RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13178
         (163 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.028
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 29/156 (18%)

Query: 11  LKVPMERR-----LQTFAAGMWFIILAFGG--ALGAWFSVYLLLYTRWYPLILLYYIWIF 63
            K P +++      +    G   ++  FGG      +F     LY  ++ L+      I 
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD---LIK 189

Query: 64  VDRNTCETGGRRSEWMRDWAWWRYYRDYFPVR--LVKTTDLPSTKNYLFCV---YP-HGI 117
               T     R +         + +     +   L   ++ P   +YL  +    P  G+
Sbjct: 190 FSAETLSELIRTTL-----DAEKVFTQGLNILEWLENPSNTPDK-DYLLSIPISCPLIGV 243

Query: 118 LSSGAFCNFAS----NATNFRGVFPGL---VSDVLT 146
           +    +   A          R    G       ++T
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279


>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
           S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
           thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
          Length = 486

 Score = 28.6 bits (64), Expect = 0.91
 Identities = 6/43 (13%), Positives = 12/43 (27%)

Query: 52  YPLILLYYIWIFVDRNTCETGGRRSEWMRDWAWWRYYRDYFPV 94
           + +  L        R+  ++   +S W      W       P 
Sbjct: 75  HDMEALKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPE 117


>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
           merolae}
          Length = 632

 Score = 26.3 bits (58), Expect = 5.5
 Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 1/38 (2%)

Query: 27  WFIIL-AFGGALGAWFSVYLLLYTRWYPLILLYYIWIF 63
            + IL A  G LGA F   +                 F
Sbjct: 237 LYAILGALMGVLGALFIRCVRSIYELRMRHYPGTNRYF 274


>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane,
           membrane, transmembrane, transport, ATP- binding,
           hydrolase, nucleotide-binding, periplasm; HET: 1PE;
           2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
          Length = 326

 Score = 25.7 bits (57), Expect = 8.1
 Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 1/36 (2%)

Query: 23  AAGMWFI-ILAFGGALGAWFSVYLLLYTRWYPLILL 57
               W + + A  GAL     +            LL
Sbjct: 111 QLPNWALGLSAIAGALIITLILLRFARRHLSTSRLL 146


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.144    0.515 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,697,308
Number of extensions: 149312
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 21
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.3 bits)