RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13160
(186 letters)
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 47.4 bits (113), Expect = 6e-07
Identities = 23/108 (21%), Positives = 29/108 (26%), Gaps = 5/108 (4%)
Query: 71 GDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLL 130
G C PC C+ C C P Y G C L N CH L
Sbjct: 5 GSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSN----CELAKNECHPERTDGCQHFCLP 60
Query: 131 DNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPY 178
C+C GY + + + C D P+
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE-KRAPDLQDLPW 107
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 44.6 bits (106), Expect = 2e-06
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPC---GPNTQ 126
+GD+C+ +PC C+ S +CFCLP + G C + G
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRN----CETHKDDQLICVNENGGCEQY 101
Query: 127 CSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCD 172
CS C C GY ++ P CG + +
Sbjct: 102 CSDHTGTKRSCRCHEGY-----SLLADGVSCTPTVEYPCGKIPILE 142
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 44.3 bits (105), Expect = 2e-06
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSL 129
+GD+C PNPC C+ S C+C + G C L + +
Sbjct: 47 DGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKN----CELDATCNIKNGRCKQFCKTG 102
Query: 130 LDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
D+ C+C GY + + +P P CG +V
Sbjct: 103 ADSKV-LCSCTTGY-----RLAPDQKSCKPAVPFPCGRVSVS 138
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 42.4 bits (100), Expect = 2e-05
Identities = 28/137 (20%), Positives = 41/137 (29%), Gaps = 12/137 (8%)
Query: 52 CRPECLCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTL 111
+ F + +GD+C +PC C+ G C CL + G C L
Sbjct: 23 REVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK----NCEL 78
Query: 112 PLN-PCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAV 170
C + C N C+C GY T+ + P P CG +
Sbjct: 79 FTRKLCSLDNGDCDQFCHEEQNSV-VCSCARGY-----TLADNGKACIPTGPYPCGKQTL 132
Query: 171 CDPNRAPY-CFCPEGTM 186
R+ G
Sbjct: 133 ERRKRSVAQATSSSGEA 149
Score = 40.9 bits (96), Expect = 6e-05
Identities = 17/100 (17%), Positives = 22/100 (22%), Gaps = 9/100 (9%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
CS + C S VC C YT P PCG T
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD----NGKACIPTGPYPCGKQTLERRKR 137
Query: 132 NGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
+ Q T G + + +
Sbjct: 138 SVA-QATSSSGEAPDSI----TWKPYDAADLDPTENPFDL 172
Score = 31.3 bits (71), Expect = 0.12
Identities = 10/61 (16%), Positives = 12/61 (19%), Gaps = 3/61 (4%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
P PCG T R A D P + P +
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSSSGEAPDS---ITWKPYDAADLDPTENPFDLLDFN 176
Query: 132 N 132
Sbjct: 177 Q 177
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 40.7 bits (96), Expect = 4e-05
Identities = 38/116 (32%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 72 DECS--PNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSL 129
DECS NPC C GS C CL YTG C + +N C ++PC + C
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR----CEIDVNECVSNPCQNDATCLD 61
Query: 130 LDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC-DPNRAPYCFCPEG 184
F QC C+PGY C C + C C D C CP G
Sbjct: 62 QIGEF-QCICMPGY-----EGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTG 111
Score = 40.3 bits (95), Expect = 6e-05
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
+EC NPC C G C C+P Y G V C + + C +SPC N +C
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICMPGYEG----VHCEVNTDECASSPCLHNGRCLDKI 101
Query: 132 NGFAQCTCLPGY 143
N F QC C G+
Sbjct: 102 NEF-QCECPTGF 112
Score = 29.1 bits (66), Expect = 0.42
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPC 121
DEC+ +PC C C C +TG C + L+ ++
Sbjct: 84 DECASSPCLHNGRCLDKINEFQCECPTGFTGHL----CQVDLHHILDAQK 129
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 39.2 bits (92), Expect = 1e-04
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLN-PCHNSPCGPNTQCS 128
+GD+C +PC C+ G C CL + G C L C + C
Sbjct: 41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK----NCELFTRKLCSLDNGDCDQFCH 96
Query: 129 LLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
N C+C GY T+ + P P CG +
Sbjct: 97 EEQNSV-VCSCARGY-----TLADNGKACIPTGPYPCGKQTLE 133
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 35.5 bits (81), Expect = 0.006
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
+ C+ N G C+++ G+ C C Y C C C+ +
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ--GCTNSE 61
Query: 132 NGFAQCTCLPGYVESPNT 149
F QC C GY P+
Sbjct: 62 GAF-QCWCEAGYELRPDR 78
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 34.6 bits (80), Expect = 0.007
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 9/114 (7%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
+EC C GS +C C P++ +P V C + C + + +
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV----DTRSGNCYLDIRPRGDN 59
Query: 132 NGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPY-CFCPEG 184
C+ G S C C + + C EG
Sbjct: 60 GDT-ACSNEIGVGVSKA---SCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG 109
Score = 30.4 bits (69), Expect = 0.20
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCG-PNTQCSLL 130
+ PC +C + +P +V ++ C P +C
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE-DIDECQELPGLCQGGKCINT 140
Query: 131 DNGFAQCTCLPGYVESPNT 149
F QC C GY + +T
Sbjct: 141 FGSF-QCRCPTGYYLNEDT 158
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 35.2 bits (80), Expect = 0.008
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 4/115 (3%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
+EC N G C + C C + ++ C + P + C L+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR--RCEDIDECQD-PDTCSQLCVNLE 57
Query: 132 NGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPYCFCPEGTM 186
G+ +C C G+ P+T +
Sbjct: 58 GGY-KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNL 111
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 33.9 bits (77), Expect = 0.008
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 72 DECSPNPCGPYTGC-RVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCH--NSPCGPNTQCS 128
+C C R + G+ CL + C C N C P +C+
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEV--GGKCVPASITCEENNGGCAPEAECT 68
Query: 129 LLDNGFAQCTCLPGYVESPNTIRGCVERRQP 159
+ D +C C E C P
Sbjct: 69 MDDKKEVECKCTKEGSEPLFEGVFCSSSSGP 99
Score = 31.6 bits (71), Expect = 0.039
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPN--VCGAGAVC 171
+ C ++ N C +G + CL G+ E CV CE N C A C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGK---CVPASITCEENNGGCAPEAEC 67
Query: 172 --DPNRAPYCFCPEGT 185
D + C C +
Sbjct: 68 TMDDKKEVECKCTKEG 83
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 34.3 bits (79), Expect = 0.008
Identities = 31/130 (23%), Positives = 38/130 (29%), Gaps = 22/130 (16%)
Query: 72 DECSPNPCGPYTGC--RVVSGSAVCFCLPEYTGD--------PPSVPCTLPLNPCHNSPC 121
D C PNPC C + GS C C +T PC +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 122 GPNTQCSLLDNGFA------QCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNR 175
C + + C C G+ C CE C G +C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGF-----NGIHCQHNINECEVEPCKNGGICTDLV 115
Query: 176 APY-CFCPEG 184
A Y C CP
Sbjct: 116 ANYSCECPGE 125
Score = 33.9 bits (78), Expect = 0.009
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 12/90 (13%)
Query: 61 DCPFNMAFPEGDECSPNPC-------GPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPL 113
C+PNPC VC C + G C +
Sbjct: 42 VASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI----HCQHNI 97
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGY 143
N C PC C+ L + C C +
Sbjct: 98 NECEVEPCKNGGICTDLVANY-SCECPGEF 126
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 35.4 bits (81), Expect = 0.009
Identities = 28/107 (26%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 72 DECSPNPCGPYTGCR-VVSGSAVC-FCLPEYTGDPPSVP----CTLPLNPCHNSPCGPNT 125
D C NPC P C GS C FC + G+ C L + C
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICF--STSKVP 61
Query: 126 QCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCD 172
+C GF C P Y N G E VC C
Sbjct: 62 RCVNTQPGFHCLPCPPRY--RGNQPVGVGLEAAKTEKQVCEPENPCK 106
Score = 26.5 bits (58), Expect = 6.6
Identities = 33/146 (22%), Positives = 41/146 (28%), Gaps = 31/146 (21%)
Query: 17 CKPNPCDPYSSCSVYSEHVAMCDPCSGPQAPWLPHCRP--ECLCNSDCPFNMAFPEGDEC 74
C NPC P + CS + + C C HC EC D F
Sbjct: 6 CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICF---------- 55
Query: 75 SPNPCGPYTGCRVVSGSAVCF-CLPEYTGDPPSVPCTL----------PLNPCH--NSPC 121
C C C P Y G+ P P NPC C
Sbjct: 56 ---STSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNC 112
Query: 122 GPNTQCSLLD---NGFAQCTCLPGYV 144
+ +C L + +C C GY
Sbjct: 113 HKHAECIYLGHFSDPMYKCECQTGYA 138
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 33.5 bits (77), Expect = 0.010
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 112 PLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
P++PC + C QC LD C C G+ P+ C N A C
Sbjct: 3 PVDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPHEPHRC-----QMFCNQTACPADC 55
Query: 172 DPNRAPYCFCPEG 184
DPN C CPEG
Sbjct: 56 DPNTQASCECPEG 68
Score = 25.4 bits (56), Expect = 7.1
Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
D C C Y + S +C C + P + C
Sbjct: 5 DPCFRANCE-YQCQPLDQTSYLCVCAEGFAPIPHEPHR----CQMFCNQTACPADCDP-- 57
Query: 132 NGFAQCTCLPGYV 144
N A C C GY+
Sbjct: 58 NTQASCECPEGYI 70
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 32.0 bits (72), Expect = 0.026
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVE-----SPNTIRGCVERRQPCEPN-VCGA 167
+ C C N+ C + +C CL Y + N C E C+ + C
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 168 GAVCDPNRAPYCFCPEGT 185
+ C C +
Sbjct: 65 EDSGSNGKKITCECTKPD 82
Score = 26.3 bits (57), Expect = 3.7
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 72 DECSPNPCGPYTGC-RVVSGSAVCFCLPEYTGDPPS-VPCTLPLNPCHNSPCGPNTQCSL 129
+C C +GC R + C CL Y + V P +N C + +C+
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 130 LDNGFAQ----CTCLPGY 143
D+G C C
Sbjct: 65 EDSGSNGKKITCECTKPD 82
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.6 bits (71), Expect = 0.042
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 72 DECSPNPCGPYTGC-RVVSGSAVCFCLPEYTGDPPS-VPCTLPLNPCHNSPCGPNTQCSL 129
C C R + G+ CL + D VP N C P +C +
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKM 64
Query: 130 LDNGFAQCTCLPGY 143
D C C
Sbjct: 65 NDKNEIVCKCTKEG 78
Score = 29.6 bits (66), Expect = 0.17
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVE-----SPNTIRGCVERRQPCEPN 163
+ C ++ N C +G + CL + E P C ++ C P
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPE 59
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 31.2 bits (71), Expect = 0.066
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 71 GDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNP--CHNSPCGPNTQCS 128
+ + C + C GS C C + G C ++ C G C
Sbjct: 14 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR----FCQREVSFLNCSLDNGGCTHYCL 69
Query: 129 LLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVC 171
+C+C PGY + + + P CG
Sbjct: 70 EEVGWR-RCSCAPGY-----KLGDDLLQCHPAVKFPCGRPWKR 106
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 30.2 bits (69), Expect = 0.080
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLD 131
DEC + C GS C C Y C + C N C +
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE--CV-DTDECSVGNPCGNGTCKNVI 62
Query: 132 NGFAQCTCLPGYVESPNT 149
GF +CTC G+ P
Sbjct: 63 GGF-ECTCEEGFEPGPMM 79
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.5 bits (71), Expect = 0.12
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 141 PGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPY-CFCPEG 184
+ RGC C+ + C VC + C C
Sbjct: 169 DALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMT 213
Score = 30.4 bits (68), Expect = 0.37
Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 109 CTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPN 148
C P C C C +GF C C P
Sbjct: 181 CEGPSTTCQEDSCSNQGVCLQQWDGF-SCDCSMTSFSGPL 219
Score = 26.5 bits (58), Expect = 5.6
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFC-LPEYTGDPPSVPCTLPLNPCHNSPC 121
C + C C C C + ++G + P T +
Sbjct: 186 TTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQI 236
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 31.4 bits (70), Expect = 0.17
Identities = 16/88 (18%), Positives = 21/88 (23%), Gaps = 5/88 (5%)
Query: 41 CSGPQAPWLPHCRPECLCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFC-LPE 99
S P + G+E C C VV AVC C
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTG 219
Query: 100 YTGDPPSVPCTLPLNPCHNSPCGPNTQC 127
+ G C+ + G C
Sbjct: 220 FRGK----DCSQGKEEYIATFKGSEYFC 243
Score = 31.4 bits (70), Expect = 0.20
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 141 PGYVESPNTIRGCVERRQPCEPNVCGAGAVC-DPNRAPYCFCPEG 184
+ RGC C+ + C VC C C
Sbjct: 1001 DALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMT 1045
Score = 29.8 bits (66), Expect = 0.66
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 7/92 (7%)
Query: 84 GCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTC-LPG 142
+ + L + + C CS++D+ C C G
Sbjct: 161 SSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQA-VCDCSRTG 219
Query: 143 YVESPNTIRGCVERRQPCEPNVCGAGAVCDPN 174
+ + C + ++ G+ C
Sbjct: 220 F-----RGKDCSQGKEEYIATFKGSEYFCYDL 246
Score = 27.9 bits (61), Expect = 2.7
Identities = 10/48 (20%), Positives = 12/48 (25%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNS 119
C NPC CR VC C L+ +
Sbjct: 620 KPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSM 667
Score = 27.1 bits (59), Expect = 4.6
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 5/81 (6%)
Query: 104 PPSVPCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPN 163
SV P ++ +D+G + P + E + E
Sbjct: 141 LASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGS----PCEAGEEGEGG 196
Query: 164 VCGAGAVC-DPNRAPYCFCPE 183
VC G VC + C C
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSR 217
Score = 26.3 bits (57), Expect = 7.2
Identities = 10/40 (25%), Positives = 11/40 (27%), Gaps = 1/40 (2%)
Query: 109 CTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPN 148
C P C C C +GF C C P
Sbjct: 1013 CEGPSTTCQEDSCSNQGVCLQQWDGF-SCDCSMTSFSGPL 1051
Score = 26.3 bits (57), Expect = 8.4
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 108 PCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPN 148
PC ++PC N C N + C C +
Sbjct: 614 CSRETAKPCLSNPCKNNGMCRDGWNRY-VCDCSGTGYLGRS 653
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 29.9 bits (68), Expect = 0.49
Identities = 3/15 (20%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
+ G R+ + S + +
Sbjct: 135 AFIGPRIEA-SVLSY 148
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 28.6 bits (64), Expect = 0.66
Identities = 27/131 (20%), Positives = 39/131 (29%), Gaps = 25/131 (19%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPC---------HNSPCG 122
C+ C + C + C C P ++ S T P+ C CG
Sbjct: 3 RGCA-RWCPQDSSCV---NATACRCNPGFSSF--SEIITTPMETCDDINECATLSKVSCG 56
Query: 123 PNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCE--------PNVCGAGAVCDPN 174
+ C + + C C PGY E C+ + C + VC
Sbjct: 57 KFSDCWNTEGSY-DCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNT 115
Query: 175 RAPY-CFCPEG 184
Y C C G
Sbjct: 116 VGSYSCRCRPG 126
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 29.0 bits (64), Expect = 0.78
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Query: 70 EGDECSPN--PCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQC 127
C+ N C + CR + C C+ YTG+ + G
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 128 SLLDNGFAQCTCLPGYVESPNTI 150
S + T L YV +
Sbjct: 64 SSQVPVVFENTDLHSYVVMNHGR 86
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 28.8 bits (63), Expect = 0.89
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 112 PLNPCHNSPCGPNTQCSLLDNGFAQCTC 139
PL PC N C C L +N C C
Sbjct: 2 PLAPCQNHHCKHGKVCELDENNTPMCVC 29
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 29.0 bits (64), Expect = 1.1
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 105 PSVPCTLPLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCE 161
+PC G + C + +G +C+C V + C +
Sbjct: 571 ELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDE-LSCGGTKHHHH 626
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella
burnetii}
Length = 372
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
PY G V SAVC
Sbjct: 126 PYVGANVQ-SSAVCM 139
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.1 bits (60), Expect = 1.4
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 89 SGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQC-SLLDNGFAQCTCLPGY 143
+ C+C ++P+ C C C L C C G+
Sbjct: 29 NRVEYCWCNSGRAQ-----CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF 79
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
PY G + G AV F
Sbjct: 121 PYVGAPLR-GHAVSF 134
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 26.4 bits (58), Expect = 1.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 113 LNPCHNSPCGPNTQCSLLDNGFAQCTCLP 141
+ C N CGP +C + +C C P
Sbjct: 1 METCENVDCGPGKKCRMNKKNKPRCVCAP 29
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 27.9 bits (63), Expect = 1.9
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
PY GC + SA+C
Sbjct: 118 PYVGCDIQ-SSALCM 131
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 27.9 bits (63), Expect = 2.0
Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
P+ GC + S SA+C
Sbjct: 118 PFVGCDIQS-SAICM 131
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 27.6 bits (62), Expect = 2.3
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
PY G V+S +A
Sbjct: 115 PYVGNGVLS-AASSM 128
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 27.0 bits (60), Expect = 2.3
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
C+ C + C + C C P ++G
Sbjct: 118 YTAACTNTSCSGHGECVETINNYTCKCDPGFSGL 151
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 27.3 bits (59), Expect = 2.5
Identities = 20/118 (16%), Positives = 28/118 (23%), Gaps = 3/118 (2%)
Query: 69 PEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQCS 128
G C C C+ YT + + +
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYL 110
Query: 129 LLDNGFAQCTCLPGYVESPNTIRGCVERRQ-PCEPNVCGAGAVCDPNRAPY-CFCPEG 184
C+C G V +P C + C+ VC Y C C EG
Sbjct: 111 SEIQSA-GCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEG 167
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/122 (13%), Positives = 27/122 (22%), Gaps = 8/122 (6%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSV-------PCTLPLNPCHNSPCG 122
E + + +S C C + C
Sbjct: 3 EASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQC 62
Query: 123 PNTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPYCFCP 182
N + C C+ GY +T V + C + ++ C C
Sbjct: 63 IENPDPAQVNMY-XCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCA 121
Query: 183 EG 184
G
Sbjct: 122 IG 123
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 27.5 bits (61), Expect = 2.6
Identities = 12/121 (9%), Positives = 23/121 (19%), Gaps = 23/121 (19%)
Query: 21 PCDPYSSCSVYS-EHVAMCD--------PCSGPQA----PWLPHCRPECLCNSDCPFNMA 67
PC ++S + + C P W
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCE 94
Query: 68 FPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQC 127
+E R + G+ + +P + + CG
Sbjct: 95 EAVEEET--GDGLDEDSDRAIEGA-TATSEYQTFFNPATFGSG-------EADCGLRPLF 144
Query: 128 S 128
Sbjct: 145 E 145
Score = 27.1 bits (60), Expect = 4.0
Identities = 11/116 (9%), Positives = 22/116 (18%), Gaps = 12/116 (10%)
Query: 64 FNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGP 123
+ F + N C G V ++ + +
Sbjct: 49 KHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDED 108
Query: 124 NTQCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPYC 179
+ + A T +P T CG + +
Sbjct: 109 SDRAI----EGATATSEYQTFFNPATF--------GSGEADCGLRPLFEKKSLEDK 152
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP
binding protein, csgid, A binding, cell shape; HET: ADP;
2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Length = 364
Score = 27.2 bits (61), Expect = 3.0
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
P+ G V+ SA C
Sbjct: 126 PFVGSDVL-SSAACM 139
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas
oryzae PV} PDB: 3r5f_A* 3rfc_A*
Length = 386
Score = 27.2 bits (61), Expect = 3.3
Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 81 PYTGCRVVSGSAVC 94
P+ G V+ GSAV
Sbjct: 145 PFVGSGVL-GSAVA 157
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 27.2 bits (61), Expect = 3.6
Identities = 5/14 (35%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 81 PYTGCRVVSGSAVC 94
PY G ++ S+V
Sbjct: 147 PYVGTNIL-SSSVA 159
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 27.1 bits (59), Expect = 4.0
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 114 NPCHNSPCGPNTQCS---LLDNGFAQCTCLPGYVESPNTIRGCV 154
N N CS L +C C G+ + + C+
Sbjct: 575 VIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDM-KTCI 617
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 26.8 bits (60), Expect = 4.6
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 81 PYTGCRVVSGSAVC 94
PY G V SA+C
Sbjct: 104 PYVGAGVA-ASALC 116
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 26.8 bits (60), Expect = 4.7
Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 81 PYTGCRVVSGSAVC 94
PY G V+ SAV
Sbjct: 137 PYVGAGVL-ASAVG 149
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 26.2 bits (58), Expect = 5.0
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPC-HNSPCGPNTQCSLL 130
D+C P+P + C C C + G C LN C + PC CS
Sbjct: 97 DKCIPHPGCVHGICN---EPWQCLCETNWGGQL----CDKDLNYCGTHQPCLNGGTCSNT 149
Query: 131 DNGFAQCTCLPGY 143
QC+C GY
Sbjct: 150 GPDKYQCSCPEGY 162
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 26.3 bits (58), Expect = 5.4
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 74 CSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
C C C G+ C C P + G
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGP 151
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 26.3 bits (57), Expect = 7.7
Identities = 23/121 (19%), Positives = 29/121 (23%), Gaps = 16/121 (13%)
Query: 67 AFPEGDECSPNPCGPY-TGCRVVSGSAVCFCLPEYTGDPPSVPCTLPLNPCHNSPCGPNT 125
A + C + T C + C C TG C P P +
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPD----CGKCKKNYQGRPWSPGS 342
Query: 126 QCSLLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCGAGAVCDPNRAPYCFCPEGT 185
+ G A C+P E C G C N C CP
Sbjct: 343 -YLPIPKGAA-NACIPSI-------SSIGTNVCDNELLHCQNGGTCHNNV--RCLCPAAY 391
Query: 186 M 186
Sbjct: 392 T 392
>1ha4_A Gamma crystallin S; eye lens protein, gammas crystallin; 2.4A {Homo
sapiens} SCOP: b.11.1.1 PDB: 1a7h_A
Length = 87
Score = 24.9 bits (55), Expect = 8.1
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 58 CNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTG 102
DCP M E C+V+ G + + LP Y G
Sbjct: 20 TTEDCPSIMEQFHMREIH--------SCKVLEGVWIFYELPNYRG 56
>3qk3_A Beta-crystallin B3; crybb3, beta B3, cataract, eye lens protein,
STR genomics, structural genomics consortium, SGC,
structural P; 1.95A {Homo sapiens}
Length = 184
Score = 25.9 bits (57), Expect = 8.1
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 53 RPECLCNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTG 102
R + + D P A D + R ++G+ V + P Y G
Sbjct: 112 RKMEIVDDDVPSLWAHGFQDRVA--------SVRAINGTWVGYEFPGYRG 153
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 26.0 bits (57), Expect = 8.9
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 98 PEYTGDPPSVPCTLPLNPCHN---SPCGPNTQCSLLDNGFAQCTCLPGY 143
P P + C + S C + C L +G C C G+
Sbjct: 5 PGVPTSP-VWWNS-AQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGW 51
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 26.0 bits (56), Expect = 9.0
Identities = 26/163 (15%), Positives = 43/163 (26%), Gaps = 24/163 (14%)
Query: 19 PNPCDPYSSCSVYSEHVAMCDPCSGPQAPWLPHCRPECLCNSDCPFNMAFPEGDECSPNP 78
P ++C + + C HC+ +C + C + EG C
Sbjct: 160 PGTAKGKTNCPATVINGQFVERCWTHS-----HCQ--KVCPTICKSHGCTAEGLCCHSEC 212
Query: 79 CGPYTGCRVVSGSAVCF-----------CLPEYTGDPPSVPCTLPLNPCHNSPCGPNTQC 127
G + + C C P Y + C + +
Sbjct: 213 LGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQ 272
Query: 128 S----LLDNGFAQCTCLPGYVESPNTIRGCVERRQPCEPNVCG 166
++ N C GY + + C PC P VC
Sbjct: 273 GCHQYVIHNNKCIPECPSGYTMNSSN-LLCTPCLGPC-PKVCH 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.522
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,904,235
Number of extensions: 168895
Number of successful extensions: 1166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 807
Number of HSP's successfully gapped: 367
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)