Query psy13160
Match_columns 186
No_of_seqs 179 out of 2154
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 21:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 99.6 1.2E-14 2.6E-19 116.1 12.0 128 54-186 716-857 (1289)
2 KOG1219|consensus 99.6 5.2E-15 1.1E-19 127.3 8.6 105 72-186 3865-3972(4289)
3 KOG1219|consensus 99.6 1.1E-14 2.3E-19 125.5 9.8 113 9-146 3859-3974(4289)
4 KOG4289|consensus 99.3 1.8E-12 4E-17 108.6 5.3 85 90-184 1220-1308(2531)
5 KOG1214|consensus 99.3 1E-11 2.2E-16 99.8 8.9 119 10-153 730-863 (1289)
6 KOG1217|consensus 99.1 6E-09 1.3E-13 82.5 15.0 175 3-186 158-387 (487)
7 KOG4289|consensus 99.1 2.4E-10 5.2E-15 96.4 6.5 84 54-142 1222-1308(2531)
8 KOG1217|consensus 98.7 2.4E-07 5.2E-12 73.4 10.3 125 54-186 152-302 (487)
9 KOG1225|consensus 98.7 1.7E-07 3.8E-12 73.8 8.7 98 54-186 265-362 (525)
10 KOG1225|consensus 98.5 1.5E-06 3.2E-11 68.7 9.7 103 54-186 234-336 (525)
11 KOG4260|consensus 98.4 1.8E-07 3.9E-12 66.8 3.5 80 95-185 221-303 (350)
12 PF07645 EGF_CA: Calcium-bindi 98.3 1.3E-07 2.8E-12 49.2 0.4 31 156-186 1-34 (42)
13 KOG4260|consensus 98.2 3.4E-06 7.5E-11 60.4 4.8 119 57-186 131-268 (350)
14 PF07645 EGF_CA: Calcium-bindi 98.0 5.7E-06 1.2E-10 43.0 2.3 33 112-145 1-35 (42)
15 smart00179 EGF_CA Calcium-bind 97.8 3.1E-05 6.6E-10 39.3 3.4 31 156-186 1-33 (39)
16 PF00008 EGF: EGF-like domain 97.8 1.3E-05 2.8E-10 38.9 1.6 30 116-146 1-31 (32)
17 smart00179 EGF_CA Calcium-bind 97.7 9.7E-05 2.1E-09 37.4 4.1 31 113-144 2-33 (39)
18 PF00008 EGF: EGF-like domain 97.7 3.1E-05 6.7E-10 37.6 1.8 30 74-103 1-31 (32)
19 PF12662 cEGF: Complement Clr- 97.6 9.1E-05 2E-09 33.1 2.8 24 91-115 1-24 (24)
20 PF12947 EGF_3: EGF domain; I 97.4 0.00011 2.4E-09 36.5 2.0 27 119-146 6-32 (36)
21 PF12662 cEGF: Complement Clr- 97.4 0.00022 4.8E-09 31.9 2.6 24 133-159 1-24 (24)
22 KOG1226|consensus 97.4 0.0022 4.8E-08 52.7 9.6 106 54-171 478-602 (783)
23 cd00054 EGF_CA Calcium-binding 97.3 0.00069 1.5E-08 33.8 4.0 33 113-146 2-35 (38)
24 PF06247 Plasmod_Pvs28: Plasmo 97.2 4.2E-05 9E-10 52.0 -1.3 120 56-185 22-159 (197)
25 cd00054 EGF_CA Calcium-binding 97.2 0.001 2.2E-08 33.1 4.2 33 71-103 2-35 (38)
26 cd00053 EGF Epidermal growth f 96.8 0.0026 5.7E-08 31.0 3.3 25 162-186 5-30 (36)
27 cd00053 EGF Epidermal growth f 96.7 0.0038 8.3E-08 30.4 3.7 28 118-146 5-32 (36)
28 PF12947 EGF_3: EGF domain; I 96.7 0.0014 3.1E-08 32.5 1.9 29 77-105 6-34 (36)
29 smart00181 EGF Epidermal growt 96.6 0.0048 1E-07 30.2 3.4 25 119-145 6-30 (35)
30 smart00181 EGF Epidermal growt 96.4 0.0087 1.9E-07 29.2 3.9 25 77-102 6-30 (35)
31 KOG1226|consensus 96.4 0.076 1.7E-06 44.1 10.9 80 54-146 525-617 (783)
32 PF12661 hEGF: Human growth fa 95.8 0.003 6.5E-08 23.9 0.3 13 55-67 1-13 (13)
33 PF14670 FXa_inhibition: Coagu 95.8 0.007 1.5E-07 30.0 1.7 25 83-107 10-34 (36)
34 PF14670 FXa_inhibition: Coagu 95.4 0.017 3.7E-07 28.6 2.2 21 125-146 10-30 (36)
35 cd01475 vWA_Matrilin VWA_Matri 93.6 0.078 1.7E-06 38.1 3.1 34 150-186 181-217 (224)
36 PF07974 EGF_2: EGF-like domai 93.5 0.16 3.4E-06 24.4 3.1 24 120-146 7-30 (32)
37 PF06247 Plasmod_Pvs28: Plasmo 92.6 0.023 5.1E-07 39.0 -0.7 119 20-146 6-162 (197)
38 cd01475 vWA_Matrilin VWA_Matri 92.1 0.32 6.9E-06 34.9 4.5 40 64-104 181-220 (224)
39 PF12946 EGF_MSP1_1: MSP1 EGF 89.5 0.22 4.8E-06 24.7 1.2 30 116-146 2-32 (37)
40 KOG0994|consensus 89.0 6.9 0.00015 35.0 10.0 54 127-186 878-943 (1758)
41 PF09064 Tme5_EGF_like: Thromb 88.3 0.52 1.1E-05 22.8 1.9 17 170-186 11-27 (34)
42 KOG0994|consensus 82.3 8.6 0.00019 34.5 7.5 11 136-146 1085-1095(1758)
43 PF00954 S_locus_glycop: S-loc 81.6 2.3 4.9E-05 26.8 3.2 31 156-186 76-107 (110)
44 PHA02887 EGF-like protein; Pro 79.1 1.3 2.8E-05 28.1 1.4 15 54-68 108-122 (126)
45 smart00051 DSL delta serrate l 78.4 5.9 0.00013 22.3 3.9 45 91-146 16-61 (63)
46 KOG3516|consensus 75.3 3.4 7.5E-05 36.7 3.3 27 14-40 545-572 (1306)
47 PHA03099 epidermal growth fact 72.2 2.2 4.8E-05 27.6 1.2 15 54-68 67-81 (139)
48 KOG1836|consensus 69.1 16 0.00034 34.5 6.1 47 95-146 760-809 (1705)
49 KOG3516|consensus 65.1 7.9 0.00017 34.6 3.3 40 70-113 544-584 (1306)
50 KOG3514|consensus 65.0 6.4 0.00014 34.9 2.7 35 16-69 625-660 (1591)
51 PHA03099 epidermal growth fact 64.4 11 0.00024 24.5 3.1 28 78-110 52-81 (139)
52 PF01683 EB: EB module; Inter 45.6 46 0.001 17.5 3.4 22 120-146 27-48 (52)
53 KOG0196|consensus 42.9 40 0.00086 29.5 3.9 57 121-185 248-316 (996)
54 KOG3512|consensus 36.8 1.9E+02 0.0041 23.7 6.5 11 136-146 372-383 (592)
55 KOG3514|consensus 33.4 36 0.00077 30.7 2.3 35 73-111 625-660 (1591)
56 smart00180 EGF_Lam Laminin-typ 32.9 40 0.00087 17.4 1.7 15 54-68 18-32 (46)
57 PF00053 Laminin_EGF: Laminin 32.1 49 0.0011 17.1 2.0 18 126-146 12-29 (49)
58 cd00055 EGF_Lam Laminin-type e 30.8 43 0.00093 17.5 1.7 15 54-68 19-33 (50)
59 KOG1836|consensus 23.0 2.9E+02 0.0063 26.9 6.2 47 57-103 760-809 (1705)
No 1
>KOG1214|consensus
Probab=99.61 E-value=1.2e-14 Score=116.12 Aligned_cols=128 Identities=28% Similarity=0.660 Sum_probs=100.1
Q ss_pred ceeeCCCCCC--CCCccCCCCCCCC--CCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcC-----CCCCCCC--CCCC
Q psy13160 54 PECLCNSDCP--FNMAFPEGDECSP--NPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTL-----PLNPCHN--SPCG 122 (186)
Q Consensus 54 ~~C~C~~g~~--~~~c~~~~~~C~~--~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~-----~~~~C~~--~~C~ 122 (186)
|.|.|..||. ++.|. ++++|.. ..|+..++|++.+++|.|.|..+|....++.+|.. .++.|.. ..|.
T Consensus 716 ~tcecs~g~~gdgr~c~-d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g~h~C~ 794 (1289)
T KOG1214|consen 716 YTCECSSGYQGDGRNCV-DENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDGSHTCA 794 (1289)
T ss_pred eEEEEeeccCCCCCCCC-ChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccCccccC
Confidence 6778888998 67784 8888874 45999999999999999999998876655546652 2344542 3465
Q ss_pred CCC--eeeeCCCCeeeeeCCCCCccCCCCCCCCccCCCCCCCCCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 123 PNT--QCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 123 ~~~--~C~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
..+ .|+...++.+.|.|.|||.|+ |..|. ++|+|.++-|+..+.|+|+ +++.|.|.+||.
T Consensus 795 i~g~a~c~~hGgs~y~C~CLPGfsGD---G~~c~-dvDeC~psrChp~A~CyntpgsfsC~C~pGy~ 857 (1289)
T KOG1214|consen 795 IAGQARCVHHGGSTYSCACLPGFSGD---GHQCT-DVDECSPSRCHPAATCYNTPGSFSCRCQPGYY 857 (1289)
T ss_pred cCCceEEEecCCceEEEeecCCccCC---ccccc-cccccCccccCCCceEecCCCcceeecccCcc
Confidence 444 455555543399999999998 67884 8999999999999999999 999999999984
No 2
>KOG1219|consensus
Probab=99.58 E-value=5.2e-15 Score=127.29 Aligned_cols=105 Identities=35% Similarity=0.843 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCCeeeecC-CCeEeeCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCeeeeCCCCeeeeeCCCCCccCCCCC
Q psy13160 72 DECSPNPCGPYTGCRVVS-GSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTI 150 (186)
Q Consensus 72 ~~C~~~~c~~~~~C~~~~-~~~~C~c~~g~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~~~~~~~ 150 (186)
+.|..+||.+++.|...+ +.|.|.|++.|.|. .|+.+++.|.++||..+++|+...++| .|.|+.||+|.
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~----~CEi~~epC~snPC~~GgtCip~~n~f-~CnC~~gyTG~---- 3935 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGN----HCEIDLEPCASNPCLTGGTCIPFYNGF-LCNCPNGYTGK---- 3935 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCc----ccccccccccCCCCCCCCEEEecCCCe-eEeCCCCccCc----
Confidence 778889999999999877 68999999999999 998889999999999999999999999 99999999976
Q ss_pred CCCccC-CCCCCCCCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 151 RGCVER-RQPCEPNVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 151 ~~c~~~-~~~C~~~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
.|+.+ +++|..++|..+|.|.|. |+|.|.|.+||.
T Consensus 3936 -~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3936 -RCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred -eeecccccccccccccCCceeeccCCceEeccChhHh
Confidence 78777 899999999999999999 899999999874
No 3
>KOG1219|consensus
Probab=99.58 E-value=1.1e-14 Score=125.47 Aligned_cols=113 Identities=27% Similarity=0.551 Sum_probs=100.9
Q ss_pred CCCCCCCCCCCCCCCCCCeecc--CCCeeEecCCCCCCCCCCCCCCcceeeCCCCCCCCCccCCCCCCCCCCCCCCCeee
Q psy13160 9 YPSNDSLACKPNPCDPYSSCSV--YSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMAFPEGDECSPNPCGPYTGCR 86 (186)
Q Consensus 9 ~~~~~~~~c~~~~C~~~~~C~~--~~~~~C~C~~c~~~~~~C~~~C~~~C~C~~g~~~~~c~~~~~~C~~~~c~~~~~C~ 86 (186)
.|..-.+.|..+||.++|.|.. .|.|.|. |++.|+|..|+.++.+|.++||..+++|+
T Consensus 3859 gC~l~~d~C~~npCqhgG~C~~~~~ggy~Ck--------------------CpsqysG~~CEi~~epC~snPC~~GgtCi 3918 (4289)
T KOG1219|consen 3859 GCSLLTDPCNDNPCQHGGTCISQPKGGYKCK--------------------CPSQYSGNHCEIDLEPCASNPCLTGGTCI 3918 (4289)
T ss_pred cccccccccccCcccCCCEecCCCCCceEEe--------------------CcccccCcccccccccccCCCCCCCCEEE
Confidence 3544348899999999999998 5566665 45589999999999999999999999999
Q ss_pred ecCCCeEeeCCCCCcCCCCCCCCcCC-CCCCCCCCCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 87 VVSGSAVCFCLPEYTGDPPSVPCTLP-LNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 87 ~~~~~~~C~c~~g~~~~~~~~~c~~~-~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
...+.|.|.|+.||+|. .|+.+ +++|..++|.+++.|++..|+| +|-|.+||.|.
T Consensus 3919 p~~n~f~CnC~~gyTG~----~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf-~CncT~g~~gr 3974 (4289)
T KOG1219|consen 3919 PFYNGFLCNCPNGYTGK----RCEARGISECSKNVCGTGGQCINIPGSF-HCNCTPGILGR 3974 (4289)
T ss_pred ecCCCeeEeCCCCccCc----eeecccccccccccccCCceeeccCCce-EeccChhHhcc
Confidence 99999999999999999 99866 8999999999999999999999 99999999875
No 4
>KOG4289|consensus
Probab=99.32 E-value=1.8e-12 Score=108.64 Aligned_cols=85 Identities=34% Similarity=0.899 Sum_probs=76.7
Q ss_pred CCeEeeCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCeeeeCCCCeeeeeCCCCCccCCCCCCCCccCCC--CCCCCCCCC
Q psy13160 90 GSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQ--PCEPNVCGA 167 (186)
Q Consensus 90 ~~~~C~c~~g~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~--~C~~~~C~~ 167 (186)
+.+.|.|++||+++ .|+..+|.|.++||.+++.|....++| .|.|.+||+|. .|+.++. .|.+..|.+
T Consensus 1220 nglrCrCPpGFTgd----~CeTeiDlCYs~pC~nng~C~srEggY-tCeCrpg~tGe-----hCEvs~~agrCvpGvC~n 1289 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGD----YCETEIDLCYSGPCGNNGRCRSREGGY-TCECRPGFTGE-----HCEVSARAGRCVPGVCKN 1289 (2531)
T ss_pred CceeEeCCCCCCcc----cccchhHhhhcCCCCCCCceEEecCce-eEEecCCcccc-----ceeeecccCccccceecC
Confidence 45899999999999 998899999999999999999999999 99999999986 7866543 688999999
Q ss_pred CCeecCC--CCCeeeCCCC
Q psy13160 168 GAVCDPN--RAPYCFCPEG 184 (186)
Q Consensus 168 ~~~C~~~--~~~~C~C~~g 184 (186)
+++|++. |++.|.|+.|
T Consensus 1290 ggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1290 GGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCEEeecCCCceeccCCCc
Confidence 9999987 7899999986
No 5
>KOG1214|consensus
Probab=99.31 E-value=1e-11 Score=99.75 Aligned_cols=119 Identities=25% Similarity=0.586 Sum_probs=86.3
Q ss_pred CCCCCCCCC--CCCCCCCCeecc-CCCeeEecCCCCCCCCCCCCCCcceeeCCCCCC--CCCccC-----CCCCCCC--C
Q psy13160 10 PSNDSLACK--PNPCDPYSSCSV-YSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCP--FNMAFP-----EGDECSP--N 77 (186)
Q Consensus 10 ~~~~~~~c~--~~~C~~~~~C~~-~~~~~C~C~~c~~~~~~C~~~C~~~C~C~~g~~--~~~c~~-----~~~~C~~--~ 77 (186)
...|+++|. .+.|+.+++|+| +++|.|+|.. --.|. +.+|.. .++.|.. .
T Consensus 730 ~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~------------------gy~F~dd~~tCV~i~~pap~n~Ce~g~h 791 (1289)
T KOG1214|consen 730 NCVDENECATGFHRCGPNSVCINLPGSYRCECRS------------------GYEFADDRHTCVLITPPAPANPCEDGSH 791 (1289)
T ss_pred CCCChhhhccCCCCCCCCceeecCCCceeEEEee------------------cceeccCCcceEEecCCCCCCccccCcc
Confidence 446888996 455999999999 9999998764 00111 122321 1233332 2
Q ss_pred CCCC--CCeeeecC-CCeEeeCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCeeeeCCCCeeeeeCCCCCccCCCCCCCC
Q psy13160 78 PCGP--YTGCRVVS-GSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGC 153 (186)
Q Consensus 78 ~c~~--~~~C~~~~-~~~~C~c~~g~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~g~~~~~~~~~~c 153 (186)
.|.- .+.|+... ++|.|.|.+||.|.+. .|. ++|+|.++.|+..++|.++.+++ .|+|.+||.|+ |..|
T Consensus 792 ~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~--~c~-dvDeC~psrChp~A~Cyntpgsf-sC~C~pGy~GD---Gf~C 863 (1289)
T KOG1214|consen 792 TCAIAGQARCVHHGGSTYSCACLPGFSGDGH--QCT-DVDECSPSRCHPAATCYNTPGSF-SCRCQPGYYGD---GFQC 863 (1289)
T ss_pred ccCcCCceEEEecCCceEEEeecCCccCCcc--ccc-cccccCccccCCCceEecCCCcc-eeecccCccCC---Ccee
Confidence 2332 24555444 5799999999999876 787 88999999999999999999999 99999999997 5666
No 6
>KOG1217|consensus
Probab=99.10 E-value=6e-09 Score=82.49 Aligned_cols=175 Identities=26% Similarity=0.582 Sum_probs=122.9
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCeecc-CCCeeEecCC------CCCC-------------------CCCCCC----
Q psy13160 3 TAYLPPYPSNDSLACK--PNPCDPYSSCSV-YSEHVAMCDP------CSGP-------------------QAPWLP---- 50 (186)
Q Consensus 3 ~~~~~~~~~~~~~~c~--~~~C~~~~~C~~-~~~~~C~C~~------c~~~-------------------~~~C~~---- 50 (186)
.+|.+..+..+.++|. ..+|.+.+.|.+ .++|.|.|.. +... ...|..
T Consensus 158 ~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~~~~c~~~~~~ 237 (487)
T KOG1217|consen 158 EGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGARGPECEVSIVE 237 (487)
T ss_pred CCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCCCCCceEecceeccCCCCCCCCCccccccc
Confidence 4566666666557886 445988999999 8889999987 3321 111111
Q ss_pred -----C-Cc-----ceeeCCCCCCCCC--ccCCCCCCCCCC-CCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcCCCCCC
Q psy13160 51 -----H-CR-----PECLCNSDCPFNM--AFPEGDECSPNP-CGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPC 116 (186)
Q Consensus 51 -----~-C~-----~~C~C~~g~~~~~--c~~~~~~C~~~~-c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~~~~~C 116 (186)
. |. +.|.+..||.+.. ...++++|.... |.+++.|++..+.|.|.|.++|.+... ..+. +..+|
T Consensus 238 ~~~~~~~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~-~~~~-~~~~C 315 (487)
T KOG1217|consen 238 CASGDGTCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC-TECV-DVDEC 315 (487)
T ss_pred ccCCCCcccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC-cccc-ccccc
Confidence 2 22 6888899999775 223678887654 888899999888899999999999832 1122 44566
Q ss_pred C----CCCCCCCCee--eeCCCCeeeeeCCCCCccCCCCCCCCccCC-CCCCCCCCCCCCeecC-C-CCCeeeCCCCCC
Q psy13160 117 H----NSPCGPNTQC--SLLDNGFAQCTCLPGYVESPNTIRGCVERR-QPCEPNVCGAGAVCDP-N-RAPYCFCPEGTM 186 (186)
Q Consensus 117 ~----~~~C~~~~~C--~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~-~~C~~~~C~~~~~C~~-~-~~~~C~C~~g~~ 186 (186)
. ..+|..+..| ....+.+ .|.|.++|.+ ..|+ .. ++|...++..++.|.+ . ++|+|.|+.+|.
T Consensus 316 ~~~~~~~~c~~g~~C~~~~~~~~~-~C~c~~~~~g-----~~C~-~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~ 387 (487)
T KOG1217|consen 316 SPRNAGGPCANGGTCNTLGSFGGF-RCACGPGFTG-----RRCE-DSNDECASSPCCPGGTCVNETPGSYRCACPAGFA 387 (487)
T ss_pred cccccCCcCCCCcccccCCCCCCC-CcCCCCCCCC-----Cccc-cCCccccCCccccCCEeccCCCCCeEecCCCccc
Confidence 3 3457776677 3334456 7999998655 4785 44 4898777888899998 5 789999999873
No 7
>KOG4289|consensus
Probab=99.08 E-value=2.4e-10 Score=96.43 Aligned_cols=84 Identities=32% Similarity=0.699 Sum_probs=75.4
Q ss_pred ceeeCCCCCCCCCccCCCCCCCCCCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcCCC--CCCCCCCCCCCCeeeeCC
Q psy13160 54 PECLCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPL--NPCHNSPCGPNTQCSLLD 131 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~~~~~~C~~~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~~~--~~C~~~~C~~~~~C~~~~ 131 (186)
+.|.|++||+|..|+.++|.|-+.||.+++.|....+.|.|.|.++|+|. .|+.+. -.|.++.|.++++|++..
T Consensus 1222 lrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGe----hCEvs~~agrCvpGvC~nggtC~~~~ 1297 (2531)
T KOG4289|consen 1222 LRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGE----HCEVSARAGRCVPGVCKNGGTCVNLL 1297 (2531)
T ss_pred eeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCcccc----ceeeecccCccccceecCCCEEeecC
Confidence 88999999999999999999999999999999999999999999999999 996332 367788899999999876
Q ss_pred C-CeeeeeCCCC
Q psy13160 132 N-GFAQCTCLPG 142 (186)
Q Consensus 132 ~-~~~~C~C~~g 142 (186)
. ++ .|.|+.|
T Consensus 1298 nggf-~c~Cp~g 1308 (2531)
T KOG4289|consen 1298 NGGF-CCHCPYG 1308 (2531)
T ss_pred CCce-eccCCCc
Confidence 4 66 8999988
No 8
>KOG1217|consensus
Probab=98.67 E-value=2.4e-07 Score=73.39 Aligned_cols=125 Identities=26% Similarity=0.589 Sum_probs=92.7
Q ss_pred ceeeCCCCCCCCCccCCCCCCCC--CCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcCC-------------------
Q psy13160 54 PECLCNSDCPFNMAFPEGDECSP--NPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLP------------------- 112 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~~~~~~C~~--~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~~------------------- 112 (186)
+.|.|..||.+..+....++|.. .+|.+.+.|.+..+.|.|.|.++|.+. .+...
T Consensus 152 ~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~----~~~~~~~~~~c~~~~~~~~~~g~~ 227 (487)
T KOG1217|consen 152 FRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGS----TCETTGNGGTCVDSVACSCPPGAR 227 (487)
T ss_pred eeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCC----cCcCCCCCceEecceeccCCCCCC
Confidence 67999999999888644467863 458888999998888999999999887 33211
Q ss_pred CCCCCC--CCCCCC-CeeeeCCCCeeeeeCCCCCccCCCCCCCCccCCCCCCCCC-CCCCCeecCC-CCCeeeCCCCCC
Q psy13160 113 LNPCHN--SPCGPN-TQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNV-CGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 113 ~~~C~~--~~C~~~-~~C~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~C~~~~-C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
...|.. ..+... +.|++..+++ .|.+++||.+... ..+ .++++|.... |.++++|.+. +.|.|.|++||+
T Consensus 228 ~~~c~~~~~~~~~~~~~c~~~~~~~-~C~~~~g~~~~~~--~~~-~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~ 302 (487)
T KOG1217|consen 228 GPECEVSIVECASGDGTCVNTVGSY-TCRCPEGYTGDAC--VTC-VDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFT 302 (487)
T ss_pred CCCcccccccccCCCCcccccCCce-eeeCCCCcccccc--cee-eeccccCCCCccCCCCeeecCCCcceeeCCCCCC
Confidence 112211 123322 7889999999 9999999987620 234 4788998653 8888999988 569999999985
No 9
>KOG1225|consensus
Probab=98.65 E-value=1.7e-07 Score=73.79 Aligned_cols=98 Identities=27% Similarity=0.688 Sum_probs=71.4
Q ss_pred ceeeCCCCCCCCCccCCCCCCCCCCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCeeeeCCCC
Q psy13160 54 PECLCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLDNG 133 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~~~~~~C~~~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~ 133 (186)
.+|+|++||.|..|. ...|... |..++.+++. .|.|.++|.|+ .|+ +..|. .+|..++.|+..
T Consensus 265 G~CIC~~Gf~G~dC~--e~~Cp~~-cs~~g~~~~g----~CiC~~g~~G~----dCs--~~~cp-adC~g~G~Ci~G--- 327 (525)
T KOG1225|consen 265 GRCICPPGFTGDDCD--ELVCPVD-CSGGGVCVDG----ECICNPGYSGK----DCS--IRRCP-ADCSGHGKCIDG--- 327 (525)
T ss_pred CeEeCCCCCcCCCCC--cccCCcc-cCCCceecCC----EeecCCCcccc----ccc--cccCC-ccCCCCCcccCC---
Confidence 789999999999995 2346434 7666666533 79999999999 885 33453 679888999833
Q ss_pred eeeeeCCCCCccCCCCCCCCccCCCCCCCCCCCCCCeecCCCCCeeeCCCCCC
Q psy13160 134 FAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPYCFCPEGTM 186 (186)
Q Consensus 134 ~~~C~C~~g~~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~~C~C~~g~~ 186 (186)
+|.|.+||+|. .|... .|..++.|+|. |.|..||+
T Consensus 328 --~C~C~~Gy~G~-----~C~~~-------~C~~~g~cv~g----C~C~~Gw~ 362 (525)
T KOG1225|consen 328 --ECLCDEGYTGE-----LCIQR-------ACSGGGQCVNG----CKCKKGWR 362 (525)
T ss_pred --ceEeCCCCcCC-----ccccc-------ccCCCceeccC----ceeccCcc
Confidence 89999999876 67532 26667777652 78888874
No 10
>KOG1225|consensus
Probab=98.48 E-value=1.5e-06 Score=68.65 Aligned_cols=103 Identities=29% Similarity=0.657 Sum_probs=75.3
Q ss_pred ceeeCCCCCCCCCccCCCCCCCCCCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCeeeeCCCC
Q psy13160 54 PECLCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLDNG 133 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~~~~~~C~~~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~ 133 (186)
..|.|..+|.+..|. ...| +..|...+.|+.. .|.|.+||.|. .|. +-.|... |..++.+++.
T Consensus 234 ~ic~c~~~~~g~~c~--~~~C-~~~c~~~g~c~~G----~CIC~~Gf~G~----dC~--e~~Cp~~-cs~~g~~~~g--- 296 (525)
T KOG1225|consen 234 GICECPEGYFGPLCS--TIYC-PGGCTGRGQCVEG----RCICPPGFTGD----DCD--ELVCPVD-CSGGGVCVDG--- 296 (525)
T ss_pred ceeecCCceeCCccc--cccC-CCCCcccceEeCC----eEeCCCCCcCC----CCC--cccCCcc-cCCCceecCC---
Confidence 468999999988885 2335 3445555677643 79999999999 885 3446543 7766666655
Q ss_pred eeeeeCCCCCccCCCCCCCCccCCCCCCCCCCCCCCeecCCCCCeeeCCCCCC
Q psy13160 134 FAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPYCFCPEGTM 186 (186)
Q Consensus 134 ~~~C~C~~g~~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~~~~C~C~~g~~ 186 (186)
.|.|++||.|. .|+ +..| +.+|+.++.|+. -+|.|.+||+
T Consensus 297 --~CiC~~g~~G~-----dCs--~~~c-padC~g~G~Ci~---G~C~C~~Gy~ 336 (525)
T KOG1225|consen 297 --ECICNPGYSGK-----DCS--IRRC-PADCSGHGKCID---GECLCDEGYT 336 (525)
T ss_pred --EeecCCCcccc-----ccc--cccC-CccCCCCCcccC---CceEeCCCCc
Confidence 89999999876 774 3456 468999999983 2599999985
No 11
>KOG4260|consensus
Probab=98.45 E-value=1.8e-07 Score=66.77 Aligned_cols=80 Identities=24% Similarity=0.553 Sum_probs=58.2
Q ss_pred eCCCCCcCCCCCCCCcCCCCCCCC--CCCCCCCeeeeCCCCeeeeeCCCCCccCCCCCCCCccCCCCCCCCCCCCCCeec
Q psy13160 95 FCLPEYTGDPPSVPCTLPLNPCHN--SPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCD 172 (186)
Q Consensus 95 ~c~~g~~~~~~~~~c~~~~~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~C~~~~C~~~~~C~ 172 (186)
.|+.||..... .|. +||+|.. .+|..+..|+|+.|+| .|..++||... -..|+...+-|+ ..+..|+
T Consensus 221 kCkkGW~lde~--gCv-DvnEC~~ep~~c~~~qfCvNteGSf-~C~dk~Gy~~g---~d~C~~~~d~~~----~kn~~c~ 289 (350)
T KOG4260|consen 221 KCKKGWKLDEE--GCV-DVNECQNEPAPCKAHQFCVNTEGSF-KCEDKEGYKKG---VDECQFCADVCA----SKNRPCM 289 (350)
T ss_pred hhcccceeccc--ccc-cHHHHhcCCCCCChhheeecCCCce-EecccccccCC---hHHhhhhhhhcc----cCCCCcc
Confidence 68899986643 677 9999984 5788889999999999 99999998642 113332222222 2355788
Q ss_pred CC-CCCeeeCCCCC
Q psy13160 173 PN-RAPYCFCPEGT 185 (186)
Q Consensus 173 ~~-~~~~C~C~~g~ 185 (186)
|+ +.|+|+|.+|+
T Consensus 290 ni~~~~r~v~f~~~ 303 (350)
T KOG4260|consen 290 NIDGQYRCVCFSGL 303 (350)
T ss_pred cCCccEEEEecccc
Confidence 88 88999998875
No 12
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.33 E-value=1.3e-07 Score=49.19 Aligned_cols=31 Identities=23% Similarity=0.558 Sum_probs=26.8
Q ss_pred CCCCCCC--CCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 156 RRQPCEP--NVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 156 ~~~~C~~--~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
|||||+. +.|..++.|+|+ |+|+|.|++||+
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 5788874 569888999999 999999999984
No 13
>KOG4260|consensus
Probab=98.17 E-value=3.4e-06 Score=60.36 Aligned_cols=119 Identities=26% Similarity=0.438 Sum_probs=75.5
Q ss_pred eCCCCCCCCCccCCCCCCCCCCCCCCCeeeec---CCCeEeeCCCCCcCCCCCCCCcC-C-------CCCCCC--CCCCC
Q psy13160 57 LCNSDCPFNMAFPEGDECSPNPCGPYTGCRVV---SGSAVCFCLPEYTGDPPSVPCTL-P-------LNPCHN--SPCGP 123 (186)
Q Consensus 57 ~C~~g~~~~~c~~~~~~C~~~~c~~~~~C~~~---~~~~~C~c~~g~~~~~~~~~c~~-~-------~~~C~~--~~C~~ 123 (186)
-|+.|..|+.|.+-..- ...||..++.|... .|+-.|.|.+||.|. .|.. . .++-.. ..|+.
T Consensus 131 CCp~gtyGpdCl~Cpgg-ser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp----~C~~Cg~eyfes~Rne~~lvCt~Ch~ 205 (350)
T KOG4260|consen 131 CCPDGTYGPDCLQCPGG-SERPCFGNGSCHGDGSREGSGKCKCETGYTGP----LCRYCGIEYFESSRNEQHLVCTACHE 205 (350)
T ss_pred ccCCCCcCCccccCCCC-CcCCcCCCCcccCCCCCCCCCcccccCCCCCc----cccccchHHHHhhcccccchhhhhhh
Confidence 37778778887521110 13578777888643 256789999999988 6530 0 010000 01221
Q ss_pred C--CeeeeCCCCeeee-eCCCCCccCCCCCCCCccCCCCCC--CCCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 124 N--TQCSLLDNGFAQC-TCLPGYVESPNTIRGCVERRQPCE--PNVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 124 ~--~~C~~~~~~~~~C-~C~~g~~~~~~~~~~c~~~~~~C~--~~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
. +.|... ++. .| .|..||..+ ...| +|||+|. +.+|..+..|+|+ |+|.|.+++||.
T Consensus 206 ~C~~~Csg~-~~k-~C~kCkkGW~ld---e~gC-vDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~ 268 (350)
T KOG4260|consen 206 GCLGVCSGE-SSK-GCSKCKKGWKLD---EEGC-VDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYK 268 (350)
T ss_pred hhhcccCCC-CCC-Chhhhcccceec---cccc-ccHHHHhcCCCCCChhheeecCCCceEeccccccc
Confidence 1 134222 222 44 589999876 3468 6999997 4679888899999 999999999984
No 14
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.98 E-value=5.7e-06 Score=42.95 Aligned_cols=33 Identities=27% Similarity=0.817 Sum_probs=28.4
Q ss_pred CCCCCCC--CCCCCCCeeeeCCCCeeeeeCCCCCcc
Q psy13160 112 PLNPCHN--SPCGPNTQCSLLDNGFAQCTCLPGYVE 145 (186)
Q Consensus 112 ~~~~C~~--~~C~~~~~C~~~~~~~~~C~C~~g~~~ 145 (186)
+|+||.. ..|..++.|+|+.|+| .|.|++||..
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy-~C~C~~Gy~~ 35 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSY-SCSCPPGYEL 35 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEE-EEEESTTEEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCE-EeeCCCCcEE
Confidence 4788875 3688889999999999 9999999984
No 15
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.82 E-value=3.1e-05 Score=39.28 Aligned_cols=31 Identities=29% Similarity=0.673 Sum_probs=25.8
Q ss_pred CCCCCCC-CCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 156 RRQPCEP-NVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 156 ~~~~C~~-~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
++++|.. .+|..++.|++. ++|.|.|++||+
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 3577776 689888899988 889999999984
No 16
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.80 E-value=1.3e-05 Score=38.90 Aligned_cols=30 Identities=37% Similarity=1.028 Sum_probs=25.9
Q ss_pred CCCCCCCCCCeeeeCC-CCeeeeeCCCCCccC
Q psy13160 116 CHNSPCGPNTQCSLLD-NGFAQCTCLPGYVES 146 (186)
Q Consensus 116 C~~~~C~~~~~C~~~~-~~~~~C~C~~g~~~~ 146 (186)
|.+++|.++++|+... ++| .|.|++||+|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y-~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGY-TCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEE-EEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCE-EeECCCCCccC
Confidence 4456899999999998 888 99999999874
No 17
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.69 E-value=9.7e-05 Score=37.36 Aligned_cols=31 Identities=29% Similarity=0.933 Sum_probs=26.9
Q ss_pred CCCCCC-CCCCCCCeeeeCCCCeeeeeCCCCCc
Q psy13160 113 LNPCHN-SPCGPNTQCSLLDNGFAQCTCLPGYV 144 (186)
Q Consensus 113 ~~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~ 144 (186)
+++|.. .+|.+++.|+++.++| .|.|++||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~-~C~C~~g~~ 33 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSY-RCECPPGYT 33 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCe-EeECCCCCc
Confidence 566766 6898888999999999 999999997
No 18
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.66 E-value=3.1e-05 Score=37.56 Aligned_cols=30 Identities=43% Similarity=0.923 Sum_probs=26.4
Q ss_pred CCCCCCCCCCeeeecC-CCeEeeCCCCCcCC
Q psy13160 74 CSPNPCGPYTGCRVVS-GSAVCFCLPEYTGD 103 (186)
Q Consensus 74 C~~~~c~~~~~C~~~~-~~~~C~c~~g~~~~ 103 (186)
|.+++|.++++|+... ..|.|.|.+||.|.
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 4467899999999998 89999999999875
No 19
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.62 E-value=9.1e-05 Score=33.14 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=20.4
Q ss_pred CeEeeCCCCCcCCCCCCCCcCCCCC
Q psy13160 91 SAVCFCLPEYTGDPPSVPCTLPLNP 115 (186)
Q Consensus 91 ~~~C~c~~g~~~~~~~~~c~~~~~~ 115 (186)
+|.|+|.+||...+.++.|. +|||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~-DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCE-DIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccc-cCCC
Confidence 58899999999888878897 8875
No 20
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.43 E-value=0.00011 Score=36.53 Aligned_cols=27 Identities=37% Similarity=0.972 Sum_probs=21.9
Q ss_pred CCCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 119 SPCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 119 ~~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
..|+.++.|+++.++| .|+|++||.|+
T Consensus 6 ~~C~~nA~C~~~~~~~-~C~C~~Gy~Gd 32 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSY-TCTCKPGYEGD 32 (36)
T ss_dssp GGS-TTCEEEE-TTSE-EEEE-CEEECC
T ss_pred CCCCCCcEeecCCCCE-EeECCCCCccC
Confidence 4688899999999999 99999999987
No 21
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.40 E-value=0.00022 Score=31.89 Aligned_cols=24 Identities=42% Similarity=0.952 Sum_probs=18.7
Q ss_pred CeeeeeCCCCCccCCCCCCCCccCCCC
Q psy13160 133 GFAQCTCLPGYVESPNTIRGCVERRQP 159 (186)
Q Consensus 133 ~~~~C~C~~g~~~~~~~~~~c~~~~~~ 159 (186)
+| .|.|++||...+ +++.| .||||
T Consensus 1 sy-~C~C~~Gy~l~~-d~~~C-~DIdE 24 (24)
T PF12662_consen 1 SY-TCSCPPGYQLSP-DGRSC-EDIDE 24 (24)
T ss_pred CE-EeeCCCCCcCCC-CCCcc-ccCCC
Confidence 46 899999998654 46788 48875
No 22
>KOG1226|consensus
Probab=97.36 E-value=0.0022 Score=52.66 Aligned_cols=106 Identities=23% Similarity=0.547 Sum_probs=63.2
Q ss_pred ceeeCCCCCCCCCccCCCC---------CCCC----CCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCcCCCCCCCC--
Q psy13160 54 PECLCNSDCPFNMAFPEGD---------ECSP----NPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHN-- 118 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~~~~~---------~C~~----~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~~~~~~C~~-- 118 (186)
..|.|.+||.|+.|+-..+ .|.. .+|...+.|+=. .|.|.+...+...+..|+-+.-.|..
T Consensus 478 G~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~fCECDnfsC~r~~ 553 (783)
T KOG1226|consen 478 GQCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGKFCECDNFSCERHK 553 (783)
T ss_pred cceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeeeeeeccCccccccc
Confidence 7899999999999873222 2321 146656666421 56777665533233377633333432
Q ss_pred -CCCCCCCeeeeCCCCeeeeeCCCCCccCCCCCCCCccCCCCCCC---CCCCCCCee
Q psy13160 119 -SPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEP---NVCGAGAVC 171 (186)
Q Consensus 119 -~~C~~~~~C~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~C~~---~~C~~~~~C 171 (186)
..|..++.|.=. +|+|.+||+|... +|+.+.+.|.. ..|...+.|
T Consensus 554 g~lC~g~G~C~CG-----~CvC~~GwtG~~C---~C~~std~C~~~~G~iCSGrG~C 602 (783)
T KOG1226|consen 554 GVLCGGHGRCECG-----RCVCNPGWTGSAC---NCPLSTDTCESSDGQICSGRGTC 602 (783)
T ss_pred CcccCCCCeEeCC-----cEEcCCCCccCCC---CCCCCCccccCCCCceeCCCcee
Confidence 248877888544 8999999998733 45556677753 234444444
No 23
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.28 E-value=0.00069 Score=33.75 Aligned_cols=33 Identities=27% Similarity=0.882 Sum_probs=27.2
Q ss_pred CCCCCC-CCCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 113 LNPCHN-SPCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 113 ~~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
+++|.. .+|..++.|.+..++| .|.|++||.+.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~-~C~C~~g~~g~ 35 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSY-RCSCPPGYTGR 35 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCe-EeECCCCCcCC
Confidence 456665 6788788999999999 99999999764
No 24
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=97.21 E-value=4.2e-05 Score=52.02 Aligned_cols=120 Identities=30% Similarity=0.630 Sum_probs=67.1
Q ss_pred eeCCCCCC---CCCccCCCCCCC-----CCCCCCCCeeeecC-----CCeEeeCCCCCcCCCCCCCCcCCCCCCCCCCCC
Q psy13160 56 CLCNSDCP---FNMAFPEGDECS-----PNPCGPYTGCRVVS-----GSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCG 122 (186)
Q Consensus 56 C~C~~g~~---~~~c~~~~~~C~-----~~~c~~~~~C~~~~-----~~~~C~c~~g~~~~~~~~~c~~~~~~C~~~~C~ 122 (186)
|.|..||. ...|+ ...+|. ..+|...+.|.+.. ..|.|.|.+||..... .|. .+.|....|.
T Consensus 22 C~Cnegfvl~~EntCE-~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCv--p~~C~~~~Cg 96 (197)
T PF06247_consen 22 CKCNEGFVLKNENTCE-EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCV--PNKCNNKDCG 96 (197)
T ss_dssp EEESTTEEEEETTEEE-E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEE--EGGGSS---T
T ss_pred EEcCCCcEEccccccc-cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEc--hhhcCceecC
Confidence 34455776 44565 444453 35788899998765 4699999999986633 453 4567666777
Q ss_pred CCCeeeeCC---CCeeeeeCCCCCccCCCCCCCCccCC-CCCCCCCCCCCCeecCC-CCCeeeCCCCC
Q psy13160 123 PNTQCSLLD---NGFAQCTCLPGYVESPNTIRGCVERR-QPCEPNVCGAGAVCDPN-RAPYCFCPEGT 185 (186)
Q Consensus 123 ~~~~C~~~~---~~~~~C~C~~g~~~~~~~~~~c~~~~-~~C~~~~C~~~~~C~~~-~~~~C~C~~g~ 185 (186)
.+.|+..+ ... .|+|..|+..+ ....|..+- ..|+ ..|..+.+|... +-|+|.+.+|+
T Consensus 97 -~GKCI~d~~~~~~~-~CSC~IGkV~~--dn~kCtk~G~T~C~-LKCk~nE~CK~~~~~Y~C~~~~~~ 159 (197)
T PF06247_consen 97 -SGKCILDPDNPNNP-TCSCNIGKVPD--DNKKCTKTGETKCS-LKCKENEECKLVDGYYKCVCKEGF 159 (197)
T ss_dssp -TEEEEEEEGGGSEE-EEEE-TEEETT--TTTESEEEE---------TTTEEEEEETTEEEEEE-TT-
T ss_pred -CCeEEecCCCCCCc-eeEeeeceEec--cCCcccCCCcccee-eecCCCcceeeeCcEEEeecCCCC
Confidence 46786443 345 89999998732 233453322 2443 346677789887 45899998876
No 25
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.20 E-value=0.001 Score=33.08 Aligned_cols=33 Identities=45% Similarity=0.846 Sum_probs=27.4
Q ss_pred CCCCCC-CCCCCCCeeeecCCCeEeeCCCCCcCC
Q psy13160 71 GDECSP-NPCGPYTGCRVVSGSAVCFCLPEYTGD 103 (186)
Q Consensus 71 ~~~C~~-~~c~~~~~C~~~~~~~~C~c~~g~~~~ 103 (186)
+++|.. .+|.+.+.|.+..+.|.|.|..+|.+.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 35 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCC
Confidence 456665 678878899998899999999999886
No 26
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.75 E-value=0.0026 Score=31.04 Aligned_cols=25 Identities=32% Similarity=0.784 Sum_probs=20.8
Q ss_pred CCCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 162 PNVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 162 ~~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
..+|..++.|++. ++|.|.|+.||.
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~ 30 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYT 30 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCc
Confidence 4567778899988 789999999984
No 27
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.69 E-value=0.0038 Score=30.42 Aligned_cols=28 Identities=29% Similarity=0.892 Sum_probs=23.6
Q ss_pred CCCCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 118 NSPCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 118 ~~~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
..+|.+++.|+++.++| .|.|+.||.+.
T Consensus 5 ~~~C~~~~~C~~~~~~~-~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSY-RCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCe-EeECCCCCccc
Confidence 45677778999999999 99999999764
No 28
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.68 E-value=0.0014 Score=32.53 Aligned_cols=29 Identities=38% Similarity=0.802 Sum_probs=22.5
Q ss_pred CCCCCCCeeeecCCCeEeeCCCCCcCCCC
Q psy13160 77 NPCGPYTGCRVVSGSAVCFCLPEYTGDPP 105 (186)
Q Consensus 77 ~~c~~~~~C~~~~~~~~C~c~~g~~~~~~ 105 (186)
..|...+.|.++.++|.|+|.+||.|++.
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDGF 34 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCST
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCCc
Confidence 35778899999999999999999998743
No 29
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.57 E-value=0.0048 Score=30.19 Aligned_cols=25 Identities=32% Similarity=0.978 Sum_probs=21.8
Q ss_pred CCCCCCCeeeeCCCCeeeeeCCCCCcc
Q psy13160 119 SPCGPNTQCSLLDNGFAQCTCLPGYVE 145 (186)
Q Consensus 119 ~~C~~~~~C~~~~~~~~~C~C~~g~~~ 145 (186)
.+|.++ .|+++.++| .|.|++||.+
T Consensus 6 ~~C~~~-~C~~~~~~~-~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSY-TCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCe-EeECCCCCcc
Confidence 467776 899999999 9999999987
No 30
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.44 E-value=0.0087 Score=29.24 Aligned_cols=25 Identities=44% Similarity=0.925 Sum_probs=21.8
Q ss_pred CCCCCCCeeeecCCCeEeeCCCCCcC
Q psy13160 77 NPCGPYTGCRVVSGSAVCFCLPEYTG 102 (186)
Q Consensus 77 ~~c~~~~~C~~~~~~~~C~c~~g~~~ 102 (186)
.+|.++ .|++..+.|.|.|.+||.+
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 567776 8998889999999999988
No 31
>KOG1226|consensus
Probab=96.39 E-value=0.076 Score=44.12 Aligned_cols=80 Identities=25% Similarity=0.622 Sum_probs=49.0
Q ss_pred ceeeCCCCCC----CCCccCCCCCCCC---CCCCCCCeeeecCCCeEeeCCCCCcCCCCCCCCc--CCCCCCCCC---CC
Q psy13160 54 PECLCNSDCP----FNMAFPEGDECSP---NPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCT--LPLNPCHNS---PC 121 (186)
Q Consensus 54 ~~C~C~~g~~----~~~c~~~~~~C~~---~~c~~~~~C~~~~~~~~C~c~~g~~~~~~~~~c~--~~~~~C~~~---~C 121 (186)
..|.|..... |+.|+-+.-.|.. ..|..++.|.=. .|+|.+||+|+ .|. .+.+.|.+. .|
T Consensus 525 GqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~GwtG~----~C~C~~std~C~~~~G~iC 596 (783)
T KOG1226|consen 525 GQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGWTGS----ACNCPLSTDTCESSDGQIC 596 (783)
T ss_pred CceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCCccC----CCCCCCCCccccCCCCcee
Confidence 7778876665 7778644433432 246666666422 68899999988 664 344556531 36
Q ss_pred CCCCeeeeCCCCeeeeeCCCC-CccC
Q psy13160 122 GPNTQCSLLDNGFAQCTCLPG-YVES 146 (186)
Q Consensus 122 ~~~~~C~~~~~~~~~C~C~~g-~~~~ 146 (186)
...++|.=. +|+|... |.|.
T Consensus 597 SGrG~C~Cg-----~C~C~~~~~sG~ 617 (783)
T KOG1226|consen 597 SGRGTCECG-----RCKCTDPPYSGE 617 (783)
T ss_pred CCCceeeCC-----ceEcCCCCcCcc
Confidence 666666443 6777655 6654
No 32
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=95.84 E-value=0.003 Score=23.87 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=8.5
Q ss_pred eeeCCCCCCCCCc
Q psy13160 55 ECLCNSDCPFNMA 67 (186)
Q Consensus 55 ~C~C~~g~~~~~c 67 (186)
.|+|++||+|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3677888877765
No 33
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=95.82 E-value=0.007 Score=30.03 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=19.3
Q ss_pred CeeeecCCCeEeeCCCCCcCCCCCC
Q psy13160 83 TGCRVVSGSAVCFCLPEYTGDPPSV 107 (186)
Q Consensus 83 ~~C~~~~~~~~C~c~~g~~~~~~~~ 107 (186)
..|++.+++|.|.|++||....+++
T Consensus 10 h~C~~~~g~~~C~C~~Gy~L~~D~~ 34 (36)
T PF14670_consen 10 HICVNTPGSYRCSCPPGYKLAEDGR 34 (36)
T ss_dssp SEEEEETTSEEEE-STTEEE-TTSS
T ss_pred CCCccCCCceEeECCCCCEECcCCC
Confidence 3899999999999999998775543
No 34
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=95.38 E-value=0.017 Score=28.64 Aligned_cols=21 Identities=29% Similarity=0.817 Sum_probs=17.2
Q ss_pred CeeeeCCCCeeeeeCCCCCccC
Q psy13160 125 TQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 125 ~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
..|++++++| +|.|++||...
T Consensus 10 h~C~~~~g~~-~C~C~~Gy~L~ 30 (36)
T PF14670_consen 10 HICVNTPGSY-RCSCPPGYKLA 30 (36)
T ss_dssp SEEEEETTSE-EEE-STTEEE-
T ss_pred CCCccCCCce-EeECCCCCEEC
Confidence 4799999999 99999999865
No 35
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=93.62 E-value=0.078 Score=38.05 Aligned_cols=34 Identities=32% Similarity=0.669 Sum_probs=26.3
Q ss_pred CCCCccCCCCCCC--CCCCCCCeecCC-CCCeeeCCCCCC
Q psy13160 150 IRGCVERRQPCEP--NVCGAGAVCDPN-RAPYCFCPEGTM 186 (186)
Q Consensus 150 ~~~c~~~~~~C~~--~~C~~~~~C~~~-~~~~C~C~~g~~ 186 (186)
+..|. ++++|.. +.|. ..|.+. |+|.|.|++||+
T Consensus 181 ~~~C~-~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~g~~ 217 (224)
T cd01475 181 GKICV-VPDLCATLSHVCQ--QVCISTPGSYLCACTEGYA 217 (224)
T ss_pred cccCc-CchhhcCCCCCcc--ceEEcCCCCEEeECCCCcc
Confidence 35684 7888974 4564 479988 899999999985
No 36
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=93.50 E-value=0.16 Score=24.44 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=19.2
Q ss_pred CCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 120 PCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 120 ~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
.|..+++|+...+ +|+|.+||+|.
T Consensus 7 ~C~~~G~C~~~~g---~C~C~~g~~G~ 30 (32)
T PF07974_consen 7 ICSGHGTCVSPCG---RCVCDSGYTGP 30 (32)
T ss_pred ccCCCCEEeCCCC---EEECCCCCcCC
Confidence 5778899986633 89999999875
No 37
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=92.65 E-value=0.023 Score=38.98 Aligned_cols=119 Identities=20% Similarity=0.482 Sum_probs=64.5
Q ss_pred CCCCCCCeecc-CCCeeEecCC---------CCCCCCCCC----------CC--Cc----------ceeeCCCCCC--CC
Q psy13160 20 NPCDPYSSCSV-YSEHVAMCDP---------CSGPQAPWL----------PH--CR----------PECLCNSDCP--FN 65 (186)
Q Consensus 20 ~~C~~~~~C~~-~~~~~C~C~~---------c~~~~~~C~----------~~--C~----------~~C~C~~g~~--~~ 65 (186)
..| ++|..+. .++|.|.|.+ |+ ...+|. .- |. |.|.|..||. ..
T Consensus 6 T~C-KNG~LiQMSNHfEC~Cnegfvl~~EntCE-~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~ 83 (197)
T PF06247_consen 6 TIC-KNGYLIQMSNHFECKCNEGFVLKNENTCE-EKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG 83 (197)
T ss_dssp ----BTEEEEEESSEEEEEESTTEEEEETTEEE-E----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS
T ss_pred ccc-cCCEEEEccCceEEEcCCCcEEccccccc-cceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC
Confidence 346 4677788 8889999977 33 222222 11 22 8899999998 33
Q ss_pred CccCCCCCCCCCCCCCCCeeeecCC---CeEeeCCCCCcCCCCCCCCcC-CCCCCCCCCCCCCCeeeeCCCCeeeeeCCC
Q psy13160 66 MAFPEGDECSPNPCGPYTGCRVVSG---SAVCFCLPEYTGDPPSVPCTL-PLNPCHNSPCGPNTQCSLLDNGFAQCTCLP 141 (186)
Q Consensus 66 ~c~~~~~~C~~~~c~~~~~C~~~~~---~~~C~c~~g~~~~~~~~~c~~-~~~~C~~~~C~~~~~C~~~~~~~~~C~C~~ 141 (186)
.|. .+.|....|+ .+.|+..+. ...|+|.-|+... +...|.. ...+|+. .|..+..|....+=| .|.+..
T Consensus 84 vCv--p~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~-dn~kCtk~G~T~C~L-KCk~nE~CK~~~~~Y-~C~~~~ 157 (197)
T PF06247_consen 84 VCV--PNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPD-DNKKCTKTGETKCSL-KCKENEECKLVDGYY-KCVCKE 157 (197)
T ss_dssp SEE--EGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETT-TTTESEEEE---------TTTEEEEEETTEE-EEEE-T
T ss_pred eEc--hhhcCceecC-CCeEEecCCCCCCceeEeeeceEec-cCCcccCCCccceee-ecCCCcceeeeCcEE-EeecCC
Confidence 453 3446666677 578875542 3589998888721 2124431 1234543 477778898888777 999999
Q ss_pred CCccC
Q psy13160 142 GYVES 146 (186)
Q Consensus 142 g~~~~ 146 (186)
++.++
T Consensus 158 ~~~~~ 162 (197)
T PF06247_consen 158 GFPGD 162 (197)
T ss_dssp T-EEE
T ss_pred CCCCC
Confidence 98765
No 38
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=92.10 E-value=0.32 Score=34.91 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=29.2
Q ss_pred CCCccCCCCCCCCCCCCCCCeeeecCCCeEeeCCCCCcCCC
Q psy13160 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDP 104 (186)
Q Consensus 64 ~~~c~~~~~~C~~~~c~~~~~C~~~~~~~~C~c~~g~~~~~ 104 (186)
+..|. +.++|...+......|.++.++|.|.|.+||...+
T Consensus 181 ~~~C~-~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~ 220 (224)
T cd01475 181 GKICV-VPDLCATLSHVCQQVCISTPGSYLCACTEGYALLE 220 (224)
T ss_pred cccCc-CchhhcCCCCCccceEEcCCCCEEeECCCCccCCC
Confidence 45675 67778643322335899999999999999998753
No 39
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=89.53 E-value=0.22 Score=24.68 Aligned_cols=30 Identities=33% Similarity=0.813 Sum_probs=19.7
Q ss_pred CCCCCCCCCCeeeeCC-CCeeeeeCCCCCccC
Q psy13160 116 CHNSPCGPNTQCSLLD-NGFAQCTCLPGYVES 146 (186)
Q Consensus 116 C~~~~C~~~~~C~~~~-~~~~~C~C~~g~~~~ 146 (186)
|....|+.++.|++.. |.+ .|+|..||...
T Consensus 2 C~~~~cP~NA~C~~~~dG~e-ecrCllgyk~~ 32 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSE-ECRCLLGYKKV 32 (37)
T ss_dssp -SSS---TTEEEEEETTSEE-EEEE-TTEEEE
T ss_pred ccCccCCCCcccEEcCCCCE-EEEeeCCcccc
Confidence 3345678888998887 677 99999999754
No 40
>KOG0994|consensus
Probab=88.98 E-value=6.9 Score=35.05 Aligned_cols=54 Identities=30% Similarity=0.656 Sum_probs=30.8
Q ss_pred eeeCCCCeeee-eCCCCCccCCCCCCCCccCCCCCCCCCCCC-------C-CeecC---CCCCeeeCCCCCC
Q psy13160 127 CSLLDNGFAQC-TCLPGYVESPNTIRGCVERRQPCEPNVCGA-------G-AVCDP---NRAPYCFCPEGTM 186 (186)
Q Consensus 127 C~~~~~~~~~C-~C~~g~~~~~~~~~~c~~~~~~C~~~~C~~-------~-~~C~~---~~~~~C~C~~g~~ 186 (186)
|.+...++ .| +|..||.|++.-|. ...|.+=+|.. + -.|.. +....|.|.+||+
T Consensus 878 CqD~T~G~-~CdrCl~GyyGdP~lg~-----g~~CrPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~ 943 (1758)
T KOG0994|consen 878 CQDSTTGH-SCDRCLDGYYGDPRLGS-----GIGCRPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYS 943 (1758)
T ss_pred cccccccc-chhhhhccccCCcccCC-----CCCCCCCCCCCCCccchhccccccccccccceeeecccCcc
Confidence 55666677 67 69999999874322 12232222221 1 13432 1356899999985
No 41
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=88.32 E-value=0.52 Score=22.78 Aligned_cols=17 Identities=59% Similarity=1.368 Sum_probs=11.7
Q ss_pred eecCCCCCeeeCCCCCC
Q psy13160 170 VCDPNRAPYCFCPEGTM 186 (186)
Q Consensus 170 ~C~~~~~~~C~C~~g~~ 186 (186)
.|.....+.|.|++||+
T Consensus 11 ~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCCCCceeCCCceE
Confidence 55443345799999985
No 42
>KOG0994|consensus
Probab=82.28 E-value=8.6 Score=34.50 Aligned_cols=11 Identities=45% Similarity=1.168 Sum_probs=8.6
Q ss_pred eeeCCCCCccC
Q psy13160 136 QCTCLPGYVES 146 (186)
Q Consensus 136 ~C~C~~g~~~~ 146 (186)
.|+|.|||-|.
T Consensus 1085 QCqCkpGfGGR 1095 (1758)
T KOG0994|consen 1085 QCQCKPGFGGR 1095 (1758)
T ss_pred ceeccCCCCCc
Confidence 68899988654
No 43
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=81.65 E-value=2.3 Score=26.80 Aligned_cols=31 Identities=29% Similarity=0.886 Sum_probs=23.2
Q ss_pred CCCCCCC-CCCCCCCeecCCCCCeeeCCCCCC
Q psy13160 156 RRQPCEP-NVCGAGAVCDPNRAPYCFCPEGTM 186 (186)
Q Consensus 156 ~~~~C~~-~~C~~~~~C~~~~~~~C~C~~g~~ 186 (186)
..+.|.. ..|+..+.|.......|.|.+||.
T Consensus 76 p~d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 76 PKDQCDVYGFCGPNGICNSNNSPKCSCLPGFE 107 (110)
T ss_pred cccCCCCccccCCccEeCCCCCCceECCCCcC
Confidence 3456753 679999999644556799999984
No 44
>PHA02887 EGF-like protein; Provisional
Probab=79.07 E-value=1.3 Score=28.11 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=13.5
Q ss_pred ceeeCCCCCCCCCcc
Q psy13160 54 PECLCNSDCPFNMAF 68 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~ 68 (186)
..|.|..||.|.+|+
T Consensus 108 psCrC~~GYtG~RCE 122 (126)
T PHA02887 108 KFCICNKGYTGIRCD 122 (126)
T ss_pred ceeECCCCcccCCCC
Confidence 678999999999996
No 45
>smart00051 DSL delta serrate ligand.
Probab=78.39 E-value=5.9 Score=22.28 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=27.8
Q ss_pred CeEeeCCCCCcCCCCCCCCcCCCCCCCC-CCCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 91 SAVCFCLPEYTGDPPSVPCTLPLNPCHN-SPCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 91 ~~~C~c~~g~~~~~~~~~c~~~~~~C~~-~~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
.+.-.|.++|.|. .|. ..|.. .....+..|.. .| .++|.+||+|.
T Consensus 16 ~~rv~C~~~~yG~----~C~---~~C~~~~d~~~~~~Cd~-~G---~~~C~~Gw~G~ 61 (63)
T smart00051 16 QIRVTCDENYYGE----GCN---KFCRPRDDFFGHYTCDE-NG---NKGCLEGWMGP 61 (63)
T ss_pred EEEeeCCCCCcCC----ccC---CEeCcCccccCCccCCc-CC---CEecCCCCcCC
Confidence 3456788999888 774 22332 12344456643 23 57899999875
No 46
>KOG3516|consensus
Probab=75.26 E-value=3.4 Score=36.69 Aligned_cols=27 Identities=33% Similarity=0.781 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCeecc-CCCeeEecCC
Q psy13160 14 SLACKPNPCDPYSSCSV-YSEHVAMCDP 40 (186)
Q Consensus 14 ~~~c~~~~C~~~~~C~~-~~~~~C~C~~ 40 (186)
+|.|.|++|.+++.|.. ...|.|-|..
T Consensus 545 ~drClPN~CehgG~C~Qs~~~f~C~C~~ 572 (1306)
T KOG3516|consen 545 SDRCLPNPCEHGGKCSQSWDDFECNCEL 572 (1306)
T ss_pred ccccCCccccCCCcccccccceeEeccc
Confidence 68899999999999998 8888888763
No 47
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=72.18 E-value=2.2 Score=27.58 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=13.4
Q ss_pred ceeeCCCCCCCCCcc
Q psy13160 54 PECLCNSDCPFNMAF 68 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~ 68 (186)
+.|.|..||+|.+|+
T Consensus 67 ~~CrC~~GYtGeRCE 81 (139)
T PHA03099 67 MYCRCSHGYTGIRCQ 81 (139)
T ss_pred ceeECCCCccccccc
Confidence 578899999999997
No 48
>KOG1836|consensus
Probab=69.06 E-value=16 Score=34.54 Aligned_cols=47 Identities=26% Similarity=0.602 Sum_probs=27.7
Q ss_pred eCCCCCcCCCCCCCCcCCCCCCCCCCCCCCCeeeeCC--CCeeeee-CCCCCccC
Q psy13160 95 FCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD--NGFAQCT-CLPGYVES 146 (186)
Q Consensus 95 ~c~~g~~~~~~~~~c~~~~~~C~~~~C~~~~~C~~~~--~~~~~C~-C~~g~~~~ 146 (186)
+|..||.+.+... ....|.+=+|..++.|..+. ... .|. |+++|+|.
T Consensus 760 ~C~~GfYg~~~~~----~~~dC~~C~Cp~~~~~~~~~~~~~~-iCk~Cp~gytG~ 809 (1705)
T KOG1836|consen 760 QCVDGFYGLPDLG----TSGDCQPCPCPNGGACGQTPEILEV-VCKNCPPGYTGL 809 (1705)
T ss_pred hhcCCCCCccccC----CCCCCccCCCCCChhhcCcCcccce-ecCCCCCCCccc
Confidence 4667776663311 11126655677666665444 344 787 99999875
No 49
>KOG3516|consensus
Probab=65.12 E-value=7.9 Score=34.62 Aligned_cols=40 Identities=30% Similarity=0.669 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCeeeecCCCeEeeCC-CCCcCCCCCCCCcCCC
Q psy13160 70 EGDECSPNPCGPYTGCRVVSGSAVCFCL-PEYTGDPPSVPCTLPL 113 (186)
Q Consensus 70 ~~~~C~~~~c~~~~~C~~~~~~~~C~c~-~g~~~~~~~~~c~~~~ 113 (186)
.++.|.+++|.+++.|......|.|.|. .||.|. .|...+
T Consensus 544 i~drClPN~CehgG~C~Qs~~~f~C~C~~TGY~Ga----tCHtsi 584 (1306)
T KOG3516|consen 544 ISDRCLPNPCEHGGKCSQSWDDFECNCELTGYKGA----TCHTSI 584 (1306)
T ss_pred cccccCCccccCCCcccccccceeEeccccccccc----cccCCC
Confidence 5577889999999999987788999998 799888 776433
No 50
>KOG3514|consensus
Probab=65.04 E-value=6.4 Score=34.90 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCeecc-CCCeeEecCCCCCCCCCCCCCCcceeeCCCCCCCCCccC
Q psy13160 16 ACKPNPCDPYSSCSV-YSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMAFP 69 (186)
Q Consensus 16 ~c~~~~C~~~~~C~~-~~~~~C~C~~c~~~~~~C~~~C~~~C~C~~g~~~~~c~~ 69 (186)
.|.++||.++|.|.. .++|.|-|. ..+|.|+.|+.
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs-------------------~T~~~G~~Cer 660 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCS-------------------GTGFEGRTCER 660 (1591)
T ss_pred ccCCCcccCCCCccccccccccccc-------------------cCcccCccccc
Confidence 799999999999999 999999864 24777888863
No 51
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=64.41 E-value=11 Score=24.49 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCCCCCeeeecC--CCeEeeCCCCCcCCCCCCCCc
Q psy13160 78 PCGPYTGCRVVS--GSAVCFCLPEYTGDPPSVPCT 110 (186)
Q Consensus 78 ~c~~~~~C~~~~--~~~~C~c~~g~~~~~~~~~c~ 110 (186)
-|.++ .|.-.. ..+.|.|..||.|. .|+
T Consensus 52 YClHG-~C~yI~dl~~~~CrC~~GYtGe----RCE 81 (139)
T PHA03099 52 YCLHG-DCIHARDIDGMYCRCSHGYTGI----RCQ 81 (139)
T ss_pred EeECC-EEEeeccCCCceeECCCCcccc----ccc
Confidence 36664 787544 67899999999999 997
No 52
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=45.61 E-value=46 Score=17.48 Aligned_cols=22 Identities=41% Similarity=0.892 Sum_probs=15.8
Q ss_pred CCCCCCeeeeCCCCeeeeeCCCCCccC
Q psy13160 120 PCGPNTQCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 120 ~C~~~~~C~~~~~~~~~C~C~~g~~~~ 146 (186)
.|..++.|++. +|+|++||...
T Consensus 27 qC~~~s~C~~g-----~C~C~~g~~~~ 48 (52)
T PF01683_consen 27 QCIGGSVCVNG-----RCQCPPGYVEV 48 (52)
T ss_pred CCCCcCEEcCC-----EeECCCCCEec
Confidence 35566788554 89999998643
No 53
>KOG0196|consensus
Probab=42.92 E-value=40 Score=29.46 Aligned_cols=57 Identities=25% Similarity=0.605 Sum_probs=31.8
Q ss_pred CCCCCeeeeCCCCeeeeeCCCCCccCCCCCCCCccCCCCCCC------------CCCCCCCeecCCCCCeeeCCCCC
Q psy13160 121 CGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEP------------NVCGAGAVCDPNRAPYCFCPEGT 185 (186)
Q Consensus 121 C~~~~~C~~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~C~~------------~~C~~~~~C~~~~~~~C~C~~g~ 185 (186)
|...+......| .|.|.+||.... .+..|+ .|.+ .+|..+..-...++..|.|..||
T Consensus 248 C~~dGeWlvpiG---~C~C~aGye~~~-~~~~C~----aCp~G~yK~~~~~~~C~~CP~~S~s~~ega~~C~C~~gy 316 (996)
T KOG0196|consen 248 CSGDGEWLVPIG---GCVCKAGYEEAE-NGKACQ----ACPPGTYKASQGDSLCLPCPPNSHSSSEGATSCTCENGY 316 (996)
T ss_pred EcCCCcEEEEcC---ceeecCCCCccc-CCCcce----eCCCCcccCCCCCCCCCCCCCCCCCCCCCCCcccccCCc
Confidence 555555555444 799999997521 233442 2321 13433322222367889999997
No 54
>KOG3512|consensus
Probab=36.79 E-value=1.9e+02 Score=23.71 Aligned_cols=11 Identities=36% Similarity=1.071 Sum_probs=7.7
Q ss_pred eee-CCCCCccC
Q psy13160 136 QCT-CLPGYVES 146 (186)
Q Consensus 136 ~C~-C~~g~~~~ 146 (186)
+|. |.+||..+
T Consensus 372 hChyCreGyyRd 383 (592)
T KOG3512|consen 372 HCHYCREGYYRD 383 (592)
T ss_pred ccccccCccccC
Confidence 464 88888755
No 55
>KOG3514|consensus
Probab=33.40 E-value=36 Score=30.67 Aligned_cols=35 Identities=26% Similarity=0.613 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCeeeecCCCeEeeCC-CCCcCCCCCCCCcC
Q psy13160 73 ECSPNPCGPYTGCRVVSGSAVCFCL-PEYTGDPPSVPCTL 111 (186)
Q Consensus 73 ~C~~~~c~~~~~C~~~~~~~~C~c~-~g~~~~~~~~~c~~ 111 (186)
.|.++||.+++.|...-..+.|.|. .+|.|. .|++
T Consensus 625 ~C~~nPC~N~g~C~egwNrfiCDCs~T~~~G~----~Cer 660 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNRFICDCSGTGFEGR----TCER 660 (1591)
T ss_pred ccCCCcccCCCCccccccccccccccCcccCc----cccc
Confidence 5888999999999988888999986 578888 8863
No 56
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=32.88 E-value=40 Score=17.36 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=11.5
Q ss_pred ceeeCCCCCCCCCcc
Q psy13160 54 PECLCNSDCPFNMAF 68 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~ 68 (186)
..|.|..++.|..|+
T Consensus 18 G~C~C~~~~~G~~C~ 32 (46)
T smart00180 18 GQCECKPNVTGRRCD 32 (46)
T ss_pred CEEECCCCCCCCCCC
Confidence 456788888888884
No 57
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=32.13 E-value=49 Score=17.12 Aligned_cols=18 Identities=33% Similarity=0.805 Sum_probs=12.7
Q ss_pred eeeeCCCCeeeeeCCCCCccC
Q psy13160 126 QCSLLDNGFAQCTCLPGYVES 146 (186)
Q Consensus 126 ~C~~~~~~~~~C~C~~g~~~~ 146 (186)
.|....+ .|.|+++|.|.
T Consensus 12 ~C~~~~G---~C~C~~~~~G~ 29 (49)
T PF00053_consen 12 TCDPSTG---QCVCKPGTTGP 29 (49)
T ss_dssp SEEETCE---EESBSTTEEST
T ss_pred cccCCCC---EEeccccccCC
Confidence 4555333 89999999876
No 58
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=30.78 E-value=43 Score=17.53 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.8
Q ss_pred ceeeCCCCCCCCCcc
Q psy13160 54 PECLCNSDCPFNMAF 68 (186)
Q Consensus 54 ~~C~C~~g~~~~~c~ 68 (186)
..|.|..+|.|..|+
T Consensus 19 G~C~C~~~~~G~~C~ 33 (50)
T cd00055 19 GQCECKPNTTGRRCD 33 (50)
T ss_pred CEEeCCCcCCCCCCC
Confidence 457788899998885
No 59
>KOG1836|consensus
Probab=22.98 E-value=2.9e+02 Score=26.89 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=25.8
Q ss_pred eCCCCCCCCCccCCCCCCCCCCCCCCCeeeecC--CCeEee-CCCCCcCC
Q psy13160 57 LCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVS--GSAVCF-CLPEYTGD 103 (186)
Q Consensus 57 ~C~~g~~~~~c~~~~~~C~~~~c~~~~~C~~~~--~~~~C~-c~~g~~~~ 103 (186)
+|..||.|..-....+.|.+=+|...+.|.... ..+.|. |+++|+|.
T Consensus 760 ~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~ 809 (1705)
T KOG1836|consen 760 QCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGL 809 (1705)
T ss_pred hhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCccc
Confidence 577788754321111115544555555554333 455677 88888876
Done!