RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13164
(193 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 71.3 bits (176), Expect = 7e-17
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
+KC++C K + K L H + H G++ YKC C L H +IH R +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
+C L H + H G
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 54.4 bits (132), Expect = 2e-10
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
+KC++C K + K L H + H G++ YKC C L +H +IH R FKC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 67.4 bits (166), Expect = 1e-15
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
+ C +C K + +L+ H H R Y C C K + K + H IH G + +KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
+C K F + LI H + H G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 67.8 bits (167), Expect = 2e-15
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
+ C C + + +L H++ H R Y CD+C K + + +L DH+ IH + +KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
C K F + L HK +H
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQ 98
Score = 59.0 bits (144), Expect = 4e-12
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 120 KGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDIL 177
+ + + + + C C + + L H++ H R Y C++C K F R+D L
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 178 IEHKKIHQGIR-FKCD 192
+H+ IH + FKC
Sbjct: 62 RDHRYIHSKEKPFKCQ 77
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 66.7 bits (164), Expect = 3e-15
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
Y C + C + + GSLT H + H G + ++C +C + + +LT H + H G + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 164 CNLCSKEFLRKDILIEHKKIHQG 186
C++C ++F R D H KIH
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 67.5 bits (166), Expect = 1e-14
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
YKC C K + + +L H++ H G + Y C C K + +L H++ H G + YKC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
C K F R+D L H++ H G
Sbjct: 138 ECGKSFSREDNLHTHQRTHTG 158
Score = 67.1 bits (165), Expect = 2e-14
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
Y C C K + L H++ H G + YKC C K + + L H++ H G + YKC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
C K F R+D L H++ H G
Sbjct: 166 ECGKSFSRRDALNVHQRTHTG 186
Score = 66.3 bits (163), Expect = 4e-14
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
Y C C K + L EH++ H G + YKC C K + K LT H++ H G + YKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
C K F ++ L H++ H G
Sbjct: 82 ECGKSFSQRANLRAHQRTHTG 102
Score = 58.6 bits (143), Expect = 3e-11
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 118 FHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKD 175
F S G + Y C C K + +L +H++ H G + YKC C K F K
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 176 ILIEHKKIHQG 186
L H++ H G
Sbjct: 64 DLTRHQRTHTG 74
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 64.4 bits (158), Expect = 3e-14
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR---YK 163
C++C K + L HK H G + Y C +C + K ++ H + H G Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 164 CNLCSKEFLRKDILIEH-KKIHQG 186
C C K F R D L H K++H G
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.5 bits (127), Expect = 1e-09
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIRFK 190
C++C K + +L HK H G + Y C +C F RKD + H + H G K
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 64.5 bits (158), Expect = 4e-14
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 108 YKCD--LCSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQGIR- 161
+ C C+K YF L H ++H G + Y+CD C + + L H++ H G++
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
++C C ++F R D L H + H G
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTG 91
Score = 63.7 bits (156), Expect = 9e-14
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YK 163
Y+CD C + + L H++RH G++ ++C C +++ +L H + H G + +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 164 CNL--CSKEFLRKDILIEHKKIH 184
C C K+F R D L+ H +H
Sbjct: 97 CRWPSCQKKFARSDELVRHHNMH 119
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 63.3 bits (155), Expect = 6e-14
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 103 HRGIR-YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQ 158
C K Y L H + H G + Y CD C ++ LT H + H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 159 GIR-YKCNLCSKEFLRKDILIEHKKIH 184
G R ++C C + F R D L H K H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 49.4 bits (119), Expect = 1e-08
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 125 EHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKDILIEHK 181
+ H C K Y +L H + H G + Y C+ C +F R D L H
Sbjct: 1 KRTATH---TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 182 KIHQGIR-FKCDL 193
+ H G R F+C
Sbjct: 58 RKHTGHRPFQCQK 70
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 63.2 bits (155), Expect = 1e-13
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
Y C C K + HK H H G+R Y C +C K++ K +L H KIH GI+ Y+CN
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 166 LCSKEFLRKDILIEHKKIHQG 186
+C+K F+ +D H+ +
Sbjct: 70 ICAKRFMWRDSF--HRHVTSC 88
Score = 52.4 bits (127), Expect = 1e-09
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
Y C C K + HK H +H G+R Y C +C K+F K L+ H KIH GI+ ++C+
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Score = 52.4 bits (127), Expect = 2e-09
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
Y C +C K++ K L H K H GI+ Y+C++C+K + + H+ + + Y+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95
Query: 166 LCSKEFLRKDIL 177
+
Sbjct: 96 KAEQNTTEASGP 107
Score = 28.9 bits (66), Expect = 0.39
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLT 151
Y+C++C+K + + S H+ + Y+ + +
Sbjct: 66 YECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 62.5 bits (153), Expect = 3e-13
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKK---IHQGIR-Y 162
+C C K++ K L H ++H G + ++C C K YF K L +H+ +++ + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 163 KCNLCSKEFLRKDILIEHKKIHQG 186
C++C + F R+ L H H G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTG 91
Score = 61.4 bits (150), Expect = 8e-13
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKR---HQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-Y 162
++C C K YF K +L EH+ R ++ + + C +C + + + L H H G Y
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 163 KCNLCSKEFLRKDILIEHK-KIHQG 186
KC+ CS++F++K L H K+H G
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSG 120
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 60.9 bits (149), Expect = 4e-13
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 122 SLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIE 179
H + YKCD C + +KG L HK +H G + Y+CN+C +F R L
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 180 HKKIHQG 186
H +IH G
Sbjct: 64 HTRIHSG 70
Score = 50.9 bits (123), Expect = 2e-09
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
YKCD C + +KG+L HK H G + Y+C++C ++ L H +IH G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 60.9 bits (149), Expect = 4e-13
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 119 HKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDI 176
GS + + + R YKCD C K + H L+ H++ H G + YKC+ C K F+++
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 177 LIEHKKIHQG 186
LI H ++H G
Sbjct: 62 LIGHHRVHTG 71
Score = 46.3 bits (111), Expect = 1e-07
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 103 HRGIR-YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
R R YKCD C K + H L++H++ H G + YKCD C K + + +L H ++H G
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 146 HKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
G + + R YKC+ C K F L +H++ H G + +KCD
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCD 50
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 60.3 bits (147), Expect = 1e-12
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQGIR- 161
+ CD C+K Y L H + H G + YKC C + LT H + H G +
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQ 185
++C +C++ F R D L H K HQ
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.5 bits (119), Expect = 1e-08
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 119 HKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLRKD 175
G E ++ H C+K Y +L H + H G + YKC C F R D
Sbjct: 5 SSGPDLEKRRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 176 ILIEHKKIHQGIR-FKCD 192
L H + H G + F+C
Sbjct: 62 ELTRHYRKHTGAKPFQCG 79
Score = 32.2 bits (74), Expect = 0.027
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 103 HRGIR-YKCDLCSKEYFHKGSLTEHKKRHQ 131
H G + ++C +C++ + L H KRHQ
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 60.2 bits (147), Expect = 1e-12
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNL 166
++C +C + + LT H + H G + + CD+C +++ H+ I + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Query: 167 CSKEFLRKDILIEHK---KIHQG 186
+ + L K G
Sbjct: 64 VEELLSKNYHLENEVARLKKLVG 86
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIRFKCD 192
++C +C + + +LT H + H G + + C++C ++F R D H+ I + D
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 60.3 bits (147), Expect = 6e-12
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 107 RYKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCD--LCSKEYFHKGYLTDHKKIHQGIR 161
RY C C Y L H +H G + + C C K + +LT H H G +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 71
Query: 162 -YKCN--LCSKEFLRKDILIEHKKIHQG 186
+ C+ C F K + +H
Sbjct: 72 NFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Score = 59.9 bits (146), Expect = 1e-11
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 108 YKCD--LCSKEYFHKGSLTEHKKRHQGIR---YKCDL--CSKEYFHKGYLTDHKKIHQGI 160
+ CD C + K ++ +H R I+ Y C C K + L H+ H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 161 R-YKCN--LCSKEFLRKDILIEHKKIHQGIR-FKCD 192
Y+C C K F L H+K+H G K D
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 168
Score = 50.3 bits (121), Expect = 3e-08
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKC--DLCSKEYFHKGYLTDHKKIHQGIR- 161
Y C C K + L H+ H Y+C + C K + L H+K+H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 162 YKCNLCSKEFLRKDILIEHKK-IHQ 185
K + CS + ++H HQ
Sbjct: 165 KKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 47.6 bits (114), Expect = 3e-07
Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 126 HKKRHQG-IRYKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCN--LCSKEFLRKDILIE 179
K RY C C Y L H H G + + C C K F L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 180 HKKIHQG 186
H H G
Sbjct: 63 HSLTHTG 69
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 57.9 bits (141), Expect = 7e-12
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 121 GSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-----YKCNLCSKEFLRK 174
GS + H G + Y C C K + K L H K + + C+ C K F R+
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 175 DILIEHKKIHQG 186
+ + H G
Sbjct: 61 NTMARHADNCAG 72
Score = 55.2 bits (134), Expect = 6e-11
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-----YKCDLCSKEYFHKGYLTDHKKIHQGIR- 161
Y C C K + K L H KR+ + C C K + + + H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 162 YKCNLCSKEF 171
+
Sbjct: 76 VEGENSGPSS 85
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 56.7 bits (138), Expect = 1e-11
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 123 LTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEH 180
+ H G + Y C C K + L H+++H G + YKC C K F + LI H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 181 KKIHQG 186
++IH
Sbjct: 62 QRIHTS 67
Score = 44.8 bits (107), Expect = 4e-07
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
Y C C K + L +H++ H G + YKC C K + L +H++IH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 42.8 bits (102), Expect = 2e-06
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 150 LTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
+ IH G + Y C C K F R IL++H+++H G + +KC
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL 46
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 57.5 bits (140), Expect = 2e-11
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YK 163
+ C C K + L H+ H G + ++C C K + L H +IH G R Y
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 164 CNL--CSKEFLRKDILIEHKKIHQG 186
C C+K+F + L H H
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 56.0 bits (136), Expect = 8e-11
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
C C+K + ++ +H H + C C K + L H+ +H G + ++C
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 165 NL--CSKEFLRKDILIEHKKIHQGIR-FKC 191
C K F L H +IH G R + C
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 121 GSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR---YKCNLCSKEFLRKDI 176
GS + H G + Y+C +C + G + H + C C RK
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 177 LIEH-KKIHQG 186
L H +K H
Sbjct: 61 LGVHLRKQHSY 71
Score = 47.9 bits (115), Expect = 3e-08
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR---YKCDLCSKEYFHKGYLTDH-KKIHQG 159
Y+C +C + G++ H + + C C K L H +K H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 148 GYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR---FKCD 192
G + H G + Y+C +C F + + H F C
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCP 49
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 53.7 bits (130), Expect = 2e-10
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKI--HQGIR-YKCNLCSKEFLRKDILIEHKKIHQGI 187
Y+C +CS+ Y H H + ++ Y C C KEF RKD + H KI I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 47.5 bits (114), Expect = 3e-08
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 108 YKCDLCSKEYFHKGSLTEHK--KRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGI 160
Y+C +CS+ Y H + H + ++ Y C C KE+ K +T H KI I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 30.2 bits (69), Expect = 0.062
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 103 HRGIR-YKCDLCSKEYFHKGSLTEHKKRHQGI 133
R ++ Y C C KE+ K ++T H K I
Sbjct: 35 KRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 55.0 bits (133), Expect = 4e-10
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG----------IRYKCDLCSKEYFHKGYLTDHKKIH 157
C + + L H +C K + K L +H ++H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 158 QGIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR-FKC 191
G + + C C K F R + L HK+ H G + FKC
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Score = 52.7 bits (127), Expect = 2e-09
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 95 VGKLNKILHRGIRYKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLT 151
VG + H +C K + K L H + H G + + C C K + L
Sbjct: 50 VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 152 DHKKIHQGIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR-FKCD 192
HK+ H G + +KC C + F +H +H +
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 12/92 (13%)
Query: 113 CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG----------IR 161
K + C + + L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
+C K F K L+ H ++H G + F C
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.8 bits (127), Expect = 5e-10
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR----YKCNLCSKEFLRKDILIEHKKIH 184
+C++C K L H++ H + C C K F + D + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 52.4 bits (126), Expect = 7e-10
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR----YKCDLCSKEYFHKGYLTDHKKIH 157
+C++C K SL H+++H + C+ C K + + H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 52.5 bits (127), Expect = 5e-10
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
KC CS K L H++IH R +KCN CS + + L +H K G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 51.0 bits (123), Expect = 2e-09
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
KC CS K +L H++ H R +KC+ CS + L+ H K G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 51.1 bits (123), Expect = 3e-09
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCD--LCSKEYFHKGYLTDHKKIHQGIR- 161
Y C C K + L H+ H Y+C C K + L H+K+H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 162 YKCNLCSKEFLRKDILIEH-KKIH 184
K + CS + ++H + H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 44.5 bits (106), Expect = 7e-07
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCN--LCSKEFLRKDILIEHKKIHQGIR- 188
Y C C K + L H+ H Y+C C K F L H+K+H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 189 FKCD 192
K D
Sbjct: 62 KKDD 65
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 52.6 bits (127), Expect = 3e-09
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKR---HQGIR-YKCDLC-----SKEYFHKGYLTDHKKIHQ 158
+ D CS+E+ + L H H + + C + + + L H + H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 159 GIR-YKCNL--CSKEFLRKDILIEHKKIHQGIR-FKCD 192
G + +KC C K + R + L H + H G + + C+
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Score = 48.7 bits (117), Expect = 8e-08
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKC--DLCSKEYFHKGYLTDHKK-IHQGIR 161
+KC C K Y +L H + H G + Y C + CSK + + H+ H +
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 162 -YKCNL--CSKEFLRKDILIEHKKIHQG 186
Y C L C+K + L +H K G
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 48.6 bits (117), Expect = 1e-08
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEH-KKIHQG 186
+ C++C++ + + +L H + H + Y C LC++ F R+D+LI H +KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 38.6 bits (91), Expect = 6e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDH-KKIHQG 159
+ C++C++ + + L H + H + Y C LC++ + + L H +KIH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.3 bits (72), Expect = 0.022
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
+ C +C++ F R++ L H + H + + C
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG 34
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 46.0 bits (110), Expect = 1e-07
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKK-RHQGIR-YKCD--LCSKEYFHKGYLTDHKKIHQGIR 161
CD C + + ++ L HKK +H + + C C K + K +L +H K+H R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 162 -YKCNLCSKEF 171
Y C
Sbjct: 68 DYICEFSGPSS 78
Score = 42.2 bits (100), Expect = 5e-06
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 135 YKCDL--CSKEYFHKGYLTDHKKI-HQGIR-YKCN--LCSKEFLRKDILIEHKKIHQGIR 188
CD C + + ++ YL HKK H + + C C K F K L EH K+H R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 189 -FKCD 192
+ C+
Sbjct: 68 DYICE 72
Score = 32.1 bits (74), Expect = 0.019
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 100 KILHRGIR-YKCD--LCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSK 142
K H + + C C K + K L EH K H R Y C+
Sbjct: 30 KYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP 76
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 44.6 bits (106), Expect = 5e-07
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 135 YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIH 184
Y C + C + + LT H +IH G + ++C +C + F R D L H + H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.4 bits (95), Expect = 2e-05
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 108 YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIH 157
Y C + C + + LT H + H G + ++C +C + + +LT H + H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 30.0 bits (68), Expect = 0.11
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 162 YKCNL--CSKEFLRKDILIEHKKIHQGIR-FKCDL 193
Y C + C + F R D L H +IH G + F+C +
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI 54
Score = 28.4 bits (64), Expect = 0.38
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 103 HRGIR-YKCDLCSKEYFHKGSLTEHKKRH 130
H G + ++C +C + + LT H + H
Sbjct: 44 HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 45.5 bits (107), Expect = 5e-07
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 8/92 (8%)
Query: 97 KLNKILHRG-IRYKCDLCSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKK 155
KL + G +++C CS Y LT H R + +
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRS 67
Query: 156 IHQGIR-------YKCNLCSKEFLRKDILIEH 180
+ + KC C F L H
Sbjct: 68 LLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 38.2 bits (88), Expect = 3e-04
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 122 SLTEHKKRHQG-IRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNLCSKEFLRKDILIEH 180
S + G +++C CS Y LT H R + ++
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 181 KKIHQG 186
+ + +
Sbjct: 66 RSLLEM 71
Score = 30.9 bits (69), Expect = 0.10
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 150 LTDHKKIHQG-IRYKCNLCSKEFLRKDILIEHKKIHQGIRFKCD 192
+ I G +++C CS + L H R
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH 50
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.8 bits (100), Expect = 2e-06
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
+Y C+ C L +H + H +R Y C C+ + KG LT H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 40.9 bits (95), Expect = 8e-06
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 134 RYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
+Y C+ C L H + H +R Y C C+ F K L +H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 26.6 bits (58), Expect = 1.1
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 161 RYKCNLCSKEFLRKDILIEHKKIHQGIR-FKCD 192
+Y C C + +L +H + H +R + C
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCT 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 42.7 bits (100), Expect = 3e-06
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 121 GSLTEHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNLCSKEFLRKDILIE 179
GS + +K H G R KC C + + L+ K C C K+ ++ L +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT------PMCEKCRKDSCQEAALNK 57
Query: 180 HKKIHQG 186
+ G
Sbjct: 58 DEGNESG 64
Score = 25.0 bits (54), Expect = 6.3
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 87 YNCQQSYKVGKLNKILHRGIRYKCDLCSKEYFHKGSLTEHKKRHQG 132
C + + L R C+ C K+ + +L + + G
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESG 64
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 43.0 bits (100), Expect = 5e-06
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNL 166
Y+C LC+ + H++ + C CS +F +H+ + + C
Sbjct: 16 VYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE 74
Query: 167 CSKEFLRKDILIEHKK 182
C + F + H+
Sbjct: 75 CMRTFKSSFSIWRHQV 90
Score = 39.5 bits (91), Expect = 7e-05
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 123 LTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNLCSKEFLRKDILIEHKK 182
+ Y+C LC+ + H+++ + C CS F ++ EH+
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN-AAVCPYCSLRFFSPELKQEHES 63
Query: 183 IHQGIRFKC 191
+ + C
Sbjct: 64 KCEYKKLTC 72
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 9e-06
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQGIR-FKC 191
G R Y CN C K F R LIEH K H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R Y C+ C K + +L +H K H + +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 29.4 bits (67), Expect = 0.097
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C+ C K + L EH KRH +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 40.8 bits (96), Expect = 1e-05
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 120 KGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKIHQGIR-YKCNL--CSKEFLR 173
+ + IR + C C K YF +L H + H G + + C+ C + F R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 174 KDILIEHKKIH 184
D L H++ H
Sbjct: 62 SDELSRHRRTH 72
Score = 29.7 bits (67), Expect = 0.11
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 103 HRGIR-YKCDL--CSKEYFHKGSLTEHKKRHQGIR-YKCDL--CSKEYFHKGYLTDHKKI 156
IR + C C K YF L H + H G + + C C + + L+ H++
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 157 H 157
H
Sbjct: 72 H 72
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.7 bits (91), Expect = 3e-05
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
+ Y CN C K F R L H+KIH
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 125 EHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
+ Y C+ C K + +LT H+KIH
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 26.4 bits (59), Expect = 1.1
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y C+ C K + LT H+K H
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTR 37
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 4e-05
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R Y+C+ C K F RK LI H++IH G
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG 37
Score = 33.2 bits (77), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 125 EHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R Y+C C K + K L H++IH G + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K +L H++ H G +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 38.3 bits (90), Expect = 5e-05
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F R L +H+KIH G
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
Score = 34.8 bits (81), Expect = 9e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + L+ H+KIH G + +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.28
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L++H+K H G +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 5e-05
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R ++C+ C K FL+ I+H++IH G
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G R ++C C K + H++IH G
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
Score = 26.7 bits (60), Expect = 0.78
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
++C C K + + +H++ H G
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTG 37
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 6e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC+ C K F R L EH++IH G
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG 37
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC C K + +L +H++IH G R +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 28.2 bits (64), Expect = 0.21
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC C K + L EH++ H G R
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 7e-05
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC++C K F + L H +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 36.3 bits (85), Expect = 2e-04
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KCD+C K + + L H +H + +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.020
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCD 138
+KCD+C K + + L H H +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 9e-05
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H +IH G
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + +LT+H +IH G + +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 27.8 bits (63), Expect = 0.29
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + LT H + H G +
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 9e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C C K F R L++H+++H G
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y C C K + L H+++H G + +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.54
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C C K + L +H++ H G +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 9e-05
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R +KCN C K F++ LI+H++IH G
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R +KC+ C K + +L H++IH G + +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.90
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC+ C K + L +H++ H G +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 9e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
+ YKC C K + R+ L H+++H G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
+ YKC+ C K Y + L H+++H G + +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 29.4 bits (67), Expect = 0.082
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K Y + +L H++ H G +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 9e-05
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y CN C K F++K L H++IH G
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTG 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y C+ C K + K +L H++IH G + +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.52
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C+ C K + K L H++ H G +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L+ H+ IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
Score = 33.2 bits (77), Expect = 0.003
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + +L H+ IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 0.99
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L H+ H G +
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G++ Y CN C K F L H+ IH G
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G++ Y C+ C K + LT H+ IH G + +
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.068
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C+ C K + SLT H+ H G +
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G Y+C+ C K F RK LI H++ H G
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G Y+C C K + K L H++ H G + +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.32
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K L H++ H G +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KCN C K F + L H++IH G
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC+ C K + LT H++IH G + +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.10
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC+ C K + SLT H++ H G +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G Y+C C K F RKD L+ H+K H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 29.8 bits (68), Expect = 0.067
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G Y+C C K + K L H+K H G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
Score = 25.9 bits (58), Expect = 1.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y+C C K + K L H+K H G
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSG 37
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F L H+ IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + LT H+ IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.092
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + +LT H+ H G +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 1e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y CN+C K F+ L +H ++H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 125 EHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y C++C K + +L H ++H +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 27.9 bits (63), Expect = 0.36
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCD 138
Y C++C K + L +H + H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C C K F RK L H+KIH G
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + ++C C K + K L+ H+KIH G + +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.23
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
++C C K + K +L+ H+K H G +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 1e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC C K F +H+++H G
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC C K + T H+++H G R +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 30.2 bits (69), Expect = 0.051
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC C K + S T+H++ H G R
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H+ IH G
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 33.6 bits (78), Expect = 0.002
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + +L H+ IH G + +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L H+ H G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H++IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + L H++IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.36
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L H++ H G +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H++IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 33.6 bits (78), Expect = 0.002
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + +L +H++IH G++ +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 26.7 bits (60), Expect = 0.79
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L H++ H G++
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+CN C K F+ K +LI H++ H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 30.6 bits (70), Expect = 0.032
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G + Y+C+ C K + K L H++ H G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y+C+ C K + K L H++ H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAG 37
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + C+ C K F K LI H+KIH G
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + C C K + HK L H+KIH G R +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 29.0 bits (66), Expect = 0.13
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+ C C K + HK +L H+K H G R
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R Y+C C K F K LI H++ H G
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R Y+C C K + K L H++ H G + +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.17
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K SL H++ H G +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C C K F +K L +H++IH G
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG 37
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C C K + K LT H++IH G + +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.14
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K +LT+H++ H G +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R Y+C+ C K F++K L H++IH+G
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 125 EHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R Y+C C K + K L+ H++IH+G + +
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.52
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K +L+ H++ H+G +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 1e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+CN C K F K L+ H++ H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 31.3 bits (72), Expect = 0.020
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
G + Y+C+ C K + K L H++ H G
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 0.42
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C+ C K + K +L H++ H G
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC C K F+ + L H +H G
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 35.2 bits (82), Expect = 8e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + + L H +H G + +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.075
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + + L H H G +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC+ C K F R L H+ IH G
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
Score = 33.2 bits (77), Expect = 0.004
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 129 RHQGIR-----YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
YKC C K + +L H+ IH G + +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC C K + L H+ H G +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC++C K F L H++IH G
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
Score = 36.3 bits (85), Expect = 3e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKCD+C K + + LT H++IH G + +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.034
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKCD+C K + + SLT H++ H G +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H+ IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
Score = 33.2 bits (77), Expect = 0.004
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + +L H+ IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 1.7
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L H+ H G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H+++H G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + +L H+++H G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 25.9 bits (58), Expect = 1.3
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + L H++ H G +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC++C KEF + L H+++H G
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKCD+C KE+ +L H+++H G + +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.10
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKCD+C KE+ L H++ H G +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC+ C K F RK L H++ H G
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC C K + K L H++ H G R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 29.4 bits (67), Expect = 0.084
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC C K + K L H++ H G R
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R +KCN C K F R+ L H ++H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R +KC+ C K + + +L H ++H + +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 27.9 bits (63), Expect = 0.33
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC+ C K + + L H + H +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G R Y C +C K F + LI+H+KIH G
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G R Y C +C K + + L H+KIH G + +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.17
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C +C K + + +L +H+K H G +
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C+ C K F L+ H++IH G
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y CD C K + L H++IH G + +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.32
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y CD C K + L H++ H G +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC +C K F L++H +H G
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 125 EHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC +C K + +L H +H G R +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 27.5 bits (62), Expect = 0.49
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC +C K + L +H H G R
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + + C C K F L +H++IH G
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + + C C K + L H++IH G + +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.14
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+ C C K + L +H++ H G +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 36.8 bits (86), Expect = 2e-04
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C+ C K F +K LI H ++H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 31.8 bits (73), Expect = 0.010
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G + Y+CD C K + KG L H ++H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 29.1 bits (66), Expect = 0.10
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y+CD C K + KGSL H + H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTG 36
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDH-KKIHQGIR-YKCNLCSKEF 171
+ Y C C K + +L H K++H R +KC +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 34.5 bits (80), Expect = 0.002
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKR-HQGIR-YKCDLCSK 142
Y C C K + L H K+ H R +KC +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 32.2 bits (74), Expect = 0.012
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEH-KKIHQGIR-FKCD 192
+ Y C C K F R D L H K++H R KC
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y CN C K F +K IL H++ H G
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y C+ C K + K L+ H++ H G + +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.15
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C+ C K + K L+ H++ H G +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC C K + ++ L +H+++H G
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
Score = 33.6 bits (78), Expect = 0.002
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC C K Y + +LT H+++H G + +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.70
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC C K Y + LT+H++ H G +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+CN C K F + L H+ IH G
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C+ C K + + LT H+ IH G + +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 29.4 bits (67), Expect = 0.095
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C+ C K + + SLT H+ H G +
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 36.8 bits (86), Expect = 2e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C C K F K L+ H++IH G
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + ++C C K + KG L H++IH G + +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 28.7 bits (65), Expect = 0.15
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
++C C K + KG+L H++ H G +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C C K F+ L EH++IH G
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y C+ C K + H L +H++IH G + +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.077
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C+ C K + H L EH++ H G +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.5 bits (85), Expect = 2e-04
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 153 HKKIHQGIR-YKCN--LCSKEFLRKDILIEHKKIHQGIR-FKCD 192
G + + C C F R D L H++ H G++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 31.1 bits (71), Expect = 0.026
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 126 HKKRHQGIR-YKCD--LCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + + C C + L+ H++ H G++ +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 26.5 bits (59), Expect = 0.99
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 103 HRGIR-YKCD--LCSKEYFHKGSLTEHKKRHQGIR-YKCD 138
G + + C C + L+ H++ H G++
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G++ Y C+ C+K F K LI H++ H G
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 32.5 bits (75), Expect = 0.006
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G++ Y C C+K + K L H++ H G++ +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 26.7 bits (60), Expect = 0.68
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C C+K + K L H++ H G++
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C++C K F L +H+++H G
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+CD+C K + H LT H+++H G + +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.037
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+CD+C K + H SLT+H++ H G +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+CN C K F + L H+++H G
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG 37
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C+ C K + L H+++H G + +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.56
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C+ C K + L H++ H G +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC+ C K F K L H+K H G
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 36.0 bits (84), Expect = 4e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC C K + K L H+K H G R +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 30.2 bits (69), Expect = 0.044
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC C K + K L H+K H G R
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C C K F + LI+H+KIH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y C C K + + L H+KIH + +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 27.5 bits (62), Expect = 0.38
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C C K + + +L +H+K H +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC C K + K L H+K+H G
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 35.2 bits (82), Expect = 8e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K Y K L H+K+H G R +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 29.4 bits (67), Expect = 0.079
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K Y K +L H+K H G R
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 36.3 bits (85), Expect = 3e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C C K F + LI+H+++H G
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 33.2 bits (77), Expect = 0.004
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C C K + +L H+++H G + +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.74
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + L +H++ H G +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C+ C K F++K L H++IH G
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
Score = 32.1 bits (74), Expect = 0.009
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C C K + K L H++IH G +
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 27.9 bits (63), Expect = 0.34
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K L H++ H G
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C+ C K F K LI H + H G
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 32.5 bits (75), Expect = 0.006
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
G + Y C C K + K YL H + H G +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.56
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C C K + K L H + H G +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 3e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F L H++IH G
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
Score = 35.2 bits (82), Expect = 8e-04
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + H YL+ H++IH G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.20
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + H L+ H++ H G +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC C K F + L H+++H G
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 33.3 bits (77), Expect = 0.003
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC+ C K + L H+++H G + +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.45
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC+ C K + L H++ H G +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 4e-04
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C C K F + L H+KIH G
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 31.7 bits (73), Expect = 0.011
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
G + Y+C C K + + L H+KIH G +
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.17
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + + +L H+K H G +
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
+ ++C+ C + F K L +H++IH G
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 31.0 bits (71), Expect = 0.022
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
+ ++C C + + K +L H++IH G
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
Score = 26.0 bits (58), Expect = 1.4
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
++C C + + K L +H++ H G
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTG 37
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC C K F R+ L H K+H G
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
Score = 32.1 bits (74), Expect = 0.009
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC C K + + L H K+H G + +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.10
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC C K + + +L H K H G +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 4e-04
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C+ C K F K LI H++ H G
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
Score = 30.9 bits (71), Expect = 0.021
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
G + ++C C K + K L H++ H G +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 0.48
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
++C C K + K +L H++ H G +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKCN C K F + L H+ H G
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 34.1 bits (79), Expect = 0.002
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC+ C K + + L H+ H G + +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.12
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC+ C K + + SL H+ H G +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C C K F LI H++IH G
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 32.1 bits (74), Expect = 0.008
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + ++C C K + L H++IH G +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 26.0 bits (58), Expect = 1.3
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
++C C K + L H++ H G
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 4e-04
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C C K F + L H+++H G
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 125 EHKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + ++C+ C K + +L H+++H G + +
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.87
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
++C+ C K + L H++ H G +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.9 bits (84), Expect = 4e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G++ Y CN C K F K LI H + H G
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 31.3 bits (72), Expect = 0.020
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
G++ Y C+ C K + K YL H + H G
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 0.97
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C+ C K + K L H + H G
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 4e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC C K F + L H +IH G
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 33.2 bits (77), Expect = 0.004
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC C K + +L H +IH G + +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 0.91
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC C K + L H + H G +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
+G + Y+C+ C K F L +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
+G + Y+C C K + LT H H + +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 29.4 bits (67), Expect = 0.081
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + LT+H H +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 5e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 152 DHKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC C K + R+ L H+++H G
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 32.9 bits (76), Expect = 0.005
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + YKC C K Y + L H+++H G + +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 28.3 bits (64), Expect = 0.23
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCD 138
YKC C K Y + L H++ H G +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 6e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C++C K F + L H++IH G
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 34.8 bits (81), Expect = 9e-04
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C +C K + H+ L+ H++IH G + +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 29.8 bits (68), Expect = 0.058
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C +C K + H+ SL+ H++ H G +
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 6e-04
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C +CSK F +K L +H+K H G
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 33.3 bits (77), Expect = 0.003
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C +CSK + K +L H+K H G + +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.48
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C +CSK + K L +H+K H G +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (82), Expect = 6e-04
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC C K F H++ H G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 31.4 bits (72), Expect = 0.016
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC+ C K ++ H++ H G + +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.52
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCD 138
+KC+ C K ++ H++ H G +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C C K F L++H+++H G
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 129 RHQGIR-----YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
Y C C K + L H+++H G + +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.35
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y C C K + L +H++ H G +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 7e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C++C K F +K L H++IH G
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
Score = 32.5 bits (75), Expect = 0.006
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C +C K + K L H++IH G + +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.56
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C +C K + K L H++ H G +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 35.2 bits (82), Expect = 8e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 154 KKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G Y+C+ C K F RKD LI H++ H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAG 35
Score = 29.4 bits (67), Expect = 0.089
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
Y+C C K + K L H++ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 26.7 bits (60), Expect = 0.67
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + K L H++ H G
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 35.2 bits (82), Expect = 8e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C C K F L H++IH G
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 30.9 bits (71), Expect = 0.028
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKC 164
G + ++C C K + L H++IH G +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.96
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
++C C K + L H++ H G +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.9 bits (81), Expect = 8e-04
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + + C+ C K F L H+++H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 31.4 bits (72), Expect = 0.015
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G + + CD C K + + L H+++H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
Score = 27.2 bits (61), Expect = 0.49
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
+ CD C K + + +L H++ H G
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMG 37
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + +KC C + L H+ +H G + +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + +KC C F + L H+ +H G
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 30.6 bits (70), Expect = 0.031
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+KC C + SL H+ H G +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G+ YKC+ C K F K L+ H+++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G+ YKC C K + K L H+++H + +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 29.4 bits (67), Expect = 0.080
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
YKC C K + K L H++ H +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.8 bits (80), Expect = 0.001
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G +KC+ C + F +++ L++H++ H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 32.5 bits (74), Expect = 0.007
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G +KC C + + + YL H++ H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 28.3 bits (63), Expect = 0.25
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
+KC C + + + L +H++ H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHAR 37
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIH 184
+ GI+ ++C C + F R D L H+K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (62), Expect = 0.31
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIH 157
+ GI+ ++C C + + +L H+K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 0.97
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 103 HRGIR-YKCDLCSKEYFHKGSLTEHKKRH 130
GI+ ++C C + + L H+KRH
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.5 bits (80), Expect = 0.001
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + KC C K F K LI H++ H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + KC C K + K L H++ H + +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 28.3 bits (64), Expect = 0.20
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
KC C K + K L H++ H +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y+C C K F++ L +HK++H G
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 33.3 bits (77), Expect = 0.004
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
G + Y+C C K + G+L HK++H G R +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 27.5 bits (62), Expect = 0.45
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
Y+C C K + G L +HK+ H G R
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.1 bits (82), Expect = 0.002
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 102 LHRGIRYKCDLCSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIR 161
L R I + L ++ C LC + L H + +
Sbjct: 42 LIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH-T 100
Query: 162 YKCNLCSKEFLRKDILIEH-KKIHQGIR 188
C +C KEF D ++H K H
Sbjct: 101 KVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 28.7 bits (63), Expect = 0.59
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 109 KCDLCSKEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFH-KGYLTDHKKIHQGIRYKCNLC 167
+ +E LT +KR K + + + YL ++ C LC
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLC 80
Query: 168 SKEFLRKDILIEHKKIHQ 185
F L +H + +
Sbjct: 81 LMPFSSSVSLKQHIRYTE 98
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCN 165
+ C C K + K YL H++ H + +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 33.3 bits (77), Expect = 0.003
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
+ C+ C K F K L+ H++ H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAE 35
Score = 28.7 bits (65), Expect = 0.14
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQGIR-YKC 137
+ C C K + K L H++ H +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 33.6 bits (78), Expect = 0.003
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G + Y C++C + H L H +IH G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 31.7 bits (73), Expect = 0.011
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + Y C +C F L H +IH G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 30.9 bits (71), Expect = 0.020
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y C++C + H +L H + H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTG 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + YKC C F++ L H IH G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 32.5 bits (75), Expect = 0.006
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G + YKC+ C + +L H IH G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 28.6 bits (65), Expect = 0.13
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
YKC+ C + L H H G
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTG 36
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.1 bits (76), Expect = 0.005
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
Y C C + F + L++H+K+H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
Score = 30.4 bits (69), Expect = 0.038
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
Y C C + + L H+K+H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
Score = 28.1 bits (63), Expect = 0.22
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y C C + + L +H+K H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTV 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.9 bits (76), Expect = 0.005
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
Y+C C K F +K L H++IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 31.0 bits (71), Expect = 0.024
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
Y+C C K + KG LT H++IH G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
Score = 28.3 bits (64), Expect = 0.18
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y+C C K + KGSLT H++ H G
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTG 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEH-KKIHQG 186
G + Y+C C K F++ LI H + H G
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 29.1 bits (66), Expect = 0.14
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDH-KKIHQGIR-YKCN 165
G + Y+C C K + L H + H G + +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 24.8 bits (55), Expect = 4.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKR-HQGIR-YKC 137
Y+C C K + SL H + H G +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.8 bits (73), Expect = 0.013
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G + ++C C F L +H + H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 28.3 bits (64), Expect = 0.19
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 126 HKKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
G + ++C C + L H + H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 26.8 bits (60), Expect = 0.89
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
++C C + SL +H + H+
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHER 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.4 bits (71), Expect = 0.016
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 134 RYKCDLCSKEYFHKGYLTDHKKIHQGIR-YKCNLCS 168
+ C++C K + +L HK H G + Y S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 29.9 bits (67), Expect = 0.058
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIR-YKCDLCS 141
+ C++C K + L HK H G + Y S
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 0.33
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 161 RYKCNLCSKEFLRKDILIEHKKIHQG 186
+ C +C K F L HK H G
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSG 37
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.0 bits (70), Expect = 0.016
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 162 YKCNLCSKEFLRKDILIEH-KKIHQG 186
Y C LC++ F R+D+LI H +KIH G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.7 bits (76), Expect = 0.032
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 154 KKIHQGIRYKCNLCSKEFLRKDILIEHKKIH 184
G Y+C++CS L H H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.13
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 109 KCDLCSKEYFHKGSLTEHKKRH-QGIRYKCDLCSKEYFHKGYLTDHKKIH 157
+ S + G Y+C +CS F L H H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.4 bits (70), Expect = 0.23
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 98 LNKILHRGIRYKCDLCSKEYFHKGSLTEHKKRH 130
L G Y+C +CS F L H H
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.1 bits (72), Expect = 0.036
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 118 FHKGSLTEHKKRHQGIRYKCDLCS-----KEYFHKGYLTDHKKIHQGIRYKCNLCSKEFL 172
H + + Y+C C+ F ++H + Y C C+
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61
Query: 173 RKDILIEH-KKIHQG 186
R D L EH K H G
Sbjct: 62 RYDALSEHNLKYHPG 76
Score = 25.5 bits (55), Expect = 6.1
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 107 RYKCDLCS-----KEYFHKGSLTEHKKRHQGIRYKCDLCSKEYFHKGYLTDH-KKIHQG 159
Y+C C+ F +EH Y C C+ L++H K H G
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 30.3 bits (69), Expect = 0.039
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 153 HKKIHQGIR-YKCNLCSKEFLRKDILIEHKKIHQG 186
G Y C C K F ++ L H++
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 30.3 bits (69), Expect = 0.041
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
Y C C K + +G L H++
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQ 36
Score = 29.2 bits (66), Expect = 0.090
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQG 132
Y C C K + +GSL H++
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQ 36
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.9 bits (67), Expect = 0.044
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 161 RYKCNLCSKEFLRKDILIEHKKIHQGIR 188
++ C C K F+R D L +H +H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
Score = 24.5 bits (53), Expect = 4.6
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIR 134
++ C C K + L++H H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
Score = 23.7 bits (51), Expect = 8.5
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 134 RYKCDLCSKEYFHKGYLTDHKKIHQGIR 161
++ C C K + +L+ H +H+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.5 bits (66), Expect = 0.071
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 161 RYKCNLCSKEFLRKDILIEHKKIHQGIR 188
++ C C K F+R D L H +H+ +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 23.7 bits (51), Expect = 7.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIR 134
++ C C K + LT H H+ +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.1 bits (64), Expect = 0.11
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 163 KCNLCSKEFLRKDILIEHKKIHQG 186
+C C K F +LIEH+ +H G
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAG 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.9 bits (67), Expect = 0.16
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 22/94 (23%)
Query: 101 ILHRGIRYKCDLCSKEYFHKGSLTEH-KKRHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQ 158
I + C + + L H H G +C E
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE--------------- 63
Query: 159 GIRYKCNLCSKEFLRKDILIEHKKIHQGIR-FKC 191
+C K F K L+ H ++H G +
Sbjct: 64 ----ECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.3 bits (62), Expect = 0.20
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
Y C +C F RKD + H + H G
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHDG 35
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.40
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 104 RGIRYKCDLCSKEYFHKGSLTEHKKRHQG 132
G YKC CS K +L H ++H G
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTG 34
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.0 bits (59), Expect = 0.46
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQ 185
YKC LC + F+ K L H+++H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.9 bits (56), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQ 158
YKC LC + + K L+ H+++H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.5 bits (55), Expect = 1.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 108 YKCDLCSKEYFHKGSLTEHKKRHQ 131
YKC LC + + K +L+ H++ H+
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 28.0 bits (62), Expect = 0.55
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 122 SLTEHKKRH-QGIRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNLCSKEFLRKDILIEH 180
+ H++ C C E L +H+ C C + L KD L H
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLE-LSILKLKEHEDYCGARTELCGNCGRNVLVKD-LKTH 61
Query: 181 KKIHQG 186
++
Sbjct: 62 PEVCGR 67
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 26.8 bits (60), Expect = 0.58
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 162 YKCN--LCSKEFLRKDILIEHKKIHQGIR 188
+ C C K F R D L HK+ H G +
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 0.70
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 134 RYKCDLCSKEYFHKGYLTDHKKIH 157
+KC+ C K + YLT H++IH
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.9 bits (56), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 161 RYKCNLCSKEFLRKDILIEHKKIH 184
+KCN C K F L +H++IH
Sbjct: 12 CFKCNKCEKTFSCSKYLTQHERIH 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.1
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 13/52 (25%)
Query: 86 NYNC--QQSYKVG-------KLNKIL-HRGIRYKCDLCS-KEYFHKGSLTEH 126
NYN QQ Y + +L ++ K D+ ++ + H
Sbjct: 1845 NYNVENQQ-YVAAGDLRALDTVTNVLNFIKLQ-KIDIIELQKSLSLEEVEGH 1894
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.3 bits (54), Expect = 3.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 157 HQGIRYKCNLCSKEFLRKDILIEHKKIHQG 186
H RY+C+ C F + LI+H+K H
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTHAA 37
Score = 24.1 bits (51), Expect = 7.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 130 HQGIRYKCDLCSKEYFHKGYLTDHKKIHQG 159
H RY+C C + + +L H+K H
Sbjct: 8 HTRKRYECSKCQATFNLRKHLIQHQKTHAA 37
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
demethylase, H3K9, jumonji domain-CONT protein 2D,
oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
2w2i_A*
Length = 354
Score = 27.3 bits (59), Expect = 3.4
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 79 DHERRSINYNCQQSYKV---------GKLNKILHRGIRYKCDLCSKEYFHKGSLTEHKK- 128
D + SINY K +L ++ C HK +L
Sbjct: 195 DMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVL 254
Query: 129 RHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
+ GI + + E+ H + G
Sbjct: 255 KENGIPFNRITQEAGEFMVTFPYGYHAGFNHG 286
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 25.8 bits (56), Expect = 3.5
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 9/37 (24%)
Query: 104 RGIRYKC---------DLCSKEYFHKGSLTEHKKRHQ 131
+G+R+ C D C HK+ HQ
Sbjct: 33 QGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQ 69
Score = 25.4 bits (55), Expect = 4.7
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 23/70 (32%)
Query: 129 RHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKC---------NLCSKEFLRKDILIE 179
+H G +KCD C E G+R+ C + C
Sbjct: 18 QHVG--FKCDNCGIEPIQ------------GVRWHCQDCPPEMSLDFCDSCSDCLHETDI 63
Query: 180 HKKIHQGIRF 189
HK+ HQ
Sbjct: 64 HKEDHQLEPI 73
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 24.6 bits (54), Expect = 3.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
+ C +C++ F R++ L H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN 27
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 63
Score = 25.2 bits (55), Expect = 3.7
Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 18/62 (29%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRHQGIRYKC------DLCSKEYFHKGYLTDHKKIHQGI 160
+C C E G RY+C LC ++ H HQ
Sbjct: 11 PVECSYCHSESM------------MGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMK 58
Query: 161 RY 162
Y
Sbjct: 59 EY 60
Score = 24.8 bits (54), Expect = 5.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 104 RGIRYKC------DLCSKEYFHKGSLTEHKKRHQGIRY 135
G RY+C LC ++ + H +HQ Y
Sbjct: 23 MGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 107 RYKCDLCSKEYFHKGSLTEHKKRH 130
+ CD+C K++ KG+L HK H
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLLH 32
Score = 24.0 bits (51), Expect = 5.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 134 RYKCDLCSKEYFHKGYLTDHKKIH 157
+ CD+C K++ KG L HK +H
Sbjct: 9 THLCDMCGKKFKSKGTLKSHKLLH 32
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 27.3 bits (60), Expect = 3.9
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 25/116 (21%)
Query: 77 ESDHERRSINYNCQQSYKVGKLNKIL-HR------GIRYKCDLCSKEYFHKGSLTEHKKR 129
S+ E ++ + + + + ++++ H+ C C+ F G
Sbjct: 11 PSEGEESTVRFARKGALRQKNVHEVKNHKFTARFFKQPTFCSHCT--DFIWGF------G 62
Query: 130 HQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNLCSKEFLRKDILIEHKKIHQ 185
QG ++C +CS HK+ H+ + + C K D +HK
Sbjct: 63 KQG--FQCQVCS--------FVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIH 108
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded
beta helix, demethylase, oxygenase, SGC, STR genomics,
structural genomics consortium, oxidoreductase; HET: MLY
ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A*
2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A*
3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A*
2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Length = 381
Score = 26.9 bits (58), Expect = 4.8
Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 11/92 (11%)
Query: 79 DHERRSINYNCQQSYKV---------GKLNKILHRGIRYKCDLCSKEYFHKGSLTEHKK- 128
D + SINY K +L ++ C HK +L
Sbjct: 213 DMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLML 272
Query: 129 RHQGIR-YKCDLCSKEYFHKGYLTDHKKIHQG 159
+ GI K + E+ H + G
Sbjct: 273 KKYGIPFDKVTQEAGEFMITFPYGYHAGFNHG 304
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 24.2 bits (52), Expect = 4.9
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 162 YKCNL--CSKEFLRKDILIEHKKIHQ 185
Y C+ C K F+R LI HKK HQ
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 24.3 bits (52), Expect = 5.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 162 YKCNLCSKEFLRKDILIEHKK 182
+ C C K F+R D L +H K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (52), Expect = 5.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 162 YKCNLCSKEFLRKDILIEHKKIHQG 186
++C C + F + LIEH+ +H G
Sbjct: 13 HQCRECGEIFFQYVSLIEHQVLHMG 37
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 98
Score = 25.8 bits (56), Expect = 5.5
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 14/44 (31%)
Query: 124 TEHKKRHQGIRYKCDLCSKEYFHKGYLTDHKKIHQGIRYKCNLC 167
E +H GI C+ C + +G YKC C
Sbjct: 23 KERLDKHLGIP--CNNCKQFPI------------EGKCYKCTEC 52
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 23.9 bits (51), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 135 YKCDLCSKEYFHKGYLTDHKKIHQG 159
Y C C +++ G L H +IH G
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTG 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,858,547
Number of extensions: 156944
Number of successful extensions: 1038
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 464
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)