BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13160
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 72 DECS--PNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSL 129
DECS NPC C GS C CL YTG C + +N C ++PC + C L
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGP----RCEIDVNECVSNPCQNDATC-L 60
Query: 130 LDNGFAQCTCLPGY 143
G QC C+PGY
Sbjct: 61 DQIGEFQCICMPGY 74
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
+EC NPC C G C C+P Y G V C + + C +SPC N +C
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG----VHCEVNTDECASSPCLHNGRCLDKI 101
Query: 132 NGFAQCTCLPGYV 144
N F QC C G+
Sbjct: 102 NEF-QCECPTGFT 113
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 72 DECS--PNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSL 129
DECS NPC C GS C CL YTG C + +N C ++PC + C L
Sbjct: 4 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGP----RCEIDVNECVSNPCQNDATC-L 58
Query: 130 LDNGFAQCTCLPGY 143
G QC C+PGY
Sbjct: 59 DQIGEFQCICMPGY 72
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
+EC NPC C G C C+P Y G V C + + C +SPC N +C
Sbjct: 44 NECVSNPCQNDATCLDQIGEFQCICMPGYEG----VHCEVNTDECASSPCLHNGRCLDKI 99
Query: 132 NGFAQCTCLPGYV 144
N F QC C G+
Sbjct: 100 NEF-QCECPTGFT 111
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
F +++ +GD+C+ +PC C+ S +CFCLP + G L C N G
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGGC 98
Query: 124 NTQCSLLDNGFAQCTCLPGY 143
CS C C GY
Sbjct: 99 EQYCSDHTGTKRSCRCHEGY 118
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
F +++ +GD+C+ +PC C+ S +CFCLP + G L C N G
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGGC 98
Query: 124 NTQCSLLDNGFAQCTCLPGY 143
CS C C GY
Sbjct: 99 EQYCSDHTGTKRSCRCHEGY 118
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
F +++ +GD+C+ +PC C+ S +CFCLP + G L C N G
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGGC 98
Query: 124 NTQCSLLDNGFAQCTCLPGY 143
CS C C GY
Sbjct: 99 EQYCSDHTGTKRSCRCHEGY 118
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 35.0 bits (79), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
F +++ +GD+C+ +PC C+ S +CFCLP + G L C N G
Sbjct: 40 FWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGGC 98
Query: 124 NTQCSLLDNGFAQCTCLPGY 143
CS C C GY
Sbjct: 99 EQYCSDHTGTKRSCRCHEGY 118
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 66 MAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNT 125
+++ +GD+C+ +PC C+ S +CFCLP + G L C N G
Sbjct: 1 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGGCEQ 59
Query: 126 QCSLLDNGFAQCTCLPGY 143
CS C C GY
Sbjct: 60 YCSDHTGTKRSCRCHEGY 77
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTG 102
+GD+C+ +PC C+ S +CFCLP + G
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 34
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTG 102
+GD+C+ +PC C+ S +CFCLP + G
Sbjct: 2 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG 34
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 112 PLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
P++PC + C QC LD C C G+ P+ C + C C A C
Sbjct: 3 PVDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRC---QMFCNQTACPAD--C 55
Query: 172 DPNRAPYCFCPEGTM 186
DPN C CPEG +
Sbjct: 56 DPNTQASCECPEGYI 70
>pdb|1DQB|A Chain A, Nmr Structure Of Thrombomodulin Egf(4-5)
Length = 83
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 112 PLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
P++PC + C QC L+ C C G+ P+ C + C C A C
Sbjct: 4 PVDPCFRANC--EYQCQPLNQTSYLCVCAEGFAPIPHEPHRC---QMFCNQTACPAD--C 56
Query: 172 DPNRAPYCFCPEGTM 186
DPN C CPEG +
Sbjct: 57 DPNTQASCECPEGYI 71
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
D+C+ +PC C+ S +CFCLP + G L C N G CS
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQL-ICVNENGGCEQYCSDHT 59
Query: 132 NGFAQCTCLPGY 143
C C GY
Sbjct: 60 GTKRSCRCHEGY 71
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 63 PFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCG 122
F + +GD+C +PC C+ G C CL + G + T L N C
Sbjct: 34 EFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF-TRKLCSLDNGDC- 91
Query: 123 PNTQCSLLDNGFAQCTCLPGYVESPN 148
+ C N C+C GY + N
Sbjct: 92 -DQFCHEEQNSVV-CSCARGYTLADN 115
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
F + +GD+C PNPC C+ S C+C + G + T + N C
Sbjct: 41 FWKQYVDGDQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNI---KNGRC-- 95
Query: 124 NTQCSLLDNGFAQCTCLPGYVESPN 148
C + C+C GY +P+
Sbjct: 96 KQFCKTGADSKVLCSCTTGYRLAPD 120
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
F + +GD+C +PC C+ G C CL + G + T L N C
Sbjct: 40 FWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF-TRKLCSLDNGDC-- 96
Query: 124 NTQCSLLDNGFAQCTCLPGYVESPN 148
+ C N C+C GY + N
Sbjct: 97 DQFCHEEQNSVV-CSCARGYTLADN 120
>pdb|3SEK|C Chain C, Crystal Structure Of The Myostatin:follistatin-Like 3
Complex
Length = 209
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 68 FPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSV 107
P D C CGP CR++ G C C P+ +G P +
Sbjct: 58 LPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARL 97
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 63 PFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTG 102
F + +GD+C +PC C+ G C CL + G
Sbjct: 34 EFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG 73
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 63 PFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCG 122
F + +GD+C PNPC C+ S C+C + G + T + N C
Sbjct: 40 EFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDATCNI---KNGRC- 95
Query: 123 PNTQCSLLDNGFAQCTCLPGYVESPN 148
C + C+C GY +P+
Sbjct: 96 -KQFCKTGADSKVLCSCTTGYRLAPD 120
>pdb|2KCX|A Chain A, Solution Nmr Structure Of Kazal-1 Domain Of Human
Follistatin-Related Protein 3 (Fstl-3). Northeast
Structural Genomics Target Hr6186a
Length = 74
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSV 107
D C CGP CR++ G C C P+ +G P +
Sbjct: 2 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARL 37
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 112 PLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
P++PC + C QC L+ C C G+ P+ C + C C A C
Sbjct: 3 PVDPCFRANC--EYQCQPLNQTSYLCVCAEGFAPIPHEPHRC---QLFCNQTACPAD--C 55
Query: 172 DPNRAPYCFCPEGTM 186
DPN C CPEG +
Sbjct: 56 DPNTQASCECPEGYI 70
>pdb|3B4V|C Chain C, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|D Chain D, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|G Chain G, X-Ray Structure Of Activin In Complex With Fstl3
pdb|3B4V|H Chain H, X-Ray Structure Of Activin In Complex With Fstl3
Length = 237
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 68 FPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSV 107
P D C CGP CR++ G C C P+ +G P +
Sbjct: 67 LPCKDSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARL 106
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 68 FPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQC 127
+ +GD+C +PC C+ G C CL + G + T L N C + C
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF-TRKLCSLDNGDC--DQFC 57
Query: 128 SLLDNGFAQCTCLPGYVESPN 148
N C+C GY + N
Sbjct: 58 HEEQNSVV-CSCARGYTLADN 77
>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram
Spermatozoa
Length = 290
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 96 CLPEYTGDPPSVPCT--------LPLNPCHNSPCGPNTQCSLLDNGFAQCT-CLPGYVES 146
CLP++ PP VP T L N SP + L+D G T G + S
Sbjct: 121 CLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRS 180
Query: 147 PNT 149
N
Sbjct: 181 TNV 183
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 68 FPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQC 127
+ +GD+C +PC C+ G C CL + G + T L N C Q
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF-TRKLCSLDNGDC---DQF 56
Query: 128 SLLDNGFAQCTCLPGYVESPN 148
+ C+C GY + N
Sbjct: 57 CHEEQASVVCSCARGYTLADN 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.522
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,916,148
Number of Sequences: 62578
Number of extensions: 303618
Number of successful extensions: 580
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 81
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)