RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13159
(660 letters)
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 26
Score = 32.8 bits (74), Expect = 0.004
Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 433 RPECVMNSECPSNEACINEKCGDP 456
RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 32.8 bits (74), Expect = 0.005
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 340 RPECVLNSDCPSNKACIRNKCKNP 363
RPECVLNSDCPSN+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 32.0 bits (72), Expect = 0.011
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 282 RPECTVNTDCPLNKACVNQKCVDP 305
RPEC +N+DCP N+ACVNQKC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.084
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 177 RPECVVNSECPRNKACIKYKCKNP 200
RPECV+NS+CP N+AC+ KC++P
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 29.3 bits (65), Expect = 0.096
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 546 RPECVQNNDCSNDKACINEKCQDP 569
RPECV N+DC +++AC+N+KC+DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
Score = 28.1 bits (62), Expect = 0.23
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 75 RPECLQNSECPNDKACIREKCADP 98
RPEC+ NS+CP+++AC+ +KC DP
Sbjct: 1 RPECVLNSDCPSNQACVNQKCRDP 24
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.16
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 28.5 bits (64), Expect = 0.18
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 28.5 bits (64), Expect = 0.19
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
+ C +PC C+D S C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.8 bits (57), Expect = 1.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 245 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
+ C+ +PC C++ C C + G
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTG 229
+ C C G C ++ C CP G G
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEG 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.21
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
VN CV +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 28.5 bits (64), Expect = 0.23
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
VN C+ +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 28.5 bits (64), Expect = 0.23
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
VN C +PC + C D G C C+P Y G
Sbjct: 1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 24.6 bits (54), Expect = 4.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 246 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
N C +PC ++ C + + C C+P Y G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
Score = 23.9 bits (52), Expect = 8.2
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTG 229
N CV C A C C C PG G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEG 32
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 27.7 bits (62), Expect = 0.34
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
Score = 27.7 bits (62), Expect = 0.37
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
Score = 27.7 bits (62), Expect = 0.38
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
+ C SPC C+D S C CLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
Score = 24.3 bits (53), Expect = 5.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 246 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
+ C SPC C++ + +C CLP + G
Sbjct: 3 DQCASSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1njra_ c.50.1.2 (A:) Hypothetical protein Ymr087W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 264
Score = 31.1 bits (70), Expect = 0.39
Identities = 7/56 (12%), Positives = 13/56 (23%)
Query: 431 NCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDP 486
+ A + + + + I H P P I +P
Sbjct: 89 TWFRNQLGGRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP 144
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.6 bits (59), Expect = 0.87
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
Score = 26.6 bits (59), Expect = 0.91
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
Score = 26.6 bits (59), Expect = 0.97
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
+ C SPC +C D C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
Score = 23.9 bits (52), Expect = 9.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 246 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
+ C SPC N +C + + C C + G
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTG 31
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.6 bits (59), Expect = 0.91
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 26.6 bits (59), Expect = 1.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 26.6 bits (59), Expect = 1.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
+ C SPC +C+D G +C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 24.3 bits (53), Expect = 7.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 246 NPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
+ C+ SPC +C++ + C+CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
Score = 23.9 bits (52), Expect = 9.8
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 199 NPCVPGTCGEGAICDVVNHAVVCTCPPGTTG 229
+ C C C CTC G G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 31
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.6 bits (59), Expect = 1.1
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNC 432
++ C + QC + GS C C YI + C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
Score = 26.3 bits (58), Expect = 1.5
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 74
++ C + QC + GS C C YI A C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
Score = 25.9 bits (57), Expect = 2.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 509 VNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNC 545
++ C + QC + GS C C YI A C
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC 41
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.3 bits (58), Expect = 1.4
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 26.3 bits (58), Expect = 1.5
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.9 bits (57), Expect = 1.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
C + C + +C + + +C C P + G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSG 32
Score = 25.9 bits (57), Expect = 2.0
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 245 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
T C + C + +C E C C P + G
Sbjct: 1 TAACTNTSCSGHGECVETINNYTCKCDPGFSG 32
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 26.3 bits (58), Expect = 1.5
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 502 QEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
Q V +PC CG + C D GS SC C + G
Sbjct: 1 QCLVLPLEHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
Score = 25.2 bits (55), Expect = 4.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 38 VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
+PC CG + C D GS SC C + G
Sbjct: 8 EHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
Score = 24.8 bits (54), Expect = 5.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 396 VNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
+PC CG + C D GS SC C + G
Sbjct: 8 EHPCASLCCG-HGTCIDGIGSFSCDCRSGWEG 38
Score = 24.4 bits (53), Expect = 6.8
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 566 CQDPCPGSCGYNALCKVINHTPICTCPDGYTGD 598
+ PC C + C + C C G+ G
Sbjct: 7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 39
Score = 24.4 bits (53), Expect = 7.3
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 192 CIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTG 229
C+ ++PC CG G D + C C G G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIGS-FSCDCRSGWEG 38
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 25.5 bits (56), Expect = 2.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 510 NPCYPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.5 bits (56), Expect = 2.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 39 NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.5 bits (56), Expect = 2.4
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 397 NPCIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
C C +C + G+ +CSC P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
Score = 25.5 bits (56), Expect = 2.6
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 245 TNPCQPSPCGPNSQCREVNKQAVCSCLPNYFG 276
T CQ C +C E CSC P ++G
Sbjct: 1 TASCQDMSCSKQGECLETIGNYTCSCYPGFYG 32
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.6 bits (56), Expect = 2.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 403 PCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPE 435
C +++CRD C C+ NY G+ C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
Score = 24.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 45 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPE 77
C +++CRD C C+ NY G C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
Score = 24.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 516 PCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPE 548
C +++CRD C C+ NY G C E
Sbjct: 8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE 40
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 25.6 bits (56), Expect = 2.7
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 508 PVNPCYPSPCGPYSQCRDIG-GSPSCSCLPN 537
PVNPC PC C G C C
Sbjct: 1 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRT 31
>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 218
Score = 28.1 bits (62), Expect = 3.1
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 486 PFTLCSPKPPEPRPPPQEDVPEP 508
PFTL PKP E P + E
Sbjct: 173 PFTLMHPKPKEEPPHREVPEHET 195
>d2cwja1 d.79.1.1 (A:4-119) Putative endonuclease APE1501 {Aeropyrum
pernix [TaxId: 56636]}
Length = 116
Score = 26.2 bits (57), Expect = 5.7
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 3/95 (3%)
Query: 514 PSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGS 573
P P GPYSQ + G S I P S +A N K G
Sbjct: 2 PKPVGPYSQAVESGCFMFVS---GQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGY 58
Query: 574 CGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPP 608
+ + + T I + P P
Sbjct: 59 SMDDIVKVTVYITDISRFSEFNEVYREYFNRPYPA 93
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.3 bits (53), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 507 EPVNPC--YPSPCGPYSQCRDIGGSPSCSCLPNYIG 540
+ V+ C +PC +C + GS C CL Y G
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 36
Score = 24.3 bits (53), Expect = 7.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 399 CIPSPCGPYSQCRDIGGSPSCSCLPNYIG 427
+PC +C + GS C CL Y G
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTG 36
Score = 24.3 bits (53), Expect = 7.5
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 41 CVPSPCGPYSQCRDIGGSPSCSCLPNYIG 69
+PC +C + GS C CL Y G
Sbjct: 8 LGANPCEHAGKCINTLGSFECQCLQGYTG 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.505
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,857,972
Number of extensions: 169883
Number of successful extensions: 1364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 438
Length of query: 660
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 569
Effective length of database: 1,158,166
Effective search space: 658996454
Effective search space used: 658996454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)