BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13164
         (193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           Y C  C K + HK     H   H G+R Y C +C K++  K +L  H KIH GI+ Y+CN
Sbjct: 11  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69

Query: 166 LCSKEFLRKDILIEH 180
           +C+K F+ +D    H
Sbjct: 70  ICAKRFMWRDSFHRH 84



 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
           Y C  C K + HK     H  +H G+R Y C +C K+F  K  L+ H KIH GI+ ++C+
Sbjct: 11  YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69

Query: 193 L 193
           +
Sbjct: 70  I 70



 Score = 36.2 bits (82), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 102 LHRGIR-YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYF 145
           +H G+R Y C +C K++  K  L  H K H GI+ Y+C++C+K + 
Sbjct: 31  MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           YKC  C K +    +L +H++ H G + YKC  C K +     L  H++ H G + YKC 
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64

Query: 166 LCSKEFLRKDILIEHKKIHQ 185
            C K F R D L  H++ HQ
Sbjct: 65  ECGKSFSRSDHLSRHQRTHQ 84



 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKC 191
           YKC  C K +     L  H++ H G + YKC  C K F +   L +H++ H G + +KC
Sbjct: 5   YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           Y C  C K +     L EH++ H G + YKC  C K +  K  LT H++ H G + YKC 
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81

Query: 166 LCSKEFLRKDILIEHKKIHQG 186
            C K F ++  L  H++ H G
Sbjct: 82  ECGKSFSQRANLRAHQRTHTG 102



 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           YKC  C K +  K  LT H++ H G + YKC  C K +  +  L  H++ H G + Y C 
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109

Query: 166 LCSKEFLRKDILIEHKKIHQGIR-FKC 191
            C K F +   L  H++ H G + +KC
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKC 136



 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           Y C  C K +     L  H++ H G + YKC  C K +  +  L  H++ H G + YKC 
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165

Query: 166 LCSKEFLRKDILIEHKKIHQG 186
            C K F R+D L  H++ H G
Sbjct: 166 ECGKSFSRRDALNVHQRTHTG 186



 Score = 31.2 bits (69), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR-FKC 191
           Y C  C K F R D L EH++ H G + +KC
Sbjct: 22  YACPECGKSFSRSDHLAEHQRTHTGEKPYKC 52


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 134 RYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
           RYKCD C K + H   L+ H++ H G + YKC+ C K F+++  LI H ++H G
Sbjct: 18  RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71



 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
           RYKCD C K + H   L++H++ H G + YKCD C K +  + +L  H ++H G
Sbjct: 18  RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCD C   + +KG L  HK +H G + Y+CN+C  +F R   L  H +IH G
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70



 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKCD C   + +KG+L  HK  H G + Y+C++C  ++     L  H +IH G
Sbjct: 18  YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +   GSLT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +   G LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +     LT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +     LT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 38.5 bits (88), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y+CD   C + +     L  H++RH G++ ++C  C +++    +L  H + H G + + 
Sbjct: 37  YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96

Query: 164 CNL--CSKEFLRKDILIEHKKIH 184
           C    C K+F R D L+ H  +H
Sbjct: 97  CRWPSCQKKFARSDELVRHHNMH 119



 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 113 CSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCS 168
           C+K YF    L  H ++H G + Y+CD   C + +     L  H++ H G++ ++C  C 
Sbjct: 14  CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73

Query: 169 KEFLRKDILIEHKKIHQG 186
           ++F R D L  H + H G
Sbjct: 74  RKFSRSDHLKTHTRTHTG 91


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +    +LT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 38.5 bits (88), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           + C +C K +    +L+ H   H   R Y C  C K +  K  +  H  IH G + +KC 
Sbjct: 2   FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61

Query: 166 LCSKEFLRKDILIEHKKIHQG 186
           +C K F +   LI H + H G
Sbjct: 62  VCGKAFSQSSNLITHSRKHTG 82


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +     LT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 64  CDICGRKFARSDERKRHTKIH 84



 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 4   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63

Query: 191 CDL 193
           CD+
Sbjct: 64  CDI 66


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +     LT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 38.1 bits (87), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +     LT H + H G + ++C +C + +    +LT H + H G + + 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F R D    H KIH
Sbjct: 65  CDICGRKFARSDERKRHTKIH 85



 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR----YKCDLCSKEYFHKGYLTDHKKIHQG-IRY 162
           ++C  C K YF K +L EH+ R+   R    + C +C + +  +  L  H   H G + Y
Sbjct: 36  FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95

Query: 163 KCNLCSKEFLRKDILIEHK-KIHQG 186
           KC+ CS++F++K  L  H  K+H G
Sbjct: 96  KCSSCSQQFMQKKDLQSHMIKLHSG 120



 Score = 36.2 bits (82), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 110 CDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR----YKC 164
           C  C K++  K  L  H ++H G + ++C  C K YF K  L +H+  +   R    + C
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69

Query: 165 NLCSKEFLRKDILIEHKKIHQG-IRFKCD 192
           ++C + F R+  L  H   H G + +KC 
Sbjct: 70  SVCQETFRRRMELRLHMVSHTGEMPYKCS 98


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           + C  C + +    +L  H++ H   R Y CD+C K +  + +L DH+ IH   + +KC 
Sbjct: 18  FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77

Query: 166 LCSKEFLRKDILIEHKKIH 184
            C K F +   L  HK +H
Sbjct: 78  ECGKGFCQSRTLAVHKTLH 96


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEH-KKIHQG 186
           + C++C++ +  + +L  H + H   + Y C LC++ F R+D+LI H +KIH G
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56



 Score = 30.0 bits (66), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDH-KKIHQG 159
           + C++C++ +  +  L  H + H   + Y C LC++ +  +  L  H +KIH G
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +  K +L  H + H G + ++C +C + +  +  L  H + H G + + 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F        H KIH
Sbjct: 65  CDICGRKFATLHTRTRHTKIH 85



 Score = 33.9 bits (76), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +  K  L  H +IH G + ++C +C + F ++  L  H + H G + F 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIH 184
           Y C  C K +     L  H+++H G + YKC  C K F +   LI H++IH
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65



 Score = 33.9 bits (76), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIH 157
           Y C  C K +     L +H++ H G + YKC  C K +     L +H++IH
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65



 Score = 31.6 bits (70), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR-FKC 191
           Y C  C K F R  IL++H+++H G + +KC
Sbjct: 15  YGCVECGKAFSRSSILVQHQRVHTGEKPYKC 45


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
           +KC++C K +  K  L  H + H G++ YKC  C         L  H +IH   R +KC 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 166 LCSKEFLRKDILIEHKKIHQG 186
           +C         L  H + H G
Sbjct: 69  ICPYASRNSSQLTVHLRSHTG 89



 Score = 35.8 bits (81), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
           +KC++C K +  K  L  H + H G++ YKC  C         L +H +IH   R FKC 
Sbjct: 9   HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68

Query: 193 L 193
           +
Sbjct: 69  I 69


>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score = 38.9 bits (89), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 113 CSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCS 168
           C+K Y     L  H + H G + YKC    C   +     LT H + H G + ++C +C+
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82

Query: 169 KEFLRKDILIEHKKIHQ 185
           + F R D L  H K HQ
Sbjct: 83  RSFSRSDHLALHMKRHQ 99



 Score = 32.0 bits (71), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 140 CSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR-FKCDL 193
           C+K Y    +L  H + H G + YKC    C   F R D L  H + H G + F+C +
Sbjct: 23  CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
           An Extension To The Rules For Zinc-FingerDNA RECOGNITION
          Length = 66

 Score = 37.7 bits (86), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 135 YKCDLCSKEYFH-----KGYLTDHKKIHQGIRYKCNLCSKEFLRKDILIEHKKI 183
           Y+C +CS+ Y H     + Y+T HK+      Y C  C KEF RKD +  H KI
Sbjct: 11  YRCKVCSRVYTHISNFCRHYVTSHKR--NVKVYPCPFCFKEFTRKDNMTAHVKI 62


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 37.0 bits (84), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 110 CDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGI---RYKCN 165
           C++C K +     L  HK  H G + Y C +C   +  K  ++ H + H G     Y C 
Sbjct: 10  CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69

Query: 166 LCSKEFLRKDILIEH-KKIHQG 186
            C K F R D L  H K++H G
Sbjct: 70  SCGKGFSRPDHLNGHIKQVHSG 91



 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 99  NKILHRGIR-YKCDLCSKEYFHKGSLTEHKKRHQGI---RYKCDLCSKEYFHKGYLTDH- 153
           +K+ H G + Y C +C   +  K  ++ H + H G     Y C  C K +    +L  H 
Sbjct: 26  HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85

Query: 154 KKIHQG 159
           K++H G
Sbjct: 86  KQVHSG 91


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 36.2 bits (82), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
           Y C +  C + +  K +L  H + H G + ++C +C + +     L  H + H G + + 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64

Query: 164 CNLCSKEFLRKDILIEHKKIH 184
           C++C ++F        H KIH
Sbjct: 65  CDICGRKFATLHTRDRHTKIH 85



 Score = 33.1 bits (74), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FK 190
           Y C +  C + +  K  L  H +IH G + ++C +C + F +   L +H + H G + F 
Sbjct: 5   YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64

Query: 191 CDL 193
           CD+
Sbjct: 65  CDI 67


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score = 35.8 bits (81), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 104 RGIRYKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQ 158
           R   + CD   C K Y     L  H + H G + Y CD   C  ++     LT H + H 
Sbjct: 3   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62

Query: 159 GIR-YKCNLCSKEFLRKDILIEHKKIH 184
           G R ++C  C + F R D L  H K H
Sbjct: 63  GHRPFQCQKCDRAFSRSDHLALHMKRH 89



 Score = 30.4 bits (67), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR- 188
           + CD   C K Y    +L  H + H G + Y C+   C  +F R D L  H + H G R 
Sbjct: 7   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66

Query: 189 FKC 191
           F+C
Sbjct: 67  FQC 69


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score = 35.8 bits (81), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 104 RGIRYKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQ 158
           R   + CD   C K Y     L  H + H G + Y CD   C  ++     LT H + H 
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 159 GIR-YKCNLCSKEFLRKDILIEHKKIH 184
           G R ++C  C + F R D L  H K H
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88



 Score = 30.4 bits (67), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR- 188
           + CD   C K Y    +L  H + H G + Y C+   C  +F R D L  H + H G R 
Sbjct: 6   HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65

Query: 189 FKC 191
           F+C
Sbjct: 66  FQC 68


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 34.7 bits (78), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 106 IRYKCDLCSKEYFHKGSLTEHKKRHQG-IRYKCDLCSKEYFHKGYLTDHKKIHQG-IRYK 163
           + Y C +C + Y    SL  H   H    +Y C  C K +    Y T H+  H G  RY+
Sbjct: 21  VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80

Query: 164 CNLCSKEFLRKDILIEHKK 182
           C  C K F+    +  H K
Sbjct: 81  CLACGKSFINYQFMSSHIK 99


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 34.7 bits (78), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 17/26 (65%)

Query: 161 RYKCNLCSKEFLRKDILIEHKKIHQG 186
           RYKCN C K F R   L +H+KIH G
Sbjct: 12  RYKCNECGKVFSRNSQLSQHQKIHTG 37



 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 134 RYKCDLCSKEYFHKGYLTDHKKIHQG 159
           RYKC+ C K +     L+ H+KIH G
Sbjct: 12  RYKCNECGKVFSRNSQLSQHQKIHTG 37



 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQG 132
           RYKC+ C K +     L++H+K H G
Sbjct: 12  RYKCNECGKVFSRNSQLSQHQKIHTG 37


>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 44

 Score = 33.9 bits (76), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGI 187
           Y+CN C K F+ K +LI H++ H G+
Sbjct: 13  YECNECGKAFIWKSLLIVHERTHAGV 38



 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGI 160
           Y+C+ C K +  K  L  H++ H G+
Sbjct: 13  YECNECGKAFIWKSLLIVHERTHAGV 38


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 33.9 bits (76), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F RKD LI H++ H G
Sbjct: 11  YECSECGKAFNRKDQLISHQRTHAG 35


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.9 bits (76), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           Y CN C K F  K  LI HK +H G++
Sbjct: 11  YSCNECGKAFTFKSQLIVHKGVHTGVK 37



 Score = 27.7 bits (60), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           Y C+ C K +  K  L  HK +H G++
Sbjct: 11  YSCNECGKAFTFKSQLIVHKGVHTGVK 37


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 33.9 bits (76), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKI 183
           ++C +C + +    +LT H + H G + + C++C ++F R D    H+ I
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53



 Score = 30.0 bits (66), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIRY 162
           ++C +C + +     LT H + H G + + CD+C +++      +D +K H+ I++
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR----SDERKRHRDIQH 55



 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCDL 193
           ++C +C + F R D L  H + H G + F CD+
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI 36


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 33.5 bits (75), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F RK  LI H++IH G
Sbjct: 13  YECSECGKAFARKSTLIMHQRIHTG 37


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score = 33.5 bits (75), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIH 184
           Y C +  C + +     LT H +IH G + ++C +C + F R D L  H + H
Sbjct: 20  YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72


>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
           Insights Into Adr1-Uas1 Protein-Dna Recognition
          Length = 30

 Score = 33.5 bits (75), Expect = 0.086,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 162 YKCNLCSKEFLRKDILIEH-KKIHQG 186
           Y C LC++ F R+D+LI H +KIH G
Sbjct: 3   YACGLCNRAFTRRDLLIRHAQKIHSG 28


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
           From Human Krueppel-Like Factor 10
          Length = 72

 Score = 33.1 bits (74), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 140 CSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKDILIEHKKIH 184
           C K YF   +L  H + H G + + C+   C + F R D L  H++ H
Sbjct: 25  CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 32.7 bits (73), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y+CD+C K + H  SLT+H++ H G
Sbjct: 13  YECDVCRKAFSHHASLTQHQRVHSG 37



 Score = 32.7 bits (73), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+CD+C K + H   LT H+++H G
Sbjct: 13  YECDVCRKAFSHHASLTQHQRVHSG 37



 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C++C K F     L +H+++H G
Sbjct: 13  YECDVCRKAFSHHASLTQHQRVHSG 37


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.3 bits (72), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y CN C K+F  K  LI H++IH G
Sbjct: 11  YGCNECGKDFSSKSYLIVHQRIHTG 35



 Score = 28.9 bits (63), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y C+ C K++  K YL  H++IH G
Sbjct: 11  YGCNECGKDFSSKSYLIVHQRIHTG 35


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 32.0 bits (71), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           +KCN C K F++   LI+H++IH G
Sbjct: 13  HKCNECGKSFIQSAHLIQHQRIHTG 37



 Score = 27.7 bits (60), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           +KC+ C K +    +L  H++IH G
Sbjct: 13  HKCNECGKSFIQSAHLIQHQRIHTG 37


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.0 bits (71), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           YKCN C K F +   L  H++IH G++
Sbjct: 13  YKCNECGKVFTQNSHLANHQRIHTGVK 39



 Score = 30.8 bits (68), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           YKC+ C K +    +L +H++IH G++
Sbjct: 13  YKCNECGKVFTQNSHLANHQRIHTGVK 39


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 32.0 bits (71), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKCD+C KE+    +L  H+++H G
Sbjct: 13  YKCDVCGKEFSQSSHLQTHQRVHTG 37



 Score = 30.4 bits (67), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKC++C KEF +   L  H+++H G
Sbjct: 13  YKCDVCGKEFSQSSHLQTHQRVHTG 37



 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           YKCD+C KE+     L  H++ H G
Sbjct: 13  YKCDVCGKEFSQSSHLQTHQRVHTG 37


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIRYK-CDLCSKEYFHKGYLTDHKKIHQ 158
           + C+ C K Y     L+ H++ H G R + C  C K +  +  +  H K+HQ
Sbjct: 5   FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56



 Score = 32.0 bits (71), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIRYK-CNLCSKEFLRKDILIEHKKIHQ 185
           + C+ C K Y     L+ H++ H G R + C  C K F  +  +  H K+HQ
Sbjct: 5   FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           YKC+ C K F R   L EH++IH G R
Sbjct: 13  YKCSECGKAFHRHTHLNEHRRIHTGYR 39



 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           YKC  C K +    +L +H++IH G R
Sbjct: 13  YKCSECGKAFHRHTHLNEHRRIHTGYR 39


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKC+ C K + H  YL+ H++IH G
Sbjct: 13  YKCNECGKVFRHNSYLSRHQRIHTG 37



 Score = 28.5 bits (62), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F     L  H++IH G
Sbjct: 13  YKCNECGKVFRHNSYLSRHQRIHTG 37


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y CN C K F +K IL  H++ H G
Sbjct: 13  YGCNECGKTFSQKSILSAHQRTHTG 37


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 31.2 bits (69), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C  C K F RKD L+ H+K H G
Sbjct: 13  YECCECGKVFSRKDQLVSHQKTHSG 37


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 484
          Length = 42

 Score = 31.2 bits (69), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C  C K F+RK   I H++IH G
Sbjct: 11  YVCTECGKAFIRKSHFITHERIHTG 35


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 30.8 bits (68), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F+R   LI H++ H G
Sbjct: 13  YECSECGKAFIRNSQLIVHQRTHSG 37


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.8 bits (68), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C +C K F  +  LI+H+KIH G
Sbjct: 13  YICTVCGKAFTDRSNLIKHQKIHTG 37


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 30.8 bits (68), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C  C K F +K  L +H++IH G
Sbjct: 13  YRCGECGKAFAQKANLTQHQRIHTG 37



 Score = 30.0 bits (66), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C  C K +  K  LT H++IH G
Sbjct: 13  YRCGECGKAFAQKANLTQHQRIHTG 37



 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y+C  C K +  K +LT+H++ H G
Sbjct: 13  YRCGECGKAFAQKANLTQHQRIHTG 37


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.8 bits (68), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           ++C  C K F RK  L  H+KIH G
Sbjct: 13  FECTECGKAFTRKSTLSMHQKIHTG 37


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 30.8 bits (68), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F +   L  H++IH G
Sbjct: 13  YKCNECGKAFSQTSKLARHQRIHTG 37



 Score = 26.6 bits (57), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKC+ C K +     L  H++IH G
Sbjct: 13  YKCNECGKAFSQTSKLARHQRIHTG 37


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.4 bits (67), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F++K  L  H++IH+G
Sbjct: 13  YECSECGKAFIQKSTLSMHQRIHRG 37



 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C  C K +  K  L+ H++IH+G
Sbjct: 13  YECSECGKAFIQKSTLSMHQRIHRG 37


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 30.4 bits (67), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F +   L+ H+ IH G
Sbjct: 13  YKCNECGKVFTQNSHLVRHRGIHTG 37


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKCD+C K + +   LT H++IH G
Sbjct: 13  YKCDVCHKSFRYGSSLTVHQRIHTG 37



 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           YKCD+C K + +  SLT H++ H G
Sbjct: 13  YKCDVCHKSFRYGSSLTVHQRIHTG 37



 Score = 28.1 bits (61), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKC++C K F     L  H++IH G
Sbjct: 13  YKCDVCHKSFRYGSSLTVHQRIHTG 37


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 30.0 bits (66), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C  C K +  KG LT H++IH G
Sbjct: 11  YECQECGKSFRQKGSLTLHERIHTG 35



 Score = 28.1 bits (61), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y+C  C K +  KGSLT H++ H G
Sbjct: 11  YECQECGKSFRQKGSLTLHERIHTG 35



 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C  C K F +K  L  H++IH G
Sbjct: 11  YECQECGKSFRQKGSLTLHERIHTG 35


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.6 bits (65), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F +   L  H+++H G
Sbjct: 13  YKCNECGKVFTQNSHLARHRRVHTG 37



 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKC+ C K +    +L  H+++H G
Sbjct: 13  YKCNECGKVFTQNSHLARHRRVHTG 37


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
           Zinc Finger Protein 32
          Length = 42

 Score = 29.6 bits (65), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y+CD C K +  KGSL  H + H G
Sbjct: 12  YRCDQCGKAFSQKGSLIVHIRVHTG 36



 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+CD C K +  KG L  H ++H G
Sbjct: 12  YRCDQCGKAFSQKGSLIVHIRVHTG 36



 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F +K  LI H ++H G
Sbjct: 12  YRCDQCGKAFSQKGSLIVHIRVHTG 36


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 113 CSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSK 169
           C+K +    ++ +H   H    + C  C K +     L  H+ +H G + ++C    C K
Sbjct: 13  CTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK 72

Query: 170 EFLRKDILIEHKKIHQGIR 188
            F     L  H +IH G R
Sbjct: 73  RFSLDFNLRTHVRIHTGDR 91


>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis In Complex With Galactose
 pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis In Complex With Galactose
 pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis In Complex With Galactose
 pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis In Complex With Galactose
 pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis
 pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis
 pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis
 pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
           Lactis
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 111 DLCSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYL--TDHKK-IHQGIRYKCNLC 167
           +L  KE F++G        H GI ++    +    HK Y    D K+ +H G+     LC
Sbjct: 575 ELFYKEKFYQGGFIWEWANH-GIEFEDVSTADGKLHKAYAYGGDFKEEVHDGVFIMDGLC 633

Query: 168 SKEFLRKDILIEHKKIHQGIRFKC 191
           + E      L+E+KK+ + +  K 
Sbjct: 634 NSEHNPTPGLVEYKKVIEPVHIKI 657


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y CN C K F++K  L  H++IH G
Sbjct: 13  YICNECGKSFIQKSHLNRHRRIHTG 37



 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y C+ C K +  K +L  H++IH G
Sbjct: 13  YICNECGKSFIQKSHLNRHRRIHTG 37


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           YKC +C K F     L++H  +H G R
Sbjct: 13  YKCQVCGKAFRVSSHLVQHHSVHSGER 39



 Score = 26.6 bits (57), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           YKC +C K +    +L  H  +H G R
Sbjct: 13  YKCQVCGKAFRVSSHLVQHHSVHSGER 39


>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
           Of Zinc Finger Protein 692
          Length = 78

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 136 KCDLCSKEYFHKGYLTDHKKIHQ----GIRYKCNLCSKEFLRKDILIEHK 181
           +C++C      K  L  H++ H      +R+ C  C K F + D +  H+
Sbjct: 9   QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58



 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 109 KCDLCSKEYFHKGSLTEHKKRH----QGIRYKCDLCSKEYFHKGYLTDHK 154
           +C++C      K SL  H+++H      +R+ C+ C K +     +  H+
Sbjct: 9   QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C +C K + H+  L+ H++IH G
Sbjct: 13  YECSVCGKAFSHRQSLSVHQRIHSG 37



 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y+C +C K + H+ SL+ H++ H G
Sbjct: 13  YECSVCGKAFSHRQSLSVHQRIHSG 37



 Score = 28.1 bits (61), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C++C K F  +  L  H++IH G
Sbjct: 13  YECSVCGKAFSHRQSLSVHQRIHSG 37


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y CN C K F  K  LI H++IH G
Sbjct: 11  YVCNECGKAFGLKSQLIIHERIHTG 35


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 29.3 bits (64), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F RK  LI H++ H G
Sbjct: 13  YECHECGKAFSRKYQLISHQRTHAG 37


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C++C K F +K  L  H++IH G
Sbjct: 13  YECSICGKSFTKKSQLHVHQQIHTG 37


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F +   L  H+ IH G
Sbjct: 13  YKCNECGKVFTQNSHLARHRGIHTG 37


>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
           Finger Dna-Binding Domain
          Length = 27

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQ 185
           YKC LC + F+ K  L  H+++H+
Sbjct: 2   YKCGLCERSFVEKSALSRHQRVHK 25



 Score = 27.7 bits (60), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQ 158
           YKC LC + +  K  L+ H+++H+
Sbjct: 2   YKCGLCERSFVEKSALSRHQRVHK 25



 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQ 131
           YKC LC + +  K +L+ H++ H+
Sbjct: 2   YKCGLCERSFVEKSALSRHQRVHK 25


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F +   L  H +IH G
Sbjct: 13  YKCNECGKVFTQNSHLTNHWRIHTG 37



 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           YKC+ C K +    +LT+H +IH G
Sbjct: 13  YKCNECGKVFTQNSHLTNHWRIHTG 37


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+CN C K F  +  L  H+ IH G
Sbjct: 13  YECNQCGKAFSVRSSLTTHQAIHTG 37



 Score = 27.3 bits (59), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C+ C K +  +  LT H+ IH G
Sbjct: 13  YECNQCGKAFSVRSSLTTHQAIHTG 37


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+CN C K F +   L  H+++H G
Sbjct: 13  YQCNECGKAFSQTSKLARHQRVHTG 37


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F +   L  H+ IH G
Sbjct: 13  YKCNECGKVFTQNSHLARHRGIHTG 37


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           +KCN C K F +   L  H++IH G
Sbjct: 13  FKCNECKKTFTQSSSLTVHQRIHTG 37



 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           +KC+ C K +     LT H++IH G
Sbjct: 13  FKCNECKKTFTQSSSLTVHQRIHTG 37


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y C+ C K + H   L +H++IH G
Sbjct: 13  YNCEECGKAFIHDSQLQEHQRIHTG 37



 Score = 27.7 bits (60), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C  C K F+    L EH++IH G
Sbjct: 13  YNCEECGKAFIHDSQLQEHQRIHTG 37



 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y C+ C K + H   L EH++ H G
Sbjct: 13  YNCEECGKAFIHDSQLQEHQRIHTG 37


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           +KC+ C K + H  +L+ H+ IH G
Sbjct: 13  FKCNECGKTFSHSAHLSKHQLIHAG 37



 Score = 26.6 bits (57), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           +KCN C K F     L +H+ IH G
Sbjct: 13  FKCNECGKTFSHSAHLSKHQLIHAG 37


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.5 bits (62), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           Y+C  C K +   G+L  HK++H G R
Sbjct: 13  YECKECRKTFIQIGHLNQHKRVHTGER 39


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 137 CDLCSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR-FKCD 192
           C    K +  K  L +H ++H G + + C    C K F R + L  HK+ H G + FKC+
Sbjct: 65  CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124

Query: 193 L 193
            
Sbjct: 125 F 125


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C  C K F  +  L  H+KIH G
Sbjct: 13  YRCAECGKAFTDRSNLFTHQKIHTG 37


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           ++C+ C K FL+    I+H++IH G
Sbjct: 13  HRCSDCGKFFLQASNFIQHRRIHTG 37


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y CN C K F  K  LI H + H G
Sbjct: 13  YVCNECGKAFRSKSYLIIHTRTHTG 37


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C +CSK +  K +L  H+K H G
Sbjct: 13  YECKVCSKAFTQKAHLAQHQKTHTG 37



 Score = 28.1 bits (61), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
           Y+C +CSK +  K  L +H+K H G
Sbjct: 13  YECKVCSKAFTQKAHLAQHQKTHTG 37



 Score = 28.1 bits (61), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C +CSK F +K  L +H+K H G
Sbjct: 13  YECKVCSKAFTQKAHLAQHQKTHTG 37


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           YKC+ C K F RK  L  H++ H G R
Sbjct: 13  YKCSDCGKAFTRKSGLHIHQQSHTGER 39


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C  C K F R   L++H+++H G
Sbjct: 13  YNCKECGKSFSRAPCLLKHERLHSG 37


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C+ C K F++K  L  H++IH G
Sbjct: 13  YECSDCGKSFIKKSQLHVHQRIHTG 37


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           +KC  C K Y  + +LT H+++H G
Sbjct: 13  FKCGECGKSYNQRVHLTQHQRVHTG 37


>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
          Length = 1642

 Score = 28.1 bits (61), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 27   REPLDIPYEVTVKEES-----YEGDSINVEENNGNDAVTRDCLEFFKSHDSTLKNESDHE 81
            +E +D+P ++    E+     Y+   + +EE +GND    D LE  K           H+
Sbjct: 1503 QERIDVPLQIEKACETNVDYVYKTKLLRIEEQDGNDIYVMDVLEVIKQGTDENPRAKTHQ 1562

Query: 82   RRSINYNCQQS 92
              S    CQ++
Sbjct: 1563 YIS-QRKCQEA 1572


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C  C K F +   LI+H+++H G
Sbjct: 13  YECKECGKAFSQTTHLIQHQRVHTG 37


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 28.1 bits (61), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           ++CN C K F  K  LI H++IH G
Sbjct: 11  HECNNCGKAFSFKSQLIIHQRIHTG 35


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F  +  L  H+  H G
Sbjct: 13  YKCNECGKAFRARSSLAIHQATHSG 37


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKCN C K F     L  H+ IH G
Sbjct: 13  YKCNECGKAFRAHSNLTTHQVIHTG 37


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+CN C K F  K  L+ H++ H G
Sbjct: 13  YECNECQKAFNTKSNLMVHQRTHTG 37


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 27.7 bits (60), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           ++C  C K F  K  L+ H++IH G
Sbjct: 13  FECTHCGKSFRAKGNLVTHQRIHTG 37



 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           ++C  C K +  KG L  H++IH G
Sbjct: 13  FECTHCGKSFRAKGNLVTHQRIHTG 37


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 27.7 bits (60), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGI 187
           Y C+ C K F  K  LI H+ IH G+
Sbjct: 11  YVCSDCGKAFTFKSQLIVHQGIHTGV 36


>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 46

 Score = 27.7 bits (60), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           Y C+ C+K F  K  LI H++ H G++
Sbjct: 13  YGCSQCAKTFSLKSQLIVHQRSHTGVK 39


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.7 bits (60), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           ++CD C K +  +  L  H+ IH G
Sbjct: 13  FRCDTCDKSFRQRSALNSHRMIHTG 37



 Score = 26.6 bits (57), Expect = 9.8,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           ++C+ C K F ++  L  H+ IH G
Sbjct: 13  FRCDTCDKSFRQRSALNSHRMIHTG 37


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIH 184
           Y CN C K F R   LIEH K H
Sbjct: 13  YGCNECGKNFGRHSHLIEHLKRH 35


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 27.3 bits (59), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           + C+ C K F  K  LI H+KIH G R
Sbjct: 13  FICSECGKVFTHKTNLIIHQKIHTGER 39



 Score = 26.9 bits (58), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           + C  C K + HK  L  H+KIH G R
Sbjct: 13  FICSECGKVFTHKTNLIIHQKIHTGER 39


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 27.3 bits (59), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C+ C K F  K  LI H + H G
Sbjct: 11  YGCSECGKAFRSKSYLIIHMRTHTG 35


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C+ C K F  K  LI H + H G
Sbjct: 13  YGCSECGKAFSSKSYLIIHMRTHSG 37


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 26.9 bits (58), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 164 CNLCSKEFLRKDILIEHKKIHQG 186
           CN C K F +   L +H++IH G
Sbjct: 13  CNECGKTFRQSSCLSKHQRIHSG 35


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR 161
           YKC+ C K Y  K  L  H+K+H G R
Sbjct: 13  YKCEKCGKGYNSKFNLDMHQKVHTGER 39


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR 188
           YKC+ C K F  K  L  H+K H G R
Sbjct: 13  YKCSDCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           315- 345) Of Human Zinc Finger Protein 473
          Length = 44

 Score = 26.9 bits (58), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIH 184
           Y CN C K F R   L  H+KIH
Sbjct: 13  YNCNECGKAFTRIFHLTRHQKIH 35


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 26.9 bits (58), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C  C K F     L++H+++H G
Sbjct: 13  YNCKECGKSFRWASCLLKHQRVHSG 37


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 26.9 bits (58), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           YKC+ C K F R   L  H+ IH G
Sbjct: 13  YKCHECGKVFRRNSHLARHQLIHTG 37


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
           Zinc Finger Protein 32
          Length = 41

 Score = 26.6 bits (57), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
           Y+C  C K +  +G L  H+++H G
Sbjct: 11  YQCKECGKSFSQRGSLAVHERLHTG 35



 Score = 26.6 bits (57), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y+C  C K F ++  L  H+++H G
Sbjct: 11  YQCKECGKSFSQRGSLAVHERLHTG 35


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 26.6 bits (57), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
           Y C+ C K F     L+ H++IH G
Sbjct: 13  YVCDYCGKAFGLSAELVRHQRIHTG 37


>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
 pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
 pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp
 pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp
 pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
          Length = 422

 Score = 26.6 bits (57), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 27  REPLDIPYEVTVKEESYEGDSINVEENNG-NDAVTRDCLEFFKSHDSTLK--NESDHERR 83
           +E L  PY V +   SY+   + +E  +  ND VT+D  E  K H+  +K    +  E+R
Sbjct: 27  KEKLIFPY-VELDLHSYD---LGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKR 82

Query: 84  SINYNCQQSYKV--GKLNKILHRGIRYKCDLC 113
              +  +Q +K   G +  IL   +  +  +C
Sbjct: 83  VEEFKLKQMWKSPNGTIRNILGGTVFREAIIC 114


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 26.6 bits (57), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 162 YKCNLCSKEFLRKDILIEHKKIHQ 185
           +KCN C K F R+  L  H ++H 
Sbjct: 13  FKCNECGKGFGRRSHLAGHLRLHS 36


>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex Nadp
 pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex Nadp
 pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
 pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
 pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
 pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
          Length = 414

 Score = 26.6 bits (57), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 27  REPLDIPYEVTVKEESYEGDSINVEENNG-NDAVTRDCLEFFKSHDSTLK--NESDHERR 83
           +E L  PY V +   SY+   + +E  +  ND VT+D  E  K H+  +K    +  E+R
Sbjct: 27  KEKLIFPY-VELDLHSYD---LGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKR 82

Query: 84  SINYNCQQSYKV--GKLNKILHRGIRYKCDLC 113
              +  +Q +K   G +  IL   +  +  +C
Sbjct: 83  VEEFKLKQMWKSPNGTIRNILGGTVFREAIIC 114


>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase R132h Mutant In Complex With
           Nadph, Alpha-Ketoglutarate And Calcium(2+)
 pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase R132h Mutant In Complex With
           Nadph, Alpha-Ketoglutarate And Calcium(2+)
 pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase R132h Mutant In Complex With
           Nadph, Alpha-Ketoglutarate And Calcium(2+)
          Length = 425

 Score = 26.6 bits (57), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 27  REPLDIPYEVTVKEESYEGDSINVEENNG-NDAVTRDCLEFFKSHDSTLK--NESDHERR 83
           +E L  PY V +   SY+   + +E  +  ND VT+D  E  K H+  +K    +  E+R
Sbjct: 27  KEKLIFPY-VELDLHSYD---LGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKR 82

Query: 84  SINYNCQQSYKV--GKLNKILHRGIRYKCDLC 113
              +  +Q +K   G +  IL   +  +  +C
Sbjct: 83  VEEFKLKQMWKSPNGTIRNILGGTVFREAIIC 114


>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
          Length = 419

 Score = 26.6 bits (57), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 27  REPLDIPYEVTVKEESYEGDSINVEENNG-NDAVTRDCLEFFKSHDSTLK--NESDHERR 83
           +E L  PY V +   SY+   + +E  +  ND VT+D  E  K H+  +K    +  E+R
Sbjct: 32  KEKLIFPY-VELDLHSYD---LGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKR 87

Query: 84  SINYNCQQSYKV--GKLNKILHRGIRYKCDLC 113
              +  +Q +K   G +  IL   +  +  +C
Sbjct: 88  VEEFKLKQMWKSPNGTIRNILGGTVFREAIIC 119


>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 26.6 bits (57), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 132 GIRYKCDLCSKEYFHKGYLTDHKKIH 157
           G  + CD+C K++  KG L  HK +H
Sbjct: 7   GKTHLCDMCGKKFKSKGTLKSHKLLH 32


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,131,865
Number of Sequences: 62578
Number of extensions: 254948
Number of successful extensions: 1490
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 403
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)