RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13169
         (129 letters)



>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
           hydrolysis, hydrolase, leukotriene biosynthesis,
           metal-binding, metalloprotease; 1.47A {Homo sapiens}
           SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
           2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
           3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
           3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
          Length = 616

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 28  FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
           F    ++S + ++ PE   T    + +LF+       R   PC DT S   T+  E +V 
Sbjct: 112 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 169

Query: 88  ENLTAVSCGDLI-EVVYTPDMRRKTFFYSLNIPAPA 122
           + L A+       E     D  RK + +   +P P 
Sbjct: 170 KELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 205


>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
           {Colwellia psychrerythraea}
          Length = 605

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 64  ARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPA 122
           AR W P  DT S   T+    T D++L AV   +          R   +F+S+    P 
Sbjct: 150 ARSWIPIQDTPSVRVTYTARITTDKDLLAVMSANNEPG----TERDGDYFFSMPQAIPP 204


>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
           metal-binding, metalloprotease, protease, hydrolase,
           adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
           2yd0_A* 3qnf_A* 3mdj_A*
          Length = 897

 Score = 34.8 bits (80), Expect = 0.005
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 64  ARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFY 114
           AR+ FPC D  +   ++ ++   +    A+S   L++ V   +   +  F 
Sbjct: 142 ARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFD 192


>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
           domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
           MES MAN; 3.08A {Homo sapiens}
          Length = 967

 Score = 33.6 bits (77), Expect = 0.012
 Identities = 9/52 (17%), Positives = 19/52 (36%)

Query: 63  SARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFY 114
            AR+ FPC D       + ++   +    A+S    ++ +       +  F 
Sbjct: 203 QARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFE 254


>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
           {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
          Length = 632

 Score = 31.7 bits (72), Expect = 0.046
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 28  FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
           F    + + + ++  +          ++F+      AR  FPC DT S   T+    +++
Sbjct: 118 FRTTDKCTALQWLNSKQTK---GGKPYVFSQLEAIHARSLFPCFDTPSVKSTF--TASIE 172

Query: 88  ENLTAVSCGDLIE 100
             L  V  G  IE
Sbjct: 173 SPLPVVFSGIRIE 185


>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
           structural genomics, protein structure initiative; 2.05A
           {Neisseria meningitidis}
          Length = 867

 Score = 31.8 bits (72), Expect = 0.049
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 10/56 (17%)

Query: 64  ARLWFPCID------TYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFF 113
            R     ID       +    T  +          +S G+ I+     D R    +
Sbjct: 121 FRKITFYIDRPDVMSKF----TTTIVADKKRYPVLLSNGNKIDGGEFSDGRHWVKW 172


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.062
 Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query: 115 SLNIPAP--APSLEI 127
           SL + A   AP+L I
Sbjct: 28  SLKLYADDSAPALAI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.27
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 43/126 (34%)

Query: 19  TLVDR-NAHLFTCPHE--------NSGVHFVV---PEGDGTLVDRNAHL---FTCPHENS 63
             V++ N+HL   P          N   + VV   P+   +L   N  L         + 
Sbjct: 351 DYVNKTNSHL---PAGKQVEISLVNGAKNLVVSGPPQ---SLYGLNLTLRKAKAPSGLDQ 404

Query: 64  ARLWFPCIDTYSE---VCTWR-LEFTV---DENLTAVSCGDLIEVVYTPDMRRKTFFY-- 114
           +R+  P    +SE     + R L          L   S  DLI      D+ +    +  
Sbjct: 405 SRI--P----FSERKLKFSNRFLPVASPFHSHLLVPAS--DLIN----KDLVKNNVSFNA 452

Query: 115 -SLNIP 119
             + IP
Sbjct: 453 KDIQIP 458


>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
           membrane, metal-binding, metalloprotease; HET: PHE;
           1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
           2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
           2dq6_A 2dqm_A* 2zxg_A*
          Length = 891

 Score = 29.1 bits (65), Expect = 0.39
 Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 64  ARLWFPCIDTYSEVCTWRLEFTVDEN--LTAVSCGDLIEVVYTPDMRRKTFF 113
            R     +D    +  +  +   D+      +S G+ +      + R    +
Sbjct: 146 FRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGNRVAQGELENGRHWVQW 197


>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
           freeze-trapping, asymmetric gating, allost mechanism;
           6.20A {Torpedo marmorata} PDB: 4aq9_C
          Length = 522

 Score = 29.0 bits (64), Expect = 0.50
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 45  DGTLVDRNAHLFTCPHENSARLWFPC-IDTYSEVCTWRL-EFTVDENLTAVSCGDL---I 99
           +   +  +    T   ++    W     + ++E   W +      +N+      +     
Sbjct: 175 NANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQ 234

Query: 100 EVVYTPDMRRKTFFYSLNIPAPA 122
           +V +   +RRK  FY +N   P 
Sbjct: 235 DVTFYLIIRRKPLFYVINFITPC 257


>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 370

 Score = 28.3 bits (63), Expect = 0.71
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 94  SCGDL--IEVVYTPDMRRKTFFYSLNIPAPA 122
           +  D+   E+++   ++RK  FY +NI AP 
Sbjct: 192 TKDDIDFQEIIFFLIIQRKPLFYIINIIAPC 222


>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
           freeze-trapping, asymmetric gating, allost mechanism;
           6.20A {Torpedo marmorata} PDB: 4aq9_E
          Length = 488

 Score = 28.6 bits (63), Expect = 0.71
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 94  SCGDL--IEVVYTPDMRRKTFFYSLNIPAPA 122
           +  D+   E+++   ++RK  FY +NI AP 
Sbjct: 199 TKDDIDFQEIIFFLIIQRKPLFYIINIIAPC 229


>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
           acetylcholine receptors, transmembrane domain, HFI
           junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
          Length = 164

 Score = 27.9 bits (62), Expect = 0.72
 Identities = 7/24 (29%), Positives = 13/24 (54%)

Query: 99  IEVVYTPDMRRKTFFYSLNIPAPA 122
             + +  + RRK  FY++N+  P 
Sbjct: 16  ENLYFQSNARRKPLFYTINLIIPC 39


>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 370

 Score = 28.3 bits (63), Expect = 0.73
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 99  IEVVYTPDMRRKTFFYSLNIPAPA 122
            +V +   ++RK  FY +    P 
Sbjct: 196 EDVTFYLIIQRKPLFYIVYTIVPC 219


>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
           freeze-trapping, asymmetric gating, allost mechanism;
           6.20A {Torpedo marmorata} PDB: 4aq9_B
          Length = 493

 Score = 28.2 bits (62), Expect = 0.79
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 72  DTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTFFYSLNIPAPAPSLEI 127
           D ++E   W +E                +V +   ++RK  FY +    P   + I
Sbjct: 202 DAFTENGQWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISI 257


>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
           freeze-trapping, asymmetric gating, allost mechanism;
           6.20A {Torpedo marmorata} PDB: 4aq9_A
          Length = 461

 Score = 28.0 bits (62), Expect = 0.80
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 94  SCGDL--IEVVYTPDMRRKTFFYSLNIPAPA 122
            C D   +++ Y   M+R   ++ +N+  P 
Sbjct: 216 CCPDTPYLDITYHFIMQRIPLYFVVNVIIPC 246


>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
           chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
           PDB: 4afg_A*
          Length = 230

 Score = 27.6 bits (61), Expect = 1.2
 Identities = 5/50 (10%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 71  IDTYSEVCTWRL-EFTVDENLTAVSCGDL--IEVVYTPDMRRKTFFYSLN 117
           +       +  + E +         C +   +E+ Y   +R +    + +
Sbjct: 171 VLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYS 220


>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
           oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
           2rgo_A*
          Length = 571

 Score = 27.7 bits (62), Expect = 1.2
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 8   GVHFVVPEGDGTLVDRNAHLFTCPHENSGVHFVVPEGDGTLV 49
           G+H VV      L       F    ++  + F +P  + T  
Sbjct: 271 GIHLVVDA--KKLPVPQPTYFDTGKQDGRMVFAIPRENKTYF 310


>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
           {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
           PDB: 1ord_A*
          Length = 730

 Score = 27.7 bits (61), Expect = 1.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 9   VHFVVPEGDGTLVDRNAH 26
              +V  GD  L DRN H
Sbjct: 206 TSALVSNGDLVLFDRNNH 223



 Score = 27.7 bits (61), Expect = 1.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 37  VHFVVPEGDGTLVDRNAH 54
              +V  GD  L DRN H
Sbjct: 206 TSALVSNGDLVLFDRNNH 223


>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
           glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
           b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
           3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
          Length = 211

 Score = 27.2 bits (60), Expect = 1.4
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 71  IDTYSEVCTWRL-EFTVDENLTAVSCGDL--IEVVYTPDMRRKTFFY 114
            + +S+   + + + T  +N    SC      +V  + + R+K    
Sbjct: 163 SEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSE 209


>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
           gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
           acidophilum} PDB: 1z1w_A 3q7j_A*
          Length = 780

 Score = 27.3 bits (61), Expect = 1.7
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 63  SARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTPDMRRKTF 112
            AR  FPC+D  +    + +   +D++  A+S       +   + +   F
Sbjct: 104 DARRMFPCVDHPAYKAVFAITVVIDKDYDAISNMPPKR-IEVSERKVVEF 152


>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 369

 Score = 27.2 bits (60), Expect = 2.0
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 71  IDTYSEVCTWRL-EFTVDENLTAVSCGDL---IEVVYTPDMRRKTFFYSLNIPAPA 122
            + ++E   W +      +N+      +     +V +   +RRK  FY +N   P 
Sbjct: 166 PEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPC 221


>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
           {Staphylococcus aureus}
          Length = 446

 Score = 27.1 bits (60), Expect = 2.0
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 9   VHFVVPEGDGTLVDRNAH 26
           +     +    L+ RN H
Sbjct: 89  IQSFSQKKGDILMARNVH 106



 Score = 27.1 bits (60), Expect = 2.0
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 37  VHFVVPEGDGTLVDRNAH 54
           +     +    L+ RN H
Sbjct: 89  IQSFSQKKGDILMARNVH 106


>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
           dependent decarboxylase, acid stress stringent response;
           HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
          Length = 715

 Score = 26.9 bits (59), Expect = 2.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 9   VHFVVPEGDGTLVDRNAH 26
             +  P G   L+DRN H
Sbjct: 228 GMYSAPAGSTILIDRNCH 245



 Score = 26.9 bits (59), Expect = 2.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 37  VHFVVPEGDGTLVDRNAH 54
             +  P G   L+DRN H
Sbjct: 228 GMYSAPAGSTILIDRNCH 245


>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
           PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
           {Escherichia coli}
          Length = 755

 Score = 27.0 bits (59), Expect = 2.3
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 9   VHFVVPEGDGTLVDRNAH 26
           +   + + D  +VDRN H
Sbjct: 238 MQACMTDNDVVVVDRNCH 255



 Score = 27.0 bits (59), Expect = 2.3
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 37  VHFVVPEGDGTLVDRNAH 54
           +   + + D  +VDRN H
Sbjct: 238 MQACMTDNDVVVVDRNCH 255


>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
           ION channel, electron microscopy, ION transport,
           postsynaptic membrane; 4.00A {Torpedo marmorata}
          Length = 370

 Score = 26.4 bits (58), Expect = 2.9
 Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 94  SCGDL--IEVVYTPDMRRKTFFYSLNIPAPA 122
            C D   +++ Y   M+R   ++ +N+  P 
Sbjct: 192 CCPDTPYLDITYHFIMQRIPLYFVVNVIIPC 222


>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45;
           DFF40, DFF45, protein-protein complex, CIDE, CIDE domain
           complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
          Length = 145

 Score = 25.9 bits (56), Expect = 3.3
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 20  LVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCP 59
           L  +   +       + V  V+   DGT+VD + +    P
Sbjct: 87  LRSKACDILAIDKSLTPVTLVL-AEDGTIVDDDDYFLCLP 125


>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
           structural genomics, PSI-2, protein structure
           initiative; HET: FAD; 2.70A {Bacillus halodurans}
          Length = 561

 Score = 26.1 bits (58), Expect = 3.8
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 8   GVHFVVPEGDGTLVDRNAHLFTCPHENSG-VHFVVPEGDGTLV 49
           GVH VV +       R A  F    E+ G + F +P    T +
Sbjct: 252 GVHLVVDQ--SRFPLRQAVYF--DTESDGRMIFAIPREGKTYI 290


>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
           protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
           californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
           2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
           2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
           2xnt_A* 2xnu_A* ...
          Length = 228

 Score = 25.9 bits (57), Expect = 4.4
 Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 3/51 (5%)

Query: 71  IDTYSEVCTWRL-EFTVDENLTAVSCGDL--IEVVYTPDMRRKTFFYSLNI 118
           + +Y     + +   T    +   SC     I+V      R +        
Sbjct: 174 LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFR 224


>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
           domain, transport PROT; NMR {Homo sapiens}
          Length = 137

 Score = 25.5 bits (56), Expect = 4.8
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 106 DMRRKTFFYSLNIPAP 121
           +      FY++N+  P
Sbjct: 2   NAEELPLFYTINLIIP 17


>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
           nitrogen-calcium coordination, BET propeller; HET: ME2
           MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
           1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
           2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
           2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
          Length = 314

 Score = 25.1 bits (55), Expect = 9.0
 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 18  GTLVDRNAHLFTCPHENSGVHFVVPEGDGT-LVDRNAH 54
           G   DR+A+         G+  V  +G    +  +++ 
Sbjct: 75  GCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSE 112


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.467 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,073,048
Number of extensions: 112423
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 39
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.3 bits)