BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13179
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/336 (73%), Positives = 284/336 (84%), Gaps = 2/336 (0%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 16 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 75
Query: 72 QTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMI 131
TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P +E+EK+Y+ KLNMI
Sbjct: 76 NTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 135
Query: 132 LVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKH 191
LVQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ KAKH
Sbjct: 136 LVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKH 195
Query: 192 LKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEK 251
LKDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI K
Sbjct: 196 LKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 255
Query: 252 FLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMG 311
FLNVP+FRNV+LKCLTEIA VS S YE + LFT TM QL+ M P++ NI+ AY+ G
Sbjct: 256 FLNVPMFRNVSLKCLTEIAGVS--VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNG 313
Query: 312 KDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
KD EQNFIQNL++FLCTFLKEHG L+EK+ E L
Sbjct: 314 KDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 515 bits (1326), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/336 (73%), Positives = 284/336 (84%), Gaps = 2/336 (0%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73
Query: 72 QTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMI 131
TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P +E+EK+Y+ KLNMI
Sbjct: 74 NTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMI 133
Query: 132 LVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKH 191
LVQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ K+KH
Sbjct: 134 LVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKSKH 193
Query: 192 LKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEK 251
LKDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI K
Sbjct: 194 LKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYK 253
Query: 252 FLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMG 311
FLNVP+FRNV+LKCLTEIA VS S YE +V LFT TM QL+ M P++ NI+ AY+ G
Sbjct: 254 FLNVPMFRNVSLKCLTEIAGVS--VSQYEEQFVTLFTLTMMQLKQMLPLNTNIRLAYSNG 311
Query: 312 KDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
KD EQNFIQNL++FLCTFLKEH LIEK+ E L
Sbjct: 312 KDDEQNFIQNLSLFLCTFLKEHDQLIEKRLNLRETL 347
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 323 bits (828), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 4 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 63
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 64 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 123
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 124 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 183
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 184 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 243
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 244 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 303
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 304 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 340
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/337 (46%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 322 bits (824), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/337 (45%), Positives = 232/337 (68%), Gaps = 3/337 (0%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ LV
Sbjct: 66 KFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HLK
Sbjct: 126 QILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLK 185
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+SM +F QIF LC VL+ +++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF+
Sbjct: 186 NSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM 245
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQLQM-MFPMDINIKQAYAM 310
P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 246 TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYAN 305
Query: 311 GKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
+Q+F+Q+LAMFL T+L + +L+E + E+L
Sbjct: 306 ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL 342
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/317 (51%), Positives = 216/317 (68%), Gaps = 4/317 (1%)
Query: 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVI 85
LD V Y G G +QKAAQ L KE PDAW VD IL ++ +QTKF ALQ+L+ VI
Sbjct: 17 LDATVRAFYEGRGEQQKAAQAALNQFKEDPDAWLMVDEILSRATYEQTKFLALQVLDNVI 76
Query: 86 KTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQ 145
TRWK LPREQC GI+ ++V I++ SS+ E+L + LNKLN++LV VLK+EWP NW
Sbjct: 77 MTRWKVLPREQCQGIRNFVVQYILQCSSSEESLRTHRTLLNKLNLVLVSVLKQEWPHNWP 136
Query: 146 SFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFT 205
+FI +IV A ++ S+C+NNM+IL+LLSEEVFD+S Q+T K ++LK +MC +FS IF
Sbjct: 137 TFINEIVSACHSSLSVCENNMIILRLLSEEVFDYSADQMTSTKTRNLKSTMCAEFSMIFQ 196
Query: 206 LCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKC 265
LCQ +L++++ SL+ ATLETLLRF NWIPLGYIFET LI TL +FL VP FRNVTL+C
Sbjct: 197 LCQEILNSATQPSLIKATLETLLRFCNWIPLGYIFETPLIDTLRTRFLEVPEFRNVTLQC 256
Query: 266 LTEIAAVS----GTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQN 321
LTEI + G Y+ + +FT + + + P+ +++K Y +Q FIQN
Sbjct: 257 LTEIGGLQTGGPGQPHTYDEQLIKMFTEVLTTISNIIPLQMDLKATYPNSNSRDQEFIQN 316
Query: 322 LAMFLCTFLKEHGSLIE 338
LA+FL +F H LIE
Sbjct: 317 LALFLTSFFTMHLPLIE 333
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 22/188 (11%)
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
+ + LQILE V+K RW + R + +K ++ LI + T LE E + L+ I+V
Sbjct: 64 RHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI--ANGTLNILEEENHIKDALSRIVV 121
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
+++KREWP++W + ++ SK E+ + M IL L+E+V F L + + ++
Sbjct: 122 EMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQ--TLPPQRRRDIQ 179
Query: 194 DSMCLQFSQIFTLC------------QFVLDNS------SNASLVGATLETLLRFLNWIP 235
++ +IF+ Q D S +N + A L TL +++W+
Sbjct: 180 QTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS 239
Query: 236 LGYIFETN 243
+ +I N
Sbjct: 240 MSHITAEN 247
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 19 QKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYAL 78
+ +DI L+ V Y Q E LT + P AW +++ +Q+ +F+
Sbjct: 2 EPIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGA 61
Query: 79 QILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMIL----VQ 134
L + W +P E + +K+ I+ I++ + P K+ LN+L + L V
Sbjct: 62 ITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGP------KIVLNRLCISLGAYIVH 115
Query: 135 VLKREWP 141
+L EWP
Sbjct: 116 MLG-EWP 121
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 9 EQFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE 66
QF +FN+ IT+LD++ C++ EQ+ +E L K W+ +++ LE
Sbjct: 423 RQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KRTVSLWSYINSQLE 480
Query: 67 YSSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 481 DFTNPLYGSYSNHVLYPVASMR 502
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K W+ +++ LE
Sbjct: 496 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KRTVSLWSYINSQLED 553
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 554 FTNPLYGSYSNHVLYPVASMR 574
>pdb|4GLK|A Chain A, Structure And Activity Of Abiq, A Lactococcal Anti-phage
Endoribonuclease Belonging To The Type-iii
Toxin-antitoxin System
Length = 172
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 148 IPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLC 207
IP + K + Q ++ +K +SE++ + S ++ KA H KD L+FS F L
Sbjct: 101 IPLPLDLKKPKHKMMQKQLIYMKSISEKIENKS--EVVYRKAAHEKDGYYLKFSCDFKLL 158
Query: 208 Q 208
+
Sbjct: 159 E 159
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 7 PNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTAL-KEHPDAWTRVDTIL 65
P+E F L Q+ D V Y G + K E LTAL K+HPD VD ++
Sbjct: 69 PDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVI 128
>pdb|3IBV|A Chain A, Karyopherin Cytosolic State
pdb|3IBV|B Chain B, Karyopherin Cytosolic State
pdb|3ICQ|T Chain T, Karyopherin Nuclear State
pdb|3ICQ|U Chain U, Karyopherin Nuclear State
Length = 980
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 140 WPKNWQSFIPDIVG--ASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSM- 196
+P NW F + G A+ + + +L + +E+ D + + + KD++
Sbjct: 122 YPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD---SLVLKTDVQIQKDNLV 178
Query: 197 --CLQFSQIFTLCQFVLD------NSSNASLVGATLETLLRFLNWIPLGYIFETNLITTL 248
++ + + + FV + N+ N VG L+ ++++WI + I + L
Sbjct: 179 KDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCM-NL 237
Query: 249 IEKFLNVPLFRNVTLKCLTEI 269
+ FL + R + +TEI
Sbjct: 238 LYSFLQIEELRCAACETMTEI 258
>pdb|1QWK|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Hypothetical 35.2 Kda Protein (Aldose Reductase Family
Member)
Length = 317
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR-VDTILEYSSNQQTKFYALQILEQV 84
L N VE G+G Q + EV+TA+K A R +DT Y + + ++LE+
Sbjct: 10 LSNGVEMPVIGLGTWQSSPAEVITAVKTAVKAGYRLIDTASVYQNEEAIGTAIKELLEEG 69
Query: 85 IKTR 88
+ R
Sbjct: 70 VVKR 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,716,525
Number of Sequences: 62578
Number of extensions: 365103
Number of successful extensions: 915
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 26
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)