RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13164
(193 letters)
>gnl|CDD|191722 pfam07294, Fibroin_P25, Fibroin P25. This family consists of
several insect fibroin P25 proteins. Silk fibroin
produced by the silkworm Bombyx mori consists of a heavy
chain, a light chain, and a glycoprotein, P25. The heavy
and light chains are linked by a disulfide bond, and P25
associates with disulfide-linked heavy and light chains
by non-covalent interactions. P25 is plays an important
role in maintaining integrity of the complex.
Length = 198
Score = 34.0 bits (78), Expect = 0.029
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 59 VTRDCLEF-FKSHDSTLKNESDHERRSINYNCQQSYKVGKLNKILHRGIRYKCDLCSKEY 117
++ DC F+S+ + L++ S E +Y+ +Y + +L L+ R+ +LCS
Sbjct: 81 LSIDCPNLNFESNRTLLQHRSLQEDSVYSYHINGTYPLIRLTTNLNNANRF--NLCSAFT 138
Query: 118 F 118
F
Sbjct: 139 F 139
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 27.4 bits (61), Expect = 0.49
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRH 130
Y+C C K + K +L EH + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 27.4 bits (61), Expect = 0.57
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIH 184
Y+C C K F K L EH + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 1.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIH 157
Y+C C K + K L +H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|188272 TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase. Members of
this family are tryptophan 2,3-dioxygenase, as confirmed
by several experimental characterizations, and by
conserved operon structure for many of the other
members. This enzyme represents the first of a two-step
degradation to L-kynurenine, and a three-step pathway
(via kynurenine) to anthranilate plus alanine [Energy
metabolism, Amino acids and amines].
Length = 264
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 2 EPKVEESQEHVGASPSLYDPF-RVIKREPLDIPYEV 36
+P++ E +PSLYD R++ R IP EV
Sbjct: 134 DPELHAELEAALHAPSLYDEVLRLLARRGFPIPAEV 169
>gnl|CDD|241193 cd12749, RRM4_RBM12, RNA recognition motif 4 in RNA-binding
protein 12 (RBM12) and similar proteins. This subgroup
corresponds to the RRM4 of RBM12, also termed SH3/WW
domain anchor protein in the nucleus (SWAN), which is
ubiquitously expressed. It contains five distinct RNA
binding motifs (RRMs), also termed RBDs (RNA binding
domains) or RNPs (ribonucleoprotein domains), two
proline-rich regions, and several putative
transmembrane domains. The biological role of RBM12
remains unclear. .
Length = 88
Score = 26.3 bits (58), Expect = 3.6
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 31 DIPYEVTVKEESYEGDSINVEEN------NGNDAVTRDCLEFFKSHDSTLKNESDHERRS 84
+IPY +T K+ + I V+EN + N L FKS D K+E H R+
Sbjct: 6 NIPYSITKKDILQFLEGIGVDENSVQVLVDNNGQGLGQALVQFKSEDDARKSERLH-RKK 64
Query: 85 IN 86
+N
Sbjct: 65 LN 66
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.0 bits (55), Expect = 4.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 109 KCDLCSKEYFHKGSLTEHKKRH 130
KC C K + K +L H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 24.2 bits (53), Expect = 6.7
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 136 KCDLCSKEYFHKGYLTDHKKIH 157
KC C K + K L H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 27.7 bits (61), Expect = 4.7
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 127 KKRHQGIRYKCDLCSKEYFHKGYLTDHKK-----IHQGIRYKC--NLCSKEFLRKDILIE 179
++ + K C+ + LT H + + C +LC K F R D L
Sbjct: 282 SEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKR 341
Query: 180 HKKIHQGIRFKC 191
H +H I
Sbjct: 342 HILLHTSISPAK 353
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 24.5 bits (53), Expect = 5.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRH 130
+KC LC K + K +L H ++H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 23.8 bits (51), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIH 184
+KC LC K F KD L H + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 24.3 bits (53), Expect = 5.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 149 YLTDHKKIHQGIR-YKCNLCSKEFLR 173
L H + H G + YKC +C K F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|238278 cd00498, Hsp33, Heat shock protein 33 (Hsp33): Cytosolic protein
that acts as a molecular chaperone under oxidative
conditions. In normal (reducing) cytosolic conditions,
four conserved Cys residues are coordinated by a Zn ion.
Under oxidative stress (such as heat shock), the Cys
are reversibly oxidized to disulfide bonds, which causes
the chaperone activity to be turned on. Hsp33 is
homodimeric in its functional form.
Length = 275
Score = 26.8 bits (60), Expect = 7.7
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 106 IRYKCDLCSKEYFHKGSLT-------EHKKRHQGIRYKCDLCSKEYF 145
+R++CD CS+E LT + + GI C+ C ++Y
Sbjct: 228 VRFRCD-CSRERVAAALLTLGKEELADMIEEDGGIEVTCEFCGEKYH 273
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,347,380
Number of extensions: 818567
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 684
Number of HSP's successfully gapped: 50
Length of query: 193
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 101
Effective length of database: 6,857,034
Effective search space: 692560434
Effective search space used: 692560434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)