RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13178
         (163 letters)



>gnl|CDD|112781 pfam03982, DAGAT, Diacylglycerol acyltransferase.  The terminal
           step of triacylglycerol (TAG) formation is catalyzed by
           the enzyme diacylglycerol acyltransferase (DAGAT).
          Length = 297

 Score =  143 bits (363), Expect = 6e-43
 Identities = 58/122 (47%), Positives = 83/122 (68%), Gaps = 2/122 (1%)

Query: 44  YLLLYTRWYPLILLYYIWIFVDRNTCETGGRRSEWMRDWAWWRYYRDYFPVRLVKTTDLP 103
           ++L +T  + L++LY +W+F D N+ + GG RS W R+W  W+++ +YFPV+L KT +LP
Sbjct: 1   FVLFFTPQWSLLVLYALWLFYDWNSPKRGGYRSNWARNWRIWKWFANYFPVKLHKTAELP 60

Query: 104 STKNYLFCVYPHGILSSGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPFSRE--LMH 161
             +NYLF  +PHGILS GAF NF++NAT F   FPG+  ++ TL   F+ PF RE  L  
Sbjct: 61  PNRNYLFGYHPHGILSVGAFSNFSTNATGFMDKFPGIRPNICTLAGQFYTPFRREILLSL 120

Query: 162 GL 163
           GL
Sbjct: 121 GL 122


>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
           (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
            Lysophospholipid acyltransferase (LPLAT) superfamily
           member: acyltransferases of de novo and remodeling
           pathways of glycerophospholipid biosynthesis which
           catalyze the incorporation of an acyl group from either
           acylCoAs or acyl-acyl carrier proteins (acylACPs) into
           acceptors such as glycerol 3-phosphate, dihydroxyacetone
           phosphate or lyso-phosphatidic acid. Included in this
           suubgroup are such LPLATs as 2-acylglycerol
           O-acyltransferase (MGAT), and similar proteins.
          Length = 212

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 88  YRDYFPVRLVKTTDLPSTKNYLFCVYPHGILS-SGAFCNFASNATNFRGVFPGLVSDVLT 146
           +R YF V  V+  +    +     V+PHG L   GA    A     F  +FPG +   L 
Sbjct: 1   HRKYFRVYEVRGLENIPDEGPALLVHPHGGLPIDGALLAAA-----FLLLFPGRLPRALA 55

Query: 147 LKSHFWMPFSRELMHGL 163
               F +P  R+L+  L
Sbjct: 56  DHFLFPLPGLRDLLRRL 72


>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
          Length = 315

 Score = 30.7 bits (70), Expect = 0.26
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 11/78 (14%)

Query: 86  RYYRDYFPVRLVKT--TDLPSTKNYLFCVYPHGIL--SSGAFCNFASNATNFRGVFPGLV 141
           +Y   YFPVRL           + Y+F   PH +L     A  + +       G  P   
Sbjct: 79  KYACAYFPVRLHVEDEEAFDPNRAYVFGYEPHSVLPIGVIALADLS-------GFLPLPK 131

Query: 142 SDVLTLKSHFWMPFSREL 159
              L   + F+ PF R +
Sbjct: 132 IRALASSAVFYTPFLRHI 149


>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
          Length = 644

 Score = 30.8 bits (69), Expect = 0.29
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 47  LYTRWYPLILLYYIWIFVDRNTCETGGR 74
           ++  W+P++LL  +WIF  R     GG+
Sbjct: 102 IFISWFPMLLLIGVWIFFMRQMQGGGGK 129


>gnl|CDD|226844 COG4420, COG4420, Predicted membrane protein [Function unknown].
          Length = 191

 Score = 29.7 bits (67), Expect = 0.58
 Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 5/40 (12%)

Query: 22 FAAGMWFIILAFGGALGAWFSVYLLLYTRW----YPLILL 57
          F     FI+      L  W  + L L        YP ILL
Sbjct: 54 FGGSWAFILTFTL-LLLLWIVLNLFLVPGLAWDPYPFILL 92


>gnl|CDD|148049 pfam06210, DUF1003, Protein of unknown function (DUF1003).  This
          family consists of several hypothetical bacterial
          proteins of unknown function.
          Length = 108

 Score = 27.1 bits (61), Expect = 2.1
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 5/36 (13%)

Query: 26 MWFIILAFGGALGAWFSVYLLLYTRW----YPLILL 57
            FIIL F   L  W  + L          YP ILL
Sbjct: 4  WTFIIL-FTVVLVLWILLNLGAPPGLAFDPYPFILL 38


>gnl|CDD|183208 PRK11572, PRK11572, copper homeostasis protein CutC; Provisional.
          Length = 248

 Score = 28.0 bits (63), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 137 FPGLVSDVLTLKSHFWMPFSRELMH 161
           FPGLV+ VL +  H  MP  R++M 
Sbjct: 87  FPGLVTGVLDVDGHVDMPRMRKIMA 111


>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
           uptake antiporter, P-type ATPase, alpha subunit.  This
           model describes the P-type ATPases responsible for the
           exchange of either protons or sodium ions for potassium
           ions across the plasma membranes of eukaryotes. Unlike
           most other P-type ATPases, members of this subfamily
           require a beta subunit for activity. This model
           encompasses eukaryotes and consists of two functional
           types, a Na/K antiporter found widely distributed in
           eukaryotes and a H/K antiporter found only in
           vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
           have been characterized as Type IIC based on a published
           phylogenetic analysis. Sequences from Blastocladiella
           emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
           elegans (GP|2315419, GP|6671808 and PIR|T31763) and
           Drosophila melanogaster (GP|7291424) score below trusted
           cutoff, apparently due to long branch length (excessive
           divergence from the last common ancestor) as evidenced
           by a phylogenetic tree. Experimental evidence is needed
           to determine whether these sequences represent ATPases
           with conserved function. Aside from fragments, other
           sequences between trusted and noise appear to be
           bacterial ATPases of unclear lineage, but most likely
           calcium pumps [Energy metabolism, ATP-proton motive
           force interconversion].
          Length = 997

 Score = 27.4 bits (61), Expect = 3.8
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 6   VKFAPLKVPMERRLQTFAAGM--WFII--LAFGGALGAWFS----------VYLLLYTRW 51
           V++A L +   RR   F  GM    +I  L    AL A+ S          +Y L  T W
Sbjct: 903 VQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWW 962

Query: 52  YPLILLYYIWIFV 64
           +     Y + IFV
Sbjct: 963 FC-AFPYSLLIFV 974


>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel.  This
           family of ion channels contains 10 or 12 transmembrane
           helices. Each protein forms a single pore. It has been
           shown that some members of this family form homodimers.
           In terms of primary structure, they are unrelated to
           known cation channels or other types of anion channels.
           Three ClC subfamilies are found in animals. ClC-1 is
           involved in setting and restoring the resting membrane
           potential of skeletal muscle, while other channels play
           important parts in solute concentration mechanisms in
           the kidney. These proteins contain two pfam00571
           domains.
          Length = 345

 Score = 27.1 bits (61), Expect = 4.3
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 26  MWFIILA-FGGALGAWFSVYLLLYTRWYPLILLYYIWIFV 64
             FI+L    G LGA F   LL   R +  +      +  
Sbjct: 162 PLFILLGILCGLLGALFVRLLLKVERLFRRLKKLPPILRP 201


>gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional.
          Length = 240

 Score = 27.1 bits (60), Expect = 4.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 136 VFPGLVSDVLTLKSHFWMP 154
           VFPG V+  LT K+ F MP
Sbjct: 169 VFPGFVATPLTDKNTFAMP 187


>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
           and metabolism].
          Length = 498

 Score = 27.2 bits (61), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 17  RRLQTFAAGMWFIILAFGGALGAWFS 42
             L++F   MWF+ +A G  LG   +
Sbjct: 425 PALKSFIMAMWFLTVAAGQTLGGQVA 450


>gnl|CDD|179484 PRK02854, PRK02854, primosomal protein DnaI; Provisional.
          Length = 179

 Score = 26.7 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 109 LFCVYPHGILS---SGAFCNFASNATNFRGVFPGLVSDVLTLKSHFWMPFS 156
                   +L+    G    FA+NA  F  V P  ++++L L+     P S
Sbjct: 15  ALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGS 65


>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter.  This family of proteins is
           involved in active transport of cyanate. The cyanate
           transporter in E.Coli is used to transport cyanate into
           the cell so it can be metabolized into ammonia and
           bicarbonate. This process is used to overcome the
           toxicity of environmental cyanate [Transport and binding
           proteins, Other].
          Length = 355

 Score = 26.6 bits (59), Expect = 7.2
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 25  GMWFIILAFGGALGAWFSVYLLLY--TRWYPLILLY 58
           G++ + L  G AL A  +V L  +    W   +  +
Sbjct: 125 GLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160


>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase. 
          Length = 222

 Score = 26.0 bits (58), Expect = 8.2
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 12  KVPMERRLQTFAAGMWFIILAFGGALGAWFSVYLLLYTRWYPLILLYYIWIFV 64
           K P++R L   A  +  I+LA    +   F ++      +    LL  + + V
Sbjct: 137 KTPLQRLLDKLAKILVPIVLALAILV---FLIWFFRGGDFL-EALLRALAVLV 185


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.144    0.515 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,715,459
Number of extensions: 796346
Number of successful extensions: 1440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1431
Number of HSP's successfully gapped: 99
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (24.9 bits)