RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13169
         (129 letters)



>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 208

 Score = 46.7 bits (110), Expect = 7e-08
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 28  FTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPCIDTYSEVCTWRLEFTVD 87
           F    ++S + ++ PE   T    + +LF+       R   PC DT S   T+  E +V 
Sbjct: 106 FETSPKSSALQWLTPEQ--TSGKEHPYLFSQCQAIHCRAILPCQDTPSVKLTYTAEVSVP 163

Query: 88  ENLTAVSCGDLI-EVVYTPDMRRKTFFYSLNIPAPA 122
           + L A+       E     D  RK + +   +P P 
Sbjct: 164 KELVALMSAIRDGETPDPEDPSRKIYKFIQKVPIPC 199


>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 113

 Score = 24.8 bits (54), Expect = 2.3
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 6/42 (14%)

Query: 4   PTFCGVHFVVPEG--DGTLVDRNAHLFTCPHENSGVHFVVPE 43
             + GV +  P G  DG++       F C     G  FV P 
Sbjct: 64  GYWVGVRYDEPLGKNDGSV--NGKRYFECQ-AKYGA-FVKPS 101


>d1bhga1 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 103

 Score = 24.7 bits (53), Expect = 3.0
 Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 11/99 (11%)

Query: 11  FVVPEGDGTLVDRNAHLFTCPHENSGVHFVVPEGDGTLVDRNAHLFTCPHENSARLWFPC 70
            V    +      N  +         +   + + +  +V                LW+P 
Sbjct: 7   TVTTSVEQDSGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPY 66

Query: 71  I----DTYSEVCTWRLEFTVDENLTAVSCGDLIEVVYTP 105
           +      Y      +L           S G + +    P
Sbjct: 67  LMHERPAYLYSLEVQL-------TAQTSLGPVSDFYTLP 98


>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 5  TFCGVHFVVPEGDGTLVDRNAHLFTCPHENSGVHFVVPE 43
           + GV    PEG+          F C  E  G+ F  P+
Sbjct: 53 FWAGVELDKPEGNNNGTYDGIAYFECK-EKHGI-FAPPQ 89


>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
           {Plasmodium vivax [TaxId: 5855]}
          Length = 373

 Score = 23.8 bits (50), Expect = 8.0
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 63  SARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVY 103
           SA LW P     S  C+ +  +   ++ +    G  +++ Y
Sbjct: 83  SANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITY 123


>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 323

 Score = 23.8 bits (50), Expect = 8.2
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 63  SARLWFPCIDTYSEVCTWRLEFTVDENLTAVSCGDLIEVVY 103
           S+  W P I   S  C     F   ++ T  + G  + + Y
Sbjct: 37  SSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHY 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.467 

Gapped
Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 520,686
Number of extensions: 23330
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 12
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)