BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13169
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 109 RKTFFYSLNIPAPAPSLEIYQ 129
+KT FY+ N PAP +E+++
Sbjct: 68 KKTLFYTYNGLVPAPKIEVFE 88
>pdb|4GUP|A Chain A, Structure Of Mhc-Class I Related Molecule Mr1
pdb|4GUP|C Chain C, Structure Of Mhc-Class I Related Molecule Mr1
Length = 271
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 8/38 (21%)
Query: 12 VVPEGDGT--------LVDRNAHLFTCPHENSGVHFVV 41
++P GDGT L ++++L++C E+SGVH V+
Sbjct: 231 ILPSGDGTYQAWASIELDPQSSNLYSCHVEHSGVHMVL 268
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 107 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 164
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 165 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 199
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 104 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 161
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 162 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 196
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 112 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 169
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 170 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 204
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 55 LFTCPHENSARLWFPCIDTYSEVCTWRLEFTVDENLTAV 93
LF+ AR W P DT S T+ T D++L AV
Sbjct: 141 LFSQNQAIHARSWIPIQDTPSVRVTYTARITTDKDLLAV 179
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 107 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 164
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 165 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 199
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 106 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 163
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 164 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 198
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 112 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 169
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 170 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 204
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 106 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 163
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 164 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 198
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 106 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 163
Query: 88 ENLTAVSCGDLIEVVYTPDMR---RKTFFYSLNIPAP 121
+ L A+ I TPD RK + + +P P
Sbjct: 164 KELVALMSA--IRDGETPDPEDPSRKIYKFIQKVPIP 198
>pdb|2LPU|A Chain A, Solution Structures Of Kmatg10
Length = 152
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 65 RLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLN 117
RLW +DT ++ + RL D L ++ V + DM K+ +Y +N
Sbjct: 69 RLW--SLDTEEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYIN 119
>pdb|3VX7|B Chain B, Crystal Structure Of Kluyveromyces Marxianus Atg7ntd-Atg10
Complex
Length = 152
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 65 RLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLN 117
RLW +DT ++ + RL D L ++ V + DM K+ +Y +N
Sbjct: 69 RLW--SLDTEEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYIN 119
>pdb|2X2Y|A Chain A, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
pdb|2X2Y|B Chain B, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
Length = 475
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 20 LVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAH 54
+ RNA++ T + ++G HFV GD L D A+
Sbjct: 312 VASRNAYMETWRNADAGQHFVPVPGDALLEDFQAY 346
>pdb|2PXS|A Chain A, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.2 A Resolution (mature
State)
pdb|2PXS|B Chain B, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.2 A Resolution (mature
State)
pdb|2PXW|A Chain A, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.4 A Resolution
(transition State)
pdb|2PXW|B Chain B, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.4 A Resolution
(transition State)
Length = 227
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 71 IDTYSEVC----TWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLE 126
+D + C TW F ++ + D+ V M ++ FY +N PA P ++
Sbjct: 76 VDYFKNSCPAGYTWDRSFLFEDGAVCICNADITVSVEENCMYHESKFYGVNFPADGPVMK 135
>pdb|2OJK|A Chain A, Crystal Structure Of Green Fluorescent Protein From
Zoanthus Sp At 2.2 A Resolution
pdb|2OJK|B Chain B, Crystal Structure Of Green Fluorescent Protein From
Zoanthus Sp At 2.2 A Resolution
Length = 229
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 71 IDTYSEVC----TWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLE 126
+D + C TW F ++ + D+ V M ++ FY +N PA P ++
Sbjct: 78 VDYFKNSCPAGYTWDRSFLFEDGAVCICNADITVSVEENCMYHESKFYGVNFPADGPVMK 137
>pdb|2FL1|A Chain A, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
pdb|2FL1|B Chain B, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
pdb|2FL1|C Chain C, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
pdb|2FL1|D Chain D, Crystal Structure Of Red Fluorescent Protein From
Zoanthus, Zrfp574, At 2.4a Resolution
Length = 226
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 71 IDTYSEVC----TWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLE 126
+D + C TW F ++ + D+ V + ++ FY +N PA P ++
Sbjct: 75 VDYFKNSCPAGYTWHRSFRFEDGAVCICSADITVNVRENCIYHESTFYGVNFPADGPVMK 134
>pdb|2BVT|A Chain A, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVT|B Chain B, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVY|A Chain A, The Structure And Characterization Of A Modular
Endo-Beta-1, 4-Mannanase From Cellulomonas Fimi
Length = 475
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 20 LVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAH 54
+ RNA++ T + ++G HFV GD L D A+
Sbjct: 312 VASRNAYMETWANFDAGQHFVPVPGDALLEDFQAY 346
>pdb|2ICR|A Chain A, Red Fluorescent Protein Zrfp574 From Zoanthus Sp.
pdb|2ICR|B Chain B, Red Fluorescent Protein Zrfp574 From Zoanthus Sp.
pdb|2ICR|C Chain C, Red Fluorescent Protein Zrfp574 From Zoanthus Sp.
pdb|2ICR|D Chain D, Red Fluorescent Protein Zrfp574 From Zoanthus Sp
Length = 237
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 71 IDTYSEVC----TWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLE 126
+D + C TW F ++ + D+ V + ++ FY +N PA P ++
Sbjct: 86 VDYFKNSCPAGYTWHRSFRFEDGAVCICSADITVNVRENCIYHESTFYGVNFPADGPVMK 145
>pdb|2ZVB|A Chain A, Crystal Structure Of Tt0207 From Thermus Thermophilus Hb8
pdb|2ZVC|A Chain A, Form 2 Structure (C2221) Of Tt0207 From Thermus
Thermophilus Hb8
Length = 295
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 70 CIDTYSEVCT-WRLEFTVDENLTAVSCGDLIEVVYTPDMRRK 110
C+ + S++ T W L ++ L A GD + V+Y P +R+
Sbjct: 150 CLISLSDLLTPWPL---IERRLHAAGQGDFVVVLYNPQSKRR 188
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 20 LVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAH 54
+ RNA+ T + ++G HFV GD L D A+
Sbjct: 312 VASRNAYXETGENADAGQHFVPVPGDALLEDFQAY 346
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 62 NSARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFY 114
S+ LW P + S+ CT F E+ T + G + Y F Y
Sbjct: 34 GSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGY 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,306,807
Number of Sequences: 62578
Number of extensions: 181765
Number of successful extensions: 479
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 25
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)