RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13178
         (163 letters)



>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 202

 Score = 26.2 bits (57), Expect = 1.8
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 10/109 (9%)

Query: 29  IILAFGGALGAWFSVYLLLYTRWYPLILLYYIWIFVDRNTCETGGRRSEWMRDWAWWRYY 88
           I     G+     +V   +          Y +               +  +     +RY 
Sbjct: 41  IFCCRSGSAADTQAVADAVT---------YQLGFHSIELNEPPLVHTAASLFKEMCYRYR 91

Query: 89  RDYFPVRLVKTTDLPSTKNYLFCVYPHGILSSGAFCNFASNATNFRGVF 137
            D     ++   D P     ++ V   G++   +F    S ++   G  
Sbjct: 92  EDLMAGIIIAGWD-PQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYV 139


>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate
           reductase ArgC {Thermotoga maritima [TaxId: 2336]}
          Length = 163

 Score = 24.0 bits (51), Expect = 8.3
 Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 5/50 (10%)

Query: 63  FVDRNTCETGGRRSEWMRDWAWWR-----YYRDYFPVRLVKTTDLPSTKN 107
            V            +  +           +Y++   V ++     PSTK 
Sbjct: 86  LVPMTRGILSTIYVKTDKSLEEIHEAYLEFYKNEPFVHVLPMGIYPSTKW 135


>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
           10090]}
          Length = 118

 Score = 23.9 bits (51), Expect = 8.7
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 78  WMRDWAWWRYYRDYFPVRLVKTTDLPSTKNYLFCVYPHGILSSGAFC 124
            +  ++ +  Y   F  +   T D  S+  Y+         S+  +C
Sbjct: 50  LISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYC 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.515 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,093
Number of extensions: 31496
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 17
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.0 bits)