRGNQPVGVGL----EAAKTEKQVCE 100
Query: 508 PVNPC--YPSPCGPYSQCRDIG----GSPSCSCLPNYIGAPPNCRPE------CVQNNDC 555
P NPC C +++C +G C C Y G C + N C
Sbjct: 101 PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVC 160
Query: 556 SNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKR 615
+ + K P + G K D +Q
Sbjct: 161 ATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADY 220
Query: 616 DRGGI 620
D+ +
Sbjct: 221 DKDEV 225
Score = 38.8 bits (90), Expect = 0.006
Identities = 44/196 (22%), Positives = 64/196 (32%), Gaps = 39/196 (19%)
Query: 38 VNPCVPSPCGPYSQCRDI-GGSPSC-SCLPNYIGAPPNCRP--ECLQNSECPNDKACIRE 93
+ C+ +PC P +QC GS SC C ++G +C EC
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVP----------- 51
Query: 94 KCADPCPGSCGYNAQCKVINHTPIC-TCPDGFIGDAFLSCHPKPPEPV-QPIIQEDTC-- 149
D C S +C C CP + G+ + + + Q E+ C
Sbjct: 52 ---DIC-FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 150 ---NCVPNAECR--------DGVCVCLPDYYGDGYVSCRPECV-----VNSECPRNKACI 193
NC +AEC C C Y GDG + + +N C N
Sbjct: 108 KTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYH 167
Query: 194 KYKCKNPCVPGTCGEG 209
K P +P + E
Sbjct: 168 CIKDNCPHLPNSGQED 183
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 40.3 bits (93), Expect = 0.002
Identities = 33/229 (14%), Positives = 51/229 (22%), Gaps = 38/229 (16%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPEC---VMNSECPSNEACINEKC 453
C G + + + +C+ C + C + C + +C
Sbjct: 153 EECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSEC 212
Query: 454 GDPCPGSCGYNA--QCKVINHTPIC--TCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPV 509
C C+ C TCP + C
Sbjct: 213 LGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF---------------- 256
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDP 569
S C + Y+ C PEC ++ C P
Sbjct: 257 -----SFC---QDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGP 307
Query: 570 CPGSCGYNALCKVINHTPI------CTCPDGYTGDAFSGCYPKPPEQQQ 612
CP C K I+ CT +G G E +
Sbjct: 308 CPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEA 356
Score = 37.2 bits (85), Expect = 0.018
Identities = 37/184 (20%), Positives = 55/184 (29%), Gaps = 10/184 (5%)
Query: 299 NQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRN 358
N++C D CPG+ A V + C C + C + C +
Sbjct: 152 NEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK-SHGCTAEGLCCHS 210
Query: 359 KCKNPCV-PGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGG-- 415
+C C P + C F L +E+ P C +S C+D+
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRC----VETCPPPYYHFQDWRCVNFSFCQDLHHKC 266
Query: 416 -SPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTP 474
+ Y+ C PEC S+ C PCP C K I+
Sbjct: 267 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPCPKVCHLLEGEKTIDSVT 325
Query: 475 ICTC 478
Sbjct: 326 SAQE 329
Score = 36.0 bits (82), Expect = 0.046
Identities = 27/170 (15%), Positives = 38/170 (22%), Gaps = 28/170 (16%)
Query: 151 CVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGA 210
C V + C+ C + C + + C + G C +
Sbjct: 163 AKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGCTAEGLCCHSECLGNCSQPD 220
Query: 211 I------CDVVNHAVVC--TCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREV 262
C C TCPP + +
Sbjct: 221 DPTKCVACRNFYLDGRCVETCPPPY---------------YHFQDWRCVNFSFCQDLHHK 265
Query: 263 NKQAVCSCLPNYFGSPPNCRPECTVNTDCPL-NKACVNQKCVDPCPGSCG 311
K + Y C PEC N C C+ PCP C
Sbjct: 266 CKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC--TPCLGPCPKVCH 313
Score = 33.0 bits (74), Expect = 0.35
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 10/110 (9%)
Query: 43 PSPCGPYSQCRDIGG---SPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPC 99
C +S C+D+ + Y+ C PEC + C PC
Sbjct: 250 DWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC-TPCLGPC 308
Query: 100 PGSCGYNAQCKVINHTPI------CTCPDGFIGDAFLSCHPKPPEPVQPI 143
P C K I+ CT +G + + E +
Sbjct: 309 PKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANL 358
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 39.8 bits (92), Expect = 0.002
Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 5/153 (3%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC---RPECVMNSECPSNEACINEKC 453
N C+ + G C D+ C C + EC C + C+N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEG 58
Query: 454 GDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCY 513
G C G+ + + F + + V
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 514 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR 546
D+ CS + +
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 151
Score = 35.6 bits (81), Expect = 0.044
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 5/106 (4%)
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC---RPECVQNNDCSNDKACINEKC 566
N C + G C D+ C C + EC + CS + C+N +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCS--QLCVNLEG 58
Query: 567 QDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQ 612
C G+ + + + + +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 104
Score = 34.8 bits (79), Expect = 0.082
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 18/136 (13%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADP 98
N C+ + G C D+ C C + C EC +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQD------------ 45
Query: 99 CPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECR 158
P +C C + C C +GF D +
Sbjct: 46 -PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 159 DGVCVCLPDYYGDGYV 174
+ +
Sbjct: 103 EYTSLIPNLRNVVALD 118
Score = 31.0 bits (69), Expect = 1.2
Identities = 16/134 (11%), Positives = 31/134 (23%), Gaps = 8/134 (5%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQ 258
N C+ G +C+ + C CP G C + CQ P +
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-------IDECQD-PDTCSQL 52
Query: 259 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDA 318
C + C C + P + + + +
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLR 112
Query: 319 QRFLVSSVCLPDYY 332
+ + +
Sbjct: 113 NVVALDTEVASNRI 126
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 39.8 bits (92), Expect = 0.003
Identities = 22/143 (15%), Positives = 35/143 (24%), Gaps = 18/143 (12%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
C + G +C+ I G+ C+C Y + C +EC C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQ----- 55
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPS 515
C C C G+ P S K P P + P
Sbjct: 56 ----------GCTNSEGAFQCWCEAGYELRPDR-RSCKALGPEPVLLFANRIDIRQVLPH 104
Query: 516 PCGPYSQCRDIGGSPSCSCLPNY 538
++ + +
Sbjct: 105 RSEYTLLLNNLENAIALDFHHRR 127
Score = 38.2 bits (88), Expect = 0.006
Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 18/154 (11%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
C + G +C+ I G+ C+C Y C +EC + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYC------- 53
Query: 98 PCPGSCGYNAQCKVINHTPICTCPDGFIGDA-FLSCHPKPPEPVQPIIQEDTCNCVPNAE 156
+ C C C G+ SC PEPV V
Sbjct: 54 --------SQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 157 CRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNK 190
+ + + R E V S+ ++
Sbjct: 106 SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDR 139
Score = 35.5 bits (81), Expect = 0.056
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 17/90 (18%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
C + G +C+ I G+ C+C Y C N+C+ + C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTE--DGRTCQDVNECAEEGYCSQ----- 55
Query: 569 PCPGSCGYNALCKVINHTPICTCPDGYTGD 598
C C C GY
Sbjct: 56 ----------GCTNSEGAFQCWCEAGYELR 75
Score = 34.7 bits (79), Expect = 0.096
Identities = 19/137 (13%), Positives = 31/137 (22%), Gaps = 8/137 (5%)
Query: 245 TNPCQPSPCGPNSQCREVNKQAVCSCLPNY----FGSPPNCRPECTVNTDCPLNKACVNQ 300
C + G +C+ + C+C Y G EC C C N
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG--CTNS 60
Query: 301 KCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKC 360
+ C C EL R ++ + + + +
Sbjct: 61 EGAFQC--WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA 118
Query: 361 KNPCVPGTCGEGAICDV 377
DV
Sbjct: 119 IALDFHHRRELVFWSDV 135
Score = 31.3 bits (70), Expect = 0.92
Identities = 23/168 (13%), Positives = 39/168 (23%), Gaps = 7/168 (4%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQ 258
C G C ++ AV CTC G + NE C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ-------G 56
Query: 259 CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDA 318
C C C Y P + L ++ + V P
Sbjct: 57 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 116
Query: 319 QRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVP 366
+ + V+ N + + + + ++P
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 164
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 39.4 bits (92), Expect = 0.003
Identities = 16/137 (11%), Positives = 25/137 (18%), Gaps = 26/137 (18%)
Query: 382 FTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSE 441
F + E V +C C+ +
Sbjct: 9 FGNASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH---------------R 53
Query: 442 CPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPP 501
C + + G ++ +C P P
Sbjct: 54 CDGVTNTVTPEEVINTTGEGIFD-----------IRENANECESYLDVCCGLPEGGVLPT 102
Query: 502 QEDVPEPVNPCYPSPCG 518
P V PS CG
Sbjct: 103 PSPTPPVVPVLKPSFCG 119
Score = 29.8 bits (67), Expect = 2.8
Identities = 11/138 (7%), Positives = 20/138 (14%), Gaps = 29/138 (21%)
Query: 25 NAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSEC 84
E V +C C+ + C
Sbjct: 10 GNASEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH---------------RC 54
Query: 85 PNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPII 144
+ + G ++ C P V P
Sbjct: 55 DGVTNTVTPEEVINTTGEGIFD-----------IRENANECESYLDVCCGLPEGGVLP-- 101
Query: 145 QEDTCNCVPNAECRDGVC 162
+ + C
Sbjct: 102 -TPSPTPPVVPVLKPSFC 118
Score = 28.6 bits (64), Expect = 6.4
Identities = 10/96 (10%), Positives = 19/96 (19%), Gaps = 7/96 (7%)
Query: 499 PPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRP--ECVQNNDCS 556
E V +C C+ + C V +
Sbjct: 13 SEYIPPGYEIVTKAPLGALTALPRCGTGADQGKKVCIVYH-----RCDGVTNTVTPEEVI 67
Query: 557 NDKACINEKCQDPCPGSCGYNALCKVINHTPICTCP 592
N ++ Y +C + + P
Sbjct: 68 NTTGEGIFDIRENANECESYLDVCCGLPEGGVLPTP 103
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 36.4 bits (85), Expect = 0.007
Identities = 33/142 (23%), Positives = 43/142 (30%), Gaps = 37/142 (26%)
Query: 399 CIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCP 458
+PC +C + GS C CL Y G P C E +NE +PC
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG--PRC-------------EIDVNECVSNPC- 53
Query: 459 GSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCG 518
+A C C C G+ G C + C SPC
Sbjct: 54 ---QNDATCLDQIGEFQCICMPGYEG---VHCE---------------VNTDECASSPCL 92
Query: 519 PYSQCRDIGGSPSCSCLPNYIG 540
+C D C C + G
Sbjct: 93 HNGRCLDKINEFQCECPTGFTG 114
Score = 33.3 bits (77), Expect = 0.076
Identities = 31/138 (22%), Positives = 46/138 (33%), Gaps = 37/138 (26%)
Query: 461 CGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPY 520
C + +C + C C G+ G C VN C +PC
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTG---PRCE---------------IDVNECVSNPCQND 56
Query: 521 SQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALC 580
+ C D G C C+P Y G +C ++C++ C +N C
Sbjct: 57 ATCLDQIGEFQCICMPGYEG--VHCEVNT---DECASS--------------PCLHNGRC 97
Query: 581 KVINHTPICTCPDGYTGD 598
+ C CP G+TG
Sbjct: 98 LDKINEFQCECPTGFTGH 115
Score = 33.3 bits (77), Expect = 0.086
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQ 258
N CV C A C C C PG G V C V T+ C SPC N +
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG---VHCE------VNTDECASSPCLHNGR 96
Query: 259 CREVNKQAVCSCLPNYFGS 277
C + + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
Score = 30.6 bits (70), Expect = 0.59
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 19/90 (21%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
VN C+ +PC + C D G C C+P Y G +C EC S+
Sbjct: 45 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV--HCEVNT---DECASS---------- 89
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGD 485
C +N +C + C CP GF G
Sbjct: 90 ----PCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 30.3 bits (69), Expect = 0.82
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 21/94 (22%)
Query: 35 QEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREK 94
+ VN CV +PC + C D G C C+P Y G +C E
Sbjct: 42 EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEG--VHC------------------EV 81
Query: 95 CADPCPGS-CGYNAQCKVINHTPICTCPDGFIGD 127
D C S C +N +C + C CP GF G
Sbjct: 82 NTDECASSPCLHNGRCLDKINEFQCECPTGFTGH 115
Score = 27.6 bits (62), Expect = 6.8
Identities = 31/139 (22%), Positives = 42/139 (30%), Gaps = 41/139 (29%)
Query: 41 CVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCP 100
+PC +C + GS C CL Y G P C E + C
Sbjct: 10 LGANPCEHAGKCINTLGSFECQCLQGYTG--PRC------------------EIDVNECV 49
Query: 101 GS-CGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCN---CVPNAE 156
+ C +A C C C G+ G C + D C C+ N
Sbjct: 50 SNPCQNDATCLDQIGEFQCICMPGYEGV---HCE----------VNTDECASSPCLHNGR 96
Query: 157 CRDGV----CVCLPDYYGD 171
C D + C C + G
Sbjct: 97 CLDKINEFQCECPTGFTGH 115
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 38.1 bits (88), Expect = 0.009
Identities = 39/256 (15%), Positives = 60/256 (23%), Gaps = 58/256 (22%)
Query: 61 CSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTC 120
C C P ++G+ C SE + E C +C C C
Sbjct: 460 CRCGPGWLGSQCEC-------SEEDYRPSQQDECSPREGQPVCSQRGECL----CGQCVC 508
Query: 121 PDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPEC 180
G ++ C + +C G C+C D+ G C C
Sbjct: 509 HSSDFGK---ITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTGY---YC--NC 560
Query: 181 VVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQN 240
++ + + + C G+C PG+ G C
Sbjct: 561 TTRTDTCMSSNGLLCSGRGKCECGSC--------------VCIQPGSYGD---TCE---- 599
Query: 241 EPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG---SPPNCRPECT---VNTDCPLN 294
P P C +C C G C C + +
Sbjct: 600 ----KCPTCPDACTFKKEC--------VECKKFDRGALHDENTCNRYCRDEIESVKELKD 647
Query: 295 KACVNQKCVDPCPGSC 310
C C
Sbjct: 648 TGKDAVNCTYKNEDDC 663
Score = 35.4 bits (81), Expect = 0.061
Identities = 46/282 (16%), Positives = 67/282 (23%), Gaps = 41/282 (14%)
Query: 45 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCG 104
C + + S E + K + + C +C
Sbjct: 379 VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQ 438
Query: 105 YNAQCKVIN--------HTPICTCPDGFIGDA--FLSCHPKPPEPVQPIIQEDTCNCVPN 154
A+ +C C G++G +P + + +E C
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR 498
Query: 155 AECRDGVCVCLPDYYGDGYVSCRPECVV-NSECPRNKACIKYKCKNPCVPGTCGEGAICD 213
EC G CVC +G C + C R K C C
Sbjct: 499 GECLCGQCVCHSSDFGK---ITGKYCECDDFSCVRYKGE------------MCSGHGQCS 543
Query: 214 VVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPN 273
C C TG C + C +C VC P
Sbjct: 544 ----CGDCLCDSDWTGY---YCNCTTRTDTCMSSN-GLLCSGRGKC--ECGSCVC-IQPG 592
Query: 274 YFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRE 315
+G C T C K CV C G+ +
Sbjct: 593 SYG--DTCEKCPTCPDACTFKKECVE--CKKFDRGALHDENT 630
Score = 35.1 bits (80), Expect = 0.094
Identities = 38/196 (19%), Positives = 54/196 (27%), Gaps = 31/196 (15%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADP 98
+ C P P R C C + G + EC + C
Sbjct: 484 DECSPREGQPVCSQRGECLCGQCVCHSSDFG------KITGKYCECDDFS------CVRY 531
Query: 99 CPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECR 158
C + QC C C + G C+ + + C +C
Sbjct: 532 KGEMCSGHGQC----SCGDCLCDSDWTGYY---CNC--TTRTDTCMSSNGLLCSGRGKCE 582
Query: 159 DGVCVCL-PDYYGD---------GYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGE 208
G CVC+ P YGD + + ECV + R + C C
Sbjct: 583 CGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESV 642
Query: 209 GAICDVVNHAVVCTCP 224
+ D AV CT
Sbjct: 643 KELKDTGKDAVNCTYK 658
Score = 31.6 bits (71), Expect = 0.88
Identities = 27/205 (13%), Positives = 45/205 (21%), Gaps = 34/205 (16%)
Query: 403 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCG 462
C + + S E + + + + C +C
Sbjct: 379 VIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQ 438
Query: 463 YNAQCKVIN--------HTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYP 514
A+ +C C G++G C ++ P + C P
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGS---QCEC-------SEEDYRPSQQDECSP 488
Query: 515 SPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSC 574
P R C C + G C + C C
Sbjct: 489 REGQPVCSQRGECLCGQCVCHSSDFG------------KITGKYCECDDFSCVRYKGEMC 536
Query: 575 GYNALCKVINHTPICTCPDGYTGDA 599
+ C C C +TG
Sbjct: 537 SGHGQC----SCGDCLCDSDWTGYY 557
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila
melanogaster} SCOP: g.3.18.1
Length = 26
Score = 33.2 bits (75), Expect = 0.010
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 433 RPECVMNSECPSNEACINEKCGDP 456
RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 32.4 bits (73), Expect = 0.016
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 340 RPECVLNSDCPSNKACIRNKCKNP 363
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 31.6 bits (71), Expect = 0.031
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 282 RPECTVNTDCPLNKACVNQKCVDP 305
RPEC +N+DCP N+ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.23
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 177 RPECVVNSECPRNKACIKYKCKNP 200
RPECV+NS+CP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.27
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 546 RPECVQNNDCSNDKACINEKCQDP 569
RPECV N+DC +++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.2 bits (62), Expect = 0.63
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 75 RPECLQNSECPNDKACIREKCADP 98
RPEC+ NS+CP+++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 35.0 bits (81), Expect = 0.022
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 19/90 (21%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
+ C P+PC C+D S C C + G C + C+ + C
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATCNIKNGRCKQFC-- 99
Query: 569 PCPGSCGYNALCKVINHTPICTCPDGYTGD 598
+ +C+C GY
Sbjct: 100 -----------KTGADSKVLCSCTTGYRLA 118
Score = 33.5 bits (77), Expect = 0.069
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 194 KYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPC 253
+Y + C P C G +C ++ C C G G +N + +
Sbjct: 44 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG---------KNCELDATCNIKNGR 94
Query: 254 GPNSQCREVNKQAVCSCLPNYFGSPPNCRPEC 285
+ + +CSC Y + + C
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLA--PDQKSC 124
Score = 31.6 bits (72), Expect = 0.40
Identities = 24/131 (18%), Positives = 34/131 (25%), Gaps = 39/131 (29%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
+ C P+PC C+D S C C + G NC E
Sbjct: 48 GDQCEPNPCLNGGLCKDDINSYECWCQVGFEG--KNC------------------ELDAT 87
Query: 456 PCPGSCGYNAQCKV-INHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYP 514
+ CK + +C+C G+ + P P
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRL---APDQ---------------KSCKPAVP 129
Query: 515 SPCGPYSQCRD 525
PCG S
Sbjct: 130 FPCGRVSVSHS 140
Score = 31.2 bits (71), Expect = 0.43
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 19/96 (19%)
Query: 32 QDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACI 91
+ C P+PC C+D S C C + G C ++ C
Sbjct: 42 WKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEG------KNCELDATC------- 88
Query: 92 REKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGD 127
+ +C+C G+
Sbjct: 89 ---NIKNG---RCKQFCKTGADSKVLCSCTTGYRLA 118
Score = 30.0 bits (68), Expect = 1.2
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 34/118 (28%)
Query: 151 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTC 206
C+ C+D + C C + G C +++ C
Sbjct: 56 CLNGGLCKDDINSYECWCQVGFEGK-------NCELDATC----------NIKNG----R 94
Query: 207 GEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNK 264
+ + V+C+C G + P P PCG S
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRL---------APDQKSCKPAVPFPCGRVSVSHSPTT 143
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.8 bits (78), Expect = 0.048
Identities = 33/165 (20%), Positives = 52/165 (31%), Gaps = 42/165 (25%)
Query: 362 NPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEY--VNPCIPSPCGPYSQCRDIGGSPSC 419
C+ TC +VF E +Y + C SPC +C+D G +C
Sbjct: 10 RECMEETCSYEEAREVF----EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTC 65
Query: 420 SCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCP 479
+CL + G NC E C + + + C ++ +C+C
Sbjct: 66 TCLEGFEGK--NC--ELFTRKLCSLD--------------NGDCDQFCHEEQNSVVCSCA 107
Query: 480 DGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCR 524
G+ D + P P PCG + R
Sbjct: 108 RGYTLA------------------DNGKACIPTGPYPCGKQTLER 134
Score = 33.0 bits (76), Expect = 0.089
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
+ C SPC +C+D G +C+CL + G +C + C
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK------------NCELF---TRKLCSL 86
Query: 569 PCPGSCGYNALCKVINHTPICTCPDGYTGD 598
+ C ++ +C+C GYT
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 30.7 bits (70), Expect = 0.63
Identities = 17/79 (21%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQ 258
+ C C C CTC G G C + C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK---NCELFTRKL-----CSLDNGDCDQF 94
Query: 259 CREVNKQAVCSCLPNYFGS 277
C E VCSC Y +
Sbjct: 95 CHEEQNSVVCSCARGYTLA 113
Score = 30.3 bits (69), Expect = 0.72
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 201 CVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCR 260
C C ++VVC+C G T + P P PCG + R
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTL---------ADNGKACIPTGPYPCGKQTLER 134
Score = 30.0 bits (68), Expect = 0.96
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
+ C SPC +C+D G +C+CL + G NC R+ C+
Sbjct: 42 GDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG--KNCELF-------------TRKLCSL 86
Query: 98 PCPGSCGYNAQCKVINHTPICTCPDGFIGD 127
+ C ++ +C+C G+
Sbjct: 87 DN---GDCDQFCHEEQNSVVCSCARGYTLA 113
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 36.0 bits (82), Expect = 0.053
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 5/97 (5%)
Query: 355 CIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIG 414
IR+ + G + L P SP E C C +
Sbjct: 153 WIRDVRVQSSLALPVDSGEVK----LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVD 208
Query: 415 GSPSCSC-LPNYIGSPPNCRPECVMNSECPSNEACIN 450
C C + G + E + + S C +
Sbjct: 209 DQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYD 245
Score = 34.4 bits (78), Expect = 0.14
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 162 CVCLPDYYGDGYVSCRPECV-VNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVV 220
+ + V ++ E P + + G C G +C VV+ V
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 221 CTCP-PGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSC 270
C C G G + G C ++++ + S
Sbjct: 213 CDCSRTGFRGKD---------CSQGKEEYIATFKGSEYFCYDLSQNPIQSS 254
Score = 32.9 bits (74), Expect = 0.40
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 209 GAICDVV--NHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQA 266
G I DV + + + + C C V+ QA
Sbjct: 152 GWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA 211
Query: 267 VCSC-LPNYFGSPPNCRPECTVNTDCPLNKACVNQ 300
VC C + G + E + T C +
Sbjct: 212 VCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 32.1 bits (72), Expect = 0.70
Identities = 9/44 (20%), Positives = 11/44 (25%)
Query: 242 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPEC 285
+ CQ C C + C C F P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 32.1 bits (72), Expect = 0.72
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 7/97 (7%)
Query: 430 PNCRPECVMNSECPSNEACINEKCGDPC-PGSCGYNAQCKVINHTPICTCPDGFIGDPFT 488
P E ++ E P++ + G+ G C C V++ +C C
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 489 LCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRD 525
+ E CY P D
Sbjct: 226 SQGKEEYIATFKGSEYF------CYDLSQNPIQSSSD 256
Score = 31.7 bits (71), Expect = 0.83
Identities = 9/44 (20%), Positives = 9/44 (20%)
Query: 506 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 549
P C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.0 bits (69), Expect = 1.4
Identities = 8/46 (17%), Positives = 8/46 (17%)
Query: 393 PEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVM 438
C C C SC C P P
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 1059
Score = 31.0 bits (69), Expect = 1.4
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 392 PPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMN 439
E PC+ +PC CRD C C +C E +
Sbjct: 615 SRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREATVL 661
Score = 31.0 bits (69), Expect = 1.5
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 239 QNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVN 288
PC +PC N CR+ + VC C +C E TV
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREATVL 661
Score = 31.0 bits (69), Expect = 1.5
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 507 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 549
E PC +PC CRD C C +C E
Sbjct: 617 ETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 31.0 bits (69), Expect = 1.6
Identities = 8/40 (20%), Positives = 8/40 (20%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 78
C C C SC C P P
Sbjct: 1018 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT 1057
Score = 31.0 bits (69), Expect = 1.8
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 32 QDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPEC 78
+E PC+ +PC CRD C C +C E
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDC-SGTGYLGRSCEREA 658
Score = 29.8 bits (66), Expect = 3.3
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 1/61 (1%)
Query: 504 DVPEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNCRPECVQNNDCSNDKACI 562
E C C + C C + G + E ++ C
Sbjct: 185 SPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCY 244
Query: 563 N 563
+
Sbjct: 245 D 245
Score = 29.8 bits (66), Expect = 3.9
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 1/61 (1%)
Query: 33 DVQEYVNPCVPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNCRPECLQNSECPNDKACI 91
E C C + C C + G + E + ++ C
Sbjct: 185 SPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCY 244
Query: 92 R 92
Sbjct: 245 D 245
Score = 28.7 bits (63), Expect = 7.7
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 72 PNCRPECLQNSECPNDKACIREKCADPC-PGSCGYNAQCKVINHTPICTCPDGFIGDAFL 130
P E + E PN + + G C C V++ +C C
Sbjct: 166 PVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDC 225
Query: 131 SCHPKPPEP 139
S +
Sbjct: 226 SQGKEEYIA 234
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 34.9 bits (79), Expect = 0.086
Identities = 25/175 (14%), Positives = 42/175 (24%), Gaps = 12/175 (6%)
Query: 418 SCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYN-AQCKVINHTPIC 476
+ C +C S C + +C C G + C+ C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 477 --TCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSC 534
TCP + +P T PE + + Y GS +C
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTD---------HGSCVRAC 287
Query: 535 LPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPIC 589
+ + +C + + S + N T I
Sbjct: 288 GADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 32.6 bits (73), Expect = 0.48
Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 4/161 (2%)
Query: 154 NAECRDGVCVCLPDYYGDGYVS--CRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAI 211
+ C +G C + C +C C +C C + +
Sbjct: 167 DPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLV 226
Query: 212 CDVVNHAVVC--TCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCS 269
C C TCPP +P + E Y+ P + + V +
Sbjct: 227 CRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 270 CLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSC 310
C + + + +C S
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDSLSI 327
Score = 31.8 bits (71), Expect = 0.80
Identities = 26/166 (15%), Positives = 39/166 (23%), Gaps = 9/166 (5%)
Query: 60 SCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYN-AQCKVINHTPIC 118
C +C + C +CA C G + C+ C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 119 --TCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDG---VCVCLPDYY---G 170
TCP + + PE C N D V C D Y
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEE 296
Query: 171 DGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVN 216
DG C+ + ++K C ++
Sbjct: 297 DGVRKCKKCEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSIS 342
Score = 29.5 bits (65), Expect = 3.9
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 3/85 (3%)
Query: 531 SCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNAL-CKVINHTPIC 589
C +C + C + +C C G + L C+ C
Sbjct: 177 GAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATC 236
Query: 590 --TCPDGYTGDAFSGCYPKPPEQQQ 612
TCP + + PE +
Sbjct: 237 KDTCPPLMLYNPTTYQMDVNPEGKY 261
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 33.6 bits (77), Expect = 0.099
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 244 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNC 281
YT CQ C +C E CSC P ++G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 31.3 bits (71), Expect = 0.60
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 511 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSN 557
C C +C + G+ +CSC P + G PEC D +
Sbjct: 121 SCQDMSCSKQGECLETIGNYTCSCYPGFYG------PECEYVRDDDD 161
Score = 30.9 bits (70), Expect = 0.66
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 37 YVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 74
Y C C +C + G+ +CSC P + G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
Score = 30.9 bits (70), Expect = 0.77
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 395 YVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 432
Y C C +C + G+ +CSC P + G P C
Sbjct: 118 YTASCQDMSCSKQGECLETIGNYTCSCYPGFYG--PEC 153
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.1 bits (76), Expect = 0.10
Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
+ C SPC C+D S C CLP + G NC +D N C+
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHK---DDQLIC-VNENGGCEQ 100
Query: 569 PCPGSCGYNALCKVINHTPICTCPDGYTGD 598
C C C +GY+
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
Score = 31.1 bits (71), Expect = 0.53
Identities = 21/90 (23%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
+ C SPC C+D S C CLP + G NC C N C
Sbjct: 47 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICV----NENGGCEQ 100
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGD 485
C C C +G+
Sbjct: 101 YC---------SDHTGTKRSCRCHEGYSLL 121
Score = 29.2 bits (66), Expect = 2.4
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 15/96 (15%)
Query: 32 QDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACI 91
+ C SPC C+D S C CLP + G NC C N+
Sbjct: 41 WISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG--RNCETHKDDQLICVNENGGC 98
Query: 92 REKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGD 127
+ C+D C C +G+
Sbjct: 99 EQYCSD-------------HTGTKRSCRCHEGYSLL 121
Score = 27.7 bits (62), Expect = 7.4
Identities = 21/113 (18%), Positives = 28/113 (24%), Gaps = 30/113 (26%)
Query: 151 CVPNAECRDGV----CVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTC 206
C C+D + C CLP + G +C + G C
Sbjct: 55 CQNGGSCKDQLQSYICFCLPAFEGR---NCETHK---DDQ----------LICVNENGGC 98
Query: 207 GEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQC 259
E D C C G + + V P PCG
Sbjct: 99 -EQYCSDHTGTKRSCRCHEGYSL---------LADGVSCTPTVEYPCGKIPIL 141
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 34.4 bits (78), Expect = 0.10
Identities = 32/224 (14%), Positives = 48/224 (21%), Gaps = 36/224 (16%)
Query: 399 CIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPC- 457
C + G + + + C C + C + C + +C C
Sbjct: 159 CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHG-CTAEGLCCHSECLGNCS 217
Query: 458 -PGSCGYNAQCKVINHTPIC--TCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYP 514
P C+ C TCP + C
Sbjct: 218 QPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVN---------------------- 255
Query: 515 SPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSC 574
+ Y+ C PEC ++ C PCP C
Sbjct: 256 --FSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLL-CTPCLGPCPKVC 312
Query: 575 GYNALCKVI------NHTPICTCPDGYTGDAFSGCYPKPPEQQQ 612
K I CT +G G E +
Sbjct: 313 HLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEA 356
Score = 33.3 bits (75), Expect = 0.26
Identities = 24/166 (14%), Positives = 40/166 (24%), Gaps = 10/166 (6%)
Query: 149 CNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGE 208
C V + C+ C + C + + C + G C +
Sbjct: 161 GTAKGKTNCPATVINGQFVERCWTHSHCQKVC--PTICKSHGCTAEGLCCHSECLGNCSQ 218
Query: 209 GAI------CDVVNHAVVC--TCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCR 260
C C TCPP C + C+ S Q
Sbjct: 219 PDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYV 278
Query: 261 EVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPC 306
N + + C Y + N + + +K +D
Sbjct: 279 IHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSV 324
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 34.6 bits (79), Expect = 0.11
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 1/75 (1%)
Query: 242 PVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQK 301
+ CQ C C + C C F P C T +
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG-PLCNDPGTTYIFSKGGGQITYKW 240
Query: 302 CVDPCPGSCGENREL 316
+ P + + +
Sbjct: 241 PPNDRPSTRADRLAI 255
Score = 32.3 bits (73), Expect = 0.54
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 506 PEPVNPCYPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNCRPEC 549
P C C C SC C + ++ G P C
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
Score = 31.9 bits (72), Expect = 0.66
Identities = 8/42 (19%), Positives = 8/42 (19%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVM 438
C C C SC C P P
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTY 227
Score = 31.9 bits (72), Expect = 0.71
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSC-LPNYIGAPPNCRPEC 78
C C C SC C + ++ G P C
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSG--PLCNDPG 224
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.9 bits (72), Expect = 0.11
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 510 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
+ C + + C R + G+ CL + C P N C +
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVP--APNMTCKDK---------- 52
Query: 569 PCPGSCGYNALCKVINHTPI-CTCPDGYTGDAFSGCY 604
G C A CK+ + I C C + F G +
Sbjct: 53 --NGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVF 87
Score = 28.9 bits (64), Expect = 1.6
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 16/88 (18%)
Query: 397 NPCIPSPCGPYSQC-RDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
+ CI + + C R + G+ CL + C P
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVP--------------APNMTCK 50
Query: 456 PCPGSCGYNAQCKVINHTPI-CTCPDGF 482
G C A+CK+ + I C C
Sbjct: 51 DKNGGCAPEAECKMNDKNEIVCKCTKEG 78
Score = 28.1 bits (62), Expect = 2.9
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 16/88 (18%)
Query: 39 NPCVPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
+ C+ + + C R + G+ CL + C P N C +
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPA--PNMTCKDK---------- 52
Query: 98 PCPGSCGYNAQCKVINHTPI-CTCPDGF 124
G C A+CK+ + I C C
Sbjct: 53 --NGGCAPEAECKMNDKNEIVCKCTKEG 78
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 34.5 bits (79), Expect = 0.12
Identities = 19/139 (13%), Positives = 30/139 (21%), Gaps = 11/139 (7%)
Query: 403 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCR--------PECVMNSECPSNEACINEKCG 454
PC ++ + S CR C + + C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 455 DPCPGSCGYNA--QCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPC 512
+ G T +P T S + P E +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEK-KSLEDKT 153
Query: 513 YPSPCGPYSQCRDIGGSPS 531
Y R + GS +
Sbjct: 154 ERELLESYIDGRIVEGSDA 172
Score = 29.8 bits (67), Expect = 3.1
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 5/126 (3%)
Query: 247 PCQP-SPCGPNSQCREVNKQAVCSCLPNYFGSPPNCR--PECTVNTDCPLNKACVNQKCV 303
PC + + + + + + N+ +P C V C C
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 304 DPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNP 363
+ G+ + D+ R + + +Y + +DC + ++
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGS--GEADCGLRPLFEKKSLEDK 152
Query: 364 CVPGTC 369
Sbjct: 153 TERELL 158
Score = 28.7 bits (64), Expect = 7.3
Identities = 17/142 (11%), Positives = 24/142 (16%), Gaps = 31/142 (21%)
Query: 491 SPKPPEPRPPPQEDVPEPVNPCYP----------------SPCGPYSQCRDIGGSPSCSC 534
S PP E C P PC ++ + S
Sbjct: 1 SEGSSVNLSPPLEQ-------CVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSKHQDF 53
Query: 535 LPNYIGAPPNCR--------PECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHT 586
CR C + C C++ G
Sbjct: 54 NSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAI 113
Query: 587 PICTCPDGYTGDAFSGCYPKPP 608
T Y +
Sbjct: 114 EGATATSEYQTFFNPATFGSGE 135
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 32.0 bits (72), Expect = 0.13
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 20/101 (19%)
Query: 510 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
+ C C S C R + C CL NY C N C+ +
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVE--NPNPTCNEN---------- 52
Query: 569 PCPGSCGYNALCKVINHTP-----ICTCPDGYTGDAFSGCY 604
G C +A C + C C + F G +
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIF 91
Score = 28.6 bits (63), Expect = 2.1
Identities = 19/92 (20%), Positives = 25/92 (27%), Gaps = 20/92 (21%)
Query: 397 NPCIPSPCGPYSQC-RDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
+ C+ C S C R + C CL NY C N C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVEN--------PNPTCNEN---- 52
Query: 456 PCPGSCGYNAQCKVINHTP-----ICTCPDGF 482
G C +A+C + C C
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPD 82
Score = 28.2 bits (62), Expect = 2.6
Identities = 20/92 (21%), Positives = 26/92 (28%), Gaps = 20/92 (21%)
Query: 39 NPCVPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
+ CV C S C R + C CL NY C N C +
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVEN--PNPTCNEN---------- 52
Query: 98 PCPGSCGYNAQCKVINHTP-----ICTCPDGF 124
G C +A+C + C C
Sbjct: 53 --NGGCDADAKCTEEDSGSNGKKITCECTKPD 82
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 30.6 bits (70), Expect = 0.23
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR--PECVQNNDCSNDKACINEKC 566
++ C + QC + GS C C YI A C EC N C N C N
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGT-CKNV-- 61
Query: 567 QDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGC 603
G + CTC +G+ C
Sbjct: 62 ----IGG--FE-----------CTCEEGFEPGPMMTC 81
Score = 29.1 bits (66), Expect = 0.81
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCR--PECVMNSECPSNEACINEKC 453
++ C + QC + GS C C YI + C EC + + C N C N
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCG-NGTCKNV-- 61
Query: 454 GDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLC 490
G + CTC +GF P C
Sbjct: 62 ----IGG--FE-----------CTCEEGFEPGPMMTC 81
Score = 26.8 bits (60), Expect = 5.9
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 22/97 (22%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR--PECLQNSECPNDKACIREKC 95
++ C + QC + GS C C YI A C EC + C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCG---------- 54
Query: 96 ADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSC 132
N CK + CTC +GF ++C
Sbjct: 55 ----------NGTCKNVIGGFECTCEEGFEPGPMMTC 81
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 32.7 bits (73), Expect = 0.24
Identities = 17/122 (13%), Positives = 28/122 (22%), Gaps = 7/122 (5%)
Query: 453 CGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPC 512
+ N Q +++ C C +G + C C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGX-------AC 56
Query: 513 YPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPG 572
+ C C+ Y C + Q +C CI E +
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSA 116
Query: 573 SC 574
C
Sbjct: 117 GC 118
Score = 31.5 bits (70), Expect = 0.58
Identities = 25/192 (13%), Positives = 44/192 (22%), Gaps = 25/192 (13%)
Query: 95 CADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPK-----PPEPVQPIIQEDTC 149
+ + N Q +++ C C +G + + +C
Sbjct: 4 ASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCI 63
Query: 150 NCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEG 209
A+ C C+ Y +C + C + CI
Sbjct: 64 ENPDPAQVNMYXCGCIEGYTLXED-TCVLDVCQYXNCGESGECI---------------- 106
Query: 210 AICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCS 269
+ C+C G +P CQ N C V C
Sbjct: 107 VEYLSEIQSAGCSCAIGXVPNP---EDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQ 163
Query: 270 CLPNYFGSPPNC 281
C+ +
Sbjct: 164 CMEGFTFDXEXN 175
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/160 (10%), Positives = 33/160 (20%), Gaps = 29/160 (18%)
Query: 398 PCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPC 457
C + C C+ Y C + C + C
Sbjct: 55 ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGEC--------- 105
Query: 458 PGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPC 517
+ + C+C G + +P C
Sbjct: 106 ------IVEYLSEIQSAGCSCAIGXVPNP------------EDEXXCTXTGETACQLXCN 147
Query: 518 GPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSN 557
C ++ G C C+ + C+ + +
Sbjct: 148 TDNEVCXNVEGVYXCQCMEGFTFDXEXN--VCLGPHHHHH 185
Score = 27.7 bits (60), Expect = 8.6
Identities = 23/189 (12%), Positives = 34/189 (17%), Gaps = 27/189 (14%)
Query: 43 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPC-PG 101
Q + C C + N C C E C
Sbjct: 9 VDTICXNGQLVQMSNHFXCMCNEGLVHLSENT---------CEEXNECXXETLGXACGEF 59
Query: 102 SCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGV 161
+ C C +G+ + Q ++ C+
Sbjct: 60 GQCIENPDPAQVNMYXCGCIEGYTLXEDTCV----LDVCQYXNCGESGECIVEYLSEIQS 115
Query: 162 CVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVC 221
C C E C + +C V C
Sbjct: 116 AGCSCAIGXVPNPEDEXXCTXTGETA-------------CQLXCNTDNEVCXNVEGVYXC 162
Query: 222 TCPPGTTGS 230
C G T
Sbjct: 163 QCMEGFTFD 171
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 33.2 bits (75), Expect = 0.25
Identities = 13/73 (17%), Positives = 22/73 (30%)
Query: 404 CGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGY 463
C +++CRD C C+ NY G+ C E + I
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 464 NAQCKVINHTPIC 476
+ V+ +
Sbjct: 75 DLHSYVVMNHGRS 87
Score = 32.8 bits (74), Expect = 0.26
Identities = 16/86 (18%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 506 PEPVNPCY--PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACIN 563
P C C +++CRD C C+ NY G C E K I
Sbjct: 2 PLAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIF 61
Query: 564 EKCQDPCPGSCGYNALCKVINHTPIC 589
+ V+ +
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRS 87
Score = 32.4 bits (73), Expect = 0.40
Identities = 14/73 (19%), Positives = 22/73 (30%)
Query: 46 CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGY 105
C +++CRD C C+ NY G C E K I +
Sbjct: 15 CSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT 74
Query: 106 NAQCKVINHTPIC 118
+ V+ +
Sbjct: 75 DLHSYVVMNHGRS 87
Score = 31.3 bits (70), Expect = 0.80
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 1/71 (1%)
Query: 102 SCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGV 161
C +A+C+ C C + G+ C + + +
Sbjct: 14 QCSVHAECRDYATGFCCRCVANYTGNGR-QCVAEGSPQRVNGKVKGRIFVGSSQVPVVFE 72
Query: 162 CVCLPDYYGDG 172
L Y
Sbjct: 73 NTDLHSYVVMN 83
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 33.3 bits (76), Expect = 0.26
Identities = 38/209 (18%), Positives = 47/209 (22%), Gaps = 38/209 (18%)
Query: 41 CVPSPCGPYSQCRDIGGSPSCSCLPNYIGA---PPNCRPECLQNSECPNDKACI------ 91
V + G + + C C C + C
Sbjct: 115 GVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFH 174
Query: 92 REKCADP-CPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCN 150
C C C C C CP GF G +C +
Sbjct: 175 GPHCEKALCTPRCMNGGLC---VTPGFCICPPGFYGV---NCD----------KANCSTT 218
Query: 151 CVPNAECRD-GVCVCLPDYYGD--GYVSCRPECVVNSECPRNKACI------KYKCKNPC 201
C C G C+C P G+ C C +C C C P
Sbjct: 219 CFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPV 278
Query: 202 VPGTCGEGAICDVVNHAVVCTCPPGTTGS 230
CG C N C C G G
Sbjct: 279 CEPGCGAHGTCHEPN---KCQCQEGWHGR 304
Score = 29.8 bits (67), Expect = 2.7
Identities = 51/217 (23%), Positives = 58/217 (26%), Gaps = 46/217 (21%)
Query: 398 PCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPS-NEACINEKCGD- 455
P + P + CL G VMNSE + + N
Sbjct: 86 PTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKT 145
Query: 456 ----PCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNP 511
CPG C C N IC CPDGF G C
Sbjct: 146 CQQAECPGGCRNGGFC---NERRICECPDGFHGP---HCE------------------KA 181
Query: 512 CYPSPCGPYSQCRDIGGSPSCSCLPNYIGA---PPNCRPECVQNNDCSNDKACI------ 562
C C G C C P + G NC C C CI
Sbjct: 182 LCTPRCMNGGLCVTPG---FCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLE 238
Query: 563 NEKCQ-DPCPGSCGYNALCKVINHTPICTCPDGYTGD 598
E+C+ CP C C C C GY GD
Sbjct: 239 GEQCEISKCPQPCRNGGKC---IGKSKCKCSKGYQGD 272
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 31.7 bits (72), Expect = 0.37
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 244 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNC 281
YT CQP C + +C E+ C+C Y+G P C
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG--PQC 153
Score = 27.5 bits (61), Expect = 10.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 37 YVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 74
Y C P C + +C +I + +C+C Y G P C
Sbjct: 118 YTASCQPWSCSGHGECVEIINNYTCNCDVGYYG--PQC 153
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 30.8 bits (69), Expect = 0.39
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 510 NPCYPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
+ C + + C R + G+ CL + C P + C +
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA---SITCEEN---------- 57
Query: 569 PCPGSCGYNALCKVIN-HTPICTCPDGYTGDAFSGCY 604
G C A C + + C C + F G +
Sbjct: 58 --NGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVF 92
Score = 28.9 bits (64), Expect = 1.7
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 397 NPCIPSPCGPYSQC-RDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
+ CI + + C R + G+ CL + C + C N
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKC---VPASITCEEN---------- 57
Query: 456 PCPGSCGYNAQCKVIN-HTPICTCPDG 481
G C A+C + + C C
Sbjct: 58 --NGGCAPEAECTMDDKKEVECKCTKE 82
Score = 28.1 bits (62), Expect = 2.9
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 17/87 (19%)
Query: 39 NPCVPSPCGPYSQC-RDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
+ C+ + + C R + G+ CL + C P + C +
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA---SITCEEN---------- 57
Query: 98 PCPGSCGYNAQCKVIN-HTPICTCPDG 123
G C A+C + + C C
Sbjct: 58 --NGGCAPEAECTMDDKKEVECKCTKE 82
Score = 27.0 bits (59), Expect = 7.9
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 101 GSCGYNAQC-KVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAEC-- 157
+ NA C + ++ T C GF P +E+ C P AEC
Sbjct: 16 TNVPENAACYRYLDGTEEWRCLLGFKEVGGKCV------PASITCEENNGGCAPEAECTM 69
Query: 158 ---RDGVCVCL---PDYYGDGYV 174
++ C C + +G
Sbjct: 70 DDKKEVECKCTKEGSEPLFEGVF 92
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 31.8 bits (71), Expect = 0.44
Identities = 22/104 (21%), Positives = 28/104 (26%), Gaps = 9/104 (8%)
Query: 30 PQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPP---NCRPECLQNSEC-- 84
D +P V P CL G + + +
Sbjct: 76 RSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILX 135
Query: 85 -PNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGD 127
P + + CPG C C N IC CPDGF G
Sbjct: 136 TPQNAIFFKTCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
Score = 31.8 bits (71), Expect = 0.50
Identities = 18/76 (23%), Positives = 21/76 (27%), Gaps = 9/76 (11%)
Query: 529 SPSCSCLPNYIGAPP---NCRPECVQNNDCSNDKA---CINEKCQDPCPGSCGYNALCKV 582
CL G + + N Q CPG C C
Sbjct: 104 QVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC-- 161
Query: 583 INHTPICTCPDGYTGD 598
N IC CPDG+ G
Sbjct: 162 -NERRICECPDGFHGP 176
Score = 30.7 bits (68), Expect = 1.2
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPP---NCRPECVMNSEC---PSNEACIN 450
+P + P CL G + + P N
Sbjct: 85 DPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFEVDVIVMNSEGNTILXTPQNAIFFK 144
Query: 451 EKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGD 485
CPG C C N IC CPDGF G
Sbjct: 145 TCQQAECPGGCRNGGFC---NERRICECPDGFHGP 176
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.5 bits (69), Expect = 0.49
Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 17/93 (18%)
Query: 506 PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEK 565
P+ S C + C D GS SC C + G + ++
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG---------------RFCQREVSFL 55
Query: 566 CQDPCPGSCGYNALCKVINHTPICTCPDGYTGD 598
G C C C+C GY
Sbjct: 56 NCSLDNGGCT--HYCLEEVGWRRCSCAPGYKLG 86
Score = 28.5 bits (64), Expect = 2.3
Identities = 19/109 (17%), Positives = 26/109 (23%), Gaps = 18/109 (16%)
Query: 448 CINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPE 507
C+ PC C + C + C C G+ G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE----------------V 52
Query: 508 PVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCS 556
C G C + G CSC P Y + +C
Sbjct: 53 SFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLG--DDLLQCHPAVKFP 99
Score = 28.5 bits (64), Expect = 2.9
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 32/125 (25%)
Query: 141 QPIIQEDTCNCVPNAECRDGV----CVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYK 196
P+ C + C DG+ C C + G C +
Sbjct: 12 LPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRF-------------------CQREV 52
Query: 197 CKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPN 256
C G C C+C PG ++ + +P PCG
Sbjct: 53 SFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL---------GDDLLQCHPAVKFPCGRP 103
Query: 257 SQCRE 261
+ E
Sbjct: 104 WKRME 108
Score = 27.8 bits (62), Expect = 4.4
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 17/91 (18%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
+ S C + C D GS SC C + G C + ++
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEG--RFC-------------QREVSFLNCS 58
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGDP 486
G C C C+C G+
Sbjct: 59 LDNGGCT--HYCLEEVGWRRCSCAPGYKLGD 87
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 32.3 bits (72), Expect = 0.55
Identities = 24/173 (13%), Positives = 37/173 (21%), Gaps = 11/173 (6%)
Query: 369 CGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGS 428
C C L ++ P C Y R + +
Sbjct: 442 CSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLPL 501
Query: 429 PPNCRPECVM-------NSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDG 481
P R + + A N GD C C + +C C C +
Sbjct: 502 PSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRC----VQGSCVCDEQ 557
Query: 482 FIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSC 534
+ G P P N S + C + +
Sbjct: 558 WGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALHF 610
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 32.0 bits (73), Expect = 0.60
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 16/90 (17%)
Query: 494 PPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNN 553
P P P+ +VP+P P P Q C + + P
Sbjct: 367 PYLPSGTPELEVPKPGQPSEPEHGPSPGQDTF------CQGKADGLYPNP---------R 411
Query: 554 DCSNDKACINEKC-QDPCPGSCGYNALCKV 582
+ S+ +C + Q CP ++ CK
Sbjct: 412 ERSSFYSCAAGRLFQQSCPTGLVFSNSCKC 441
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.30A {Bacillus subtilis}
SCOP: c.66.1.17
Length = 275
Score = 31.8 bits (73), Expect = 0.63
Identities = 8/37 (21%), Positives = 9/37 (24%), Gaps = 2/37 (5%)
Query: 472 HTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEP 508
I T P G FT+ S K
Sbjct: 217 TANIPTYPSGLWT--FTIGSKKYDPLAVEDSRFFDIE 251
>2pt6_A Spermidine synthase; transferase, structural genomics consor
SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium
falciparum} PDB: 2pss_A* 2pt9_A*
Length = 321
Score = 31.5 bits (72), Expect = 0.70
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 472 HTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPC 512
+ I T P G IG CS P ++ +
Sbjct: 258 NISIPTYPCGCIG--ILCCSKTDTGLTKPNKKLESKEFADL 296
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET:
AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A*
3b7p_A* 3rie_A* 2pwp_A*
Length = 283
Score = 31.4 bits (72), Expect = 0.75
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 472 HTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPC 512
+ I T P G IG CS P ++ +
Sbjct: 220 NISIPTYPCGCIG--ILCCSKTDTGLTKPNKKLESKEFADL 258
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 30.5 bits (69), Expect = 0.92
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 244 YTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGS 277
YT C + C + +C E C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 29.0 bits (65), Expect = 3.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 395 YVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGS 428
Y C + C + +C + + +C C P + G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
Score = 29.0 bits (65), Expect = 3.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 37 YVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 74
Y C + C + +C + + +C C P + G C
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
Score = 28.2 bits (63), Expect = 5.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 511 PCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 545
C + C + +C + + +C C P + G C
Sbjct: 121 ACTNTSCSGHGECVETINNYTCKCDPGFSG--LKC 153
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.3 bits (70), Expect = 1.1
Identities = 31/210 (14%), Positives = 48/210 (22%), Gaps = 32/210 (15%)
Query: 391 SPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACIN 450
PP+ P C + + P C N C +
Sbjct: 143 KPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCH 202
Query: 451 EKCGDPC--PGSCGYNAQCKVINHTPIC--TCPDGFIGDPFTLCSPKPPEPRPPPQEDVP 506
+C C P + C+ + +C CP
Sbjct: 203 PECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFE-------------------- 242
Query: 507 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKC 566
C C +I S ++ C EC + ++ C
Sbjct: 243 -------GWRCVDRDFCANILS-AESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPC 294
Query: 567 QDPCPGSCGYNALCKVINHTPICTCPDGYT 596
+ PCP C K I+ G T
Sbjct: 295 EGPCPKVCEEEKKTKTIDSVTSAQMLQGCT 324
Score = 31.0 bits (69), Expect = 1.5
Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 24/218 (11%)
Query: 262 VNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRF 321
V+ + + N + EC + + + +K + Q+
Sbjct: 125 VDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKM 184
Query: 322 LVSSVCLPDYYGDGYVSCRPECVLN-SDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLL 380
S+ C + C PEC+ + S ++ AC+ C++ G C
Sbjct: 185 CPST-CGKRACTENNECCHPECLGSCSAPDNDTACV--ACRHYYYAGVC----------- 230
Query: 381 SFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNS 440
+ + P C C +I S ++ C EC
Sbjct: 231 --------VPACPPNTYRFEGWRCVDRDFCANILS-AESSDSEGFVIHDGECMQECPSGF 281
Query: 441 ECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTC 478
+++ C PCP C + K I+
Sbjct: 282 IRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQM 319
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 31.0 bits (70), Expect = 1.4
Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 13/137 (9%)
Query: 398 PCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPC 457
S + S C ++ + K + C
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYH----------DTDFLGEELDIVAAKSHEAC 317
Query: 458 PGSCGYNAQCKVINHTPI-CTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVN--PCYP 514
C +C+ +TP +C +G L S P + +
Sbjct: 318 QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
Query: 515 SPCGPYSQCRDIGGSPS 531
+ C + R +GG+ S
Sbjct: 378 NECTTKIKPRIVGGTAS 394
Score = 28.3 bits (63), Expect = 9.5
Identities = 12/125 (9%), Positives = 24/125 (19%), Gaps = 14/125 (11%)
Query: 40 PCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPC 99
S + S C ++ + + K + C
Sbjct: 268 RIKKSKALSGFSLQSCRHSIPVFCHSSFYH----------DTDFLGEELDIVAAKSHEAC 317
Query: 100 PGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRD 159
C +C+ + T + C+ K P + R
Sbjct: 318 QKLCTNAVRCQFFTY----TPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRL 373
Query: 160 GVCVC 164
Sbjct: 374 CKMDN 378
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 30.9 bits (69), Expect = 1.6
Identities = 44/303 (14%), Positives = 64/303 (21%), Gaps = 29/303 (9%)
Query: 39 NPCVPSP--CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREK-- 94
+ C+P C C D C Y C CI
Sbjct: 137 STCIPQLWACDNDPDCEDGSDEWPQRCRGLY--VFQGDSSPCSAFEFHCLSGECIHSSWR 194
Query: 95 --CADPCPGSCGYNAQCKVINHTPICTCPDG------FIGDAFLSCHPKPPEPVQPIIQE 146
C C DG D C E +
Sbjct: 195 CDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE--VGCVNV 252
Query: 147 DTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTC 206
C +C G C+ D + CR + N C+
Sbjct: 253 TLCEGPNKFKCHSGECIT-LDKVCNMARDCRDWSDEPIKEC---------GTNECLDNNG 302
Query: 207 GEGAICDVVNHAVVCTCPPGTTGSPLVLCR---PIQNEPVYTNPCQPSPCGPNSQCREVN 263
G +C+ + C CP G C Q+ + C G QC E
Sbjct: 303 GCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 362
Query: 264 KQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLV 323
+ + GS + + E+ + R
Sbjct: 363 QLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYW 422
Query: 324 SSV 326
S +
Sbjct: 423 SDL 425
Score = 28.2 bits (62), Expect = 9.5
Identities = 23/150 (15%), Positives = 35/150 (23%), Gaps = 4/150 (2%)
Query: 431 NCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLC 490
N +C S+ P E NE + S C + C CPDGF C
Sbjct: 276 NMARDCRDWSDEPIKECGTNECLDNNGGCSH----VCNDLKIGYECLCPDGFQLVAQRRC 331
Query: 491 SPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECV 550
P + + Y C Q + Y+ +
Sbjct: 332 EDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKM 391
Query: 551 QNNDCSNDKACINEKCQDPCPGSCGYNALC 580
+ N + N +
Sbjct: 392 TLDRSEYTSLIPNLRNVVALDTEVASNRIY 421
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.3 bits (66), Expect = 2.1
Identities = 26/130 (20%), Positives = 37/130 (28%), Gaps = 32/130 (24%)
Query: 476 CTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPC-------GPYSQCRDIGG 528
C CPDGF CS + PC P+PC + D
Sbjct: 25 CECPDGFTDP---NCSSVVEVASDEEEP---TSAGPCTPNPCHNGGTCEISEAYRGDTFI 78
Query: 529 SPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPI 588
C C + G +C+ N+C + C +C +
Sbjct: 79 GYVCKCPRGFNG--IHCQ---HNINECEVE--------------PCKNGGICTDLVANYS 119
Query: 589 CTCPDGYTGD 598
C CP + G
Sbjct: 120 CECPGEFMGR 129
Score = 28.9 bits (65), Expect = 2.4
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 200 PCVPGTCGEGAIC--DVVNHAVVCTCPPGTTGS---PLVLCRPIQNEPVYTNPCQPSPCG 254
C P C G IC + + + C CP G T +V + EP PC P+PC
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61
Query: 255 PNSQCREVNKQAV-------CSCLPNYFGS 277
C C C + G
Sbjct: 62 NGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 30.3 bits (67), Expect = 2.7
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 15/111 (13%)
Query: 348 DCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPY 407
C ++K C +KC PC C F P +
Sbjct: 53 WCQNHKQC--SKCLEPCKESGDLRKHQCQSF------------CEPLFPKKSYECLTSCE 98
Query: 408 SQCRDIGGSP-SCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPC 457
+ C G C C +++EC + C + CG C
Sbjct: 99 FLKYILLVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTC 149
Score = 29.9 bits (66), Expect = 3.0
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 263 NKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDP-----CPGSCGENRELD 317
N ++ C + S C C + D ++ + + P C SC + +
Sbjct: 47 NNGSLVWCQNHKQCS--KCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYIL 104
Query: 318 AQRFLVSSVCLPDYYGDGYV-SCRPECVLNSDCPSNKACIRNKCKNPCVP 366
+ C G+ +C C ++++C K C N C + C
Sbjct: 105 LVK---QGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQV 151
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase,
structural genomics, PSI, protein structu initiative,
nysgrc; 2.00A {Roseovarius nubinhibens}
Length = 379
Score = 30.0 bits (68), Expect = 2.9
Identities = 7/61 (11%), Positives = 9/61 (14%), Gaps = 5/61 (8%)
Query: 200 PCVPGTCGEGAICDVVNHAVVCTCPPGTT-----GSPLVLCRPIQNEPVYTNPCQPSPCG 254
P V G I + P P +
Sbjct: 290 PVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQGRLYASDT 349
Query: 255 P 255
P
Sbjct: 350 P 350
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 466
Score = 29.8 bits (68), Expect = 3.3
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 18/44 (40%)
Query: 268 CSCLPNYFGSPPNCRPECTVNTDCP-----------LNKACVNQ 300
C C +YFG+ PN +T CP N+ V
Sbjct: 22 CGCRADYFGAEPN------THT-CPVCLGLPGALPVPNRVAVEH 58
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.5 bits (64), Expect = 3.7
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQD 568
++ C SPC C++ GS C C + C++ + + I+ +C+
Sbjct: 4 IDECESSPCI-NGVCKNSPGSFICECSSESTLD--PTKTICIETIKGTCWQTVIDGRCEI 60
Query: 569 PCPGSCGYNALCKVINHTP---------ICTCPDGYTGDAFSGC 603
G+ + C + C GY+ + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQC 104
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI, protein structu initiative, nysgrc; 2.30A
{Roseovarius nubinhibens} PDB: 3fvd_B
Length = 378
Score = 29.2 bits (66), Expect = 4.2
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 200 PCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNP 247
G A+ D + + P + + + ++P+
Sbjct: 290 QMHIEDVGGTALADTAALHLAASTPEANRLASWLGHAHLADDPIPGQG 337
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 27.7 bits (62), Expect = 4.5
Identities = 28/151 (18%), Positives = 42/151 (27%), Gaps = 38/151 (25%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
V+PC + C Y S C C + P +E
Sbjct: 4 VDPCFRANCE-YQCQPLDQTSYLCVCAEGFAPIP--------------------HEPHRC 42
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPS 515
+ N C CP+G+I D +C D+ E N + S
Sbjct: 43 QMFCNQTACPADCDPNTQASCECPEGYILDDGFIC------------TDIDECENGGFCS 90
Query: 516 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR 546
C ++ G+ C C P+ A
Sbjct: 91 -----GVCHNLPGTFECICGPDSALAGQIGT 116
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA
complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga
maritima}
Length = 482
Score = 29.4 bits (67), Expect = 4.8
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 18/44 (40%)
Query: 268 CSCLPNYFGSPPNCRPECTVNTDCP-----------LNKACVNQ 300
CSC + F PPN CP N+ +
Sbjct: 23 CSCPADVFELPPN------TAI-CPVCTGQPGALPVPNEEMIRF 59
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.9 bits (64), Expect = 5.0
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 552 NNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYT 596
N C N CQ C + N + C CPDG
Sbjct: 267 VNWCE-RTTLSNGGCQYLCLPAPQINP----HSPKFTCACPDGML 306
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 29.2 bits (65), Expect = 5.3
Identities = 14/152 (9%), Positives = 39/152 (25%), Gaps = 4/152 (2%)
Query: 289 TDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSD 348
C +N V+++CV P CG + R + + + + ++ +
Sbjct: 134 DTCMMN---VHKRCVMNVPSLCGTDHTERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPN 190
Query: 349 CPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYS 408
S+ +P + + L + + + +
Sbjct: 191 GLSDPYVKLKLIPDPK-SESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD 249
Query: 409 QCRDIGGSPSCSCLPNYIGSPPNCRPECVMNS 440
S S + + +++
Sbjct: 250 LTSRNDFMGSLSFGISELQKAGVDGWFKLLSQ 281
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 29.0 bits (64), Expect = 5.4
Identities = 20/136 (14%), Positives = 31/136 (22%), Gaps = 8/136 (5%)
Query: 379 LLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVM 438
L F ++P + C ++ G P C + P + C
Sbjct: 213 LAHFPETIAGSDAPSLAT---VAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQA 269
Query: 439 NSECPSNEACINEKCGDPCPGSCGYNAQCKVINHT-----PICTCPDGFIGDPFTLCSPK 493
E + S +C C C +GF P S
Sbjct: 270 GYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMP 329
Query: 494 PPEPRPPPQEDVPEPV 509
P P +
Sbjct: 330 CTRPPSAPHYLTAVGM 345
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 28.8 bits (64), Expect = 5.8
Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 495 PEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPS--CSCLPNYIGA---PPNCRPEC 549
RP E+ V P CR+ +P+ C C P + G C P C
Sbjct: 371 DPKRPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPAC 430
Query: 550 VQNNDCSNDKACINEK 565
C C+ +K
Sbjct: 431 RHGGVCVRPNKCLCKK 446
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.9 bits (63), Expect = 6.4
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 131 SCHPKPPEPVQPIIQEDTC--NCVPNAECRDGVCVCLPDYYGDGYVSCRPE---CVVNSE 185
S PP + + + C C + +C GVC C Y +
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDR 235
Query: 186 CPRNKACIKYKCKNPCVPGTCG 207
+ + YK V CG
Sbjct: 236 FEGKLSPLWYKITGGQVGTGCG 257
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 28.5 bits (63), Expect = 7.7
Identities = 31/212 (14%), Positives = 50/212 (23%), Gaps = 18/212 (8%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCS-CLPNYIGSP-----PNCRPECVMNSECPSNEACI 449
VN + + CR +C C+ Y P C + + +C
Sbjct: 269 VNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCH 328
Query: 450 NEKCGDPCPGSCGYNAQCKVINHT---PICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVP 506
+ G+ ++T C + P P P
Sbjct: 329 FDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHP---ERDIRDPNLCEPCTCDP 385
Query: 507 EPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKC 566
I G C C + G + E + + C + C
Sbjct: 386 AGSENGGICDGYTDFSVGLIAGQ--CRCKLHVEGERCDVCKEGFYDLSAEDPYGC--KSC 441
Query: 567 QDPCPGSCGYNALCKVINHTPICTCPDGYTGD 598
G+ C + T C C TG
Sbjct: 442 ACNPLGTIPGGNPC--DSETGYCYCKRLVTGQ 471
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 28.6 bits (63), Expect = 8.2
Identities = 21/176 (11%), Positives = 35/176 (19%), Gaps = 1/176 (0%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGD 455
C + P+ + + + S+E +
Sbjct: 255 EYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE 314
Query: 456 PCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPS 515
+ G + C + C CPDGF C P + + Y
Sbjct: 315 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 374
Query: 516 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
C D + N D S + I
Sbjct: 375 QCEEG-FQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVAL 429
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 28.2 bits (63), Expect = 8.5
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 8/75 (10%)
Query: 394 EYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKC 453
+ + + ++ C C P + E E C+N
Sbjct: 41 DLIEENVYLTERKKNKSHRDIKRMQCECTP--------LSKDERAQGEIACGEDCLNRLL 92
Query: 454 GDPCPGSCGYNAQCK 468
C C C
Sbjct: 93 MIECSSRCPNGDYCS 107
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric
oxide synthase regulation, acetylation, metal-binding,
zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A*
3p8e_A* 3p8p_A*
Length = 308
Score = 28.2 bits (62), Expect = 9.2
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 48 PYSQCRDIGGSPSCSCLP 65
S+ + G +C +
Sbjct: 284 SMSELEKVDGLLTCCSVL 301
Score = 28.2 bits (62), Expect = 9.2
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 406 PYSQCRDIGGSPSCSCLP 423
S+ + G +C +
Sbjct: 284 SMSELEKVDGLLTCCSVL 301
Score = 28.2 bits (62), Expect = 9.2
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 519 PYSQCRDIGGSPSCSCLP 536
S+ + G +C +
Sbjct: 284 SMSELEKVDGLLTCCSVL 301
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.505
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,635,004
Number of extensions: 698037
Number of successful extensions: 5473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3019
Number of HSP's successfully gapped: 1034
Length of query: 660
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 560
Effective length of database: 3,909,693
Effective search space: 2189428080
Effective search space used: 2189428080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)