BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13169
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio
GN=taf2 PE=2 SV=2
Length = 1191
Score = 134 bits (337), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 82/113 (72%)
Query: 15 EGDGTLVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTY 74
+GD V + F+ G+HFVVP+ +G + +R AH+F+ ++NS+R WFPC+D+Y
Sbjct: 126 QGDEMKVMKVYIEFSLDQPKGGLHFVVPDVEGNMAERAAHVFSFGNQNSSRFWFPCVDSY 185
Query: 75 SEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
SE+CTW+LEFTVD ++ AVSCGDL+E VYT DMR+KT+ Y L IP AP++ +
Sbjct: 186 SELCTWKLEFTVDASMVAVSCGDLVETVYTHDMRKKTYHYMLPIPTAAPNISM 238
>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus
GN=Taf2 PE=2 SV=2
Length = 1104
Score = 132 bits (332), Expect = 5e-31, Method: Composition-based stats.
Identities = 54/100 (54%), Positives = 74/100 (74%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F+ G+HFVVP +G++ +R AH+F+C ++NS R WFPC+D+YSE+CTW+LEFTVD
Sbjct: 140 FSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVD 199
Query: 88 ENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
+ AVS GDL+E VYT DMR+KTF Y L IP A ++ +
Sbjct: 200 AAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISL 239
>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens
GN=TAF2 PE=1 SV=3
Length = 1199
Score = 132 bits (332), Expect = 7e-31, Method: Composition-based stats.
Identities = 54/100 (54%), Positives = 74/100 (74%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F+ G+HFVVP +G++ +R AH+F+C ++NS R WFPC+D+YSE+CTW+LEFTVD
Sbjct: 150 FSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVD 209
Query: 88 ENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
+ AVS GDL+E VYT DMR+KTF Y L IP A ++ +
Sbjct: 210 AAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTAASNISL 249
>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus
GN=TAF2 PE=2 SV=1
Length = 1168
Score = 130 bits (328), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/100 (53%), Positives = 74/100 (74%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F+ G+HFVVP +G++ +R AH+F+C ++NS R WFPC+D+YSE+CTW+LE+TVD
Sbjct: 140 FSLDQPKGGLHFVVPNMEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEYTVD 199
Query: 88 ENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
+ AVS GDL+E VYT DMR+KTF Y L IP A ++ +
Sbjct: 200 AAMVAVSNGDLVETVYTHDMRKKTFHYMLAIPTAASNISL 239
>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila
melanogaster GN=Taf2 PE=1 SV=2
Length = 1221
Score = 125 bits (315), Expect = 5e-29, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 78/102 (76%), Gaps = 2/102 (1%)
Query: 28 FTCPHENSGVHFVVPEG--DGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFT 85
F+ + GVHFV+P D ++H+FT +ENS+RLWFPC+D++++ CTWRLEFT
Sbjct: 140 FSLENPKCGVHFVIPPASTDEETQMNSSHMFTNCYENSSRLWFPCVDSFADPCTWRLEFT 199
Query: 86 VDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
VD+N+TAVSCG+L+EV+ TPD+R+KTF YS++ P AP++ +
Sbjct: 200 VDKNMTAVSCGELLEVIMTPDLRKKTFHYSVSTPVCAPNIAL 241
>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1
SV=3
Length = 1407
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 62 NSARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLI 99
+SA W PC+D E TW LEF+V + + LI
Sbjct: 217 SSASYWVPCVDLLDEKSTWELEFSVPRLVKNIGTSKLI 254
>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf2 PE=3 SV=3
Length = 1172
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 59/130 (45%)
Query: 51 RNAHLFT----CPHENSARLWFPCIDTYSEVCTWRLEFTV-------------------- 86
R H+FT P+ + W PC+D E TW E T+
Sbjct: 144 RYPHVFTNNSIIPYSTCS--WLPCVDGIWERSTWEFEITLPKTLSSLMHREKTQPSDLNN 201
Query: 87 -------------------------------DENLTAVSCGDLIEVVYTP-DMRRKTFFY 114
D ++ + CGDL++ V P DMR+KT ++
Sbjct: 202 GANGVDGHDDNYENNRFDHQFNLSNEPDLLEDHDIEVICCGDLLDQVTHPKDMRKKTVYF 261
Query: 115 SLNIPAPAPS 124
S+ P AP+
Sbjct: 262 SVTTPV-APN 270
>sp|Q8VCT3|AMPB_MOUSE Aminopeptidase B OS=Mus musculus GN=Rnpep PE=2 SV=2
Length = 650
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 33 ENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVDENLTA 92
E GV ++ PE T + ++T R +FPC DT + CT+ V + TA
Sbjct: 146 EGPGVCWLAPEQ--TAGKKKPFVYTQGQAVLNRAFFPCFDTPAVKCTYSALIEVPDGFTA 203
Query: 93 VSCGDLIEVVYTPDMRRKTFFYSLNIPAPA 122
V D E FF+ ++ P P+
Sbjct: 204 VMSADTWE-----KRGPNKFFFQMSHPIPS 228
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2
Length = 918
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 16 GDGTLVDRNAHL--FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDT 73
GD T++ +H F P+ +G+ F+VP DG ++ +F P + LW +
Sbjct: 539 GDTTILANRSHYVDFALPYSETGIVFLVPVKDGK--EKGEWVFLKPL--TKELWLVTAAS 594
Query: 74 --YSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPA 120
Y + W E+ DE D I V+ T F++ P+
Sbjct: 595 FLYIGIMVWIFEYQADEEFREQMIIDKISSVFY--FSFSTLFFAHRRPS 641
>sp|O09175|AMPB_RAT Aminopeptidase B OS=Rattus norvegicus GN=Rnpep PE=1 SV=2
Length = 650
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 33 ENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVDENLTA 92
E GV ++ PE T + ++T R +FPC DT + CT+ V + TA
Sbjct: 146 EGPGVCWLAPEQ--TAGKKKPFVYTQGQAVLNRAFFPCFDTPAVKCTYSALVEVPDGFTA 203
Query: 93 VSCGDLIEVVYTPDMRR--KTFFYSLNIPAPA 122
V E RR FF+ ++ P P+
Sbjct: 204 VMSASTWE-------RRGPNKFFFQMSQPIPS 228
>sp|Q6FTM0|LKHA4_CANGA Leukotriene A-4 hydrolase homolog OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CAGL0G01430g PE=3 SV=1
Length = 652
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 54 HLFTCPHENSARLWFPCIDT--YSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKT 111
++F+ AR FPC DT Y T +E T+ + ++ G TP+
Sbjct: 161 YMFSQLEAIHARALFPCFDTPSYKSTFTANIESTLPVVFSGIATGS------TPNGESTV 214
Query: 112 FFYSLNIPAPA 122
+ + +IP PA
Sbjct: 215 YHFKQDIPIPA 225
>sp|P19602|LKHA4_CAVPO Leukotriene A-4 hydrolase OS=Cavia porcellus GN=LTA4H PE=1 SV=3
Length = 611
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R + PC DT S T+ E +V
Sbjct: 107 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAFLPCQDTPSVKLTYTAEVSVP 164
Query: 88 ENLTAV-SCGDLIEVVYTPDMRRKTFFYSLNIPAP 121
+ L A+ S E D RK + +S +P P
Sbjct: 165 KELVALMSAIRDGEAPDPADPSRKIYKFSQKVPIP 199
>sp|Q8XD75|YGFK_ECO57 Uncharacterized protein YgfK OS=Escherichia coli O157:H7 GN=ygfK
PE=4 SV=1
Length = 1032
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 69 PCIDTYSEV--CTWRLEFTV----DENLTAVSCGDLIEVVYTPDMRRKTFFYSLNI 118
PCID E W EFT+ DE L A L+E ++ P K+F +++++
Sbjct: 96 PCIDAEDECFNTEWSTEFTLLKAWDEYLKAWFALHLLEAMFQPSDSGKSFIFNMSV 151
>sp|Q46811|YGFK_ECOLI Uncharacterized protein YgfK OS=Escherichia coli (strain K12)
GN=ygfK PE=4 SV=1
Length = 1032
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 69 PCIDTYSEV--CTWRLEFTV----DENLTAVSCGDLIEVVYTPDMRRKTFFYSLNI 118
PCID E W EFT+ DE L A L+E ++ P K+F +++++
Sbjct: 96 PCIDAEDECFNTEWSTEFTLLKAWDEYLKAWFALHLLEAMFQPSDSGKSFIFNMSV 151
>sp|Q9UPS8|ANR26_HUMAN Ankyrin repeat domain-containing protein 26 OS=Homo sapiens
GN=ANKRD26 PE=1 SV=3
Length = 1709
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 42 PEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVC-TWRLEFTVDENLTAVSCGDLIE 100
PE LVDR L C +EN L + E C T LE D NL V +
Sbjct: 93 PEVVTLLVDRKCQLNVCDNENRTAL-MKAVQCQEEKCATILLEHGADPNLADVHGNTALH 151
Query: 101 -VVYTPDMR--RKTFFYSLNIPA 120
VY D+ K Y NI A
Sbjct: 152 YAVYNEDISVATKLLLYDANIEA 174
>sp|Q3SZH7|LKHA4_BOVIN Leukotriene A-4 hydrolase OS=Bos taurus GN=LTA4H PE=2 SV=3
Length = 611
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Query: 28 FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
F ++S + ++ PE T + +LF+ R PC DT S T+ E +V
Sbjct: 107 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYSAEVSVP 164
Query: 88 ENLTAVSCGDLIEVVYTP-DMRRKTFFYSLNIPAP 121
+ L A+ P D RK + +S +P P
Sbjct: 165 KELVALMSAIRDGEAPDPEDPNRKIYRFSQKVPIP 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,081,469
Number of Sequences: 539616
Number of extensions: 2164868
Number of successful extensions: 5166
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5149
Number of HSP's gapped (non-prelim): 24
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)