Query psy13178
Match_columns 163
No_of_seqs 131 out of 485
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 22:08:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ab4a_ e.11.1.1 (A:) DNA Gyra 31.9 6.1 0.00044 32.8 0.8 19 112-130 48-67 (493)
2 d1tq5a1 b.82.1.12 (A:1-231) Hy 26.7 2.8 0.0002 31.0 -2.1 48 66-116 5-60 (231)
3 d1vqod1 d.77.1.1 (D:10-174) Ri 26.7 15 0.0011 26.3 2.1 41 79-119 66-106 (165)
4 d2hkja1 a.156.1.3 (A:229-306) 8.7 37 0.0027 20.4 0.2 18 112-130 3-20 (78)
5 d1ug8a_ d.68.7.1 (A:) Poly(A)- 8.5 1.8E+02 0.013 18.2 3.7 39 73-112 35-74 (87)
6 d1h6fa_ b.2.5.4 (A:) T-box pro 8.3 1.8E+02 0.013 20.4 4.0 20 92-111 32-51 (184)
7 d2fs2a1 d.38.1.5 (A:1-131) Phe 7.3 64 0.0047 20.8 0.9 65 88-155 18-88 (131)
8 d1wh2a_ d.76.1.1 (A:) Hypothet 6.5 47 0.0034 20.6 -0.1 35 60-98 19-53 (78)
9 d1r0ma2 d.54.1.1 (A:6-132) N-a 6.4 15 0.0011 23.6 -2.9 20 1-20 3-22 (127)
10 d1wlua1 d.38.1.5 (A:2-117) Phe 6.1 43 0.0031 21.1 -0.6 42 112-154 31-72 (116)
No 1
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=31.94 E-value=6.1 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.2
Q ss_pred ecCccccch-hhhhhhccCc
Q psy13178 112 VYPHGILSS-GAFCNFASNA 130 (163)
Q Consensus 112 ~hPHGil~~-Ga~~~f~t~~ 130 (163)
|||||=-|+ +|.++.|.+.
T Consensus 48 yHpHGd~s~~~~iv~maq~~ 67 (493)
T d1ab4a_ 48 YHPHGDSAVYDTIVRMAQPF 67 (493)
T ss_dssp TCCSCHHHHHHHHHHTTCTT
T ss_pred cCCCcHHHHHHHHHHHHHhh
Confidence 999998886 6788877664
No 2
>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}
Probab=26.67 E-value=2.8 Score=31.00 Aligned_cols=48 Identities=21% Similarity=0.624 Sum_probs=35.3
Q ss_pred CCCCCCCCccccccchhHHHHHHHhHcC--------ceeEEccCCCCCCceeEEecCcc
Q psy13178 66 RNTCETGGRRSEWMRDWAWWRYYRDYFP--------VRLVKTTDLPSTKNYLFCVYPHG 116 (163)
Q Consensus 66 ~~~p~~ggr~~~w~r~~~iw~~~~~YFP--------i~Lvkt~~Ldp~knYifg~hPHG 116 (163)
++..++|.-...|++.+.-+. |++||- ++++.++.++|+.- |+-|||-
T Consensus 5 r~~~~rg~~~~~wl~s~~~Fs-f~~y~dp~~~~fg~l~v~ndd~~~pg~g--f~~HpH~ 60 (231)
T d1tq5a1 5 RKANERGHANHGWLDSWHTFS-FANYYDPNFMGFSALRVINDDVIEAGQG--FGTHPHK 60 (231)
T ss_dssp ECGGGSEEEECSSEEEEESSC-BTTBCCSSCSCBTTEEEEEEEEECTTCE--EEEEEEC
T ss_pred EeHHHCCCCCCCCCcceEeee-cCCccCccccCCCceEEEecceecCCCC--CCCCCcC
Confidence 355667777778988776553 567775 46677888888776 9999994
No 3
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=26.65 E-value=15 Score=26.27 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=30.9
Q ss_pred cchhHHHHHHHhHcCceeEEccCCCCCCceeEEecCccccc
Q psy13178 79 MRDWAWWRYYRDYFPVRLVKTTDLPSTKNYLFCVYPHGILS 119 (163)
Q Consensus 79 ~r~~~iw~~~~~YFPi~Lvkt~~Ldp~knYifg~hPHGil~ 119 (163)
+|.-..|..+....++...+..++|.+.||=||..-|-++|
T Consensus 66 LRg~~m~~FL~rll~~~~~~~k~FD~~GN~sfGi~e~~~FP 106 (165)
T d1vqod1 66 LRDEMAEEFLQTALPLAELATSQFDDTGNFSFGVEEHTEFP 106 (165)
T ss_dssp ECTHHHHHHHHTTGGGSCCCSTTBCSSSCEEEC--------
T ss_pred EechhHHHHHHHHhccccCCccccCCceeEEeCchhheecc
Confidence 78888999999999999999999999999999999998876
No 4
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=8.75 E-value=37 Score=20.41 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=12.6
Q ss_pred ecCccccchhhhhhhccCc
Q psy13178 112 VYPHGILSSGAFCNFASNA 130 (163)
Q Consensus 112 ~hPHGil~~Ga~~~f~t~~ 130 (163)
-||||+ ..+.+.....+.
T Consensus 3 PhP~~v-~~~~l~~~l~~~ 20 (78)
T d2hkja1 3 PHPYGV-DREEIKILINNL 20 (78)
T ss_dssp CCGGGC-CHHHHHHHHHTC
T ss_pred CCCCCC-CHHHHHHHHHhc
Confidence 499996 787776655543
No 5
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.45 E-value=1.8e+02 Score=18.20 Aligned_cols=39 Identities=8% Similarity=0.102 Sum_probs=30.0
Q ss_pred CccccccchhHHHHHHHhHcCceeEEcc-CCCCCCceeEEe
Q psy13178 73 GRRSEWMRDWAWWRYYRDYFPVRLVKTT-DLPSTKNYLFCV 112 (163)
Q Consensus 73 gr~~~w~r~~~iw~~~~~YFPi~Lvkt~-~Ldp~knYifg~ 112 (163)
..-+.+.|++ |+..+..=||-+++.+. ..+.+.+||.+.
T Consensus 35 epCngFqRKL-IYQtl~~kfp~kI~vet~~~Enk~r~Ivv~ 74 (87)
T d1ug8a_ 35 DPCTGFQRKL-IYQTLSWKYPKGIHVETLETDKKERHIVIS 74 (87)
T ss_dssp CCCCSHHHHH-HHHHHHHHSSSSEEEEEECCSSSCSEEEEE
T ss_pred CCCcHHHHHH-HHHHHHHhCCCcceeeeeeecCCceEEEEE
Confidence 3445677776 78888999999997665 777889998853
No 6
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.30 E-value=1.8e+02 Score=20.40 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=13.3
Q ss_pred cCceeEEccCCCCCCceeEE
Q psy13178 92 FPVRLVKTTDLPSTKNYLFC 111 (163)
Q Consensus 92 FPi~Lvkt~~Ldp~knYifg 111 (163)
||.==++=.-|||++.|.+.
T Consensus 32 FP~l~~~vsGLdp~~~Y~v~ 51 (184)
T d1h6fa_ 32 FPPFKVRCSGLDKKAKYILL 51 (184)
T ss_dssp SSCCEEEEESCCSSSEEEEE
T ss_pred CceeEEEEeccCCCcceEEE
Confidence 66544555578888888754
No 7
>d2fs2a1 d.38.1.5 (A:1-131) Phenylacetic acid degradation protein PaaI {Escherichia coli [TaxId: 562]}
Probab=7.31 E-value=64 Score=20.82 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=39.5
Q ss_pred HHhHcCceeEEcc------CCCCCCceeEEecCccccchhhhhhhccCcccccccCCCCcceeeecccccchhh
Q psy13178 88 YRDYFPVRLVKTT------DLPSTKNYLFCVYPHGILSSGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPF 155 (163)
Q Consensus 88 ~~~YFPi~Lvkt~------~Ldp~knYifg~hPHGil~~Ga~~~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P~ 155 (163)
+.+..-+++++-+ .++.+.+.. +|.|++--|+..+++..+.+..-...+-......++.+|.-|.
T Consensus 18 ~~~~LG~~i~~~~~g~~~~~~~v~~~~~---n~~G~vhGG~l~al~D~a~~~a~~~~~~~~~t~~~~i~fl~p~ 88 (131)
T d2fs2a1 18 CAKALGIDIISMDEGFAVVTMTVTAQML---NGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPG 88 (131)
T ss_dssp HHHHHTCEEEEEETTEEEEEEECCGGGB---CTTSBBCHHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEECSCC
T ss_pred HHHhcCCEEEEEeCCEEEEEEEcCHHHC---CCCCcCcCeehhhHHHHHHHHHHHhcCCceEEEEeeeeEeccc
Confidence 4455667766432 244444444 7899999999888877766544443443344445566666664
No 8
>d1wh2a_ d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.49 E-value=47 Score=20.58 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=21.0
Q ss_pred HHheeeCCCCCCCCccccccchhHHHHHHHhHcCceeEE
Q psy13178 60 IWIFVDRNTCETGGRRSEWMRDWAWWRYYRDYFPVRLVK 98 (163)
Q Consensus 60 ~w~~~d~~~p~~ggr~~~w~r~~~iw~~~~~YFPi~Lvk 98 (163)
.|.|.|.+--.+|.-.+.=+++| +-.+||+-.|..
T Consensus 19 ~W~Y~D~~g~~qGPfs~~~M~~W----~~~GyF~~~l~V 53 (78)
T d1wh2a_ 19 NWLYKDPQGLVQGPFSLTQLKAW----SDAEYFTKQFRV 53 (78)
T ss_dssp CEEEECTTSCEEEEECHHHHHHH----HTTTSSCSCCEE
T ss_pred EEEEECCCCCCcCCcCHHHHHHH----HHCCCCCCCeEE
Confidence 47888865555665555444333 125799977743
No 9
>d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.41 E-value=15 Score=23.55 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=9.0
Q ss_pred CccccccccCCCCCHHHHHH
Q psy13178 1 MNLFGVKFAPLKVPMERRLQ 20 (163)
Q Consensus 1 m~~~~i~~apl~~p~~rrlq 20 (163)
||+-.++..+.++|+++..+
T Consensus 3 ~kI~~ie~~~~~~Pl~~p~~ 22 (127)
T d1r0ma2 3 FKIEAAEIVVARLPLKFRFE 22 (127)
T ss_dssp EECCEEEEEEEEEEBC----
T ss_pred ceEEEEEEEEEeecccCCEE
Confidence 45555555555555555433
No 10
>d1wlua1 d.38.1.5 (A:2-117) Phenylacetic acid degradation protein PaaI {Thermus thermophilus [TaxId: 274]}
Probab=6.12 E-value=43 Score=21.09 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=0.0
Q ss_pred ecCccccchhhhhhhccCcccccccCCCCcceeeecccccchh
Q psy13178 112 VYPHGILSSGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMP 154 (163)
Q Consensus 112 ~hPHGil~~Ga~~~f~t~~~~f~~lfPgi~~~~ltl~~~F~~P 154 (163)
.+|||++--|+..+.+..+.+.. ...+...-...++..|.-|
T Consensus 31 ~n~~G~~hGG~i~tl~D~~~~~a-~~~~~~~vT~~l~i~fl~p 72 (116)
T d1wlua1 31 LNLHGTAHGGFLYALADSAFALA-SNTRGPAVALSCRMDYFRP 72 (116)
T ss_dssp BCTTSSBCHHHHHHHHHHHHHHH-HHTTSCEEEEEEEEEECSC
T ss_pred cCCCCCCcCeeEEEEehhhhhhh-hhccCceEEEEEEEEEccc
Done!