RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13160
(186 letters)
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 26.6 bits (59), Expect = 0.25
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 70 EGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
+GD+C NPC C+ S C+C + G
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35
Score = 24.6 bits (54), Expect = 1.2
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGY 143
+ C ++PC C N + +C C G+
Sbjct: 4 DQCESNPCLNGGSCKDDINSY-ECWCPFGF 32
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 26.6 bits (59), Expect = 0.30
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
+EC NPC C G C C+P Y G
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33
Score = 24.6 bits (54), Expect = 1.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGY 143
N C ++PC + C F QC C+PGY
Sbjct: 2 NECVSNPCQNDATCLDQIGEF-QCICMPGY 30
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 26.2 bits (58), Expect = 0.39
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 71 GDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
GD+C+ +PC C+ S +CFCLP + G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 34
Score = 23.9 bits (52), Expect = 2.8
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGY 143
+ C +SPC C + C CLP +
Sbjct: 3 DQCASSPCQNGGSCKDQLQSY-ICFCLPAF 31
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.8 bits (57), Expect = 0.46
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
D+C +PC C+ G C CL + G
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 32
Score = 23.9 bits (52), Expect = 2.6
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGY 143
+ C SPC +C + CTCL G+
Sbjct: 1 DQCETSPCQNQGKCKDGLGEY-TCTCLEGF 29
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId:
1423]}
Length = 440
Score = 28.5 bits (63), Expect = 0.56
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 67 AFPEGDECSPNPCGPYTGCRVVSGSAV 93
F + D+ N + SGSA
Sbjct: 109 VFKDSDKFDANDSILKDQTQEWSGSAT 135
>d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA,
N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 132
Score = 27.0 bits (59), Expect = 0.78
Identities = 6/15 (40%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 81 PYTGCRVVSGSAVCF 95
PY G + AV F
Sbjct: 119 PYVGAPLRG-HAVSF 132
>d1h4ax2 b.11.1.1 (X:87-174) gamma-Crystallin {Human (Homo sapiens),
isoform D [TaxId: 9606]}
Length = 88
Score = 25.9 bits (57), Expect = 1.2
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 9/56 (16%)
Query: 50 PHCRPECL-CNSDCPFNMAFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDP 104
R + + DC +E V+ GS V + L Y G
Sbjct: 10 EDYRGQMIEFTEDCSCLQDRFRFNEIHS--------LNVLEGSWVLYELSNYRGRQ 57
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.6 bits (54), Expect = 1.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
DEC+ +PC C C C +TG
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFTGH 32
Score = 23.1 bits (50), Expect = 4.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 114 NPCHNSPCGPNTQCSLLDNGFAQCTCLPGY 143
+ C +SPC N +C N F QC C G+
Sbjct: 1 DECASSPCLHNGRCLDKINEF-QCECPTGF 29
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 24.4 bits (53), Expect = 1.9
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 67 AFPEGDECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
P C+ CG T C GS C C + G
Sbjct: 4 VLPLEHPCASLCCGHGT-CIDGIGSFSCDCRSGWEGR 39
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 24.3 bits (53), Expect = 2.2
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
DEC + C GS C C Y
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPFGYILA 37
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 24.1 bits (52), Expect = 2.3
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGDPPSVPCT 110
+EC C GS +C C P++ +P V C
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV 42
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 23.2 bits (50), Expect = 4.3
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
C+ C + C + C C P ++G
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFSGL 33
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 23.2 bits (50), Expect = 4.3
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 112 PLNPCHNSPCGPNTQCSLLDNGFAQCTCLPGYVESPN 148
P+NPC PC C QC C PN
Sbjct: 1 PVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPN 37
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.2 bits (50), Expect = 4.5
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 72 DECS--PNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
DECS NPC C GS C CL YTG
Sbjct: 4 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 23.2 bits (50), Expect = 4.6
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 72 DECSPNPCGPYTGCRVVSGSAVCFCLPEYTGD 103
C C C G+ C C P + G
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 33
>d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B
{Streptococcus pyogenes [TaxId: 1314]}
Length = 335
Score = 25.0 bits (54), Expect = 7.2
Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 10/60 (16%)
Query: 39 DPCSGPQAPWLPHCRPECLCNSDCPFNMAFPEGDECSPNPCG-----PYTGCRVVSGSAV 93
P N P+N+ P ++ P TG + + +
Sbjct: 83 QPVVKSLLDSKG-----IHYNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQI 137
>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 251
Score = 24.5 bits (53), Expect = 8.2
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 81 PYTGCRVVSGSAVCFCLPEYTGDPP 105
++ R +G + P T P
Sbjct: 26 THSVIRSGNGVGLGPNRPFETRMPM 50
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.522
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 778,826
Number of extensions: 41002
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 142
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)