Query psy13178
Match_columns 163
No_of_seqs 131 out of 485
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:08:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0831|consensus 100.0 2.9E-50 6.3E-55 344.5 12.7 158 5-163 1-158 (334)
2 PF03982 DAGAT: Diacylglycerol 100.0 1.1E-40 2.4E-45 284.6 5.8 119 45-163 2-120 (297)
3 PLN02783 diacylglycerol O-acyl 99.5 1.8E-13 3.9E-18 118.0 9.6 134 17-162 15-152 (315)
4 cd07987 LPLAT_MGAT-like Lysoph 96.3 0.0038 8.2E-08 50.0 3.3 69 89-162 2-71 (212)
5 COG4895 Uncharacterized conser 44.8 8.3 0.00018 25.8 0.3 7 112-118 42-48 (63)
6 PF00521 DNA_topoisoIV: DNA gy 40.4 11 0.00024 33.9 0.5 22 111-132 44-66 (426)
7 PF09962 DUF2196: Uncharacteri 37.8 12 0.00026 25.4 0.2 6 112-117 42-47 (62)
8 TIGR03833 conserved hypothetic 35.6 14 0.00031 25.0 0.3 7 112-118 41-47 (62)
9 cd07992 LPLAT_AAK14816-like Ly 33.0 58 0.0013 25.6 3.5 63 87-160 8-72 (203)
10 PF10542 Vitelline_membr: Vite 31.1 27 0.00058 21.3 1.0 11 105-115 8-18 (38)
11 smart00434 TOP4c DNA Topoisome 30.7 22 0.00047 32.5 0.8 21 111-131 66-87 (445)
12 TIGR03718 R_switched_Alx integ 21.2 5.6E+02 0.012 22.4 8.5 15 81-95 156-170 (302)
13 PF05692 Myco_haema: Mycoplasm 20.7 28 0.0006 31.9 -0.5 12 91-102 127-138 (439)
No 1
>KOG0831|consensus
Probab=100.00 E-value=2.9e-50 Score=344.55 Aligned_cols=158 Identities=44% Similarity=0.915 Sum_probs=152.2
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeCCCCCCCCccccccchhHH
Q psy13178 5 GVKFAPLKVPMERRLQTFAAGMWFIILAFGGALGAWFSVYLLLYTRWYPLILLYYIWIFVDRNTCETGGRRSEWMRDWAW 84 (163)
Q Consensus 5 ~i~~apl~~p~~rrlqtlav~~w~~~~~~~~~~~~~~~~~~ll~~~~w~l~~lY~~w~~~d~~~p~~ggr~~~w~r~~~i 84 (163)
++||||+++|+|||+||+++.+|+++++.++.++.. +.+.++++++|+++.+|++|.++|+++|++|||++.|+|||.+
T Consensus 1 ~~e~~~l~~p~~rR~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~w~~~~ly~vw~~~d~~~~~~~g~~~~~~r~~~l 79 (334)
T KOG0831|consen 1 KIEWAPLGVPWERRLQTLAVLAFIFMTLILPLISFN-VPFALLFTRFWPLAILYAVWLYYDRDTPKKGGRRSNWFRNWPI 79 (334)
T ss_pred CceecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHheeccCCCCcccccHHHHHHHHHH
Confidence 589999999999999999999999998887776766 7778889999999999999999999999999999999999999
Q ss_pred HHHHHhHcCceeEEccCCCCCCceeEEecCccccchhhhhhhccCcccccccCCCCcceeeecccccchhhHHhhhhcC
Q psy13178 85 WRYYRDYFPVRLVKTTDLPSTKNYLFCVYPHGILSSGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPFSRELMHGL 163 (163)
Q Consensus 85 w~~~~~YFPi~Lvkt~~Ldp~knYifg~hPHGil~~Ga~~~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P~~Re~~l~~ 163 (163)
||+++||||++|+||+||||+||||+|+|||||+++|+++||++|+++++++||||+++++|++.+|++|++||++|++
T Consensus 80 ~k~~~~YFPi~L~kt~~l~p~~NYi~g~hPHgi~~~gaf~~f~t~~s~~~~~fPgi~~~l~tl~~~F~~P~~Re~l~~~ 158 (334)
T KOG0831|consen 80 WKWFCDYFPISLIKTAELDPEKNYIFGYHPHGILSVGAFGNFSTEATGFSKLFPGIRPKLMTLSGQFYTPFLREYLMSL 158 (334)
T ss_pred HHHHhhccceeEEeeeccCCccceEEEeccchhhccccccccceeccchhhhCCCCCHHHcccccceeccHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=100.00 E-value=1.1e-40 Score=284.65 Aligned_cols=119 Identities=52% Similarity=1.072 Sum_probs=115.6
Q ss_pred HHHhhhHHHHHHHHHHHheeeCCCCCCCCccccccchhHHHHHHHhHcCceeEEccCCCCCCceeEEecCccccchhhhh
Q psy13178 45 LLLYTRWYPLILLYYIWIFVDRNTCETGGRRSEWMRDWAWWRYYRDYFPVRLVKTTDLPSTKNYLFCVYPHGILSSGAFC 124 (163)
Q Consensus 45 ~ll~~~~w~l~~lY~~w~~~d~~~p~~ggr~~~w~r~~~iw~~~~~YFPi~Lvkt~~Ldp~knYifg~hPHGil~~Ga~~ 124 (163)
++++|++|+++++|++|+++|+++|++|||+++|+|||.+||+++||||++++||+||||+||||||+|||||+|.|+++
T Consensus 2 ~l~~t~~w~l~~ly~~w~~~d~~~p~~g~r~~~~~r~~~~w~~~~~YFp~~l~~~~~l~p~~~Yif~~hPHGvl~~g~~~ 81 (297)
T PF03982_consen 2 YLLFTSLWPLIALYLIWLYYDWDTPERGGRRWKWFRNWSVWKYFRDYFPIRLVKTADLDPDKNYIFGFHPHGVLPIGAFV 81 (297)
T ss_pred EEEhHHHHHHHHHHhhheeEeccCCCCCCcHHHHHhhchHHHhhhhccceEEEecccCCcCCceEEeeCCCccccCcchh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccccCCCCcceeeecccccchhhHHhhhhcC
Q psy13178 125 NFASNATNFRGVFPGLVSDVLTLKSHFWMPFSRELMHGL 163 (163)
Q Consensus 125 ~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P~~Re~~l~~ 163 (163)
+|+||+++|+++|||++++++|++.+|++|++||+++++
T Consensus 82 ~f~t~~~~~~~~fpg~~~~~~tl~~~f~~P~~R~~~~~~ 120 (297)
T PF03982_consen 82 NFATDATGFSKLFPGIRPHLLTLSVNFRIPFFRDFLLWL 120 (297)
T ss_pred cccccccCcchhCCCcceeEEEeccceeccccchhhhhc
Confidence 999999999999999999999999999999999999874
No 3
>PLN02783 diacylglycerol O-acyltransferase
Probab=99.48 E-value=1.8e-13 Score=117.98 Aligned_cols=134 Identities=24% Similarity=0.409 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHheeeCCCCCCCCccccccchhHHHHHHHhHcCc
Q psy13178 17 RRLQTFAAGMWFIILAFGGALGAWFSVYLLLYTRWYPLIL--LYYIWIFVDRNTCETGGRRSEWMRDWAWWRYYRDYFPV 94 (163)
Q Consensus 17 rrlqtlav~~w~~~~~~~~~~~~~~~~~~ll~~~~w~l~~--lY~~w~~~d~~~p~~ggr~~~w~r~~~iw~~~~~YFPi 94 (163)
.-++.+|+..|++.++++..++.. .++ ++++.+.+++ +.++-++...+.....|++.. + .++++.++|||+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---r-~i~~~~~~~~~~ 87 (315)
T PLN02783 15 SVLSILAVAIWLGAIHFNVALVLA--SLF-FLPSPVALTVLALLLLLMFIPAHPTSKLGRKIA---R-FICKYACAYFPV 87 (315)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH--HHH-hccchHHHHHHHHHHHHheeecCCCccHHHHHH---H-HHHHHHHHhcCe
Confidence 346899999999999977432222 222 2233333222 112224445444444444432 1 278999999999
Q ss_pred eeEEc--cCCCCCCceeEEecCccccchhhhhhhccCcccccccCCCCcceeeecccccchhhHHhhhhc
Q psy13178 95 RLVKT--TDLPSTKNYLFCVYPHGILSSGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPFSRELMHG 162 (163)
Q Consensus 95 ~Lvkt--~~Ldp~knYifg~hPHGil~~Ga~~~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P~~Re~~l~ 162 (163)
+++.+ +++|++++|||++||||+++.++ +++++ ....+|+-+.+.++.+..|++|++|+++.+
T Consensus 88 ~v~v~g~e~l~~~~~~I~~~nH~S~ldi~~-~~~~~----~~~~~p~~~~~~lak~~lf~iP~~g~~~~~ 152 (315)
T PLN02783 88 RLHVEDEEAFDPNRAYVFGYEPHSVLPIGV-IALAD----LSGFLPLPKIRALASSAVFYTPFLRHIWTW 152 (315)
T ss_pred EEEEEchhhCCCCCCEEEEECCCcchhhHH-Hhhhh----hhhccCCCchHHHhhhhhccCcHHHHHHHH
Confidence 99988 47999999999999999999987 33332 234678878899999999999999998754
No 4
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=96.31 E-value=0.0038 Score=49.98 Aligned_cols=69 Identities=32% Similarity=0.419 Sum_probs=54.5
Q ss_pred HhHcCceeEEccCCCCCCceeEEecCccccc-hhhhhhhccCcccccccCCCCcceeeecccccchhhHHhhhhc
Q psy13178 89 RDYFPVRLVKTTDLPSTKNYLFCVYPHGILS-SGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPFSRELMHG 162 (163)
Q Consensus 89 ~~YFPi~Lvkt~~Ldp~knYifg~hPHGil~-~Ga~~~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P~~Re~~l~ 162 (163)
+.||.+..++..|..|++++++.+++|+... -+.+.+.+ +...+|+...+.++.+..|..|++|+++.+
T Consensus 2 ~~~~~~~~v~g~e~lp~~~~~i~v~NH~s~~~D~~~l~~~-----~~~~~~~~~~~~la~~~~~~~p~~~~~~~~ 71 (212)
T cd07987 2 RKYFRVYEVRGLENIPDEGPALLVHPHGGLPIDGALLAAA-----FLLLFPGRLPRALADHFLFPLPGLRDLLRR 71 (212)
T ss_pred CceeeeEEEeccccCCCCCcEEEEECCcchhHHHHHHHHH-----HHHhCCCCeeEEeecccceeCccHHHHHHH
Confidence 5688885566667777788899999999998 77665533 556778888888889999999999998754
No 5
>COG4895 Uncharacterized conserved protein [Function unknown]
Probab=44.79 E-value=8.3 Score=25.80 Aligned_cols=7 Identities=57% Similarity=0.899 Sum_probs=6.0
Q ss_pred ecCcccc
Q psy13178 112 VYPHGIL 118 (163)
Q Consensus 112 ~hPHGil 118 (163)
+|||||=
T Consensus 42 ~HPHGIK 48 (63)
T COG4895 42 SHPHGIK 48 (63)
T ss_pred CCCCceE
Confidence 7999984
No 6
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=40.43 E-value=11 Score=33.89 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.8
Q ss_pred EecCccccch-hhhhhhccCccc
Q psy13178 111 CVYPHGILSS-GAFCNFASNATN 132 (163)
Q Consensus 111 g~hPHGil~~-Ga~~~f~t~~~~ 132 (163)
+|||||=-|. ++.++.|.+..+
T Consensus 44 ~YHpHGe~sl~~tiv~mAq~f~~ 66 (426)
T PF00521_consen 44 KYHPHGESSLYDTIVRMAQDFVG 66 (426)
T ss_dssp HTSTSSHHHHHHHHHHCTSTTTT
T ss_pred hhCCCcchhhhhhhhhhhhcccc
Confidence 5999998765 678888776554
No 7
>PF09962 DUF2196: Uncharacterized conserved protein (DUF2196); InterPro: IPR019240 A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895 from COG. The function is unknown.
Probab=37.83 E-value=12 Score=25.38 Aligned_cols=6 Identities=67% Similarity=1.220 Sum_probs=5.5
Q ss_pred ecCccc
Q psy13178 112 VYPHGI 117 (163)
Q Consensus 112 ~hPHGi 117 (163)
.|||||
T Consensus 42 ~HP~GI 47 (62)
T PF09962_consen 42 THPHGI 47 (62)
T ss_pred CCCCCc
Confidence 799998
No 8
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=35.61 E-value=14 Score=25.01 Aligned_cols=7 Identities=57% Similarity=0.947 Sum_probs=5.9
Q ss_pred ecCcccc
Q psy13178 112 VYPHGIL 118 (163)
Q Consensus 112 ~hPHGil 118 (163)
.|||||=
T Consensus 41 ~Hp~GIK 47 (62)
T TIGR03833 41 THPHGIK 47 (62)
T ss_pred CCCCceE
Confidence 7999983
No 9
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=32.95 E-value=58 Score=25.57 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=38.3
Q ss_pred HHHhHcC-ceeEEccCCCCCCceeEE-ecCccccchhhhhhhccCcccccccCCCCcceeeecccccchhhHHhhh
Q psy13178 87 YYRDYFP-VRLVKTTDLPSTKNYLFC-VYPHGILSSGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPFSRELM 160 (163)
Q Consensus 87 ~~~~YFP-i~Lvkt~~Ldp~knYifg-~hPHGil~~Ga~~~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P~~Re~~ 160 (163)
.++-+|. +++.-.+.+++++++|+. -|+++.+-.-+++.. .+-+.+.++.+..+..|+.+.++
T Consensus 8 ~~~~~~~~v~v~G~e~lp~~~~~I~v~NH~~s~~D~~~l~~~-----------~~~~~~~v~~~~~~~~p~~~~~~ 72 (203)
T cd07992 8 ILRIYFRRITVVGRENVPKDGPVIFLGNHPNALIDPLLLAAT-----------LRRPVRFLAKADLFKNPLIGWLL 72 (203)
T ss_pred hhhhEeeeeEEECCccCCCCCCEEEEeCCccchhhHHHHHHh-----------cCCCcEEEEEhhhccchHHHHHH
Confidence 4455554 776666778888999987 688664332222211 12245556667778888877654
No 10
>PF10542 Vitelline_membr: Vitelline membrane cysteine-rich region; InterPro: IPR013135 In Drosophila melanogaster (Fruit fly) the vitelline membrane (VM) is the first layer of the eggshell produced by the follicular epithelium. It is composed of at least four different proteins. VM proteins are similarly organised with a central highly conserved 38-amino acid domain which is flanked by unrelated regions. Since the surrounding regions have diverged significantly, it is possible that the VM domain is of key importance in VM protein structure [, ]. The VM domain contains three highly conserved cysteines.
Probab=31.07 E-value=27 Score=21.31 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=9.0
Q ss_pred CCceeEEecCc
Q psy13178 105 TKNYLFCVYPH 115 (163)
Q Consensus 105 ~knYifg~hPH 115 (163)
-|||+|.+.|-
T Consensus 8 pknY~FSCqp~ 18 (38)
T PF10542_consen 8 PKNYVFSCQPV 18 (38)
T ss_pred CcceeEecccc
Confidence 48999998873
No 11
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=30.73 E-value=22 Score=32.47 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=16.1
Q ss_pred EecCccccch-hhhhhhccCcc
Q psy13178 111 CVYPHGILSS-GAFCNFASNAT 131 (163)
Q Consensus 111 g~hPHGil~~-Ga~~~f~t~~~ 131 (163)
+|||||=.|+ +|.++.|.+.+
T Consensus 66 ~YHpHGd~Siy~aiV~mAQ~f~ 87 (445)
T smart00434 66 KYHPHGDSSLYDAIVRMAQDFS 87 (445)
T ss_pred CCCCCchHHHHHHHHHHhcccc
Confidence 4999999987 57777776643
No 12
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=21.18 E-value=5.6e+02 Score=22.38 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=11.3
Q ss_pred hhHHHHHHHhHcCce
Q psy13178 81 DWAWWRYYRDYFPVR 95 (163)
Q Consensus 81 ~~~iw~~~~~YFPi~ 95 (163)
+....|..++.+|++
T Consensus 156 ~~~~~~~~~~~~~v~ 170 (302)
T TIGR03718 156 NNPLVRLLRRVLPVT 170 (302)
T ss_pred ccHHHHHHHhhcCCC
Confidence 345778889999874
No 13
>PF05692 Myco_haema: Mycoplasma haemagglutinin; InterPro: IPR008692 This family consists of several haemagglutinin sequences from Mycoplasma gallisepticum. The major plasma membrane proteins, pMGAs, of Mycoplasma gallisepticum are cell adhesin (hemagglutinin) molecules. It has been shown that the genetic determinants that code for the haemagglutinins are organised into a large family of genes and that only one of these genes is predominately expressed in any given strain [, ].
Probab=20.74 E-value=28 Score=31.94 Aligned_cols=12 Identities=58% Similarity=1.115 Sum_probs=10.6
Q ss_pred HcCceeEEccCC
Q psy13178 91 YFPVRLVKTTDL 102 (163)
Q Consensus 91 YFPi~Lvkt~~L 102 (163)
|||.||||+.|=
T Consensus 127 YFPYKLVks~D~ 138 (439)
T PF05692_consen 127 YFPYKLVKSSDS 138 (439)
T ss_pred EeeehhhcccCc
Confidence 899999999764
Done!