Query psy13179
Match_columns 352
No_of_seqs 230 out of 1233
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:09:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5101 CRM1 Importin beta-rel 100.0 2.4E-62 5.2E-67 463.3 30.1 336 11-346 1-340 (1053)
2 KOG2020|consensus 100.0 2.7E-45 5.8E-50 375.5 26.9 322 14-340 2-325 (1041)
3 KOG2021|consensus 100.0 1.3E-36 2.8E-41 293.5 27.4 302 24-339 3-316 (980)
4 PF08389 Xpo1: Exportin 1-like 99.9 5.6E-25 1.2E-29 183.1 14.3 144 122-266 2-148 (148)
5 KOG2022|consensus 99.9 1.6E-19 3.4E-24 178.6 27.1 305 22-340 5-340 (982)
6 KOG2171|consensus 99.8 1.6E-18 3.5E-23 176.4 27.5 227 22-274 2-238 (1075)
7 KOG2081|consensus 99.8 3.2E-18 7E-23 163.2 21.9 277 42-341 2-286 (559)
8 KOG1992|consensus 99.8 1.7E-16 3.8E-21 156.2 26.7 290 22-339 3-332 (960)
9 KOG1991|consensus 99.8 4.6E-16 1E-20 156.2 26.6 240 21-276 1-277 (1010)
10 KOG1410|consensus 99.7 6.4E-14 1.4E-18 135.6 26.3 245 23-275 4-288 (1082)
11 KOG2023|consensus 99.5 1.3E-13 2.9E-18 133.4 15.9 243 24-291 13-262 (885)
12 KOG1993|consensus 99.5 1.2E-12 2.5E-17 129.1 21.0 172 26-211 2-181 (978)
13 COG5657 CSE1 CAS/CSE protein i 99.4 1.5E-11 3.3E-16 123.2 20.7 213 32-264 12-250 (947)
14 COG5656 SXM1 Importin, protein 99.3 5.9E-10 1.3E-14 109.7 23.0 199 24-233 3-211 (970)
15 PF03810 IBN_N: Importin-beta 99.3 1.2E-11 2.7E-16 90.9 8.7 66 44-109 1-76 (77)
16 KOG1241|consensus 99.3 9.6E-11 2.1E-15 115.5 16.5 220 28-274 5-249 (859)
17 KOG2274|consensus 99.2 8.8E-09 1.9E-13 103.5 23.7 144 25-177 5-160 (1005)
18 COG5215 KAP95 Karyopherin (imp 98.9 1.7E-07 3.7E-12 90.4 19.3 217 33-273 14-252 (858)
19 PF01602 Adaptin_N: Adaptin N 94.9 4.3 9.3E-05 40.5 20.0 121 35-172 53-179 (526)
20 PF12460 MMS19_C: RNAPII trans 92.0 13 0.00027 36.3 19.5 191 68-273 201-396 (415)
21 PF01602 Adaptin_N: Adaptin N 90.2 21 0.00046 35.5 22.5 71 203-274 415-486 (526)
22 KOG2171|consensus 89.2 16 0.00034 39.5 15.4 101 199-301 115-218 (1075)
23 PF05918 API5: Apoptosis inhib 89.1 27 0.00059 35.3 23.1 279 22-332 21-346 (556)
24 PF11864 DUF3384: Domain of un 88.9 26 0.00056 34.8 18.8 51 55-110 27-77 (464)
25 PRK09687 putative lyase; Provi 88.9 19 0.0004 33.1 18.7 218 24-271 23-250 (280)
26 PF13251 DUF4042: Domain of un 88.2 4.2 9E-05 34.9 8.9 78 196-274 95-177 (182)
27 PF08064 UME: UME (NUC010) dom 87.0 10 0.00022 29.3 9.8 50 242-297 55-104 (107)
28 PF01603 B56: Protein phosphat 86.8 32 0.00069 33.5 18.0 225 21-272 130-371 (409)
29 smart00802 UME Domain in UVSB 85.2 14 0.00031 28.6 9.7 49 243-297 56-104 (107)
30 PF13646 HEAT_2: HEAT repeats; 83.7 2.1 4.5E-05 31.2 4.3 56 24-80 31-86 (88)
31 PF05536 Neurochondrin: Neuroc 83.1 56 0.0012 33.1 15.6 162 54-274 3-171 (543)
32 PF13646 HEAT_2: HEAT repeats; 82.2 5.9 0.00013 28.7 6.3 56 27-84 2-58 (88)
33 KOG2023|consensus 81.4 12 0.00027 38.1 9.7 131 126-274 372-508 (885)
34 KOG1824|consensus 81.0 85 0.0019 33.8 19.7 138 122-274 188-364 (1233)
35 PF08767 CRM1_C: CRM1 C termin 80.4 7.7 0.00017 36.4 7.8 104 220-335 44-153 (319)
36 PF10508 Proteasom_PSMB: Prote 80.3 67 0.0015 32.2 21.1 224 35-275 171-424 (503)
37 PF08167 RIX1: rRNA processing 80.2 16 0.00035 30.6 9.0 77 63-151 32-109 (165)
38 KOG1967|consensus 79.7 92 0.002 33.3 15.8 219 34-272 784-1025(1030)
39 PF08506 Cse1: Cse1; InterPro 79.7 35 0.00076 32.8 12.1 135 191-341 20-183 (370)
40 PTZ00429 beta-adaptin; Provisi 78.3 96 0.0021 32.8 25.7 134 25-175 69-209 (746)
41 cd00197 VHS_ENTH_ANTH VHS, ENT 78.1 30 0.00065 26.8 9.8 91 40-134 17-112 (115)
42 PF14225 MOR2-PAG1_C: Cell mor 76.9 59 0.0013 29.6 16.2 72 201-275 187-258 (262)
43 PF08167 RIX1: rRNA processing 76.4 44 0.00096 27.9 12.3 115 145-275 24-147 (165)
44 cd00256 VATPase_H VATPase_H, r 75.9 83 0.0018 30.8 20.0 51 44-95 89-139 (429)
45 PF03378 CAS_CSE1: CAS/CSE pro 75.7 29 0.00062 34.1 10.4 118 203-339 72-196 (435)
46 PF02985 HEAT: HEAT repeat; I 75.0 5.7 0.00012 23.0 3.4 26 245-271 2-29 (31)
47 cd03567 VHS_GGA VHS domain fam 74.9 44 0.00096 27.2 10.8 64 26-89 2-70 (139)
48 KOG2956|consensus 71.5 1.1E+02 0.0024 30.2 14.0 57 216-272 419-478 (516)
49 PF03224 V-ATPase_H_N: V-ATPas 68.8 1E+02 0.0022 28.7 16.3 157 56-235 105-272 (312)
50 PF08568 Kinetochor_Ybp2: Unch 68.1 1.5E+02 0.0033 30.6 14.9 60 34-93 452-514 (633)
51 KOG1991|consensus 66.5 1.9E+02 0.0042 31.2 19.3 206 70-292 317-554 (1010)
52 PF12348 CLASP_N: CLASP N term 65.6 92 0.002 27.1 16.9 174 68-272 18-207 (228)
53 cd00020 ARM Armadillo/beta-cat 64.8 58 0.0013 24.5 9.0 70 55-135 48-118 (120)
54 PF12717 Cnd1: non-SMC mitotic 64.1 88 0.0019 26.4 14.8 78 67-157 35-112 (178)
55 cd03561 VHS VHS domain family; 63.1 77 0.0017 25.4 9.4 91 41-136 18-111 (133)
56 COG5240 SEC21 Vesicle coat com 62.3 1.9E+02 0.0041 29.6 17.0 52 216-269 500-553 (898)
57 PF00790 VHS: VHS domain; Int 60.2 90 0.002 25.2 12.1 64 25-88 5-73 (140)
58 KOG1241|consensus 59.2 2.4E+02 0.0052 29.7 20.4 80 191-271 627-711 (859)
59 PF12830 Nipped-B_C: Sister ch 58.7 67 0.0014 27.4 8.2 77 26-102 10-90 (187)
60 KOG0168|consensus 57.8 1.8E+02 0.0038 31.1 12.0 73 202-275 211-287 (1051)
61 KOG0212|consensus 57.4 1.9E+02 0.0042 29.3 11.8 164 132-302 111-304 (675)
62 cd03565 VHS_Tom1 VHS domain fa 55.9 1.1E+02 0.0024 24.9 9.7 63 27-89 3-71 (141)
63 PF09862 DUF2089: Protein of u 55.7 51 0.0011 25.8 6.2 75 89-168 31-111 (113)
64 cd07316 terB_like_DjlA N-termi 54.5 80 0.0017 23.7 7.4 38 92-132 68-105 (106)
65 PF10521 DUF2454: Protein of u 53.2 1.8E+02 0.0039 26.6 11.2 76 196-272 113-204 (282)
66 cd03568 VHS_STAM VHS domain fa 53.0 1.3E+02 0.0027 24.7 11.2 103 27-136 2-109 (144)
67 COG5096 Vesicle coat complex, 52.7 3.1E+02 0.0067 29.1 14.4 133 26-175 57-196 (757)
68 cd00020 ARM Armadillo/beta-cat 52.1 91 0.002 23.3 7.5 72 56-138 7-79 (120)
69 PF12348 CLASP_N: CLASP N term 51.7 1.6E+02 0.0035 25.5 12.7 108 26-138 92-207 (228)
70 PF12717 Cnd1: non-SMC mitotic 49.5 1.6E+02 0.0034 24.8 10.2 61 26-87 27-93 (178)
71 PF11698 V-ATPase_H_C: V-ATPas 45.8 1.1E+02 0.0025 24.1 6.9 68 22-90 41-119 (119)
72 PF12719 Cnd3: Nuclear condens 43.5 2.6E+02 0.0057 25.6 15.9 69 205-275 67-147 (298)
73 PF12755 Vac14_Fab1_bd: Vacuol 42.5 77 0.0017 24.0 5.3 31 243-274 27-59 (97)
74 PF09492 Pec_lyase: Pectic aci 41.6 1.7E+02 0.0036 27.1 8.3 82 121-204 57-142 (289)
75 PF10508 Proteasom_PSMB: Prote 40.8 3.9E+02 0.0084 26.8 26.1 230 22-275 117-370 (503)
76 PF05804 KAP: Kinesin-associat 38.2 5E+02 0.011 27.4 19.4 213 21-270 120-359 (708)
77 smart00802 UME Domain in UVSB 38.2 1.9E+02 0.0041 22.4 7.9 72 164-238 8-89 (107)
78 KOG1993|consensus 37.7 4.1E+02 0.0089 28.3 10.9 95 41-138 504-606 (978)
79 KOG2022|consensus 35.9 5.9E+02 0.013 27.5 17.1 73 200-273 506-578 (982)
80 KOG2199|consensus 35.3 4.3E+02 0.0092 25.6 11.8 67 25-91 8-79 (462)
81 KOG1020|consensus 35.0 2.6E+02 0.0056 31.9 9.5 72 197-270 811-883 (1692)
82 PF12397 U3snoRNP10: U3 small 34.5 2.2E+02 0.0048 22.1 7.8 73 200-273 4-76 (121)
83 PF01465 GRIP: GRIP domain; I 34.4 62 0.0013 20.8 3.2 35 95-138 3-37 (46)
84 PF06371 Drf_GBD: Diaphanous G 34.4 2.1E+02 0.0046 23.8 7.6 54 216-270 129-186 (187)
85 PF12783 Sec7_N: Guanine nucle 34.4 2.7E+02 0.0058 23.0 8.5 64 70-138 35-103 (168)
86 cd05506 Bromo_plant1 Bromodoma 33.2 2.1E+02 0.0045 21.4 7.1 92 41-140 2-99 (99)
87 KOG4535|consensus 32.3 1.7E+02 0.0036 29.2 6.9 137 132-274 24-182 (728)
88 COG1043 LpxA Acyl-[acyl carrie 32.2 79 0.0017 28.3 4.4 47 22-68 209-255 (260)
89 PF05327 RRN3: RNA polymerase 32.2 5.6E+02 0.012 26.1 13.6 34 77-110 71-104 (563)
90 KOG0166|consensus 31.7 5.5E+02 0.012 25.9 15.0 105 26-139 68-183 (514)
91 KOG1086|consensus 30.9 4.3E+02 0.0093 26.0 9.3 67 22-88 5-76 (594)
92 PF11698 V-ATPase_H_C: V-ATPas 30.9 1.1E+02 0.0025 24.1 4.7 106 24-140 4-118 (119)
93 cd07313 terB_like_2 tellurium 30.0 2.3E+02 0.0051 21.1 9.6 37 92-131 67-103 (104)
94 KOG1248|consensus 28.6 8.6E+02 0.019 27.1 23.5 212 37-276 667-902 (1176)
95 KOG3682|consensus 28.5 7.1E+02 0.015 26.1 12.0 55 216-275 521-576 (930)
96 PF10521 DUF2454: Protein of u 28.3 1.9E+02 0.004 26.5 6.5 124 142-272 115-254 (282)
97 cd08818 CARD_MDA5_1 Caspase ac 28.2 1.8E+02 0.004 21.7 5.1 48 90-152 29-77 (88)
98 smart00288 VHS Domain present 28.1 3.1E+02 0.0068 21.8 13.9 62 27-88 2-68 (133)
99 PF13513 HEAT_EZ: HEAT-like re 28.0 1.2E+02 0.0026 19.6 3.9 51 218-269 2-55 (55)
100 PF04510 DUF577: Family of unk 27.7 3.8E+02 0.0083 22.7 15.0 65 99-173 3-70 (174)
101 PLN03076 ARF guanine nucleotid 27.0 1.1E+03 0.024 27.9 20.7 109 60-178 1186-1303(1780)
102 PF12719 Cnd3: Nuclear condens 26.9 5E+02 0.011 23.8 19.1 243 24-294 26-283 (298)
103 PF04826 Arm_2: Armadillo-like 26.3 4.9E+02 0.011 23.5 15.7 143 21-174 9-163 (254)
104 PF04336 DUF479: Protein of un 26.2 51 0.0011 25.3 2.1 54 82-145 2-56 (106)
105 PF04388 Hamartin: Hamartin pr 26.1 7.7E+02 0.017 25.8 11.2 131 201-350 69-206 (668)
106 cd00864 PI3Ka Phosphoinositide 25.7 3.8E+02 0.0082 22.0 9.5 58 24-83 39-97 (152)
107 PF12530 DUF3730: Protein of u 25.3 4.8E+02 0.01 23.1 17.3 127 40-174 17-151 (234)
108 KOG2274|consensus 25.1 6.4E+02 0.014 27.3 10.0 89 201-294 529-622 (1005)
109 PF11864 DUF3384: Domain of un 25.0 4.9E+02 0.011 25.7 9.2 138 201-340 27-172 (464)
110 cd00872 PI3Ka_I Phosphoinositi 24.9 4.2E+02 0.0092 22.3 9.0 13 98-110 85-97 (171)
111 smart00755 Grip golgin-97, Ran 24.7 1.1E+02 0.0023 19.8 3.0 33 96-138 3-35 (46)
112 PF05674 DUF816: Baculovirus p 24.7 44 0.00096 27.7 1.5 26 327-352 96-126 (171)
113 KOG0168|consensus 24.3 2E+02 0.0043 30.7 6.3 84 188-273 538-630 (1051)
114 KOG0946|consensus 23.9 9.2E+02 0.02 25.9 20.8 81 7-88 59-153 (970)
115 PF08064 UME: UME (NUC010) dom 23.5 3.4E+02 0.0074 20.7 7.9 72 164-238 8-89 (107)
116 PLN03076 ARF guanine nucleotid 23.4 1.3E+03 0.028 27.5 20.3 113 56-177 1133-1256(1780)
117 KOG4368|consensus 23.3 1.4E+02 0.0031 30.2 4.8 57 8-65 89-146 (757)
118 cd03569 VHS_Hrs_Vps27p VHS dom 23.3 4.1E+02 0.0088 21.6 11.8 63 26-88 5-72 (142)
119 COG2854 Ttg2D ABC-type transpo 22.6 4.2E+02 0.0092 23.1 7.1 67 40-110 33-105 (202)
120 TIGR03504 FimV_Cterm FimV C-te 22.5 1.2E+02 0.0026 19.3 2.9 16 35-50 28-43 (44)
121 PF10083 DUF2321: Uncharacteri 22.4 3.6E+02 0.0079 22.4 6.3 23 88-110 94-116 (158)
122 KOG1967|consensus 21.6 2.3E+02 0.005 30.5 6.1 19 256-274 967-985 (1030)
123 PF12460 MMS19_C: RNAPII trans 21.6 7.4E+02 0.016 23.9 21.2 114 41-156 19-145 (415)
124 KOG1059|consensus 21.4 9.9E+02 0.021 25.3 22.1 145 120-273 193-367 (877)
125 cd00870 PI3Ka_III Phosphoinosi 20.8 5.1E+02 0.011 21.7 8.7 12 99-110 93-104 (166)
No 1
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-62 Score=463.33 Aligned_cols=336 Identities=43% Similarity=0.751 Sum_probs=316.5
Q ss_pred HHHhhcccccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccC
Q psy13179 11 FKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWK 90 (352)
Q Consensus 11 ~~~~l~~~~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~ 90 (352)
||.||+|+++.|++.|+++|..+|.|++.++++|+++|.+||+.||+|..+.+||+.|..|+.+|.|+++|++.|+++|+
T Consensus 1 MEgIL~fd~dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWk 80 (1053)
T COG5101 1 MEGILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWK 80 (1053)
T ss_pred CcchhhcccccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHH
Q psy13179 91 ALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILK 170 (352)
Q Consensus 91 ~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~ 170 (352)
.+|.+.|.+||+++++.++..+.|+......+.+++|+..++++|+|++||++||+|++++++.++++-..|+|+|.+|+
T Consensus 81 llp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivLk 160 (1053)
T COG5101 81 LLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLK 160 (1053)
T ss_pred hCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHHH
Confidence 99999999999999999999988877777778888999999999999999999999999999999999899999999999
Q ss_pred hHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHH
Q psy13179 171 LLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIE 250 (352)
Q Consensus 171 ~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~ 250 (352)
.|+|||++|+.+++|+.|.+.+|+.|...|++||.+|.++|+.++++++++++|+.+.+|+.|+|+++|+++++++++..
T Consensus 161 lLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~~ 240 (1053)
T COG5101 161 LLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLE 240 (1053)
T ss_pred HhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhcCchhhHHHHHHHHHHHHhccCCcc---chHHHHHHHHHHHHHHHH-hcCCCCccHHHHhccCCcchHHHHHHHHHHH
Q psy13179 251 KFLNVPLFRNVTLKCLTEIAAVSGTYS---NYENVYVALFTTTMAQLQ-MMFPMDINIKQAYAMGKDTEQNFIQNLAMFL 326 (352)
Q Consensus 251 ~~l~~~~~~~~al~cL~ei~~~~~~~~---~~~~~~~~~f~~~l~~l~-~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l 326 (352)
++.+.|++|..+++||+||++.+.-|. .-...++.+|+.++.... ...|..+++.+.|++.+..++.|+++||.|+
T Consensus 241 ~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL 320 (1053)
T COG5101 241 HFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFL 320 (1053)
T ss_pred HhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHH
Confidence 999999999999999999999986542 123567778888777665 6788899999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCccHHH
Q psy13179 327 CTFLKEHGSLIEKKSTPEEM 346 (352)
Q Consensus 327 ~~f~~~~~~~le~~~~~~~~ 346 (352)
|+|++.|.+++|++++.+.+
T Consensus 321 ~s~~~~~~~lLE~~e~~e~l 340 (1053)
T COG5101 321 SSLYEVYISLLEAREMAENL 340 (1053)
T ss_pred HHHHHHHHHHhcChhHHHHH
Confidence 99999999999998766444
No 2
>KOG2020|consensus
Probab=100.00 E-value=2.7e-45 Score=375.55 Aligned_cols=322 Identities=49% Similarity=0.828 Sum_probs=299.3
Q ss_pred hhcccccCCHHHHHHHHHHHhc-CChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCC
Q psy13179 14 LLDFNQKLDITLLDNIVECMYT-GMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKAL 92 (352)
Q Consensus 14 ~l~~~~~~di~~L~~~v~~~~~-~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l 92 (352)
++| +.+.|++.+++++..++. +++++|.+|+++|++||..|++|..|..||+.++++.+||||+++|++.|+++|+.+
T Consensus 2 ~~~-~~~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~ 80 (1041)
T KOG2020|consen 2 LLD-DNKLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSL 80 (1041)
T ss_pred Ccc-chhHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccC
Confidence 567 778899999999999888 788899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhH
Q psy13179 93 PREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLL 172 (352)
Q Consensus 93 ~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L 172 (352)
|.++|.++|+++++.+...+.+.+..+..+.+++|++.++++|+|++||+.||+|++|+.+.++.++..|++++.||+.|
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 99999999999999999876654444567888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhh
Q psy13179 173 SEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKF 252 (352)
Q Consensus 173 ~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~ 252 (352)
+||++++++..++++|...++..+...|..++++|.++..+++.. ++.++|.++.+|++|||.+++++++.+..++..+
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~-~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ 239 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE-LLSATLETLLRFLEWIPLGYIFETNILELLLNKF 239 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhc
Confidence 999999998888898888889989999999999999999887777 9999999999999999999999999988887899
Q ss_pred cCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchH-HHHHHHHHHHHHHHH
Q psy13179 253 LNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQ-NFIQNLAMFLCTFLK 331 (352)
Q Consensus 253 l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~-~f~~~l~~~l~~f~~ 331 (352)
++.+.+|..|++||+++++++.. -|+.+...+|+..+.++. .+|.+.+..+.|..+...|+ .|+++++.|+++|++
T Consensus 240 ln~~~~r~~al~CL~ei~s~~~~--~~~~~~~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~ 316 (1041)
T KOG2020|consen 240 LNAPELRNNALSCLTELLSRKRS--IYERKTVPMFNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFE 316 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhcccc--chhHHhHHHHHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 678888999999988877 67788999999999999999 999999999999999
Q ss_pred HhhhhhcCC
Q psy13179 332 EHGSLIEKK 340 (352)
Q Consensus 332 ~~~~~le~~ 340 (352)
.|.+++|..
T Consensus 317 ~~~~lle~~ 325 (1041)
T KOG2020|consen 317 QHIALLESS 325 (1041)
T ss_pred HHHHHHcCc
Confidence 999999983
No 3
>KOG2021|consensus
Probab=100.00 E-value=1.3e-36 Score=293.50 Aligned_cols=302 Identities=19% Similarity=0.325 Sum_probs=247.1
Q ss_pred HHHHHHHHHHhcC--ChHhHHHHHHHHHHHhcCCChHHHHHHHhccC-CchHHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q psy13179 24 TLLDNIVECMYTG--MGVEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTRWKALPREQCDGI 100 (352)
Q Consensus 24 ~~L~~~v~~~~~~--~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i 100 (352)
+.+||+|.+...| ++.-|++|-++++++|.+|++|.+|.+++..+ .++.+||||+|+|.+.++.+.++.+..+.+.+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 4689999999998 56679999999999999999999999998654 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhhhHHHH-HHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhh--hhHHHHHHHhHHHHhh
Q psy13179 101 KKYIVGLIIKTSSTPETLEREKMYL-NKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESL--CQNNMVILKLLSEEVF 177 (352)
Q Consensus 101 k~~ll~~l~~~~~~~~~~~~~~~~~-~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~--~~~~l~iL~~L~eEv~ 177 (352)
|..++.|+....-++... ..|.|+ ||++++++.++..+||+.|++||.|+......+... .+..+++|.++..|+.
T Consensus 83 R~sv~swlk~qvl~ne~~-~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEia 161 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQT-KLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIA 161 (980)
T ss_pred HHHHHHHHHHHHhCcccC-CCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhh
Confidence 999999998764443322 235666 999999999999999999999999999988766543 6778999999999999
Q ss_pred ccC--CCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHhcC---CChHHHHHHHHHHHhccccCcchhhcccchHHHHHHh
Q psy13179 178 DFS--GGQLTQAKAKHLKDSMCLQ-FSQIFTLCQFVLDNS---SNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEK 251 (352)
Q Consensus 178 ~~~--~~~l~~~r~~~lk~~l~~~-~~~i~~l~~~iL~~~---~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~ 251 (352)
|.+ ++.....|++.+||+||++ +|+|.+.|++++... .+|+++..+|+|+++|+|||+++.|.+..+++++ ++
T Consensus 162 d~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLL-y~ 240 (980)
T KOG2021|consen 162 DQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLL-YK 240 (980)
T ss_pred hccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHH-HH
Confidence 854 3323346889999999976 799999999998753 3789999999999999999999999999999998 89
Q ss_pred hcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHHH
Q psy13179 252 FLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLK 331 (352)
Q Consensus 252 ~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~~ 331 (352)
+++.+++|.+||+|+.+|++|+|+|-.-. .+..+.+++.+ .+- ........|.+|.++++.++++|+.
T Consensus 241 fl~ieelR~aac~cilaiVsKkMkP~dKL-~lln~L~q~l~----lfg-------~~s~dq~~d~df~e~vskLitg~gv 308 (980)
T KOG2021|consen 241 FLNIEELRIAACNCILAIVSKKMKPMDKL-ALLNMLNQTLE----LFG-------YHSADQMDDLDFWESVSKLITGFGV 308 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHH----HHh-------hhccccccCchHHHHHHHHHhhcce
Confidence 99999999999999999999999974211 22233332222 110 0011122567899999999999988
Q ss_pred HhhhhhcC
Q psy13179 332 EHGSLIEK 339 (352)
Q Consensus 332 ~~~~~le~ 339 (352)
+.....+.
T Consensus 309 el~~i~s~ 316 (980)
T KOG2021|consen 309 ELTIIISQ 316 (980)
T ss_pred eeehhHhh
Confidence 85544443
No 4
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.93 E-value=5.6e-25 Score=183.14 Aligned_cols=144 Identities=30% Similarity=0.607 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHH
Q psy13179 122 KMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFS 201 (352)
Q Consensus 122 ~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~ 201 (352)
+.+++|+|.+++.|++++||++||+|++++++..++++.++++++.+|+.++||+.++.+...+..|++.+++.+++..+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 44569999999999999999999999999999999888889999999999999999865556778899999999999999
Q ss_pred HHHHHHHHHHhcCCC---hHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHHHHHHHH
Q psy13179 202 QIFTLCQFVLDNSSN---ASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCL 266 (352)
Q Consensus 202 ~i~~l~~~iL~~~~~---~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~~al~cL 266 (352)
.++.++.++++.... +++...+|+|+++|++|+|++.+.++++++.+ +.+++++.+++.|++||
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~-~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLI-FQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHH-HHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHH-HHHcCCHHHHHHHHHhC
Confidence 999999999987643 89999999999999999999999999999997 78899999999999997
No 5
>KOG2022|consensus
Probab=99.86 E-value=1.6e-19 Score=178.65 Aligned_cols=305 Identities=16% Similarity=0.226 Sum_probs=213.4
Q ss_pred CHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q psy13179 22 DITLLDNIVECMYTG-MGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGI 100 (352)
Q Consensus 22 di~~L~~~v~~~~~~-~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i 100 (352)
+|+.++.++..+|++ +.+....+++||++.|.+|++|...+++++..+.+++|||||.+|..+|+++|+.+++++++++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 789999999999997 4557889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccC--h-----hhhhHHHHHHHhHH
Q psy13179 101 KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTN--E-----SLCQNNMVILKLLS 173 (352)
Q Consensus 101 k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~--~-----~~~~~~l~iL~~L~ 173 (352)
|..++..+....+ .++.+++|++..++.++.+.-|+.||+.+.+++..++.. + ..|...+..|+.++
T Consensus 85 ~~klf~~l~~~~g------~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p 158 (982)
T KOG2022|consen 85 KLKLFLILSRFAG------GPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMP 158 (982)
T ss_pred HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCc
Confidence 9999999988643 356677999999999999999999999999999988652 2 24556677888788
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC--ChH-----HHHHHHHHHHhccccCcchhhcccchHH
Q psy13179 174 EEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSS--NAS-----LVGATLETLLRFLNWIPLGYIFETNLIT 246 (352)
Q Consensus 174 eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~--~~~-----l~~~~L~~l~~~l~Wi~~~~i~~~~ll~ 246 (352)
+| +...+++..|+..++..+......++.+.-.+++... .++ ....+++|++.|+..+.....-=..+++
T Consensus 159 ~e---~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~ 235 (982)
T KOG2022|consen 159 AE---FQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQ 235 (982)
T ss_pred Hh---hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHH
Confidence 87 4445677888889999999888888887777776543 233 3467899999988766543211011222
Q ss_pred HHH---H-hhcCc---------hhhHHHHHHHHHHHHhccCCc--cchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccC
Q psy13179 247 TLI---E-KFLNV---------PLFRNVTLKCLTEIAAVSGTY--SNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMG 311 (352)
Q Consensus 247 ~l~---~-~~l~~---------~~~~~~al~cL~ei~~~~~~~--~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~ 311 (352)
.++ . .+.+. -.-.+.|-+|+.+.+..-..| .+|...+..+......-++++.- ..+...+.
T Consensus 236 ~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~----~~~~~e~~ 311 (982)
T KOG2022|consen 236 VLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSG----KIQEEENA 311 (982)
T ss_pred HHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHH----HHHHHhCC
Confidence 221 1 00000 001122333444433332222 23444343444433333332210 00222223
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhh-hhcCC
Q psy13179 312 KDTEQNFIQNLAMFLCTFLKEHGS-LIEKK 340 (352)
Q Consensus 312 ~~~~~~f~~~l~~~l~~f~~~~~~-~le~~ 340 (352)
+.. ++=+..+....++++++|+. +++..
T Consensus 312 d~~-~e~i~~~~~i~v~~~En~l~~lid~~ 340 (982)
T KOG2022|consen 312 DAS-EEEIVTFLAITVSSVENHLPTLIDCA 340 (982)
T ss_pred Cch-hHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 222 34445688889999999976 66654
No 6
>KOG2171|consensus
Probab=99.84 E-value=1.6e-18 Score=176.43 Aligned_cols=227 Identities=18% Similarity=0.300 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
|.+.|+++++.+.+|||++|++|++.|+..-.++..-.....++..+.++++|.+|+..+++.+.+.|+.++.+.|++||
T Consensus 2 ~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik 81 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK 81 (1075)
T ss_pred chhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 66789999999999999999999999996555555777778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccC
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFS 180 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~ 180 (352)
+.++..+.+ +..+.+++|+|.++++|++.+.|+.||+.++-+.+..++. ++.++.++.||..+++-+..
T Consensus 82 s~lL~~~~~--------E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-- 151 (1075)
T KOG2171|consen 82 SSLLEIIQS--------ETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-- 151 (1075)
T ss_pred HHHHHHHHh--------ccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc--
Confidence 999999987 4577888999999999999999999999999999999764 47789999999999974222
Q ss_pred CCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchh-hc------ccchHHHHHHhhc
Q psy13179 181 GGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGY-IF------ETNLITTLIEKFL 253 (352)
Q Consensus 181 ~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~-i~------~~~ll~~l~~~~l 253 (352)
. +..+++.+..++.+.+...+++ +...+++++.+|....+.+. .+ -|.++..+ ....
T Consensus 152 -~-------------~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl-~~~i 215 (1075)
T KOG2171|consen 152 -T-------------LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVL-QEVI 215 (1075)
T ss_pred -c-------------cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHh-Hhhh
Confidence 1 2233455777788888776666 88889999999987775111 11 12233332 3333
Q ss_pred --CchhhHHHHHHHHHHHHhccC
Q psy13179 254 --NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 254 --~~~~~~~~al~cL~ei~~~~~ 274 (352)
++......+++||.|++....
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhch
Confidence 345567889999999997653
No 7
>KOG2081|consensus
Probab=99.81 E-value=3.2e-18 Score=163.15 Aligned_cols=277 Identities=17% Similarity=0.257 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhh
Q psy13179 42 KAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLERE 121 (352)
Q Consensus 42 ~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~ 121 (352)
..|.+||.+||+++++|.+|..+|....+.++..|++|+++++|++..+.+|+.+-..+|+.+++.+..... ..
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~------~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHD------HP 75 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHh------CC
Confidence 469999999999999999999999888899999999999999999999999999999999999999987642 23
Q ss_pred HHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHH
Q psy13179 122 KMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFS 201 (352)
Q Consensus 122 ~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~ 201 (352)
+.++++++.+++.++.+. | .|.+.+.|+++..++.+......+.+|+.+|||+.+.... ....|+.++.+.+....+
T Consensus 76 ~~i~tQL~vavA~Lal~~-~-~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~-~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P-EWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLT-VGANRRHEFIDELAAQVS 152 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H-hhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhh-hhhhhHHHHHHHHHHhHH
Confidence 367799999999999995 4 8999999999998876655567889999999998875432 335688888888999999
Q ss_pred HHHHHHHHHHhcCC--ChHHHHHHHHHHHhccc--cCcchhhccc-chHHHHHHhhcCchhhHHHHHHHHHHHHhccCCc
Q psy13179 202 QIFTLCQFVLDNSS--NASLVGATLETLLRFLN--WIPLGYIFET-NLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTY 276 (352)
Q Consensus 202 ~i~~l~~~iL~~~~--~~~l~~~~L~~l~~~l~--Wi~~~~i~~~-~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~~ 276 (352)
.++..+..+|+.++ +......+|+|+++|.. =.|.+.+.+. .++..+ +..+++..+.+.|.+|++++.+....+
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~-F~sl~~~~lhe~At~cic~ll~~~~~~ 231 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLA-FRSLSDDELHEEATECICALLYCSLDR 231 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHH-HHHcccchhhHHHHHHHHHHHHHhhhh
Confidence 99999999998753 35788999999999877 4788888877 788887 677889999999999999998775443
Q ss_pred cc---hHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcCCC
Q psy13179 277 SN---YENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKS 341 (352)
Q Consensus 277 ~~---~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~~~~~~~le~~~ 341 (352)
.. +... +|.. ..++|+..+... -.+|.+-..+++.+++..++-|...+-.++
T Consensus 232 ~~~~~~~~~---l~~~-----v~~L~~~~~~a~-----~~~d~d~~~a~~RIFtel~eaf~~~i~~np 286 (559)
T KOG2081|consen 232 SEGLPLAAI---LFIG-----VIILETAFHLAM-----AGEDLDKNEAICRIFTELGEAFVVLISTNP 286 (559)
T ss_pred hccCchhHH---Hhcc-----ccccchHHHHhh-----cccCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 21 2221 1111 112332221111 122333456788888888888876665543
No 8
>KOG1992|consensus
Probab=99.77 E-value=1.7e-16 Score=156.22 Aligned_cols=290 Identities=18% Similarity=0.282 Sum_probs=202.2
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCC-chHHHHHHHHHHHHHHhhccC-------CCC
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSS-NQQTKFYALQILEQVIKTRWK-------ALP 93 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~-~~~vrffal~~L~~~I~~~W~-------~l~ 93 (352)
|.+.|.+.+....+|+++.|+.||+.|++.+.+++.-.....++.+++ ++++|..|+..+|+.|+++|. .+.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~ 82 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKII 82 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccc
Confidence 567778888888888899999999999999999888888888887765 899999999999999999995 588
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHH
Q psy13179 94 REQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLS 173 (352)
Q Consensus 94 ~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~ 173 (352)
+++|+.||.-|+..+.+ .+..+..+++.++..|+++|||+.||++++|+++..++++-...++ +|.. .
T Consensus 83 ~~~~e~ikslIv~lMl~---------s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~g--VL~t-a 150 (960)
T KOG1992|consen 83 EEDREQIKSLIVTLMLS---------SPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVING--VLVT-A 150 (960)
T ss_pred hhHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHH--HHHH-H
Confidence 89999999999999975 3455669999999999999999999999999999998776555555 4443 3
Q ss_pred HHhhccCCCcc-cH---HHHHHHHHHHHHhHHHHHHHHHHHHhcC-CChHHHHH----HHHHHHhc--cccCcchhhccc
Q psy13179 174 EEVFDFSGGQL-TQ---AKAKHLKDSMCLQFSQIFTLCQFVLDNS-SNASLVGA----TLETLLRF--LNWIPLGYIFET 242 (352)
Q Consensus 174 eEv~~~~~~~l-~~---~r~~~lk~~l~~~~~~i~~l~~~iL~~~-~~~~l~~~----~L~~l~~~--l~Wi~~~~i~~~ 242 (352)
+-++...+... +. ...+..-+.+.+.+..+|.-.++....+ ++...++. .+-+.+-| +..-|+..+|++
T Consensus 151 hsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEd 230 (960)
T KOG1992|consen 151 HSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFED 230 (960)
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHh
Confidence 44665322211 11 2234455677788888888888777654 23332222 22222233 455688888886
Q ss_pred c---hHHHHHHhhcC--c-------------hhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccH
Q psy13179 243 N---LITTLIEKFLN--V-------------PLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINI 304 (352)
Q Consensus 243 ~---ll~~l~~~~l~--~-------------~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~ 304 (352)
+ |+..+ .+++. + ..++...|+.++-.+ .+|++.+..+...+++.++.++-. +
T Consensus 231 nm~~wM~~F-~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~------~kYeEef~~fl~~fv~~~W~LL~~-~-- 300 (960)
T KOG1992|consen 231 NMKTWMGAF-HKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYA------TKYEEEFQPFLPDFVTATWNLLVS-T-- 300 (960)
T ss_pred hHHHHHHHH-HHHHhccCcccccCcccccHHHHHHHHHHHHHHHHH------HhhHHHHHhhHHHHHHHHHHHHHh-c--
Confidence 4 77775 66663 2 234445555544333 468888888888888877765421 1
Q ss_pred HHHhccCCcchHH-HHHHHHHHHHHHHHH-hhh-hhcC
Q psy13179 305 KQAYAMGKDTEQN-FIQNLAMFLCTFLKE-HGS-LIEK 339 (352)
Q Consensus 305 ~~~~~~~~~~~~~-f~~~l~~~l~~f~~~-~~~-~le~ 339 (352)
+++.-.+ .+.+--.||+++.+. |.+ ++++
T Consensus 301 ------s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~ 332 (960)
T KOG1992|consen 301 ------SPDTKYDYLVSKALQFLTSVSRRPHYAELFEG 332 (960)
T ss_pred ------CCCccHHHHHHHHHHHHHHHHhhhhhHhhhcc
Confidence 1111122 334555677776665 333 5554
No 9
>KOG1991|consensus
Probab=99.76 E-value=4.6e-16 Score=156.20 Aligned_cols=240 Identities=18% Similarity=0.302 Sum_probs=189.5
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccC-CchHHHHHHHHHHHHHHhhccCC--------
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTRWKA-------- 91 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I~~~W~~-------- 91 (352)
||.+.+-+++.+..+|++..|+.||+.|+++++.|+....+.+|.... -+..||..|+..|||+|.+.|+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 577889999999999998899999999999999999999999997554 46678999999999999999974
Q ss_pred -CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHH
Q psy13179 92 -LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVIL 169 (352)
Q Consensus 92 -l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL 169 (352)
+++++|..+|+.|+..+.+ .+..++.++..++..|++.|||.+||++++-+...+++++ .+...+|.+|
T Consensus 81 ~I~e~dk~~irenIl~~iv~---------~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l 151 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQ---------VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCL 151 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHh---------CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHH
Confidence 6899999999999999986 3667779999999999999999999999999999998876 3455678888
Q ss_pred HhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CChHHHHHHHHHHHhcccc-Ccchhhcccc---
Q psy13179 170 KLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNS--SNASLVGATLETLLRFLNW-IPLGYIFETN--- 243 (352)
Q Consensus 170 ~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~--~~~~l~~~~L~~l~~~l~W-i~~~~i~~~~--- 243 (352)
..|+. ..++.+ ..++..+-..|..-+|.|.+...+++... +..++.+.+|+++++++-. +|... ++++
T Consensus 152 ~qL~k-~ye~k~----~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~ 225 (1010)
T KOG1991|consen 152 YQLFK-TYEWKK----DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFT 225 (1010)
T ss_pred HHHHH-HHhhcc----ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHH
Confidence 77764 233322 22445677788888999999999998764 3457889999999887766 56544 3333
Q ss_pred -hHHHHHHhhcC----------chhhH---------HHHHHHHHHHHhccCCc
Q psy13179 244 -LITTLIEKFLN----------VPLFR---------NVTLKCLTEIAAVSGTY 276 (352)
Q Consensus 244 -ll~~l~~~~l~----------~~~~~---------~~al~cL~ei~~~~~~~ 276 (352)
++.++ ...++ +|+.| .=|+-.|..++++..+|
T Consensus 226 ~W~~l~-l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~ 277 (1010)
T KOG1991|consen 226 SWMELF-LSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSP 277 (1010)
T ss_pred HHHHHH-HHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCc
Confidence 44443 22221 33443 35778888888887764
No 10
>KOG1410|consensus
Probab=99.66 E-value=6.4e-14 Score=135.61 Aligned_cols=245 Identities=19% Similarity=0.343 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHhcC-ChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 23 ITLLDNIVECMYTG-MGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 23 i~~L~~~v~~~~~~-~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
.++|+..++.+|.+ ++.+|.+||+-|.+|-.+|++.+.|..+|+++..++....|++.|-+.+.++= .+|-++|..||
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir 82 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIR 82 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHH
Confidence 57899999999987 67789999999999999999999999999999999999999999999988765 79999999999
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC------CcchhHHHHHHhcccC-hhhhhHHHHHHHhHHH
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK------NWQSFIPDIVGASKTN-ESLCQNNMVILKLLSE 174 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~------~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~e 174 (352)
+++++|+.+.. | .-.+.++..++++++.|-|.+|-+ ...+.+.++.+.++.+ ..+|..++.||..|..
T Consensus 83 ~Yilnylat~~--P---k~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvq 157 (1082)
T KOG1410|consen 83 NYILNYLATGA--P---KLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQ 157 (1082)
T ss_pred HHHHHHHhcCC--C---CcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 99999998732 2 123444599999999999999976 3457888888888765 5799999999999999
Q ss_pred HhhccCCCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHhcCC-----C---h----HHHHHHHHHHHh-cccc-------
Q psy13179 175 EVFDFSGGQLTQAKAKHLKDSMCLQ-FSQIFTLCQFVLDNSS-----N---A----SLVGATLETLLR-FLNW------- 233 (352)
Q Consensus 175 Ev~~~~~~~l~~~r~~~lk~~l~~~-~~~i~~l~~~iL~~~~-----~---~----~l~~~~L~~l~~-~l~W------- 233 (352)
|+...+.. .+..+++.+-..++.. .-+||.+-..+|.... + . .+.+.+|+|+.- |+.-
T Consensus 158 emN~~~~~-~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEsse 236 (1082)
T KOG1410|consen 158 EMNQADGM-DPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSE 236 (1082)
T ss_pred HhhCCCCC-CcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccc
Confidence 98764322 2344555556667765 4778888888876532 1 1 244555555531 2211
Q ss_pred ------Ccc---hhhcccchHHHHHHhhcC--chhhHHHHHHHHHHHHhccCC
Q psy13179 234 ------IPL---GYIFETNLITTLIEKFLN--VPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 234 ------i~~---~~i~~~~ll~~l~~~~l~--~~~~~~~al~cL~ei~~~~~~ 275 (352)
||. +.+.++..++++ +.+.+ .|.+...|++||+++++.++.
T Consensus 237 d~ctVQIPTsWRs~f~d~stlqlf-Fdly~slp~~~S~~alsclvqlASvRRs 288 (1082)
T KOG1410|consen 237 DLCTVQIPTSWRSSFLDSSTLQLF-FDLYHSLPPELSELALSCLVQLASVRRS 288 (1082)
T ss_pred cccceecCcHHHHHhcCchHHHHH-HHHhccCCchhhHHHHHHHHHHHHHHHH
Confidence 121 123456688886 55554 478999999999999998764
No 11
>KOG2023|consensus
Probab=99.55 E-value=1.3e-13 Score=133.39 Aligned_cols=243 Identities=12% Similarity=0.200 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhcc--CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~--s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
+++.++++.-.+|+++.|+.++..|++|+..|+.-.+...||.+ +.+..+|-.|.-+|||.|+-+|+.++++....+|
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiK 92 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIK 92 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHH
Confidence 55666667777888889999999999999999999999999865 5578899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhcc-
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDF- 179 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~- 179 (352)
..++.-+.. .++.+++-.+.++..|+..++-++||+.++.+.+.+.+.. .+|+.++..|+.++|+..++
T Consensus 93 s~~l~~lgd---------~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~l 163 (885)
T KOG2023|consen 93 SECLHGLGD---------ASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFL 163 (885)
T ss_pred HHHHhhccC---------chHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHH
Confidence 999887742 4566778999999999999999999999999999997765 78999999999999986653
Q ss_pred CCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcc-cchHHHHHHhhc--Cch
Q psy13179 180 SGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFE-TNLITTLIEKFL--NVP 256 (352)
Q Consensus 180 ~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~-~~ll~~l~~~~l--~~~ 256 (352)
+++.. .| -++--+|+.++++ ++.+|.+...++.|++.|+--.+-+..+. +.|++.+ +... .+|
T Consensus 164 ds~~~--~r------pl~~mipkfl~f~-----~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~l-FalanD~~~ 229 (885)
T KOG2023|consen 164 DSDVL--TR------PLNIMIPKFLQFF-----KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEIL-FALANDEDP 229 (885)
T ss_pred hhhcc--cC------chHHhHHHHHHHH-----hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHH-HHHccCCCH
Confidence 22211 12 2444456676665 45789999999999999976655444443 3477776 4444 468
Q ss_pred hhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Q psy13179 257 LFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTM 291 (352)
Q Consensus 257 ~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l 291 (352)
.+|...|..|+-+...+++ +...++..+.+.++
T Consensus 230 eVRk~vC~alv~Llevr~d--kl~phl~~IveyML 262 (885)
T KOG2023|consen 230 EVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYML 262 (885)
T ss_pred HHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHH
Confidence 9999999999999988764 33334444444444
No 12
>KOG1993|consensus
Probab=99.53 E-value=1.2e-12 Score=129.12 Aligned_cols=172 Identities=15% Similarity=0.268 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHh-ccCCchHHHHHHHHHHHHHHhhccC-----CCCHHHHHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTRWK-----ALPREQCDG 99 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL-~~s~~~~vrffal~~L~~~I~~~W~-----~l~~e~k~~ 99 (352)
+-++++++.+|+...++-||+.|.+++++|+.+.....|. +.+.+..+|+.|...+||-|.+.|. .+|+|+|..
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 3466777778888889999999999999999999999985 4566789999999999999999995 699999999
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh--hhhhHHHHHHHhHHHHhh
Q psy13179 100 IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE--SLCQNNMVILKLLSEEVF 177 (352)
Q Consensus 100 ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~--~~~~~~l~iL~~L~eEv~ 177 (352)
||..++..... +..-+-.+.|.+++.||+-|||..||++|+++.+.++++. .......+||-.|..=+.
T Consensus 82 iR~~Ll~~~~E---------~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK 152 (978)
T KOG1993|consen 82 IRCNLLLHSDE---------ENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILK 152 (978)
T ss_pred HHHHHHHhccc---------chhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 99999876642 2333448999999999999999999999999999887641 111223344444433111
Q ss_pred ccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy13179 178 DFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVL 211 (352)
Q Consensus 178 ~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL 211 (352)
. +...|-..-+.+|.+..+.|+.++.-++
T Consensus 153 ~-----Lat~RL~a~rk~F~el~~~I~~~l~~~l 181 (978)
T KOG1993|consen 153 A-----LATKRLLADRKAFYELAPEILTILAPIL 181 (978)
T ss_pred H-----HHHhHHhhhhHHHHHHhHHHHHHHHHHH
Confidence 1 2233444445567777788887665444
No 13
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.43 E-value=1.5e-11 Score=123.22 Aligned_cols=213 Identities=15% Similarity=0.250 Sum_probs=145.6
Q ss_pred HHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhc-cCCchHHHHHHHHHHHHHHhhccC-----CCCHHHHHHHHHHHH
Q psy13179 32 CMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILE-YSSNQQTKFYALQILEQVIKTRWK-----ALPREQCDGIKKYIV 105 (352)
Q Consensus 32 ~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~-~s~~~~vrffal~~L~~~I~~~W~-----~l~~e~k~~ik~~ll 105 (352)
..-+++++.++.||+-|.+++++++.......+.. .+.+..+|+-|+..+++.|+++|. .+.++++..||..++
T Consensus 12 ~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~ 91 (947)
T COG5657 12 LAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELF 91 (947)
T ss_pred hhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHH
Confidence 34566777899999999999999998888888754 457889999999999999999996 477778889999999
Q ss_pred HHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccCCCcc
Q psy13179 106 GLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFSGGQL 184 (352)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l 184 (352)
.++.+. ++...+ +.+.+++.|+..|||++||+.++|+++..+..+ ...++.++.+..+..+..+
T Consensus 92 ~lii~s--------~n~l~i-q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~------ 156 (947)
T COG5657 92 SLIISS--------SNQLQI-QNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR------ 156 (947)
T ss_pred HHHHcc--------cchHHH-HHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh------
Confidence 999863 233333 899999999999999999999999999998743 2223444444333332221
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHhcC---------CC---hHHHHHHHHHHHhcccc--Ccchhhcccc---hHHH
Q psy13179 185 TQAKAKHLKDSMCLQFSQIFTLCQFVLDNS---------SN---ASLVGATLETLLRFLNW--IPLGYIFETN---LITT 247 (352)
Q Consensus 185 ~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~---------~~---~~l~~~~L~~l~~~l~W--i~~~~i~~~~---ll~~ 247 (352)
-.+.+..|-+..|.+..++...+-.. .+ -.+.+.+|+.++.|... -++..+++.. ++..
T Consensus 157 ----l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~ 232 (947)
T COG5657 157 ----LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEH 232 (947)
T ss_pred ----hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 11123345555555655555544321 11 13556688888888543 4555566543 4554
Q ss_pred HHHhhcC--chhhHHHHHH
Q psy13179 248 LIEKFLN--VPLFRNVTLK 264 (352)
Q Consensus 248 l~~~~l~--~~~~~~~al~ 264 (352)
+ .+++. .+.++..+++
T Consensus 233 F-~klls~~~~~lq~~~le 250 (947)
T COG5657 233 F-CKLLSYSNPVLQKDCLE 250 (947)
T ss_pred H-HHHHhhcchhhhhhhcc
Confidence 3 56664 4555553333
No 14
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=5.9e-10 Score=109.69 Aligned_cols=199 Identities=14% Similarity=0.189 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccC-CchHHHHHHHHHHHHHHhhccCC-----CCHHHH
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTRWKA-----LPREQC 97 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I~~~W~~-----l~~e~k 97 (352)
+.+-++..+..+.++..|..|+..|.++++.|+....|.+++... -+..||.-|+..+||+|.+.|+. ++++++
T Consensus 3 ~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek 82 (970)
T COG5656 3 EELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEK 82 (970)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCccc
Confidence 455666777777788899999999999999999999999998654 58899999999999999999986 456677
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcC-CCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHH
Q psy13179 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWP-KNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEE 175 (352)
Q Consensus 98 ~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P-~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eE 175 (352)
...|.++.+-+..... .++...+..+..+++.|+-.||| +.|+ +++...+++++++ .+...||.++..+
T Consensus 83 ~e~K~~lienil~v~l-----~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el--- 153 (970)
T COG5656 83 SEAKKYLIENILDVFL-----YSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL--- 153 (970)
T ss_pred HHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH---
Confidence 8888777777766532 23555667888899999999999 7899 9999999998775 4555676666544
Q ss_pred hhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CChHHHHHHHHHHHhcccc
Q psy13179 176 VFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNS--SNASLVGATLETLLRFLNW 233 (352)
Q Consensus 176 v~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~--~~~~l~~~~L~~l~~~l~W 233 (352)
++..+-....+| ..+-....+.+|.+.++-.++.... +..++...+|+++++++-.
T Consensus 154 -fkayRwk~ndeq-~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~ 211 (970)
T COG5656 154 -FKAYRWKYNDEQ-VDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY 211 (970)
T ss_pred -HHHHhhhccchH-hhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh
Confidence 442222233333 2344445566777777766665522 3567888888888776433
No 15
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.31 E-value=1.2e-11 Score=90.93 Aligned_cols=66 Identities=27% Similarity=0.552 Sum_probs=62.2
Q ss_pred HHHHHHHHhcC-CChHHHHHHHh-ccCCchHHHHHHHHHHHHHHhhccC--------CCCHHHHHHHHHHHHHHHH
Q psy13179 44 AQEVLTALKEH-PDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTRWK--------ALPREQCDGIKKYIVGLII 109 (352)
Q Consensus 44 A~~~L~~fk~~-p~~w~~~~~iL-~~s~~~~vrffal~~L~~~I~~~W~--------~l~~e~k~~ik~~ll~~l~ 109 (352)
|++.|.+++++ |++|..|..++ +.+.+..+|++|+.+|++.|+++|. .+|+++|..||+.+++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 99999999999 5556899999999999999999999 9999999999999999885
No 16
>KOG1241|consensus
Probab=99.29 E-value=9.6e-11 Score=115.47 Aligned_cols=220 Identities=17% Similarity=0.245 Sum_probs=155.7
Q ss_pred HHHHHHhcCChHhHHHHHHHHHHHhcC--CChHHHHHHHhcc-CCchHHHHHHHHHHHHHHh-----------hccCCCC
Q psy13179 28 NIVECMYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEY-SSNQQTKFYALQILEQVIK-----------TRWKALP 93 (352)
Q Consensus 28 ~~v~~~~~~~~~~r~~A~~~L~~fk~~--p~~w~~~~~iL~~-s~~~~vrffal~~L~~~I~-----------~~W~~l~ 93 (352)
+++....+||...|+.|+++|++++.+ |.......++|.+ .+++.+|..|.-.|||.+. .||-.++
T Consensus 5 ~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 5 ELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLP 84 (859)
T ss_pred HHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCC
Confidence 344446789988999999999999986 4556666667754 5678999999999999874 4799999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhcccChh--hhhHHHHHHH
Q psy13179 94 REQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGASKTNES--LCQNNMVILK 170 (352)
Q Consensus 94 ~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~~~~~~--~~~~~l~iL~ 170 (352)
.|.|+++|+.++..+.. ..+.+-+-.+++++.|+.-+-|+ .||++|..+++.....+. +.+..|.-+-
T Consensus 85 ~e~reqVK~~il~tL~~---------~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGS---------PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHHHHHHHHHHHHHcCC---------CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 99999999999988853 24445588999999999999997 799999999998865443 3466788888
Q ss_pred hHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHH-HHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhccc----c-h
Q psy13179 171 LLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIF-TLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFET----N-L 244 (352)
Q Consensus 171 ~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~-~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~----~-l 244 (352)
.++|++. ++ .+.+....|+ ..+.......++..+.-++++++..-+..... .|+. + +
T Consensus 156 yice~i~--------pe-------vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~--nF~~E~ern~i 218 (859)
T KOG1241|consen 156 YICEDID--------PE-------VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA--NFNNEMERNYI 218 (859)
T ss_pred HHHccCC--------HH-------HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH--hhccHhhhcee
Confidence 8887632 11 1222222232 22333333445566677777877654444332 2222 2 4
Q ss_pred HHHHHHhhc--CchhhHHHHHHHHHHHHhccC
Q psy13179 245 ITTLIEKFL--NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 245 l~~l~~~~l--~~~~~~~~al~cL~ei~~~~~ 274 (352)
++.. +... ++..++.+|+.||+-|.+.-.
T Consensus 219 Mqvv-cEatq~~d~~i~~aa~~ClvkIm~LyY 249 (859)
T KOG1241|consen 219 MQVV-CEATQSPDEEIQVAAFQCLVKIMSLYY 249 (859)
T ss_pred eeee-eecccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4443 3333 567899999999999998753
No 17
>KOG2274|consensus
Probab=99.17 E-value=8.8e-09 Score=103.53 Aligned_cols=144 Identities=16% Similarity=0.250 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhcc-CCchHHHHHHHHHHHHHHhhccCC----------CC
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEY-SSNQQTKFYALQILEQVIKTRWKA----------LP 93 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~-s~~~~vrffal~~L~~~I~~~W~~----------l~ 93 (352)
.+-..+....+|+...|.+|+..|.++..+++.-.....+..+ ..+...|.+|+..|+..|.++|.. -+
T Consensus 5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~ 84 (1005)
T KOG2274|consen 5 AIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVS 84 (1005)
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCccc
Confidence 3455566677888889999999999999888866666666544 357889999999999999999963 45
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhccc-ChhhhhHHHHHHHhH
Q psy13179 94 REQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKT-NESLCQNNMVILKLL 172 (352)
Q Consensus 94 ~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~-~~~~~~~~l~iL~~L 172 (352)
.+.|..||+.+++.+.. +++.+++..+.+++.|+.-|||+.||..++-+..++++ +.....+.|++|..|
T Consensus 85 e~~K~~IRe~Ll~~l~~---------sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 85 EEVKALIREQLLNLLDD---------SNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAEL 155 (1005)
T ss_pred HHHHHHHHHHHHhhhhc---------cccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 66788899988888862 35556699999999999999999999999999999874 445667789999998
Q ss_pred HHHhh
Q psy13179 173 SEEVF 177 (352)
Q Consensus 173 ~eEv~ 177 (352)
..|+.
T Consensus 156 ~~ev~ 160 (1005)
T KOG2274|consen 156 SDEVD 160 (1005)
T ss_pred HHHHH
Confidence 88875
No 18
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.90 E-value=1.7e-07 Score=90.36 Aligned_cols=217 Identities=17% Similarity=0.261 Sum_probs=148.0
Q ss_pred HhcCChHhHHHHHHHHHHHhcCC--ChHHHHHHHh-ccCCchHHHHHHHHHHHHHHh-----------hccCCCCHHHHH
Q psy13179 33 MYTGMGVEQKAAQEVLTALKEHP--DAWTRVDTIL-EYSSNQQTKFYALQILEQVIK-----------TRWKALPREQCD 98 (352)
Q Consensus 33 ~~~~~~~~r~~A~~~L~~fk~~p--~~w~~~~~iL-~~s~~~~vrffal~~L~~~I~-----------~~W~~l~~e~k~ 98 (352)
.++|++..|..|+..|.+++... .......+.| ..+++++.|..|..+||+.+. .+|-.+++|.|+
T Consensus 14 vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~ 93 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKE 93 (858)
T ss_pred cCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHH
Confidence 46788888999999999998753 2333444444 446789999999999999875 479999999999
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhcccChh--hhhHHHHHHHhHHHH
Q psy13179 99 GIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGASKTNES--LCQNNMVILKLLSEE 175 (352)
Q Consensus 99 ~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~~~~~~--~~~~~l~iL~~L~eE 175 (352)
++|...+..+.. ..+-+-+..+++++.|+..+-|. .||+++.+++......+. ...-.+.++...+|-
T Consensus 94 qvK~~al~aL~s---------~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces 164 (858)
T COG5215 94 QVKGMALRALKS---------PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES 164 (858)
T ss_pred HHHHHHHHHhcC---------CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc
Confidence 999999988863 35667799999999999999997 799999999988864432 222345566655542
Q ss_pred hhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhccc--c-hHHHHHHhh
Q psy13179 176 VFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFET--N-LITTLIEKF 252 (352)
Q Consensus 176 v~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~--~-ll~~l~~~~ 252 (352)
.. + .+.....-.-++..+...+.+..+..+.-.+|+++-.=+-.+.-+.-.+. + +++.. +..
T Consensus 165 -----~~---P------e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv-cea 229 (858)
T COG5215 165 -----EA---P------EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV-CEA 229 (858)
T ss_pred -----cC---H------HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee-ehh
Confidence 11 1 01111111225566666666666667777788888652222221111111 1 44543 333
Q ss_pred c--CchhhHHHHHHHHHHHHhcc
Q psy13179 253 L--NVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 253 l--~~~~~~~~al~cL~ei~~~~ 273 (352)
. ++.++..+|.-||+-|....
T Consensus 230 tq~~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 230 TQGNDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHH
Confidence 3 56788999999999998764
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.90 E-value=4.3 Score=40.52 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=82.1
Q ss_pred cCChHhHHHHHHHHHHHhcC-CChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy13179 35 TGMGVEQKAAQEVLTALKEH-PDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIK 110 (352)
Q Consensus 35 ~~~~~~r~~A~~~L~~fk~~-p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~ 110 (352)
+.+...|+-+.-++..+... |+....+..-+. .++++.+|-.|+.+|-+.. +++-.+.+-..+.+.+..
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~ 125 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSD 125 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcC
Confidence 34555788899999887775 454555555443 2578999999999998854 555555565666555542
Q ss_pred hcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcch-hHHHHHHhcccCh-hhhhHHHHHHHhH
Q psy13179 111 TSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQS-FIPDIVGASKTNE-SLCQNNMVILKLL 172 (352)
Q Consensus 111 ~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~-fi~~l~~~~~~~~-~~~~~~l~iL~~L 172 (352)
+++.++.+.+.++..+.+. .|+.-+. +++.+.+++.... .....++.++..+
T Consensus 126 ---------~~~~VRk~A~~~l~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 126 ---------PSPYVRKKAALALLKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred ---------CchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 3556668899999999988 6776665 6888888885443 3444555555555
No 20
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.04 E-value=13 Score=36.29 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=93.3
Q ss_pred CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchh
Q psy13179 68 SSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSF 147 (352)
Q Consensus 68 s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~f 147 (352)
+.++.+|-.+++.+-..++| |..-+ .+...+-........... ....+.-+.-+.-+.-.++.|.-|. =..+
T Consensus 201 ~~~~~~~~~~~~~la~LvNK-~~~~~-----~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~Wi~KaLv~R~~~~-~~~~ 272 (415)
T PF12460_consen 201 SEDEFSRLAALQLLASLVNK-WPDDD-----DLDEFLDSLLQSISSSED-SELRPQALEILIWITKALVMRGHPL-ATEL 272 (415)
T ss_pred CCChHHHHHHHHHHHHHHcC-CCChh-----hHHHHHHHHHhhhcccCC-cchhHHHHHHHHHHHHHHHHcCCch-HHHH
Confidence 34577788888888777776 64322 233322222222101000 0111112223333333444444443 2356
Q ss_pred HHHHHHhcccChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHhcCCChHHHHHHHHH
Q psy13179 148 IPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQ-FSQIFTLCQFVLDNSSNASLVGATLET 226 (352)
Q Consensus 148 i~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~-~~~i~~l~~~iL~~~~~~~l~~~~L~~ 226 (352)
++.+++.+.+.. .....-+-+..|..|.-++ ++......+|=-.++. |..++..+.+-...+ +.+.....|.+
T Consensus 273 ~~~L~~lL~~~~-~g~~aA~~f~il~~d~~~~----l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~A 346 (415)
T PF12460_consen 273 LDKLLELLSSPE-LGQQAAKAFGILLSDSDDV----LNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHhCChh-hHHHHHHHHhhHhcCcHHh----cCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHH
Confidence 777777765532 1122223333332221111 1111111222222222 233333333333332 23356678899
Q ss_pred HHhccccCcchhhcc--cchHHHHHHhhc--CchhhHHHHHHHHHHHHhcc
Q psy13179 227 LLRFLNWIPLGYIFE--TNLITTLIEKFL--NVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 227 l~~~l~Wi~~~~i~~--~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~ 273 (352)
+.+.++++|.+.+.. ++++++++ ..+ +++.++..++++|..++...
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLl-qsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLL-QSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999765543 35888874 334 57789999999999999766
No 21
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.16 E-value=21 Score=35.51 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc-CchhhHHHHHHHHHHHHhccC
Q psy13179 203 IFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL-NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 203 i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l-~~~~~~~~al~cL~ei~~~~~ 274 (352)
+...+...+.....+++...++-+++.|..-++-.. .-++++..+...+. .++.++...+.++..+..+..
T Consensus 415 ~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 415 ILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCC
Confidence 444445555556778888999999999876655311 22345555544444 456799999999999987765
No 22
>KOG2171|consensus
Probab=89.17 E-value=16 Score=39.48 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhh-cccchHHHHHHhhcCc--hhhHHHHHHHHHHHHhccCC
Q psy13179 199 QFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYI-FETNLITTLIEKFLNV--PLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 199 ~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i-~~~~ll~~l~~~~l~~--~~~~~~al~cL~ei~~~~~~ 275 (352)
.+|.+++++.+... ++++.....++.++.+....++-... .-.++..++ .+.+++ ..+|..|++.+..++.-...
T Consensus 115 ~WPell~~L~q~~~-S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf-~q~~~d~s~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTK-SPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLF-SQTMTDPSSPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred chHHHHHHHHHHhc-CCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHH-HHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence 57889988888775 46788999999999887555543221 112455554 555643 34899999999887754421
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCC
Q psy13179 276 YSNYENVYVALFTTTMAQLQMMFPMD 301 (352)
Q Consensus 276 ~~~~~~~~~~~f~~~l~~l~~~~p~~ 301 (352)
.+.-..++..+.+.++..+.+.++.+
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~ 218 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDG 218 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhcc
Confidence 11122344455566665555555443
No 23
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.10 E-value=27 Score=35.27 Aligned_cols=279 Identities=16% Similarity=0.212 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhc-CCChH----HHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKE-HPDAW----TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQ 96 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~~w----~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~ 96 (352)
+.+....++...-+ +...++-|-+++-+|-+ -|+-- .....+.+ ..+..||-.|..-|-...+. +++.
T Consensus 21 ~~~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~-----~~~~ 93 (556)
T PF05918_consen 21 HEEDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKD-----NPEH 93 (556)
T ss_dssp GHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T-------T-
T ss_pred CHHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHh-----HHHH
Confidence 45566666655543 45556656666666544 36533 33333333 45778888886666554442 2333
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHh
Q psy13179 97 CDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEV 176 (352)
Q Consensus 97 k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv 176 (352)
...+-..|.+++.. .++.-+..+-.++..+++.|=...-..+++++...-...+...+. +|+.|.+-+
T Consensus 94 v~kvaDvL~QlL~t---------dd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~---~lkFl~~kl 161 (556)
T PF05918_consen 94 VSKVADVLVQLLQT---------DDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRER---ALKFLREKL 161 (556)
T ss_dssp HHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHH---HHHHHHHHG
T ss_pred HhHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHH---HHHHHHHHH
Confidence 34444545554432 223333455556777777763334445566655432233334444 444444444
Q ss_pred hccCCCcccH--H--H--HHHHHHHHHHhHHHHHHHHHHHHhc-------------------------------CCChHH
Q psy13179 177 FDFSGGQLTQ--A--K--AKHLKDSMCLQFSQIFTLCQFVLDN-------------------------------SSNASL 219 (352)
Q Consensus 177 ~~~~~~~l~~--~--r--~~~lk~~l~~~~~~i~~l~~~iL~~-------------------------------~~~~~l 219 (352)
.......+++ + + ...++..|..-...=|.+++.+|.. ..+++.
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~ 241 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPES 241 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHH
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHH
Confidence 4433333331 1 1 1233333322112223333333322 124456
Q ss_pred HHHHHHHHHhccccCcchhhcccchHHHHHHhhcC-----chhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Q psy13179 220 VGATLETLLRFLNWIPLGYIFETNLITTLIEKFLN-----VPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQL 294 (352)
Q Consensus 220 ~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~-----~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l 294 (352)
+...+.|+..=+....- .+-.+.|+..++.+.+. .+..+..-+..+.|++.-... ..-.+. ++.+...+
T Consensus 242 Idrli~C~~~Alp~fs~-~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~-~d~~~~----L~~i~~~L 315 (556)
T PF05918_consen 242 IDRLISCLRQALPFFSR-GVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGA-QDARQL----LPSIFQLL 315 (556)
T ss_dssp HHHHHHHHHHHGGG-BT-TB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT-----THHHH----HHHHHHHH
T ss_pred HHHHHHHHHHhhHHhcC-CCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCc-ccHHHH----HHHHHHHH
Confidence 66666666653333221 22335577777666553 356778889999999876543 223333 34444556
Q ss_pred HhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Q psy13179 295 QMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKE 332 (352)
Q Consensus 295 ~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~~~ 332 (352)
..++|... ..++.+..|++++..-+...+..
T Consensus 316 ~~ymP~~~-------~~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 316 KKYMPSKK-------TEPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp HTTS-----------------HHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCC-------CCCcccchHhhHHHHHHHHHhhh
Confidence 66777321 23344567888766555554444
No 24
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.94 E-value=26 Score=34.75 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=39.1
Q ss_pred CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy13179 55 PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIK 110 (352)
Q Consensus 55 p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~ 110 (352)
++-|..+..++..+++.++|..|+..|...|++.-... ...|...+..+..
T Consensus 27 ~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-----~~~R~~fF~~I~~ 77 (464)
T PF11864_consen 27 EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-----GLMRAEFFRDISD 77 (464)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-----HHHHHHHHHHHhc
Confidence 46799999999888899999999999999999765432 2445556655543
No 25
>PRK09687 putative lyase; Provisional
Probab=88.92 E-value=19 Score=33.13 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKY 103 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ 103 (352)
-..+.++..+.+++...|..|...|.++. .++.+..+..++. +.++.+|.+|+.+|-..-. +... ...
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~------~~~~----~~~ 90 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG-GQDVFRLAIELCS-SKNPIERDIGADILSQLGM------AKRC----QDN 90 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC------Cccc----hHH
Confidence 34566667777888889999999997664 6888888888764 6689999999999887321 1110 112
Q ss_pred HHHHHHHh-cCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccC-hhhhhHHHHHHHhHH-HHhhc--
Q psy13179 104 IVGLIIKT-SSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTN-ESLCQNNMVILKLLS-EEVFD-- 178 (352)
Q Consensus 104 ll~~l~~~-~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~-eEv~~-- 178 (352)
.+..+... .. ..++.++...+.++..+.... +...|.++..+......+ ..+.......|..+. ++..+
T Consensus 91 a~~~L~~l~~~-----D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L 164 (280)
T PRK09687 91 VFNILNNLALE-----DKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLL 164 (280)
T ss_pred HHHHHHHHHhc-----CCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHH
Confidence 22333221 11 235566677777777764332 222366666665554332 223333323322111 00000
Q ss_pred --cCCCcccHHHHHHHHHHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc
Q psy13179 179 --FSGGQLTQAKAKHLKDSMCL---QFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253 (352)
Q Consensus 179 --~~~~~l~~~r~~~lk~~l~~---~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l 253 (352)
.-.+.-...|..- -.++.. ..+.+...+...|. ..++.+...+...++.+ -++..++.| ...+
T Consensus 165 ~~~L~d~~~~VR~~A-~~aLg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~---------~~~~av~~L-i~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWA-AFALNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLALR---------KDKRVLSVL-IKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHcc---------CChhHHHHH-HHHH
Confidence 0000011122211 112221 13455555555553 34566777776666552 234566665 5666
Q ss_pred CchhhHHHHHHHHHHHHh
Q psy13179 254 NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 254 ~~~~~~~~al~cL~ei~~ 271 (352)
+++.++..++++|-++-+
T Consensus 233 ~~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 233 KKGTVGDLIIEAAGELGD 250 (280)
T ss_pred cCCchHHHHHHHHHhcCC
Confidence 777778777777776654
No 26
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=88.22 E-value=4.2 Score=34.85 Aligned_cols=78 Identities=17% Similarity=0.287 Sum_probs=55.7
Q ss_pred HHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHH---Hhhc--CchhhHHHHHHHHHHHH
Q psy13179 196 MCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLI---EKFL--NVPLFRNVTLKCLTEIA 270 (352)
Q Consensus 196 l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~---~~~l--~~~~~~~~al~cL~ei~ 270 (352)
+.....++...+...|....++.....+|+|+...++-.|.+- +.++++..++ ..++ .|++++..++.|+..++
T Consensus 95 La~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~r-L~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 95 LASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHR-LPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhh-cCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4444555666667777777788889999999999998887654 3445444432 2222 68899999999999988
Q ss_pred hccC
Q psy13179 271 AVSG 274 (352)
Q Consensus 271 ~~~~ 274 (352)
+...
T Consensus 174 s~~~ 177 (182)
T PF13251_consen 174 SVQP 177 (182)
T ss_pred cCCC
Confidence 7654
No 27
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.97 E-value=10 Score=29.31 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.0
Q ss_pred cchHHHHHHhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhc
Q psy13179 242 TNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMM 297 (352)
Q Consensus 242 ~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~ 297 (352)
+.++..| ...++.++++..|++|-...+..=.. +.+..+++.++..+..+
T Consensus 55 pQI~a~L-~sal~~~~l~~~al~~W~~fi~~L~~-----~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 55 PQIMACL-QSALEIPELREEALSCWNCFIKTLDE-----EDLGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHH-HHHhCChhhHHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHHHHHh
Confidence 3455554 66678889999999999888754321 34556666666555433
No 28
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=86.84 E-value=32 Score=33.49 Aligned_cols=225 Identities=16% Similarity=0.208 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHH-HhcCCChHHHHHH----Hh----ccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTA-LKEHPDAWTRVDT----IL----EYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~-fk~~p~~w~~~~~----iL----~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
+|..-+.+++..+.+||+.+|.....+|-. +.+-++--..... ++ ..+.....---.+.++...|+.-=..
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 688899999999999999999998888887 3333433332222 22 11222222222344455555432225
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHh
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKL 171 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~ 171 (352)
+.++.+..+++.++.+... +.-..|-.+++.++..++.+| |.-=..++..++..+..+...-+ ...|..
T Consensus 210 lk~eh~~fl~~vllPLh~~--------~~~~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Ke--v~FL~e 278 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKS--------PHLSSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKE--VLFLNE 278 (409)
T ss_dssp --HHHHHHHHHTTGGGGGS--------TGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhH--HHHHHH
Confidence 6666666666666555432 234456688888888888876 44444566666666654332222 223333
Q ss_pred HHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHh--ccccCcchhhcccchHHHHH
Q psy13179 172 LSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLR--FLNWIPLGYIFETNLITTLI 249 (352)
Q Consensus 172 L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~--~l~Wi~~~~i~~~~ll~~l~ 249 (352)
+ +++.+. ++. ..+......+|..+..++. +.+-+++..||..... +++++.- ....+++.++
T Consensus 279 l-~~il~~----~~~-------~~f~~i~~~lf~~la~ci~-S~h~qVAErAl~~w~n~~~~~li~~---~~~~i~p~i~ 342 (409)
T PF01603_consen 279 L-EEILEV----LPP-------EEFQKIMVPLFKRLAKCIS-SPHFQVAERALYFWNNEYFLSLISQ---NSRVILPIIF 342 (409)
T ss_dssp H-HHHHTT------H-------HHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHGGGGSHHHHHHHHC---THHHHHHHHH
T ss_pred H-HHHHHh----cCH-------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHCCHHHHHHHHh---ChHHHHHHHH
Confidence 2 334331 111 1133334456665555554 3567788887755443 1222210 0112555543
Q ss_pred Hhhc------CchhhHHHHHHHHHHHHhc
Q psy13179 250 EKFL------NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 250 ~~~l------~~~~~~~~al~cL~ei~~~ 272 (352)
..+. -+..+|..|..++..+.+.
T Consensus 343 ~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 343 PALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2222 1568999999999887754
No 29
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=85.20 E-value=14 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=33.4
Q ss_pred chHHHHHHhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhc
Q psy13179 243 NLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMM 297 (352)
Q Consensus 243 ~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~ 297 (352)
.++..| ...++.+++|..|++|....+..=.. +.+..+++.++..+..+
T Consensus 56 QI~acL-~saL~~~eL~~~al~~W~~~i~~L~~-----~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 56 QIMACL-QSALEIPELRSLALRCWHVLIKTLKE-----EELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHH-HHHhCchhHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHHh
Confidence 444444 66678899999999999988865322 45666777776655443
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=83.74 E-value=2.1 Score=31.25 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHH
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQI 80 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~ 80 (352)
+.+..++..+.++++..|.+|-..|.++. +++++......+.++.+..+|..|+..
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~~~~~~vr~~a~~a 86 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQDDDDEVVREAAAEA 86 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC-SSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcCCCcHHHHHHHHhh
Confidence 33444444444444445555555555553 345555555555544444555555444
No 31
>PF05536 Neurochondrin: Neurochondrin
Probab=83.07 E-value=56 Score=33.12 Aligned_cols=162 Identities=15% Similarity=0.268 Sum_probs=93.2
Q ss_pred CCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHH
Q psy13179 54 HPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133 (352)
Q Consensus 54 ~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~ 133 (352)
++.....|..+|.... +.-||.|+-.+.+.++ +.+.....|..+++.+ .
T Consensus 3 ~~~~l~~c~~lL~~~~-D~~rfagL~lvtk~~~------~~~~~~~~~~~v~~ai------------g------------ 51 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD-DTERFAGLLLVTKLLD------ADDEDSQTRRRVFEAI------------G------------ 51 (543)
T ss_pred chHHHHHHHHHhccCC-cHHHHHHHHHHHHcCC------CchhhHHHHHHHHHhc------------C------------
Confidence 4567788999998655 8889999999988876 2232233333344322 1
Q ss_pred HHHHhHcCCCcchhHHHHHHhccc-----ChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHH
Q psy13179 134 QVLKREWPKNWQSFIPDIVGASKT-----NESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQ 208 (352)
Q Consensus 134 ~I~~~~~P~~Wp~fi~~l~~~~~~-----~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~ 208 (352)
+.|++-++..-.. .......++.||..++.+ ..+. +. ..|...+|.+ .
T Consensus 52 -----------~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~------~~~a--~~----~~~~~~IP~L----l 104 (543)
T PF05536_consen 52 -----------FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD------PELA--SS----PQMVSRIPLL----L 104 (543)
T ss_pred -----------hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC------hhhh--cC----HHHHHHHHHH----H
Confidence 1233333333221 112334577788776531 1110 11 1233334444 4
Q ss_pred HHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhccC
Q psy13179 209 FVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 209 ~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~ 274 (352)
.++...+..+++..++.|+..+.+ .|. ..+.+.+-++.++..+.+.+...+.|+..+.-++++..
T Consensus 105 e~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 105 EILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcc
Confidence 455554445788888999888773 333 34556666666654445666677888888888777643
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=82.22 E-value=5.9 Score=28.74 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=43.1
Q ss_pred HHHHHHH-hcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHH
Q psy13179 27 DNIVECM-YTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQV 84 (352)
Q Consensus 27 ~~~v~~~-~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~ 84 (352)
+.+++.+ -+++...|..|-..|.++. ++++.......+ ++.++.+|..|+..|...
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 4556666 4567778999999998664 567777777778 467899999999999853
No 33
>KOG2023|consensus
Probab=81.42 E-value=12 Score=38.13 Aligned_cols=131 Identities=14% Similarity=0.277 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhHcCCC-cchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHH
Q psy13179 126 NKLNMILVQVLKREWPKN-WQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQI 203 (352)
Q Consensus 126 ~kl~~~l~~I~~~~~P~~-Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i 203 (352)
+|.+.+-..+...-|+++ -|..++-+-+.+.+.. ...+.+.-.|-++.|-..+ .|..+.|.+
T Consensus 372 RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~----------------g~~p~LpeL 435 (885)
T KOG2023|consen 372 RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ----------------GFVPHLPEL 435 (885)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh----------------hcccchHHH
Confidence 455555555555555543 3556666666655433 3456676777777764333 355566778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccccCcch---hhcccchHHHHHHhhc-CchhhHHHHHHHHHHHHhccC
Q psy13179 204 FTLCQFVLDNSSNASLVGATLETLLRFLNWIPLG---YIFETNLITTLIEKFL-NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 204 ~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~---~i~~~~ll~~l~~~~l-~~~~~~~~al~cL~ei~~~~~ 274 (352)
+.++...|.. ..|-+.+-+.=++.+|-+|+--. ..+. +++.-++...+ ++..+.++||..+..+-+...
T Consensus 436 ip~l~~~L~D-KkplVRsITCWTLsRys~wv~~~~~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 436 IPFLLSLLDD-KKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHhcc-CccceeeeeeeeHhhhhhhHhcCChHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 8888888754 34555555667788888886322 2222 23332224444 578899999999987776654
No 34
>KOG1824|consensus
Probab=80.98 E-value=85 Score=33.78 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhh--hHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHh
Q psy13179 122 KMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLC--QNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQ 199 (352)
Q Consensus 122 ~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~--~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~ 199 (352)
..++.|.+.+++.++...--+-+...++++...+..+.... -....+|..++.-... | +-..+...
T Consensus 188 ~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~---------r---~~~h~~~i 255 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH---------R---FGSHLDKI 255 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc---------h---hhcccchh
Confidence 45668999999999887644566778888877776543221 2233444444322110 1 00011112
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchh-hcccchHHHHHHhhc-------------------------
Q psy13179 200 FSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGY-IFETNLITTLIEKFL------------------------- 253 (352)
Q Consensus 200 ~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~-i~~~~ll~~l~~~~l------------------------- 253 (352)
.|-+.++|..+ +..+.++.+.+|+.+..|+...|.+. -+-+++++++ ..++
T Consensus 256 vp~v~~y~~~~--e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~-l~yisYDPNy~yd~~eDed~~~~ed~eDd 332 (1233)
T KOG1824|consen 256 VPLVADYCNKI--EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLC-LSYISYDPNYNYDTEEDEDAMFLEDEEDD 332 (1233)
T ss_pred hHHHHHHhccc--ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHH-HHHhccCCCCCCCCccchhhhhhhccccc
Confidence 23334444332 22455677777777777776665432 1234455543 2333
Q ss_pred -------Cch----hhHHHHHHHHHHHHhccC
Q psy13179 254 -------NVP----LFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 254 -------~~~----~~~~~al~cL~ei~~~~~ 274 (352)
+++ .+|.+|..|+..+++.+.
T Consensus 333 e~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~ 364 (1233)
T KOG1824|consen 333 EQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL 364 (1233)
T ss_pred hhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence 011 478999999999887764
No 35
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=80.40 E-value=7.7 Score=36.41 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccccCcchhhcccc----hHHHHHHhhc-CchhhH-HHHHHHHHHHHhccCCccchHHHHHHHHHHHHHH
Q psy13179 220 VGATLETLLRFLNWIPLGYIFETN----LITTLIEKFL-NVPLFR-NVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQ 293 (352)
Q Consensus 220 ~~~~L~~l~~~l~Wi~~~~i~~~~----ll~~l~~~~l-~~~~~~-~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~ 293 (352)
.+.+|+.+..|++..+-...+..+ +++.++..|- +.|..| ..++.|+..++.+-.. ...+.+..+++.+...
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~--~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE--LIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG--GCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHH
Confidence 344555555555555422222223 3333223333 456676 4567777777766432 1112333444444444
Q ss_pred HHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHHHHhhh
Q psy13179 294 LQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGS 335 (352)
Q Consensus 294 l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~~~~~~ 335 (352)
...++..+. .+-+++...+-.++......+..
T Consensus 122 Tl~MI~~d~----------~~yPe~r~~ff~LL~~i~~~~f~ 153 (319)
T PF08767_consen 122 TLPMINKDF----------EEYPEHRVNFFKLLRAINEHCFP 153 (319)
T ss_dssp HHHHHSSTS----------SSSHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhhh----------hhChHHHHHHHHHHHHHHHHhHH
Confidence 433332211 11234555666666666655543
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.33 E-value=67 Score=32.18 Aligned_cols=224 Identities=15% Similarity=0.183 Sum_probs=116.1
Q ss_pred cCChHhHHHHHHHHHHH-hcCCChHHHHHH--Hhc------cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q psy13179 35 TGMGVEQKAAQEVLTAL-KEHPDAWTRVDT--ILE------YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIV 105 (352)
Q Consensus 35 ~~~~~~r~~A~~~L~~f-k~~p~~w~~~~~--iL~------~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll 105 (352)
.++...|-++.+.+-++ +.+++....|.. ++. .+.+.-+|.=++.+|.....+.+.. .-=.+.++=+.|.
T Consensus 171 ~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~-~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL-QYLEQQGIFDKLS 249 (503)
T ss_pred ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH-HHHHhCCHHHHHH
Confidence 33555677888888776 457788887775 432 2467789999999999987754431 1112334444555
Q ss_pred HHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC----CcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccC
Q psy13179 106 GLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK----NWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFS 180 (352)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~----~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~ 180 (352)
+.+.....+| .....++-..-.....++.. .|. .+|.|+..+.+...+.+ .....++..+..+..-
T Consensus 250 ~~l~~~~~dp---~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst----- 320 (503)
T PF10508_consen 250 NLLQDSEEDP---RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST----- 320 (503)
T ss_pred HHHhccccCC---cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-----
Confidence 5555433332 01222333333455555554 444 56777777776665443 4445556666555411
Q ss_pred CCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc---hhhc----------ccc-hHH
Q psy13179 181 GGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL---GYIF----------ETN-LIT 246 (352)
Q Consensus 181 ~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~---~~i~----------~~~-ll~ 246 (352)
.+-...+.......+..++........ ....++...+|+++..++.--+. +.+. ..+ ...
T Consensus 321 -----~~G~~~L~~~~~~~~~~~l~~~~~~~~-~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 321 -----VEGKQLLLQKQGPAMKHVLKAIGDAIK-SGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN 394 (503)
T ss_pred -----HHHHHHHHhhcchHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH
Confidence 111111101111112222222222221 23446666777777776543221 1110 001 111
Q ss_pred HHHHhhcC-c-hhhHHHHHHHHHHHHhccCC
Q psy13179 247 TLIEKFLN-V-PLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 247 ~l~~~~l~-~-~~~~~~al~cL~ei~~~~~~ 275 (352)
.+ ..++. + |++|.+++..|..++..+.+
T Consensus 395 ~l-~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 395 LL-MSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred HH-HHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 22 33343 3 79999999999999987654
No 37
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.22 E-value=16 Score=30.60 Aligned_cols=77 Identities=13% Similarity=0.278 Sum_probs=52.9
Q ss_pred HHhccCCchHHHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcC
Q psy13179 63 TILEYSSNQQTKFYALQILEQVIKTR-WKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWP 141 (352)
Q Consensus 63 ~iL~~s~~~~vrffal~~L~~~I~~~-W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P 141 (352)
.+| +|++++.|+.|+.+++..+... |..+-.....-++. ++..+.+ ..++.++.-.+.+++.|+.+.
T Consensus 32 ~LL-~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~-Ll~~L~~--------~~~~~~~~~ai~~L~~l~~~~-- 99 (165)
T PF08167_consen 32 SLL-QSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA-LLSILEK--------PDPPSVLEAAIITLTRLFDLI-- 99 (165)
T ss_pred HHh-CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHcC--------CCCHHHHHHHHHHHHHHHHHh--
Confidence 344 4678999999999999999986 88775555444443 5555543 234556677888888888764
Q ss_pred CCcchhHHHH
Q psy13179 142 KNWQSFIPDI 151 (352)
Q Consensus 142 ~~Wp~fi~~l 151 (352)
.+||++-.++
T Consensus 100 ~~~p~l~Rei 109 (165)
T PF08167_consen 100 RGKPTLTREI 109 (165)
T ss_pred cCCCchHHHH
Confidence 4567665554
No 38
>KOG1967|consensus
Probab=79.70 E-value=92 Score=33.35 Aligned_cols=219 Identities=16% Similarity=0.224 Sum_probs=120.8
Q ss_pred hcCChHhHHHHHHHHH---H---HhcCCChHHHHHHHhcc-----CCchHHHHHHHHHHHHH-HhhccCCCCHHHHHHHH
Q psy13179 34 YTGMGVEQKAAQEVLT---A---LKEHPDAWTRVDTILEY-----SSNQQTKFYALQILEQV-IKTRWKALPREQCDGIK 101 (352)
Q Consensus 34 ~~~~~~~r~~A~~~L~---~---fk~~p~~w~~~~~iL~~-----s~~~~vrffal~~L~~~-I~~~W~~l~~e~k~~ik 101 (352)
|.++.+.+.+|.+.|- + .+++|++-.+...++.. -.++.++-|....-+.- +.++- .. .+-|.-.|
T Consensus 784 y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~-~~-a~~riLyk 861 (1030)
T KOG1967|consen 784 YCGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRK-GH-AEPRILYK 861 (1030)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhc-cc-cchhHHHH
Confidence 4445555666665443 2 45677777777776532 12455565654444432 22221 11 12223344
Q ss_pred HHH----HHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhh-hhHHHHHHHhHHHHh
Q psy13179 102 KYI----VGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESL-CQNNMVILKLLSEEV 176 (352)
Q Consensus 102 ~~l----l~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~-~~~~l~iL~~L~eEv 176 (352)
+.. +..+.+... .++......|+..++.++..+-+.---.+-|++++=+++.++-.+.. ....++.+..+-.|-
T Consensus 862 QRfF~~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 444 344443322 11112234466888888887777655567888999999988765422 233445555444331
Q ss_pred hccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhccccCcchhhc--ccchHHHHHHhh
Q psy13179 177 FDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSN--ASLVGATLETLLRFLNWIPLGYIF--ETNLITTLIEKF 252 (352)
Q Consensus 177 ~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~--~~l~~~~L~~l~~~l~Wi~~~~i~--~~~ll~~l~~~~ 252 (352)
. .+ +..+...++..+..+=..+.+ ..+...+|+|++......|...+. .+..+..+ ...
T Consensus 941 ~-----tL-----------~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al-~k~ 1003 (1030)
T KOG1967|consen 941 E-----TL-----------QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRAL-IKI 1003 (1030)
T ss_pred c-----cc-----------chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHh-hhc
Confidence 1 11 223344455544433222222 456788999999998888887653 45677776 677
Q ss_pred cCch--hhHHHHHHHHHHHHhc
Q psy13179 253 LNVP--LFRNVTLKCLTEIAAV 272 (352)
Q Consensus 253 l~~~--~~~~~al~cL~ei~~~ 272 (352)
++|+ -+|..|.+|=.+....
T Consensus 1004 LdDkKRlVR~eAv~tR~~W~~l 1025 (1030)
T KOG1967|consen 1004 LDDKKRLVRKEAVDTRQNWYML 1025 (1030)
T ss_pred cCcHHHHHHHHHHHHhhhhhhc
Confidence 7775 5788888876554443
No 39
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=79.69 E-value=35 Score=32.76 Aligned_cols=135 Identities=19% Similarity=0.294 Sum_probs=67.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CChH-------HHHHHHHHHHhccccCcchhhcccc---hHHHHHHhhc--Cc--
Q psy13179 191 HLKDSMCLQFSQIFTLCQFVLDNS-SNAS-------LVGATLETLLRFLNWIPLGYIFETN---LITTLIEKFL--NV-- 255 (352)
Q Consensus 191 ~lk~~l~~~~~~i~~l~~~iL~~~-~~~~-------l~~~~L~~l~~~l~Wi~~~~i~~~~---ll~~l~~~~l--~~-- 255 (352)
.+-+.+.+.+..++......+... .++. ....+++++.+ +++.+++.+|+.+ |++.+ ..++ ++
T Consensus 20 ~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~s-L~~~DLPe~fed~l~~wm~~f-~~~L~~~~p~ 97 (370)
T PF08506_consen 20 YVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYS-LNCQDLPEFFEDNLSEWMEIF-HKYLTYPNPA 97 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHH-HHSSS--HHHHHTHHHHHHHH-HHHHH--SGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-HccCcCcHHHHHHHHHHHHHH-HHHHcCCCcc
Confidence 334455566666666666666543 2222 23334444433 4677777777754 55543 3344 11
Q ss_pred ------------hhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHH
Q psy13179 256 ------------PLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLA 323 (352)
Q Consensus 256 ------------~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~ 323 (352)
+.++..+|+++.-.. .+|++.+..+.+.+++.++.++-. ..... ....++.+.-
T Consensus 98 l~~~d~~e~~~l~kvK~~i~~~~~ly~------~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~-------~~D~lv~~al 163 (370)
T PF08506_consen 98 LEEDDDDEPGLLEKVKAWICENLNLYA------EKYEEEFEPFLPTFVQAVWNLLTK-ISQQP-------KYDILVSKAL 163 (370)
T ss_dssp G-TT-SSS--HHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHTC---SSG-------GGHHHHHHHH
T ss_pred cCCCCcccccHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-hhhcc-------cccHHHHHHH
Confidence 233344455554433 456777766777777777765532 11111 1234677777
Q ss_pred HHHHHHHHH--hhhhhcCCC
Q psy13179 324 MFLCTFLKE--HGSLIEKKS 341 (352)
Q Consensus 324 ~~l~~f~~~--~~~~le~~~ 341 (352)
.|++++.+. |...+++.+
T Consensus 164 ~FL~~v~~~~~~~~lf~~~~ 183 (370)
T PF08506_consen 164 QFLSSVAESPHHKNLFENKP 183 (370)
T ss_dssp HHHHHHHTSHHHHTTT-SHH
T ss_pred HHHHHHHcchhHHHHhCCHH
Confidence 888876655 333665433
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=78.28 E-value=96 Score=32.80 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHhc-CCC-hHHHHHHHhc--cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTALKE-HPD-AWTRVDTILE--YSSNQQTKFYALQILEQVIKTRWKALPREQCDGI 100 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~-~w~~~~~iL~--~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i 100 (352)
.+-.++..+-+++-+.|+-..-+|..+-+ .|+ +...+-.+.. .++++.+|-.|+.++-..-. ..+
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i 137 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSV 137 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHH
Confidence 34455555555566678889999988766 576 4344444432 24688999999888766221 123
Q ss_pred HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcc--hhHHHHHHhccc-ChhhhhHHHHHHHhHHHH
Q psy13179 101 KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQ--SFIPDIVGASKT-NESLCQNNMVILKLLSEE 175 (352)
Q Consensus 101 k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp--~fi~~l~~~~~~-~~~~~~~~l~iL~~L~eE 175 (352)
-+.+...+.+...+ .++.++.+.+.++..+... .|+.-+ +|++++..++.. ++...-+++..|..+.++
T Consensus 138 ~e~l~~~lkk~L~D-----~~pYVRKtAalai~Kly~~-~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 138 LEYTLEPLRRAVAD-----PDPYVRKTAAMGLGKLFHD-DMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhh-CcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 34455555544332 4566778888899988765 454322 455666665543 334556677777666543
No 41
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=78.07 E-value=30 Score=26.83 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH--HHHHHHHHHhcCC
Q psy13179 40 EQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK--KYIVGLIIKTSST 114 (352)
Q Consensus 40 ~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik--~~ll~~l~~~~~~ 114 (352)
......+++.-..+.++....+...|. .+.++.+.+.|+.+|+..+++.= +.-...++ .++.+++.....+
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g----~~f~~~i~~~~~~~~l~~~~~~~ 92 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCG----ERFHQEVASNDFAVELLKFDKSK 92 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc----HHHHHHHHHhHHHHHHHHhhccc
Confidence 344555666666666665555555432 24589999999999999999743 33333343 3333433210000
Q ss_pred cchhhhhHHHHHHHHHHHHH
Q psy13179 115 PETLEREKMYLNKLNMILVQ 134 (352)
Q Consensus 115 ~~~~~~~~~~~~kl~~~l~~ 134 (352)
......+..+++|+-.++..
T Consensus 93 ~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 93 LLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred cccCCCChHHHHHHHHHHHH
Confidence 00012345566777666543
No 42
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.88 E-value=59 Score=29.59 Aligned_cols=72 Identities=28% Similarity=0.297 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhccCC
Q psy13179 201 SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 201 ~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~ 275 (352)
.+++.++..+|++ +.+.+...+|++++.++.-++...-..++++..+ .+++.. ++...|++.|.++++...+
T Consensus 187 ~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispl-lrlL~t-~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 187 FQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMRSPHGADLISPL-LRLLQT-DLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCCCCcchHHHHHH-HHHhCC-ccHHHHHHHHHHHHhhccc
Confidence 4567777788876 4567889999999999999988766777888887 577754 6889999999999987654
No 43
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.37 E-value=44 Score=27.92 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=74.6
Q ss_pred chhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHH
Q psy13179 145 QSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGAT 223 (352)
Q Consensus 145 p~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~ 223 (352)
..+...+.++++++ ...+-.|+.+++.+.++.. .+.|.++....++.+..+|++.+.+.+.+.+
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---------------~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~a 88 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---------------WEILLSHGSQWLRALLSILEKPDPPSVLEAA 88 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34444455555543 3456678889988887510 1336566667778888899887778888889
Q ss_pred HHHHHhccccCc-ch----hhcccc---hHHHHHHhhcCchhhHHHHHHHHHHHHhccCC
Q psy13179 224 LETLLRFLNWIP-LG----YIFETN---LITTLIEKFLNVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 224 L~~l~~~l~Wi~-~~----~i~~~~---ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~ 275 (352)
..++...+..+. .. .+..+. +++.+ ...++++...+.++++|..++...+.
T Consensus 89 i~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~l-l~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 89 IITLTRLFDLIRGKPTLTREIATPNLPKFIQSL-LQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHHHhcCCCchHHHHhhccHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHCCc
Confidence 999988876642 11 222332 44443 34445567888999999998876554
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=75.88 E-value=83 Score=30.84 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHH
Q psy13179 44 AQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95 (352)
Q Consensus 44 A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e 95 (352)
++-+.+.....|+.|.....+|.+ ++..+..-|+.+|-..+..+=...+.+
T Consensus 89 ~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~~~~~~~~~ 139 (429)
T cd00256 89 VKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACFGLAKMEGS 139 (429)
T ss_pred HHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhcCccccchh
Confidence 444455444568888888888864 577888888888888876443333333
No 45
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=75.67 E-value=29 Score=34.14 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchh-----hcccchHHHHHHhhc--CchhhHHHHHHHHHHHHhccCC
Q psy13179 203 IFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGY-----IFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 203 i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~-----i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~~ 275 (352)
+...+..+-.+.++|.-..-.+++++..+....-+. -++..+++.+ ...+ +..++-..+.+.|..+++.+.+
T Consensus 72 L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f-~~ILq~dV~EF~PYvfQIla~Lle~~~~ 150 (435)
T PF03378_consen 72 LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF-QEILQQDVQEFIPYVFQILAQLLELRPS 150 (435)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH-HHHHHTT-TTTHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444444555667888888888898888877754221 2445566664 4555 3468888899999988888762
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcC
Q psy13179 276 YSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEK 339 (352)
Q Consensus 276 ~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~~~~~~~le~ 339 (352)
....+.+..+|..++. + .-|.. ..-+-.+..++++|++.+...+..
T Consensus 151 -~~~p~~y~~L~~~Ll~-------p-~lWe~---------~gniPalvrLL~a~i~k~~~~i~~ 196 (435)
T PF03378_consen 151 -SPLPDAYKQLFPPLLS-------P-ALWER---------RGNIPALVRLLQAYIKKDPSFIVA 196 (435)
T ss_dssp --S--TTTGGGHHHHTS-------G-GGGGS---------TTTHHHHHHHHHHHHHHHGGG---
T ss_pred -CCCcHHHHHHHHHHcC-------c-chhcc---------CCCcCcHHHHHHHHHHhCchhhcc
Confidence 1111223345554431 1 11211 113467899999999998765543
No 46
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=74.98 E-value=5.7 Score=22.99 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=19.2
Q ss_pred HHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 245 ITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 245 l~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
++.+ .+.+ .++.+|..|+.||.+++.
T Consensus 2 lp~l-~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPIL-LQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHH-HHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4444 3444 467999999999999875
No 47
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=74.91 E-value=44 Score=27.20 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhcc
Q psy13179 26 LDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRW 89 (352)
Q Consensus 26 L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W 89 (352)
++..|+.+-++. .+.-.-.-++++....+|++-..+...+. .+.++.+..+|+.+|+..+++.=
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG 70 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG 70 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 455555555542 22455566777777777766666655542 26789999999999999999743
No 48
>KOG2956|consensus
Probab=71.49 E-value=1.1e+02 Score=30.22 Aligned_cols=57 Identities=11% Similarity=0.279 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHhccccCcchhhcc--cchHHHHHHhhcC-chhhHHHHHHHHHHHHhc
Q psy13179 216 NASLVGATLETLLRFLNWIPLGYIFE--TNLITTLIEKFLN-VPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 216 ~~~l~~~~L~~l~~~l~Wi~~~~i~~--~~ll~~l~~~~l~-~~~~~~~al~cL~ei~~~ 272 (352)
+.....++++++...+.-++.+.+.+ +++.+.++..|=+ ...+|-.|+=||+.++.+
T Consensus 419 D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 419 DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 34455678899999988888776543 4677776555543 568899999999999865
No 49
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=68.78 E-value=1e+02 Score=28.67 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=81.2
Q ss_pred ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHH
Q psy13179 56 DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQV 135 (352)
Q Consensus 56 ~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I 135 (352)
+.|.....++.+ ++..++.-|+.+|-..+...=..-.... .++=..+++++.+... ..+..+..-..++++.+
T Consensus 105 ~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~-----~~~~~~~~~av~~L~~L 177 (312)
T PF03224_consen 105 DPYSPFLKLLDR-NDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLS-----SSDSELQYIAVQCLQNL 177 (312)
T ss_dssp --HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT------HHHH---HHHHHHHHHH
T ss_pred hhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHH
Confidence 378888886654 4899999999999998875433222212 2333667777765321 12333445556677777
Q ss_pred HHhH-cCC-Cc-chhHHHHHHhc-----ccCh---hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHH
Q psy13179 136 LKRE-WPK-NW-QSFIPDIVGAS-----KTNE---SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIF 204 (352)
Q Consensus 136 ~~~~-~P~-~W-p~fi~~l~~~~-----~~~~---~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~ 204 (352)
++.. +-. -| .+.++.+.+.+ .++. ......+-++=.|+ |+. ...+.|.... ++
T Consensus 178 L~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-----F~~---------~~~~~~~~~~--~i 241 (312)
T PF03224_consen 178 LRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS-----FEP---------EIAEELNKKY--LI 241 (312)
T ss_dssp HTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT-----TSH---------HHHHHHHTTS--HH
T ss_pred hCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-----cCH---------HHHHHHhccc--hH
Confidence 6653 111 13 34555555554 1111 11122222322222 321 1122233333 67
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccccCc
Q psy13179 205 TLCQFVLDNSSNASLVGATLETLLRFLNWIP 235 (352)
Q Consensus 205 ~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~ 235 (352)
..+..++..+..+.+++.++.+++.+++-.+
T Consensus 242 ~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 242 PLLADILKDSIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence 7777788887888999999999999877655
No 50
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=68.06 E-value=1.5e+02 Score=30.59 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=47.8
Q ss_pred hcCChHhHHHHHHHHHHHhc-CC--ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 34 YTGMGVEQKAAQEVLTALKE-HP--DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 34 ~~~~~~~r~~A~~~L~~fk~-~p--~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
++|++..|..+.+.+..+-. .| ..+.+...+|.++..+.+|-.++..+|+-|...|..-+
T Consensus 452 ~~p~~~lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~c~~~~~k~~~I~~lKd~i~~a~~~~~ 514 (633)
T PF08568_consen 452 YCPSPELRKIAFTLLTRILHLFPEETRFKFIRDLLENCPFESLKASAIGWLKDEILKALQSSD 514 (633)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCcHhHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHHhccCC
Confidence 46777788888888877544 23 46778888899999999999999999999988876544
No 51
>KOG1991|consensus
Probab=66.51 E-value=1.9e+02 Score=31.19 Aligned_cols=206 Identities=14% Similarity=0.145 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhh-HHHH-H-------------HHHHHH
Q psy13179 70 NQQTKFYALQILEQVIKTR--WKALPREQCDGIKKYIVGLIIKTSSTPETLERE-KMYL-N-------------KLNMIL 132 (352)
Q Consensus 70 ~~~vrffal~~L~~~I~~~--W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~-~~~~-~-------------kl~~~l 132 (352)
++.+-+++++.+++.|... |..+.|.-..-+...++..+.-...+....+.+ ..|+ . .....+
T Consensus 317 s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l 396 (1010)
T KOG1991|consen 317 SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFL 396 (1010)
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHH
Confidence 7899999999999988764 998888888888888887664322211111111 2233 2 223344
Q ss_pred HHHHHhHcCCCcchhHHHHHHhccc------C---hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhH-HH
Q psy13179 133 VQVLKREWPKNWQSFIPDIVGASKT------N---ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQF-SQ 202 (352)
Q Consensus 133 ~~I~~~~~P~~Wp~fi~~l~~~~~~------~---~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~-~~ 202 (352)
..++++--++.-|.+++.+.+.+.+ + .-..+.+|+++..|++ +..-. ...++.|..-. +.
T Consensus 397 ~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~-~L~K~---------s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 397 TTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLAS-ILLKK---------SPYKSQMEYFLVNH 466 (1010)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHH-HHccC---------CchHHHHHHHHHHH
Confidence 4555554567778777777666641 1 1234668899988883 33211 11233343321 33
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcc--ccCcchhhcccchHHHHHHhhcCc--hhhHHHHHHHHHHHHhccCCc-c
Q psy13179 203 IFTLCQFVLDNSSNASLVGATLETLLRFL--NWIPLGYIFETNLITTLIEKFLNV--PLFRNVTLKCLTEIAAVSGTY-S 277 (352)
Q Consensus 203 i~~l~~~iL~~~~~~~l~~~~L~~l~~~l--~Wi~~~~i~~~~ll~~l~~~~l~~--~~~~~~al~cL~ei~~~~~~~-~ 277 (352)
++..+ +++..-+...++.+++.|. .|-+.+. + .+.++.....+.++ -.++..|.-+|.-.++..... .
T Consensus 467 VfP~f-----~s~~g~Lrarac~vl~~~~~~df~d~~~-l-~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 467 VFPEF-----QSPYGYLRARACWVLSQFSSIDFKDPNN-L-SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred hhHhh-----cCchhHHHHHHHHHHHHHHhccCCChHH-H-HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 44433 2234467777888888774 3333221 1 12333322222322 356666666666666554321 2
Q ss_pred chHHHHHHHHHHHHH
Q psy13179 278 NYENVYVALFTTTMA 292 (352)
Q Consensus 278 ~~~~~~~~~f~~~l~ 292 (352)
+..++++.+.+.++.
T Consensus 540 ~~~~hvp~~mq~lL~ 554 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLK 554 (1010)
T ss_pred hHhhhhhHHHHHHHH
Confidence 233444444444433
No 52
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=65.59 E-value=92 Score=27.09 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHH-HHHHHHHHHHHHHHhHcCCCcc
Q psy13179 68 SSNQQTKFYALQILEQVIKTR-WKALPREQCDGIKKYIVGLIIKTSSTPETLEREKM-YLNKLNMILVQVLKREWPKNWQ 145 (352)
Q Consensus 68 s~~~~vrffal~~L~~~I~~~-W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~-~~~kl~~~l~~I~~~~~P~~Wp 145 (352)
+.+=..|.-|+..|+..++.+ =....+.-...+|+.+ ..+.... .+.++ +....+.++..++.+.- ....
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~-~~i~~~l------~d~Rs~v~~~A~~~l~~l~~~l~-~~~~ 89 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLL-DAIIKQL------SDLRSKVSKTACQLLSDLARQLG-SHFE 89 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-------HH---HHHHHHHHHHHHHHHHG-GGGH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhH-HHHHHHH------hhhHHHHHHHHHHHHHHHHHHHh-HhHH
Confidence 344466777888888888876 1123334445555333 3333221 12333 44778888888887742 2333
Q ss_pred hhH----HHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHH-HHHHHHHHhcCCChHH
Q psy13179 146 SFI----PDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQI-FTLCQFVLDNSSNASL 219 (352)
Q Consensus 146 ~fi----~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i-~~l~~~iL~~~~~~~l 219 (352)
.++ +-++..+..+ ....+.+...|..+.+-+. + .+.+ +..+.... .+.++.+
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------------------~~~~~~~~l~~~~-~~Kn~~v 147 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------------------SPKILLEILSQGL-KSKNPQV 147 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------------------HHHHHHHHHHT-T-S-HHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------------------HHHHHHHHHHHHH-hCCCHHH
Confidence 333 3333333322 2233334444444432110 0 0122 22222222 3467888
Q ss_pred HHHHHHHHHhccccCc--chhhcc----cchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 220 VGATLETLLRFLNWIP--LGYIFE----TNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 220 ~~~~L~~l~~~l~Wi~--~~~i~~----~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
...+++++...+.-.+ ...+-. +.+++.+ ...+ .++++|..|-+|+..+.+.
T Consensus 148 R~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l-~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 148 REECAEWLAIILEKWGSDSSVLQKSAFLKQLVKAL-VKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHTT-----GGG--HHHHHHHHHHH-HHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHhhhcccchHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888888888765444 222222 2355555 5555 4689999999999888644
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=64.75 E-value=58 Score=24.48 Aligned_cols=70 Identities=9% Similarity=-0.008 Sum_probs=40.9
Q ss_pred CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHH-HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHH
Q psy13179 55 PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD-GIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133 (352)
Q Consensus 55 p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~-~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~ 133 (352)
.+.+..+..++.. +++.++..++.+|.+...... +.+. .++..++..+.+.-.+ .+..++...+.++.
T Consensus 48 ~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~g~l~~l~~~l~~-----~~~~~~~~a~~~l~ 116 (120)
T cd00020 48 AGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPE-----DNKLIVLEAGGVPKLVNLLDS-----SNEDIQKNATGALS 116 (120)
T ss_pred CCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcH-----HHHHHHHHCCChHHHHHHHhc-----CCHHHHHHHHHHHH
Confidence 3777778888764 578999999999999876422 2222 2333345545443221 23445555555555
Q ss_pred HH
Q psy13179 134 QV 135 (352)
Q Consensus 134 ~I 135 (352)
.+
T Consensus 117 ~l 118 (120)
T cd00020 117 NL 118 (120)
T ss_pred Hh
Confidence 44
No 54
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=64.10 E-value=88 Score=26.36 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=54.9
Q ss_pred cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcch
Q psy13179 67 YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQS 146 (352)
Q Consensus 67 ~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~ 146 (352)
++.++.||--|+.+|.+.+...+-. .|..++..+.....| +++.+++-....+.++.+.-.|+.-.+
T Consensus 35 ~D~~~~VR~~al~~Ls~Li~~d~ik--------~k~~l~~~~l~~l~D-----~~~~Ir~~A~~~~~e~~~~~~~~~i~~ 101 (178)
T PF12717_consen 35 RDEDPLVRKTALLVLSHLILEDMIK--------VKGQLFSRILKLLVD-----ENPEIRSLARSFFSELLKKRNPNIIYN 101 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcee--------ehhhhhHHHHHHHcC-----CCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3568999999999999999865543 334443323332233 467788888889999999877877777
Q ss_pred hHHHHHHhccc
Q psy13179 147 FIPDIVGASKT 157 (352)
Q Consensus 147 fi~~l~~~~~~ 157 (352)
.|++++..++.
T Consensus 102 ~~~e~i~~l~~ 112 (178)
T PF12717_consen 102 NFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHhC
Confidence 78887776654
No 55
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=63.14 E-value=77 Score=25.37 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcch
Q psy13179 41 QKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPET 117 (352)
Q Consensus 41 r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~ 117 (352)
-...-++++.+..++.+-.-+...|. .+.++.++..|+.+|+..+++.=..+-.+ -.=|.++.+ +.....+.
T Consensus 18 ~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~--i~s~~fl~~-l~~l~~~~-- 92 (133)
T cd03561 18 WALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQ--VADKEFLLE-LVKIAKNS-- 92 (133)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHH--HhhHHHHHH-HHHHhCCC--
Confidence 44455566666666555554444432 24588999999999999998743222111 111445555 33332211
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q psy13179 118 LEREKMYLNKLNMILVQVL 136 (352)
Q Consensus 118 ~~~~~~~~~kl~~~l~~I~ 136 (352)
...+..+..|+..++-.-.
T Consensus 93 ~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 93 PKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 0234556677666665443
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=62.28 E-value=1.9e+02 Score=29.57 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcC--chhhHHHHHHHHHHH
Q psy13179 216 NASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLN--VPLFRNVTLKCLTEI 269 (352)
Q Consensus 216 ~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~--~~~~~~~al~cL~ei 269 (352)
+..+..+++.|+..|-- .++..+.+.-+..++.++++ ++++|+.|.-.|-.+
T Consensus 500 N~ivRsaAv~aLskf~l--n~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 500 NNIVRSAAVQALSKFAL--NISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred hhHHHHHHHHHHHHhcc--CccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 34566778888877622 23334444544444477775 578888775544333
No 57
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.16 E-value=90 Score=25.19 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 25 LLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 25 ~L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
.++..|..+-++. .+.-....++++....++++-..+...|. .+.++.++..|+.+|+..+++.
T Consensus 5 ~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 5 SITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 3566666665552 23456677888888888877777766653 2579999999999999999964
No 58
>KOG1241|consensus
Probab=59.22 E-value=2.4e+02 Score=29.74 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcch-hhcccchHHHHHHhhcCch----hhHHHHHHH
Q psy13179 191 HLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLG-YIFETNLITTLIEKFLNVP----LFRNVTLKC 265 (352)
Q Consensus 191 ~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~-~i~~~~ll~~l~~~~l~~~----~~~~~al~c 265 (352)
.+-..|.+.++.+..++..-|.+...-.++..+...++....-+..+ ..+-++++..| -..+.+| +++...+.|
T Consensus 627 ~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~L-vq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 627 SLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVL-VQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred HHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHccCccccccccchHHHH
Confidence 34456777888888888888877666667777776666654332211 11234566666 4556554 445788999
Q ss_pred HHHHHh
Q psy13179 266 LTEIAA 271 (352)
Q Consensus 266 L~ei~~ 271 (352)
+-.|+.
T Consensus 706 FgDIAl 711 (859)
T KOG1241|consen 706 FGDIAL 711 (859)
T ss_pred HHHHHH
Confidence 988874
No 59
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=58.72 E-value=67 Score=27.45 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCC--ChHHHHHHH--hccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHP--DAWTRVDTI--LEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p--~~w~~~~~i--L~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
+..+++...+++...|..|-+++...-+.- +++..+-.+ |..++++.+|--|...+++.-.++=+-+...-.+++|
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi~ 89 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGIR 89 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677888888888889999999999877643 556655555 5677899999999999988777765555555555555
Q ss_pred H
Q psy13179 102 K 102 (352)
Q Consensus 102 ~ 102 (352)
.
T Consensus 90 ~ 90 (187)
T PF12830_consen 90 L 90 (187)
T ss_pred H
Confidence 4
No 60
>KOG0168|consensus
Probab=57.83 E-value=1.8e+02 Score=31.11 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcch--hhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHhccCC
Q psy13179 202 QIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLG--YIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 202 ~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~--~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~~ 275 (352)
.+...+..+|....+.++.-.|.+++..++.=.|-+ .+++..-|+.|+.+++ .--++.+.+++.| |.+++..+
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqAL-E~iSR~H~ 287 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQAL-EKISRRHP 287 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHH-HHHHhhcc
Confidence 355555666666667899999999999888877743 4566667777655555 3457788888888 66666553
No 61
>KOG0212|consensus
Probab=57.44 E-value=1.9e+02 Score=29.33 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhhccCCCccc-HHHHHHHHHHH--------------
Q psy13179 132 LVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLT-QAKAKHLKDSM-------------- 196 (352)
Q Consensus 132 l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~-~~r~~~lk~~l-------------- 196 (352)
++.++|-+.+...+..++-++..+..++..+..+-..|-.|..|+..-+...+. +.-..-+++.+
T Consensus 111 iaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~W 190 (675)
T KOG0212|consen 111 IAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSW 190 (675)
T ss_pred HHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHH
Q ss_pred ------------HHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccC--cchhhcccchHHHHHHhhc-CchhhHHH
Q psy13179 197 ------------CLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWI--PLGYIFETNLITTLIEKFL-NVPLFRNV 261 (352)
Q Consensus 197 ------------~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi--~~~~i~~~~ll~~l~~~~l-~~~~~~~~ 261 (352)
....|.++.-+.+.|+. +++++...+=.++..|+.-| ..+.+--.+.++.+..+.- +.+.++..
T Consensus 191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD-~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~ 269 (675)
T KOG0212|consen 191 LYVLDSVPDLEMISYLPSLLDGLFNMLSD-SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLK 269 (675)
T ss_pred HHHHhcCCcHHHHhcchHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHH
Q ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCc
Q psy13179 262 TLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDI 302 (352)
Q Consensus 262 al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~ 302 (352)
|+.-+.|.+...+. .+......+++.+...++.+.
T Consensus 270 al~Wi~efV~i~g~------~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 270 ALTWIQEFVKIPGR------DLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHhcCCCc------chhhhhhhhhhhcccCCCCCc
No 62
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=55.94 E-value=1.1e+02 Score=24.88 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=40.7
Q ss_pred HHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHh----ccCCchHHHHHHHHHHHHHHhhcc
Q psy13179 27 DNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKTRW 89 (352)
Q Consensus 27 ~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL----~~s~~~~vrffal~~L~~~I~~~W 89 (352)
++.|+.+-+++ .+.-.-+-++++.+...+++-..+...| ..+.++.+..+|+.+|+..+++.=
T Consensus 3 ~~~IekATse~l~~~dw~~ileicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG 71 (141)
T cd03565 3 GQLIEKATDGSLQSEDWGLNMEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCG 71 (141)
T ss_pred hHHHHHHcCcCCCCcCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc
Confidence 44455444442 2245556677777766665555555543 345688999999999999998754
No 63
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=55.69 E-value=51 Score=25.84 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=44.7
Q ss_pred cCCCCHHHHHHHHHHHHH-----HHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhcccChhhh
Q psy13179 89 WKALPREQCDGIKKYIVG-----LIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGASKTNESLC 162 (352)
Q Consensus 89 W~~l~~e~k~~ik~~ll~-----~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~~~~~~~~ 162 (352)
+..|++|+...++.|+.. -+.+..+ -+.|.+++++..++..|....-+. .=+..-.++++.+..+.-..
T Consensus 31 ~~~L~~E~~~Fi~~Fi~~rGnlKe~e~~lg-----iSYPTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~ 105 (113)
T PF09862_consen 31 FARLSPEQLEFIKLFIKNRGNLKEMEKELG-----ISYPTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISV 105 (113)
T ss_pred hhcCCHHHHHHHHHHHHhcCCHHHHHHHHC-----CCcHHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCH
Confidence 357999999999998852 2222211 246788899999998888732222 22345555555555443333
Q ss_pred hHHHHH
Q psy13179 163 QNNMVI 168 (352)
Q Consensus 163 ~~~l~i 168 (352)
+-++.+
T Consensus 106 eeA~~~ 111 (113)
T PF09862_consen 106 EEALEI 111 (113)
T ss_pred HHHHHH
Confidence 333333
No 64
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=54.51 E-value=80 Score=23.71 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHH
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMIL 132 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l 132 (352)
++++.|..+-..++..... |+...+.+..++.+++..+
T Consensus 68 ~~~~~r~~~l~~l~~vA~A---DG~~~~~E~~~l~~ia~~L 105 (106)
T cd07316 68 GRPELLLQLLEFLFQIAYA---DGELSEAERELLRRIARLL 105 (106)
T ss_pred CCHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHc
Confidence 6888888888888887764 4444456677777777654
No 65
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=53.23 E-value=1.8e+02 Score=26.57 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchh---hcccchHHHHH------HhhcC-------chhhH
Q psy13179 196 MCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGY---IFETNLITTLI------EKFLN-------VPLFR 259 (352)
Q Consensus 196 l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~---i~~~~ll~~l~------~~~l~-------~~~~~ 259 (352)
+.+.++.++..+..++... .+......+.++.+++.=++... +..+++.+.+. ..|+. ...+-
T Consensus 113 i~~~~~liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred HHHhhhHHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 5566777777777777654 67888889999999888766655 55555444331 12231 24566
Q ss_pred HHHHHHHHHHHhc
Q psy13179 260 NVTLKCLTEIAAV 272 (352)
Q Consensus 260 ~~al~cL~ei~~~ 272 (352)
..|..||..++..
T Consensus 192 ~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 192 QAAYPALLSLLKT 204 (282)
T ss_pred HHHHHHHHHHHHh
Confidence 8888999988765
No 66
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=52.95 E-value=1.3e+02 Score=24.66 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=58.8
Q ss_pred HHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 27 DNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 27 ~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
++.|+.+-+++ .+.-.-.-++++.+..++++-..+...|. .+.++++..+|+.+|+..+++.=..+-.+- -.
T Consensus 2 e~~iekATse~l~~~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev---as 78 (144)
T cd03568 2 DDLVEKATDEKLTSENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV---AS 78 (144)
T ss_pred hHHHHHHcCccCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH---hh
Confidence 44455444442 22455567778888777776666666542 257899999999999999997443222111 11
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHH
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVL 136 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~ 136 (352)
...++-+.....+ ..+..+.+|+..++-.-+
T Consensus 79 k~Fl~eL~kl~~~----~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 79 RDFTQELKKLIND----RVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHH
Confidence 2222333333222 135566677766665433
No 67
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=52.71 E-value=3.1e+02 Score=29.07 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhc-CCChHHHHHH-Hhc--cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKE-HPDAWTRVDT-ILE--YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~~w~~~~~-iL~--~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
+-.++....+-+.+.|+-.+-+|..+-+ .|+-...+.. +.. .+.|+++|-+|++++-. +...+ +=
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~--------l~~~e---l~ 125 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSL--------LRVKE---LL 125 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh--------cChHH---HH
Confidence 3344444443455667778888888766 4543333333 332 25689999999988865 22221 33
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchh-HHHHH-Hhcc-cChhhhhHHHHHHHhHHHH
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSF-IPDIV-GASK-TNESLCQNNMVILKLLSEE 175 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~f-i~~l~-~~~~-~~~~~~~~~l~iL~~L~eE 175 (352)
..++..+.+...+ .++.++...+.+++.+.+.+ |+..++. ..++. .++. +++..+-+++.-|..+.+|
T Consensus 126 ~~~~~~ik~~l~d-----~~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 126 GNIIDPIKKLLTD-----PHAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHccC-----CcHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 4455566655443 34556688999999999765 4455554 44443 3333 3455667888888888888
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=52.12 E-value=91 Score=23.34 Aligned_cols=72 Identities=7% Similarity=0.052 Sum_probs=41.5
Q ss_pred ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHH-HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHH
Q psy13179 56 DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDG-IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQ 134 (352)
Q Consensus 56 ~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~-ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~ 134 (352)
+....+..++.. .+..+|..|+.+|.+.... +++.+.. ++..+++.+...-.+ .++.++...+.++..
T Consensus 7 ~~i~~l~~~l~~-~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~ 75 (120)
T cd00020 7 GGLPALVSLLSS-SDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKS-----EDEEVVKAALWALRN 75 (120)
T ss_pred CChHHHHHHHHc-CCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhC-----CCHHHHHHHHHHHHH
Confidence 345555566653 3478888888888886653 2333333 333555555544222 245566777777777
Q ss_pred HHHh
Q psy13179 135 VLKR 138 (352)
Q Consensus 135 I~~~ 138 (352)
++..
T Consensus 76 l~~~ 79 (120)
T cd00020 76 LAAG 79 (120)
T ss_pred HccC
Confidence 7654
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=51.71 E-value=1.6e+02 Score=25.51 Aligned_cols=108 Identities=17% Similarity=0.070 Sum_probs=56.0
Q ss_pred HHHHHHHHh----cCChHhHHHHHHHHHHHhcCCC-hHHHHHHHh---ccCCchHHHHHHHHHHHHHHhhccCCCCHHHH
Q psy13179 26 LDNIVECMY----TGMGVEQKAAQEVLTALKEHPD-AWTRVDTIL---EYSSNQQTKFYALQILEQVIKTRWKALPREQC 97 (352)
Q Consensus 26 L~~~v~~~~----~~~~~~r~~A~~~L~~fk~~p~-~w~~~~~iL---~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k 97 (352)
++.++..+. ++....++.|.+.|..+-+.-. .-.+...++ ..+.++.+|..++..+...+.+.+..-+.=.+
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 444444443 3334468899999999887655 233323333 45679999999999999999875511111112
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHh
Q psy13179 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKR 138 (352)
Q Consensus 98 ~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~ 138 (352)
...-..+...+.....| .++.++...-.++..+.+.
T Consensus 172 ~~~~~~l~~~l~~~l~D-----~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSD-----ADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTS-----S-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHH
Confidence 22224455555554443 3555665555555555443
No 70
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=49.54 E-value=1.6e+02 Score=24.78 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhc-CCChH-----HHHHHHhccCCchHHHHHHHHHHHHHHhh
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKE-HPDAW-----TRVDTILEYSSNQQTKFYALQILEQVIKT 87 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~~w-----~~~~~iL~~s~~~~vrffal~~L~~~I~~ 87 (352)
+..+...+.++++..|++|-..|.++-. ..--| ......+ ...++.+|-.|-..+.+...+
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHh
Confidence 3344455556777889999998888433 22111 1222223 346788999998888887765
No 71
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=45.77 E-value=1.1e+02 Score=24.14 Aligned_cols=68 Identities=10% Similarity=0.310 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHhc-CCChHHHHH---------HHhccCCchHHHHHHHHHHHHHHhhccC
Q psy13179 22 DITLLDNIVECMYTG-MGVEQKAAQEVLTALKE-HPDAWTRVD---------TILEYSSNQQTKFYALQILEQVIKTRWK 90 (352)
Q Consensus 22 di~~L~~~v~~~~~~-~~~~r~~A~~~L~~fk~-~p~~w~~~~---------~iL~~s~~~~vrffal~~L~~~I~~~W~ 90 (352)
|.+.+..++..+..+ ++....-|-.=+.+|-+ .|++-.++. .++ ++.+++||+-|+.++...+..+|.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHHHHS--
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCC
Confidence 566677777766444 22233333333444333 466555442 233 457999999999999999999994
No 72
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=43.47 E-value=2.6e+02 Score=25.63 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhc----------ccchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 205 TLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIF----------ETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 205 ~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~----------~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
.++...++. +++.+...+++++--++-|-+.+.+- ...+++++ .+++ .+++++..|+++++-++-.
T Consensus 67 ~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l-~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 67 PLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKIL-TKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 334444433 46777778888887776664433221 12356664 5555 3678999999999998877
Q ss_pred cCC
Q psy13179 273 SGT 275 (352)
Q Consensus 273 ~~~ 275 (352)
+.-
T Consensus 145 ~~i 147 (298)
T PF12719_consen 145 GRI 147 (298)
T ss_pred CCC
Confidence 654
No 73
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=42.46 E-value=77 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=22.1
Q ss_pred chHHHHHHhhc--CchhhHHHHHHHHHHHHhccC
Q psy13179 243 NLITTLIEKFL--NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 243 ~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~ 274 (352)
.+++.+ ...+ ++..+|-.||++|..|+...+
T Consensus 27 ~Il~pV-L~~~~D~d~rVRy~AcEaL~ni~k~~~ 59 (97)
T PF12755_consen 27 EILPPV-LKCFDDQDSRVRYYACEALYNISKVAR 59 (97)
T ss_pred HHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 466665 3445 457889999999999985543
No 74
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=41.63 E-value=1.7e+02 Score=27.10 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhc---ccChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHH
Q psy13179 121 EKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGAS---KTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSM 196 (352)
Q Consensus 121 ~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~---~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l 196 (352)
++.++..+-.-|--|+...||. .||.+.|.--.-. .=+++...+.|.+|..+.+--.++. -++..++.+.++++
T Consensus 57 d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~--~v~~~~~~r~~~A~ 134 (289)
T PF09492_consen 57 DPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFA--FVDESLRARARAAV 134 (289)
T ss_dssp -HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTST--TS-HHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCcc--ccCHHHHHHHHHHH
Confidence 4556666666667777777776 5776655522211 1234455566777776665433332 34566666667666
Q ss_pred HHhHHHHH
Q psy13179 197 CLQFSQIF 204 (352)
Q Consensus 197 ~~~~~~i~ 204 (352)
...+.-|+
T Consensus 135 ~kgi~ciL 142 (289)
T PF09492_consen 135 DKGIDCIL 142 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
No 75
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=40.79 E-value=3.9e+02 Score=26.78 Aligned_cols=230 Identities=12% Similarity=0.171 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHH-----HHHh---ccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRV-----DTIL---EYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~-----~~iL---~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
+.+.+..++..+-+++.+..+.|-+.|..+-+++.....+ ..-| -...+..+|+=.+.++-+.-+ .+
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-----~S 191 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-----HS 191 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-----cC
Confidence 4556777777887788888888999999988777655443 2212 122355666655555555443 45
Q ss_pred HHHHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc---chhHHHHHHhcccChhh-hhHHHHH
Q psy13179 94 REQCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW---QSFIPDIVGASKTNESL-CQNNMVI 168 (352)
Q Consensus 94 ~e~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W---p~fi~~l~~~~~~~~~~-~~~~l~i 168 (352)
++....+.+ -+++.+...-. ..+..+.--...++..++.....-.| .+.++.+.+.+..+... ....+.+
T Consensus 192 ~~~~~~~~~sgll~~ll~eL~-----~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l 266 (503)
T PF10508_consen 192 PEAAEAVVNSGLLDLLLKELD-----SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLL 266 (503)
T ss_pred HHHHHHHHhccHHHHHHHHhc-----CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhh
Confidence 666555553 35555554322 12333335667788888874322111 23555555554322111 1122222
Q ss_pred HHhH--HHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhc--c-c-
Q psy13179 169 LKLL--SEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIF--E-T- 242 (352)
Q Consensus 169 L~~L--~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~--~-~- 242 (352)
...+ ...+... .+ ..+...+|.+...+...++ +.++.....|+++++.+-+-..-...+ . .
T Consensus 267 ~g~~~f~g~la~~-----~~-------~~v~~~~p~~~~~l~~~~~-s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~ 333 (503)
T PF10508_consen 267 PGRMKFFGNLARV-----SP-------QEVLELYPAFLERLFSMLE-SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP 333 (503)
T ss_pred hhHHHHHHHHHhc-----Ch-------HHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 2211 1111111 00 0122334555554444443 367778888999998876554321222 1 1
Q ss_pred ---chHHHHHHhhc--CchhhHHHHHHHHHHHHhccCC
Q psy13179 243 ---NLITTLIEKFL--NVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 243 ---~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~~ 275 (352)
..+..+ ..+. ...++|..+++||..|+..+..
T Consensus 334 ~~~~~l~~~-~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 334 AMKHVLKAI-GDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 134433 3333 2357999999999999877654
No 76
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=38.22 E-value=5e+02 Score=27.37 Aligned_cols=213 Identities=20% Similarity=0.272 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGI 100 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i 100 (352)
-++..++..++.+|... +++-++...+-++-+.|+.-... .++ + -.+++|-..++..|.. +.+-...|
T Consensus 120 a~~~~~d~yiE~lYe~~-~ek~~~~~~il~La~~~~NL~~l---~~n----e---~l~~aL~RvLred~~k-s~~l~tnI 187 (708)
T PF05804_consen 120 ASINDLDEYIELLYEDI-PEKIRGTSLILQLARNPENLEEL---VQN----E---TLMSALARVLREDWKK-SVELATNI 187 (708)
T ss_pred CCHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCcchHHHH---HHh----H---HHHHHHHHHHHHHhhh-hHHHHHHH
Confidence 47899999999999864 45556667777888888765532 222 1 2456777788888876 43333333
Q ss_pred HHHHHHHHHHhcCCcchhhhhHHHH-HHHHHHHHHHHHhHcC--CCcchhHHHHHHhccc--------------------
Q psy13179 101 KKYIVGLIIKTSSTPETLEREKMYL-NKLNMILVQVLKREWP--KNWQSFIPDIVGASKT-------------------- 157 (352)
Q Consensus 101 k~~ll~~l~~~~~~~~~~~~~~~~~-~kl~~~l~~I~~~~~P--~~Wp~fi~~l~~~~~~-------------------- 157 (352)
-. ++-.+.+++ +-++.+. .|++.+...|+-++-- +.|..=+...-.....
T Consensus 188 ~~-iF~~fS~f~------~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~ 260 (708)
T PF05804_consen 188 IY-IFFCFSNFS------QFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIR 260 (708)
T ss_pred HH-HHHHHHhHH------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHH
Confidence 22 222222221 2244455 8999999999887642 2453221111111100
Q ss_pred -ChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccc-Cc
Q psy13179 158 -NESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNW-IP 235 (352)
Q Consensus 158 -~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~W-i~ 235 (352)
.+.....++.+|..++|+.- .+..|.+ ..++.++..+|+. ++.++...++.+++..--. -.
T Consensus 261 kQeqLlrv~~~lLlNLAed~~--------------ve~kM~~--~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~EN 323 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNLAEDPR--------------VELKMVN--KGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKEN 323 (708)
T ss_pred HHHHHHHHHHHHHHHHhcChH--------------HHHHHHh--cCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 01111123344444544311 0111211 2355555666654 4667777777777664211 11
Q ss_pred chhhcccchHHHHHHhhcC--chhhHHHHHHHHHHHH
Q psy13179 236 LGYIFETNLITTLIEKFLN--VPLFRNVTLKCLTEIA 270 (352)
Q Consensus 236 ~~~i~~~~ll~~l~~~~l~--~~~~~~~al~cL~ei~ 270 (352)
.+.+...+.++.+ .+++. ++.+...|+..|..+.
T Consensus 324 K~~m~~~giV~kL-~kLl~s~~~~l~~~aLrlL~NLS 359 (708)
T PF05804_consen 324 KDEMAESGIVEKL-LKLLPSENEDLVNVALRLLFNLS 359 (708)
T ss_pred HHHHHHcCCHHHH-HHHhcCCCHHHHHHHHHHHHHhC
Confidence 2344455666665 45553 3456666666665543
No 77
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=38.21 E-value=1.9e+02 Score=22.38 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHhHHHHhhccCCCcccHHHHHHHH------H----HHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccc
Q psy13179 164 NNMVILKLLSEEVFDFSGGQLTQAKAKHLK------D----SMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNW 233 (352)
Q Consensus 164 ~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk------~----~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~W 233 (352)
..|-++..+++.+.+.+...-..+|.+.++ + .+....|+|...+...| ..+++...+++|...++.-
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL---~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSAL---EIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHHh
Confidence 456788888888777542111123322222 1 22223356655555555 4678999999999998887
Q ss_pred Ccchh
Q psy13179 234 IPLGY 238 (352)
Q Consensus 234 i~~~~ 238 (352)
++.+.
T Consensus 85 L~~~~ 89 (107)
T smart00802 85 LKEEE 89 (107)
T ss_pred CCHHH
Confidence 76543
No 78
>KOG1993|consensus
Probab=37.66 E-value=4.1e+02 Score=28.33 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhc-------CCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy13179 41 QKAAQEVLTALKE-------HPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSS 113 (352)
Q Consensus 41 r~~A~~~L~~fk~-------~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~ 113 (352)
|+..--++.++-. .|-.+..+..+|+..++.-||.-++++++-.|. .|+- +++.-..+...++..+.+.-.
T Consensus 504 RRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vD-D~nF-~~dsFlp~lenlf~~lfkll~ 581 (978)
T KOG1993|consen 504 RRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVD-DWNF-SEDSFLPYLENLFVLLFKLLK 581 (978)
T ss_pred HHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhh-hccC-ChhhhhhhHHHHHHHHHHHHH
Confidence 5554445555433 234566677778777788999999999998886 6874 555555555666555443211
Q ss_pred CcchhhhhHHHH-HHHHHHHHHHHHh
Q psy13179 114 TPETLEREKMYL-NKLNMILVQVLKR 138 (352)
Q Consensus 114 ~~~~~~~~~~~~-~kl~~~l~~I~~~ 138 (352)
..... ..+..+ +-++.++...-.+
T Consensus 582 ~~~e~-Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 582 AVEEC-DTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHhhh-hhHHHHHHHHHHHHHHHHHh
Confidence 00001 223333 6666555555444
No 79
>KOG2022|consensus
Probab=35.93 E-value=5.9e+02 Score=27.49 Aligned_cols=73 Identities=11% Similarity=0.171 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhcc
Q psy13179 200 FSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 200 ~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~ 273 (352)
++..|+.+..+=-...++++.+.+...++++..|.--....-+..++++ ++-+++++....++..|..++...
T Consensus 506 i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L-~~~Lh~sk~s~q~i~tl~tlC~~C 578 (982)
T KOG2022|consen 506 IPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLL-FQGLHNSKESEQAISTLKTLCETC 578 (982)
T ss_pred HHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHH-HHHhcCchHHHHHHHHHHHHHHhh
Confidence 4455555544332334899999999999999999643323333577776 566777788888888887777543
No 80
>KOG2199|consensus
Probab=35.26 E-value=4.3e+02 Score=25.65 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 25 LLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 25 ~L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
-+++.|.-+-++. .+.-.-+-.+|.++..+|+.-.-|...+. +..+++|...|++++...+.+.=..
T Consensus 8 ~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~ 79 (462)
T KOG2199|consen 8 PFEQDVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR 79 (462)
T ss_pred hHHHHHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH
Confidence 4677777666663 34455688899999999999998888764 2579999999999999988865443
No 81
>KOG1020|consensus
Probab=34.96 E-value=2.6e+02 Score=31.95 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=45.2
Q ss_pred HHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc-CchhhHHHHHHHHHHHH
Q psy13179 197 CLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL-NVPLFRNVTLKCLTEIA 270 (352)
Q Consensus 197 ~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l-~~~~~~~~al~cL~ei~ 270 (352)
...|...+.++..+|. .+.+.+...|++|+...++ +|......++.-..+-.++. +...+|++|++-+-..+
T Consensus 811 ~~sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive-~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfv 883 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSVLG-ENAIALRTKALKCLSMIVE-ADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFV 883 (1692)
T ss_pred HHhhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHh-cChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhh
Confidence 3444555555556665 3567889999999988765 45445455555555434444 34578888888776433
No 82
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.51 E-value=2.2e+02 Score=22.09 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhcc
Q psy13179 200 FSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 200 ~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~ 273 (352)
.+.+++.+...|.....+++...++-++....+=.|++.-.-..++..+ ...+........++-||..+....
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i-~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESI-LKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHHcc
Confidence 4667777778887666788888888888877776776543323344444 222333223578999999998665
No 83
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=34.44 E-value=62 Score=20.81 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHh
Q psy13179 95 EQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKR 138 (352)
Q Consensus 95 e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~ 138 (352)
.+.+.+|+-+++++... ++.-+.++..+++.+.+.
T Consensus 3 ~~~eYLKNvl~~fl~~~---------~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESR---------EPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHHTTS---------S---HHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHhcCC---------chhhHHHHHHHHHHHHCC
Confidence 46789999999999642 234456677788877764
No 84
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.39 E-value=2.1e+02 Score=23.82 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHhcccc-Ccchhhc-ccchHHHHHHhhc--CchhhHHHHHHHHHHHH
Q psy13179 216 NASLVGATLETLLRFLNW-IPLGYIF-ETNLITTLIEKFL--NVPLFRNVTLKCLTEIA 270 (352)
Q Consensus 216 ~~~l~~~~L~~l~~~l~W-i~~~~i~-~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~ 270 (352)
+..+...++.|++..++- .....++ .++.+..+ ...+ .++.+|..|++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i-~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLI-ALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHH-HHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH
Confidence 446778888999887664 2234444 35677776 4445 45788899999988765
No 85
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.36 E-value=2.7e+02 Score=23.02 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHh
Q psy13179 70 NQQTKFYALQILEQVIKTRWKALP-----REQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKR 138 (352)
Q Consensus 70 ~~~vrffal~~L~~~I~~~W~~l~-----~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~ 138 (352)
+...|-+|+.+++..+...=..+. ++-...+|+.+...+.+.... .+..+......++..++.+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~-----~~~~i~~~slri~~~l~~~ 103 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS-----SDFPIFSRSLRIFLTLLSR 103 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHH
Confidence 567899999999999987533222 367888899998888875421 2333444455555555443
No 86
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=33.20 E-value=2.1e+02 Score=21.39 Aligned_cols=92 Identities=11% Similarity=0.163 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHhcc--CCchHHHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy13179 41 QKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKF----YALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSST 114 (352)
Q Consensus 41 r~~A~~~L~~fk~~p~~w~~~~~iL~~--s~~~~vrf----fal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~ 114 (352)
+++..++|.++.+.|.+|.....+-.. .-+.+-.. ..+.+++.++..+=-.=..+-+..++.-.-+...-
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y---- 77 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRY---- 77 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH----
Confidence 456788999999999888664333111 11222222 46789999887653333444455555544444332
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHc
Q psy13179 115 PETLEREKMYLNKLNMILVQVLKREW 140 (352)
Q Consensus 115 ~~~~~~~~~~~~kl~~~l~~I~~~~~ 140 (352)
.++.+.+.++|..+-..+...|
T Consensus 78 ----n~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 78 ----NPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHhC
Confidence 2344456777777777776654
No 87
>KOG4535|consensus
Probab=32.30 E-value=1.7e+02 Score=29.24 Aligned_cols=137 Identities=15% Similarity=0.205 Sum_probs=78.7
Q ss_pred HHHHHHhHcCCCcchhHHHHHHhcc----------cChhhhhHHHHHHHhHHHHhh-------ccCCCcccHHHHHHHHH
Q psy13179 132 LVQVLKREWPKNWQSFIPDIVGASK----------TNESLCQNNMVILKLLSEEVF-------DFSGGQLTQAKAKHLKD 194 (352)
Q Consensus 132 l~~I~~~~~P~~Wp~fi~~l~~~~~----------~~~~~~~~~l~iL~~L~eEv~-------~~~~~~l~~~r~~~lk~ 194 (352)
+-.|-++.+--.|.-||+|--..-+ .+....-..+.++..+-+--. +.+....|+- --
T Consensus 24 ~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf-----~v 98 (728)
T KOG4535|consen 24 IKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPF-----SV 98 (728)
T ss_pred HhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCch-----HH
Confidence 3345555555679999988433322 122222335555554432111 1111223321 11
Q ss_pred HHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhh---cccchHHHHHHhhc--CchhhHHHHHHHHHHH
Q psy13179 195 SMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYI---FETNLITTLIEKFL--NVPLFRNVTLKCLTEI 269 (352)
Q Consensus 195 ~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i---~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei 269 (352)
.+........+.+.-+|+....+..+..+++|+...++-.|...+ +-.+++.-+ ..+. .|+.++..++-.+-.|
T Consensus 99 ~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~i-k~~i~~~d~~v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 99 MIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQI-KPYIRHKDVNVRVSSLTLLGAI 177 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHhhcCCCChhhHHHHHHHHH
Confidence 123334556666667777777888999999999999888775432 222344443 3444 5789999999999888
Q ss_pred HhccC
Q psy13179 270 AAVSG 274 (352)
Q Consensus 270 ~~~~~ 274 (352)
++...
T Consensus 178 v~t~~ 182 (728)
T KOG4535|consen 178 VSTHA 182 (728)
T ss_pred HhcCC
Confidence 87654
No 88
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=32.21 E-value=79 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccC
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYS 68 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s 68 (352)
++..|.++.+.+|.++..-++.+++.++++.+.|+.-.++..+.+++
T Consensus 209 ~i~alr~ayk~lfr~~~~~~e~~~~i~~~~~~~~~v~~~~dFi~~s~ 255 (260)
T COG1043 209 EIHALRKAYKLLFRSGLTLREALEEIAEEYADNPEVKEFIDFIASSS 255 (260)
T ss_pred HHHHHHHHHHHHeeCCCCHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 56778888899999887778888899999999998888888877654
No 89
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=32.15 E-value=5.6e+02 Score=26.10 Aligned_cols=34 Identities=12% Similarity=0.418 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy13179 77 ALQILEQVIKTRWKALPREQCDGIKKYIVGLIIK 110 (352)
Q Consensus 77 al~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~ 110 (352)
+-.+++..++..|-..+++......+++.+++..
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa 104 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSA 104 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4566778888899888888888888888877754
No 90
>KOG0166|consensus
Probab=31.67 E-value=5.5e+02 Score=25.87 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCC-----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHP-----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p-----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
++..++.+++.+.+.+..|.+.+..+-... +....+...|.+..++.++|.|+=+|.+.-.- -++
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg----tse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG----TSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC----chh
Confidence 567777888877766555555444433322 23334445566677899999999999886652 233
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhH
Q psy13179 95 EQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKRE 139 (352)
Q Consensus 95 e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~ 139 (352)
..+..+..-.+-.+++... .++..+..+..-++.-|+...
T Consensus 144 ~T~~vv~agavp~fi~Ll~-----s~~~~v~eQavWALgNIagds 183 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLS-----SPSADVREQAVWALGNIAGDS 183 (514)
T ss_pred hccccccCCchHHHHHHhc-----CCcHHHHHHHHHHHhccccCC
Confidence 3344444333333333322 235567788888888888763
No 91
>KOG1086|consensus
Probab=30.87 E-value=4.3e+02 Score=25.98 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHhcCChH-h-HHHHHHHHHHHhcCCChHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhc
Q psy13179 22 DITLLDNIVECMYTGMGV-E-QKAAQEVLTALKEHPDAWTRVDTILEY---SSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~-~-r~~A~~~L~~fk~~p~~w~~~~~iL~~---s~~~~vrffal~~L~~~I~~~ 88 (352)
.++.||.=+.-+-+|.+. + -+...-+++++-++|++-.++..+|.. |....-...|+++|+.++++.
T Consensus 5 p~~sle~wlnrATdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmknc 76 (594)
T KOG1086|consen 5 PVESLEYWLNRATDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNC 76 (594)
T ss_pred CcccHHHHHHhccCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhh
Confidence 445677777777777543 3 445777889999999888888887753 444556677888888888764
No 92
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.85 E-value=1.1e+02 Score=24.14 Aligned_cols=106 Identities=11% Similarity=0.164 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcC----ChHhHHHHHH-HHHHHhc-CCChHH---HHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 24 TLLDNIVECMYTG----MGVEQKAAQE-VLTALKE-HPDAWT---RVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 24 ~~L~~~v~~~~~~----~~~~r~~A~~-~L~~fk~-~p~~w~---~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
..+|.-+..+.++ ++.-+ .++ |.++..+ ..+.|. .+..+|..+.++.+.-.|+.=|-..|+..=..-..
T Consensus 4 tsfdeY~~El~sg~L~WSP~H~--se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~i 81 (119)
T PF11698_consen 4 TSFDEYLSELESGHLEWSPVHK--SEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNI 81 (119)
T ss_dssp -HHHHHHHHHHHT-----GGGG---HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHH
T ss_pred CcHHHHHHHHhcCCccccCCCC--CccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHH
Confidence 4566666666654 22211 122 2223222 223444 45556777778888889999999999874322222
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHc
Q psy13179 95 EQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREW 140 (352)
Q Consensus 95 e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~ 140 (352)
-++.+.|..+++++.. +++.++-..-.++..++.+-|
T Consensus 82 i~~lg~K~~vM~Lm~h---------~d~eVr~eAL~avQklm~~~w 118 (119)
T PF11698_consen 82 IEKLGAKERVMELMNH---------EDPEVRYEALLAVQKLMVNNW 118 (119)
T ss_dssp HHHHSHHHHHHHHTS----------SSHHHHHHHHHHHHHHHHHS-
T ss_pred HHhcChHHHHHHHhcC---------CCHHHHHHHHHHHHHHHHhcC
Confidence 3566778888888854 356677666666766666544
No 93
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=30.05 E-value=2.3e+02 Score=21.06 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHH
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMI 131 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~ 131 (352)
++++.|..+-..++..... ||...+.+..++.+++..
T Consensus 67 ~~~~~r~~~l~~L~~vA~A---DG~~~~~E~~~l~~ia~~ 103 (104)
T cd07313 67 FDYEERLELVEALWEVAYA---DGELDEYEEHLIRRVADL 103 (104)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHhh
Confidence 3677777777777776653 444445566777777654
No 94
>KOG1248|consensus
Probab=28.59 E-value=8.6e+02 Score=27.14 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=114.9
Q ss_pred ChHhHHHHHHHHHHHhcCCChHHHHHHHhc----------cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q psy13179 37 MGVEQKAAQEVLTALKEHPDAWTRVDTILE----------YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVG 106 (352)
Q Consensus 37 ~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~----------~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~ 106 (352)
++..|+.|.++|.++-..|.+-....+.+. ++.+..+|.-.+.+|+..++ .++.+....+-..|-+
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~----~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK----LLSAEHCDLIPKLIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Confidence 445788999999999888665544444321 12345677777888888777 4566777777777777
Q ss_pred HHHHhcCCcchhhhhHHHHHHHHHHHHHHHH----hHcCCCc-chhHHHHHHhcccC---hhhhhHH--HHHHHhHHHHh
Q psy13179 107 LIIKTSSTPETLEREKMYLNKLNMILVQVLK----REWPKNW-QSFIPDIVGASKTN---ESLCQNN--MVILKLLSEEV 176 (352)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~----~~~P~~W-p~fi~~l~~~~~~~---~~~~~~~--l~iL~~L~eEv 176 (352)
.++.. . +.+..-+.-.-++|..|.. .+..++- +..+++.+..+..+ +.+...+ +.-+..+..|
T Consensus 743 vIL~~-K-----e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e- 815 (1176)
T KOG1248|consen 743 VILSL-K-----EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE- 815 (1176)
T ss_pred HHHhc-c-----cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH-
Confidence 77664 1 1222333222234444441 1222222 33444444433322 1111111 1111222111
Q ss_pred hccCCCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhccc--chHHHHHHhhc
Q psy13179 177 FDFSGGQLTQAKAKHLKDSMCLQ-FSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFET--NLITTLIEKFL 253 (352)
Q Consensus 177 ~~~~~~~l~~~r~~~lk~~l~~~-~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~--~ll~~l~~~~l 253 (352)
+ ++.+... .+.+++.+...|. +.+++++++|+..++.++.=+|...+-.. .+++.+ ..+.
T Consensus 816 --~-------------~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl-l~ls 878 (1176)
T KOG1248|consen 816 --F-------------KNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL-LALS 878 (1176)
T ss_pred --H-------------hccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH-HHHH
Confidence 1 1112222 3455665555554 36789999999999999999987765443 477776 4555
Q ss_pred Cc-hhhHHHHHHHHHHHHhccCCc
Q psy13179 254 NV-PLFRNVTLKCLTEIAAVSGTY 276 (352)
Q Consensus 254 ~~-~~~~~~al~cL~ei~~~~~~~ 276 (352)
.+ .......+.-|.+.+-++.++
T Consensus 879 ~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 879 HDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhCH
Confidence 44 233345556666666666553
No 95
>KOG3682|consensus
Probab=28.54 E-value=7.1e+02 Score=26.12 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHhccccCcchhhccc-chHHHHHHhhcCchhhHHHHHHHHHHHHhccCC
Q psy13179 216 NASLVGATLETLLRFLNWIPLGYIFET-NLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 216 ~~~l~~~~L~~l~~~l~Wi~~~~i~~~-~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~ 275 (352)
.+.+...+.+.+.+|-.. ..++.. .|++++ .+.+-+..+...+.|+.++.+|...
T Consensus 521 ~a~Lq~II~k~l~Hf~d~---~~i~~~n~Fi~il--Dl~~~~~~~tsvc~~il~~f~k~~~ 576 (930)
T KOG3682|consen 521 TALLQNIIAKFLEHFSDC---LDIVTSNSFIKIL--DLIGYDIQSTSVCSRILEIFSKTFT 576 (930)
T ss_pred hHHHHHHHHHHHHHHhhH---HHHhhHhhHHHHH--HHhcccchhHHHHHHHHHHHHhcCC
Confidence 345666666666665322 223332 255543 2335567788999999999998763
No 96
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=28.34 E-value=1.9e+02 Score=26.51 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=62.3
Q ss_pred CCcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHh----cCCC
Q psy13179 142 KNWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLD----NSSN 216 (352)
Q Consensus 142 ~~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~----~~~~ 216 (352)
+.||-+++-++..+... ......|+.+|..+.+.+.... -..-|+..+-+.+. +.++..+.. |- ....
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~---~~~L~~tGl~~v~~---~al~~~L~~-LP~~tp~~~s 187 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE---WDILRRTGLFSVFE---DALFPCLYY-LPPITPEDES 187 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh---hHHHHHcChHHHHH---HHHHHHhhc-CCCCCCchhh
Confidence 58999999999998653 3556678999988876533211 00012222222221 112222211 11 1134
Q ss_pred hHHHHHHHHHHHhcccc--CcchhhcccchHHH----HHHhhc---C--chhhHHHHHHHHHHHHhc
Q psy13179 217 ASLVGATLETLLRFLNW--IPLGYIFETNLITT----LIEKFL---N--VPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 217 ~~l~~~~L~~l~~~l~W--i~~~~i~~~~ll~~----l~~~~l---~--~~~~~~~al~cL~ei~~~ 272 (352)
..+...+..|+.+.+.- .+-+.-....+... ++..+. + .+.++...++.+..++..
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~ 254 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDE 254 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHH
Confidence 56777777777775331 11111111111121 111211 2 477888888888887765
No 97
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=28.16 E-value=1.8e+02 Score=21.65 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcc-hhHHHHH
Q psy13179 90 KALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQ-SFIPDIV 152 (352)
Q Consensus 90 ~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp-~fi~~l~ 152 (352)
.-+++|+|+.|+...- .+...+.....+..+.+--|+..|- .|++-+-
T Consensus 29 ~~L~~e~ke~I~a~~~---------------~~Gn~~AA~~LL~~l~~~~~~~GWf~~FldAL~ 77 (88)
T cd08818 29 TFLEAEVKERIRAAAA---------------TRGNIAAAELLLSTLEKGTWDPGWFREFVTALE 77 (88)
T ss_pred ccCCHHHHHHHHHHHH---------------ccCcHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 3589999998887542 1223334445555555557888885 4444443
No 98
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=28.07 E-value=3.1e+02 Score=21.85 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=43.3
Q ss_pred HHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 27 DNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 27 ~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
+..|+.+.++. .+.-...-++++....++++-..+...|. .+.++.+...|+.+|+..+++.
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc 68 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC 68 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 34455555542 22455677788888887766666666543 2678999999999999999974
No 99
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=27.99 E-value=1.2e+02 Score=19.62 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccccCcc-hhhcccchHHHHHHhhc--CchhhHHHHHHHHHHH
Q psy13179 218 SLVGATLETLLRFLNWIPL-GYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEI 269 (352)
Q Consensus 218 ~l~~~~L~~l~~~l~Wi~~-~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei 269 (352)
.+...++.+++....-.+- ..-+.+++++.+ ...+ +++.+|..|+.+|..|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L-~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPAL-IPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHH-HHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHhcC
Confidence 3455666666653222111 111234566666 4555 4568899999988653
No 100
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=27.68 E-value=3.8e+02 Score=22.73 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhH--cCC-CcchhHHHHHHhcccChhhhhHHHHHHHhHH
Q psy13179 99 GIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKRE--WPK-NWQSFIPDIVGASKTNESLCQNNMVILKLLS 173 (352)
Q Consensus 99 ~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~--~P~-~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~ 173 (352)
+||.-++..+.... ....-..+++.+++.++..- .|+ .|+++-+-+.+...+.+ +-++.|+..|+
T Consensus 3 eikplLIsCL~~q~-------~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~---~kA~~IF~~L~ 70 (174)
T PF04510_consen 3 EIKPLLISCLTMQE-------TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEP---VKAFHIFICLP 70 (174)
T ss_pred chHHHHHHHHHhhc-------ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccch---HHHHHHHHhCC
Confidence 46777777777632 12233456666666666554 344 79998877777664332 44566666655
No 101
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.98 E-value=1.1e+03 Score=27.94 Aligned_cols=109 Identities=11% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhH
Q psy13179 60 RVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKRE 139 (352)
Q Consensus 60 ~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~ 139 (352)
-...++.++.+.++|-..+..+.+.|..+-..+-..- ..+++.+..... ...+.++.+.=+++..|....
T Consensus 1186 Pfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGW-----ktIF~VLs~aa~-----d~~e~iV~lAFetl~~I~~d~ 1255 (1780)
T PLN03076 1186 PFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGW-----KSMFMVFTTAAY-----DDHKNIVLLAFEIIEKIIREY 1255 (1780)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCc-----HHHHHHHHHHHh-----CccHHHHHHHHHHHHHHHHhh
Confidence 3334456667778888888888866654322221111 124444443222 235666666666666666654
Q ss_pred cC---CCcchhHHHHHHhcc----c--ChhhhhHHHHHHHhHHHHhhc
Q psy13179 140 WP---KNWQSFIPDIVGASK----T--NESLCQNNMVILKLLSEEVFD 178 (352)
Q Consensus 140 ~P---~~Wp~fi~~l~~~~~----~--~~~~~~~~l~iL~~L~eEv~~ 178 (352)
++ ..=++.|.|++..+. . +...+..++..|+.+...+.+
T Consensus 1256 f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1256 FPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred hhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 44 211356667665552 1 234555667777776666543
No 102
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=26.89 E-value=5e+02 Score=23.80 Aligned_cols=243 Identities=11% Similarity=0.066 Sum_probs=127.8
Q ss_pred HHHHHHH-HHHhcCChHhHHHHHHHHHHHhc-----CCChHHHHHHHhccCCchHHHHHHHHHHHHHHhh-ccCCCCHHH
Q psy13179 24 TLLDNIV-ECMYTGMGVEQKAAQEVLTALKE-----HPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT-RWKALPREQ 96 (352)
Q Consensus 24 ~~L~~~v-~~~~~~~~~~r~~A~~~L~~fk~-----~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~-~W~~l~~e~ 96 (352)
+.++.+| -+.-++++..|..|-+-|--+-- ..+........++. .+..+|--|++++-+.+.. ....++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 3455555 34445567788888876654321 22344455555643 4889999999999997654 333333333
Q ss_pred -------HHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChh-hhhHHHHH
Q psy13179 97 -------CDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNES-LCQNNMVI 168 (352)
Q Consensus 97 -------k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~-~~~~~l~i 168 (352)
...+-+.+.+++.. .++.+....++-++.++..+--..||+.+..++-..-+... .....-.+
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~---------~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDS---------ENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccCccchHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 24555556666543 24457788899999998887555579999998766633211 10111234
Q ss_pred HHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHH
Q psy13179 169 LKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTL 248 (352)
Q Consensus 169 L~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l 248 (352)
|..... ++.++. ..+ +..|.+.+...+..+...-....++.-....-++...++.|.+........-..
T Consensus 176 L~~Ffp-~y~~s~----~~~----Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~-- 244 (298)
T PF12719_consen 176 LSVFFP-VYASSS----PEN----QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQE-- 244 (298)
T ss_pred HHHHHH-HHHcCC----HHH----HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccc--
Confidence 444333 222211 111 233555543444433332221112222223446667778888765543321111
Q ss_pred HHhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Q psy13179 249 IEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQL 294 (352)
Q Consensus 249 ~~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l 294 (352)
.-..+..-..|.+.+.++.+-... + ....+.+.+.++.+
T Consensus 245 ---~~~~~~h~~La~~il~~i~~~~~~-~---~~~~k~~~~~L~~L 283 (298)
T PF12719_consen 245 ---IQNESVHVDLAIDILNEILSDPEK-E---KEERKALCKALSKL 283 (298)
T ss_pred ---cccccHHHHHHHHHHHHHHhcccc-c---hHHHHHHHHHHhcc
Confidence 112233446678888888643221 1 12335566666655
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=26.31 E-value=4.9e+02 Score=23.50 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHhcCC---------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccC
Q psy13179 21 LDITLLDNIVECMYTG-MGVEQKAAQEVLTALKEHP---------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWK 90 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~-~~~~r~~A~~~L~~fk~~p---------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~ 90 (352)
++.+.++.++..+-.. ++..++.|.-.+-..-..| ++-.....+|. ++++.+|--|+.+|.+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nl------ 81 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNL------ 81 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhc------
Confidence 5778888888776654 4555666665555544333 33444444454 46788898888888863
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHH-hHcCCCcchhHHHHHHhcccCh-hhhhHHHHH
Q psy13179 91 ALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLK-REWPKNWQSFIPDIVGASKTNE-SLCQNNMVI 168 (352)
Q Consensus 91 ~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~-~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~i 168 (352)
..+.+.+..||.++-..+.....++ -+..+...--.+|..+.. .++-.--.+.+++++.++.++. .....++++
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~----lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~ 157 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSP----LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKV 157 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHH
Confidence 3466778888887766665432221 111121111123333321 2222222345677777776543 333456666
Q ss_pred HHhHHH
Q psy13179 169 LKLLSE 174 (352)
Q Consensus 169 L~~L~e 174 (352)
|..|++
T Consensus 158 L~nLS~ 163 (254)
T PF04826_consen 158 LVNLSE 163 (254)
T ss_pred HHHhcc
Confidence 666654
No 104
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=26.25 E-value=51 Score=25.32 Aligned_cols=54 Identities=7% Similarity=0.371 Sum_probs=39.0
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHH-HHHHHHHHHHHHhHcCCCcc
Q psy13179 82 EQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYL-NKLNMILVQVLKREWPKNWQ 145 (352)
Q Consensus 82 ~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~-~kl~~~l~~I~~~~~P~~Wp 145 (352)
++.+.++|+..+.+.-....+.+...+.+ ....+ .++..++-.|..++|-..+.
T Consensus 2 DHfLA~~W~~~s~~~L~~f~~~~Y~~L~~----------~~~~lP~~~~~~~~~m~~~dWL~~Y~ 56 (106)
T PF04336_consen 2 DHFLAKHWSQFSDQPLEDFAQRFYQQLEA----------NQPILPPRFQRMLPYMIEHDWLSSYR 56 (106)
T ss_pred chHHHHhHHHHCcCCHHHHHHHHHHHHHh----------ccccCCHHHHHHHHHHHHhCHHHHcC
Confidence 35678899998888766666666666653 33455 78888888999988876554
No 105
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=26.14 E-value=7.7e+02 Score=25.80 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccchHHHHHHhhc---CchhhHHHHHHHHHHHHhccCC
Q psy13179 201 SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETNLITTLIEKFL---NVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 201 ~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ll~~l~~~~l---~~~~~~~~al~cL~ei~~~~~~ 275 (352)
..++..+...+ ..+.-...+|..+.+++.--| +-.|.+++++..| .+++ .+..+-..|+-||+-++ ++-
T Consensus 69 K~~~~~l~~~~---~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~L-Lk~L~~D~~~~~~~~al~~LimlL--P~i 142 (668)
T PF04388_consen 69 KHLFDKLNDYF---VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSL-LKCLQFDTSITVVSSALLVLIMLL--PHI 142 (668)
T ss_pred HHHHHHHHHHH---cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHH-HHHHhhcccHHHHHHHHHHHHHHh--ccc
Q ss_pred ccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcCCC--ccHHHhhhh
Q psy13179 276 YSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKS--TPEEMLKHY 350 (352)
Q Consensus 276 ~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~~~~~~~le~~~--~~~~~~~~~ 350 (352)
|......+..+|......+. |.. ...+..++.|+-.+..-+..++..-.++. | +.++||.||
T Consensus 143 p~~l~~~L~~Lf~If~Rl~~--------W~~--~~~~~~~~~~~~~l~~~~~~lFt~LYGly---P~NF~~flr~~y 206 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLLS--------WER--KNPGSVPEVYLIHLQASVYALFTRLYGLY---PCNFLSFLRQHY 206 (668)
T ss_pred cchhhHHHHHHHHHHHHHHH--------ccc--CCCCCccccccccchhhHHHHHHHHHhcc---cchHHHHHHHHH
No 106
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=25.70 E-value=3.8e+02 Score=22.04 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccC-CchHHHHHHHHHHHH
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQ 83 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s-~~~~vrffal~~L~~ 83 (352)
..+..++..+--.+.++..++.+.|... .|-.-..+..+|... .++.||.||...|+.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W--~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~ 97 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW--APLSPEDALELLSPKYPDPVVRQYAVRVLES 97 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC--CCCCHHHHHHHcCCcCCCHHHHHHHHHHHHh
Confidence 4444444443333444555666666554 333445555665432 356666666666554
No 107
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.29 E-value=4.8e+02 Score=23.05 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhcCC-ChHHHHHHHh---ccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCc
Q psy13179 40 EQKAAQEVLTALKEHP-DAWTRVDTIL---EYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTP 115 (352)
Q Consensus 40 ~r~~A~~~L~~fk~~p-~~w~~~~~iL---~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~ 115 (352)
.+...-+.|-.+-.+. ..-..+.+.+ ........++++...+-...+.+... ...++..+.....+.....
T Consensus 17 ~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-----f~~L~~~L~~~~~r~~~~~ 91 (234)
T PF12530_consen 17 LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-----FPFLQPLLLLLILRIPSSF 91 (234)
T ss_pred HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-----HHHHHHHHHHHHhhccccc
Confidence 4445555565555555 5555666654 33445566778877777765543322 2566666666555422111
Q ss_pred chhhhhHHHH--HHHHHHHHHHHHhHcCCCcchhHHHHHHhc-ccC-hhhhhHHHHHHHhHHH
Q psy13179 116 ETLEREKMYL--NKLNMILVQVLKREWPKNWQSFIPDIVGAS-KTN-ESLCQNNMVILKLLSE 174 (352)
Q Consensus 116 ~~~~~~~~~~--~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~-~~~-~~~~~~~l~iL~~L~e 174 (352)
. +.+..+. -.++..+..|.+. -|+.|++++.-+.+.+ ..+ +...-.++..+..|++
T Consensus 92 ~--~~~~~~~~~i~~a~s~~~ic~~-~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 92 S--SKDEFWECLISIAASIRDICCS-RPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred C--CCcchHHHHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 1 1122222 2333455555554 5889999999999888 443 3444567788877764
No 108
>KOG2274|consensus
Probab=25.08 E-value=6.4e+02 Score=27.31 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc-----hhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhccCC
Q psy13179 201 SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL-----GYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 201 ~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~-----~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~ 275 (352)
|.|++.+.++... .+.++.....+++...++.=|- +...-|.++.+ |.++-++|.+...+-+|+-+++....
T Consensus 529 p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l-F~k~s~DP~V~~~~qd~f~el~q~~~- 605 (1005)
T KOG2274|consen 529 PMILDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL-FLKYSEDPQVASLAQDLFEELLQIAA- 605 (1005)
T ss_pred hHHHHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHH-
Confidence 4444444444332 2345555666666665554332 11122234444 46777999999999999999987542
Q ss_pred ccchHHHHHHHHHHHHHHH
Q psy13179 276 YSNYENVYVALFTTTMAQL 294 (352)
Q Consensus 276 ~~~~~~~~~~~f~~~l~~l 294 (352)
+|...-..+.+.+++-+
T Consensus 606 --~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 606 --NYGPMQERLIPSLISVL 622 (1005)
T ss_pred --hhcchHHHHHHHHHHHH
Confidence 34433334555554433
No 109
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=24.99 E-value=4.9e+02 Score=25.73 Aligned_cols=138 Identities=11% Similarity=0.115 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc-hhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhccCCccch
Q psy13179 201 SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL-GYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNY 279 (352)
Q Consensus 201 ~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~-~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~~~~~ 279 (352)
+.|......++.....++....+++.+...+..-+. .......+...+ ... ..++-...-++.|..+-..|.+...+
T Consensus 27 ~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I-~~~-~~~~d~~~~l~aL~~LT~~Grdi~~~ 104 (464)
T PF11864_consen 27 EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI-SDP-SNDDDFDLRLEALIALTDNGRDIDFF 104 (464)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH-hcC-CCchhHHHHHHHHHHHHcCCcCchhc
Confidence 344444445555555667888899988888776543 222222233332 111 22333456666666666666654444
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHH------hccC-CcchHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy13179 280 ENVYVALFTTTMAQLQMMFPMDINIKQA------YAMG-KDTEQNFIQNLAMFLCTFLKEHGSLIEKK 340 (352)
Q Consensus 280 ~~~~~~~f~~~l~~l~~~~p~~~~~~~~------~~~~-~~~~~~f~~~l~~~l~~f~~~~~~~le~~ 340 (352)
+..+..+...-+..+.+........... .+.. .+.+...+..+-.|++..++...+.++..
T Consensus 105 ~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~ 172 (464)
T PF11864_consen 105 EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDED 172 (464)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHH
Confidence 4433333333332222111110000000 0000 01244455678888888888877777654
No 110
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=24.95 E-value=4.2e+02 Score=22.34 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q psy13179 98 DGIKKYIVGLIIK 110 (352)
Q Consensus 98 ~~ik~~ll~~l~~ 110 (352)
..+|++.++.+.+
T Consensus 85 ~~VR~yAV~~L~~ 97 (171)
T cd00872 85 EHVREFAVRCLEK 97 (171)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555555554
No 111
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=24.70 E-value=1.1e+02 Score=19.82 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHh
Q psy13179 96 QCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKR 138 (352)
Q Consensus 96 ~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~ 138 (352)
+.+++|+-+++++... +.. +.++..+++.+.+.
T Consensus 3 n~eYLKNVll~fl~~~---------e~~-r~~ll~vi~tlL~f 35 (46)
T smart00755 3 NFEYLKNVLLQFLTLR---------ESE-RETLLKVISTVLQL 35 (46)
T ss_pred cHHHHHHHHHHHhccC---------cch-HHHHHHHHHHHhCC
Confidence 4688999999999753 122 56777777777764
No 112
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=24.69 E-value=44 Score=27.73 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=17.5
Q ss_pred HHHHHHhhhhhcCC-----CccHHHhhhhcC
Q psy13179 327 CTFLKEHGSLIEKK-----STPEEMLKHYNE 352 (352)
Q Consensus 327 ~~f~~~~~~~le~~-----~~~~~~~~~~~~ 352 (352)
.+|++.-+++|++. +....|++||||
T Consensus 96 k~~~e~alkrL~~inpdlksSP~amLqhYne 126 (171)
T PF05674_consen 96 KSFIETALKRLDKINPDLKSSPRAMLQHYNE 126 (171)
T ss_pred HHHHHHHHHHHhcCCCccccCHHHHHHHHHH
Confidence 45566666777753 244689999986
No 113
>KOG0168|consensus
Probab=24.27 E-value=2e+02 Score=30.74 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=53.5
Q ss_pred HHHHHHHH--HHHhH-HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcc----cchHHHHHHhhc--Cchhh
Q psy13179 188 KAKHLKDS--MCLQF-SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFE----TNLITTLIEKFL--NVPLF 258 (352)
Q Consensus 188 r~~~lk~~--l~~~~-~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~----~~ll~~l~~~~l--~~~~~ 258 (352)
|..-+++. +.+.| ..++..+++|...+.++.+...||.++.+.+.+...+.|.+ ++.=..+ ...+ .++.+
T Consensus 538 r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~l-AG~lsskD~~v 616 (1051)
T KOG0168|consen 538 REGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHL-AGMLSSKDLTV 616 (1051)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHH-HhhhhcCCCee
Confidence 34444442 34444 77889999999988899999999999999888877654432 2222221 2333 45666
Q ss_pred HHHHHHHHHHHHhcc
Q psy13179 259 RNVTLKCLTEIAAVS 273 (352)
Q Consensus 259 ~~~al~cL~ei~~~~ 273 (352)
-..|+... ||+-++
T Consensus 617 lVgALQvA-EiLmeK 630 (1051)
T KOG0168|consen 617 LVGALQVA-EILMEK 630 (1051)
T ss_pred EeehHHHH-HHHHHH
Confidence 66777665 555433
No 114
>KOG0946|consensus
Probab=23.89 E-value=9.2e+02 Score=25.86 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=59.2
Q ss_pred chhhHHHhhcc--cccCCHHHHHHHHHHHhc----CC------hHh-H-HHHHHHHHHHhcCCChHHHHHHHhccCCchH
Q psy13179 7 PNEQFKKLLDF--NQKLDITLLDNIVECMYT----GM------GVE-Q-KAAQEVLTALKEHPDAWTRVDTILEYSSNQQ 72 (352)
Q Consensus 7 ~~~~~~~~l~~--~~~~di~~L~~~v~~~~~----~~------~~~-r-~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~ 72 (352)
|+|.|..+++. .+-+|.+.+.-+++.++. .+ ++. - .-...+=+.|-++++-...+...++ ..+-+
T Consensus 59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e-~~DF~ 137 (970)
T KOG0946|consen 59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-EFDFH 137 (970)
T ss_pred HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-hhchh
Confidence 67788888876 356888888888877653 21 111 1 1244455678889999999888886 36889
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13179 73 TKFYALQILEQVIKTR 88 (352)
Q Consensus 73 vrffal~~L~~~I~~~ 88 (352)
||.+|.++|...++.+
T Consensus 138 VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 138 VRLYAIQLLSALLSCR 153 (970)
T ss_pred hhhHHHHHHHHHHhcC
Confidence 9999999999999865
No 115
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=23.53 E-value=3.4e+02 Score=20.74 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=40.5
Q ss_pred HHHHHHHhHHHHhhccCCCcccHHHHHHHH----------HHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcccc
Q psy13179 164 NNMVILKLLSEEVFDFSGGQLTQAKAKHLK----------DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNW 233 (352)
Q Consensus 164 ~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk----------~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~W 233 (352)
..|-++..+.+.+.+.....-...|++.++ ..+....|+|...+...+ ..+++...+++|...|+.-
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal---~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSAL---EIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHH
Confidence 456677777777766322211223322222 222233455555555444 3458888999999988877
Q ss_pred Ccchh
Q psy13179 234 IPLGY 238 (352)
Q Consensus 234 i~~~~ 238 (352)
++.+.
T Consensus 85 L~~~~ 89 (107)
T PF08064_consen 85 LDEED 89 (107)
T ss_pred CCHHH
Confidence 76544
No 116
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=23.44 E-value=1.3e+03 Score=27.45 Aligned_cols=113 Identities=15% Similarity=0.245 Sum_probs=63.1
Q ss_pred ChHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhcc--CCCCH--HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHH
Q psy13179 56 DAWTRVDTILEY---SSNQQTKFYALQILEQVIKTRW--KALPR--EQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKL 128 (352)
Q Consensus 56 ~~w~~~~~iL~~---s~~~~vrffal~~L~~~I~~~W--~~l~~--e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl 128 (352)
..|.++...+.. +.+..+++||+..|+..-.+-- ..++. -+++.+|-+. .+.... ....++..+
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe--~im~~s-------~~~eVrE~I 1203 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV--IVMRKS-------NAVEIRELI 1203 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH--HHHHhc-------CchHHHHHH
Confidence 345555554322 2367899999999888544322 12211 1345554433 222221 233455666
Q ss_pred HHHHHHHHHhHc---CCCcchhHHHHHHhccc-ChhhhhHHHHHHHhHHHHhh
Q psy13179 129 NMILVQVLKREW---PKNWQSFIPDIVGASKT-NESLCQNNMVILKLLSEEVF 177 (352)
Q Consensus 129 ~~~l~~I~~~~~---P~~Wp~fi~~l~~~~~~-~~~~~~~~l~iL~~L~eEv~ 177 (352)
..++..|+..-. -..|++.|.=+-..... .+.....++..++.+..|-+
T Consensus 1204 LeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f 1256 (1780)
T PLN03076 1204 IRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF 1256 (1780)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh
Confidence 666666665432 24899988776655443 34566677888887776644
No 117
>KOG4368|consensus
Probab=23.34 E-value=1.4e+02 Score=30.17 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.2
Q ss_pred hhhHHHhhcccccCCHHHHHHHHHHHhcC-ChHhHHHHHHHHHHHhcCCChHHHHHHHh
Q psy13179 8 NEQFKKLLDFNQKLDITLLDNIVECMYTG-MGVEQKAAQEVLTALKEHPDAWTRVDTIL 65 (352)
Q Consensus 8 ~~~~~~~l~~~~~~di~~L~~~v~~~~~~-~~~~r~~A~~~L~~fk~~p~~w~~~~~iL 65 (352)
+|.|+++|.. ..+|++.|+..++.+-+. +.+...+|-+|.-+.-++|.-..+....|
T Consensus 89 ~~~~~k~l~~-~~l~~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l 146 (757)
T KOG4368|consen 89 EQQMQKLLEE-TQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHL 146 (757)
T ss_pred HHHHHHHHHh-ccCCHHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHH
Confidence 5778998874 457999999999887764 44456677777776666665555444443
No 118
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=23.34 E-value=4.1e+02 Score=21.56 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 26 LDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 26 L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
++..|+.+-++. .+.-....++++.+..++.+-.-+...|. .+.++.++.+|+.+|+..+++.
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNC 72 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNC 72 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHC
Confidence 455555554442 22344556677777666655555554442 2478999999999999999864
No 119
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.64 E-value=4.2e+02 Score=23.07 Aligned_cols=67 Identities=22% Similarity=0.207 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhcC----CChHHHHHHHhcc--CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy13179 40 EQKAAQEVLTALKEH----PDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIK 110 (352)
Q Consensus 40 ~r~~A~~~L~~fk~~----p~~w~~~~~iL~~--s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~ 110 (352)
.+..|.+.|..+|.+ ...-+...++... .+....++.|..+|- +.|...++++++.+-...-+++.+
T Consensus 33 v~~~a~~~ls~lk~~~~~~k~dp~~l~~~v~~~l~p~vd~~~~a~~vLG----k~~k~aspeQ~~~F~~aF~~yl~q 105 (202)
T COG2854 33 VQEAADKVLSILKNNQAKIKQDPQYLRQIVDQELLPYVDFKYAAKLVLG----KYYKTASPEQRQAFFKAFRTYLEQ 105 (202)
T ss_pred HHHHHHHHHHHHhccchhhccCHHHHHHHHHHHhhhhhcHHHHHHHHhc----cccccCCHHHHHHHHHHHHHHHHH
Confidence 477788888888876 3344444444433 234455666655554 788999999998877666666654
No 120
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.50 E-value=1.2e+02 Score=19.30 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.3
Q ss_pred cCChHhHHHHHHHHHH
Q psy13179 35 TGMGVEQKAAQEVLTA 50 (352)
Q Consensus 35 ~~~~~~r~~A~~~L~~ 50 (352)
.++.++|.+|++.|.+
T Consensus 28 ~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 28 EGDEAQRQEARALLAQ 43 (44)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 4677788899988865
No 121
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.37 E-value=3.6e+02 Score=22.39 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHH
Q psy13179 88 RWKALPREQCDGIKKYIVGLIIK 110 (352)
Q Consensus 88 ~W~~l~~e~k~~ik~~ll~~l~~ 110 (352)
.-..|++++|+.+++.+=+++..
T Consensus 94 e~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 94 EDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HhhcCCHHHHHHHHhhhHHHhhc
Confidence 45689999999999999998875
No 122
>KOG1967|consensus
Probab=21.63 E-value=2.3e+02 Score=30.54 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHhccC
Q psy13179 256 PLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 256 ~~~~~~al~cL~ei~~~~~ 274 (352)
-.+|..|++||..+..+-+
T Consensus 967 ~~VR~~ALqcL~aL~~~~P 985 (1030)
T KOG1967|consen 967 MVVREDALQCLNALTRRLP 985 (1030)
T ss_pred hHHHHHHHHHHHHHhccCC
Confidence 4689999999999887443
No 123
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=21.61 E-value=7.4e+02 Score=23.94 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHH-h-------ccCCchHHHHHHHHHHHHHHhhccCCC-CHHHHHH----HHHHHHHH
Q psy13179 41 QKAAQEVLTALKEHPDAWTRVDTI-L-------EYSSNQQTKFYALQILEQVIKTRWKAL-PREQCDG----IKKYIVGL 107 (352)
Q Consensus 41 r~~A~~~L~~fk~~p~~w~~~~~i-L-------~~s~~~~vrffal~~L~~~I~~~W~~l-~~e~k~~----ik~~ll~~ 107 (352)
.+..-+.|.++-.+++-|.....- + ..+.+...-+..+.+|...+.+++... ..+.-.. +-..++++
T Consensus 19 ~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~ 98 (415)
T PF12460_consen 19 YERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFEL 98 (415)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHH
Confidence 444555555666666655533332 1 122255666778899999999888766 2222222 33444555
Q ss_pred HHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcc
Q psy13179 108 IIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASK 156 (352)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~ 156 (352)
..+...... ..+..++..++.++..|++.-=++.=..++.++...+.
T Consensus 99 ~~~~~~~~~--~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~ 145 (415)
T PF12460_consen 99 ALQASDQSS--DLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFL 145 (415)
T ss_pred HHhhccccc--ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 544322211 12356778888888888887655555566666665543
No 124
>KOG1059|consensus
Probab=21.41 E-value=9.9e+02 Score=25.33 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHH----HH
Q psy13179 120 REKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK----DS 195 (352)
Q Consensus 120 ~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk----~~ 195 (352)
.++.+++....++-+++++. |+++-.+-|.+..++.++.+.. ...++++...- -..+.++-.+.+- +.
T Consensus 193 pDp~V~SAAV~VICELArKn-PknyL~LAP~ffkllttSsNNW-mLIKiiKLF~a------LtplEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELARKN-PQNYLQLAPLFYKLLVTSSNNW-VLIKLLKLFAA------LTPLEPRLGKKLIEPITEL 264 (877)
T ss_pred CCchHHHHHHHHHHHHHhhC-CcccccccHHHHHHHhccCCCe-ehHHHHHHHhh------ccccCchhhhhhhhHHHHH
Confidence 46788888888999999986 8888777777776665432111 12233333211 1112232222222 23
Q ss_pred HHHh--HHHHHHHHHHHHhc-----C-CChHHHHHHHHHHHhccccCcch----------hhcc--cc----hHHHHHHh
Q psy13179 196 MCLQ--FSQIFTLCQFVLDN-----S-SNASLVGATLETLLRFLNWIPLG----------YIFE--TN----LITTLIEK 251 (352)
Q Consensus 196 l~~~--~~~i~~l~~~iL~~-----~-~~~~l~~~~L~~l~~~l~Wi~~~----------~i~~--~~----ll~~l~~~ 251 (352)
|++. +.-+++.+..+... . ++...+..|..=++.|+.=-|-+ -|.. +. .-+++ .+
T Consensus 265 i~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlI-lr 343 (877)
T KOG1059|consen 265 MESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLI-LR 343 (877)
T ss_pred HHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHH-HH
Confidence 3322 12233333222221 1 33445555555555544332211 1111 11 22333 34
Q ss_pred hc--CchhhHHHHHHHHHHHHhcc
Q psy13179 252 FL--NVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 252 ~l--~~~~~~~~al~cL~ei~~~~ 273 (352)
++ .|+++|..|++-|..+++++
T Consensus 344 cL~DkD~SIRlrALdLl~gmVskk 367 (877)
T KOG1059|consen 344 CLDDKDESIRLRALDLLYGMVSKK 367 (877)
T ss_pred HhccCCchhHHHHHHHHHHHhhhh
Confidence 55 46899999999999999874
No 125
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.77 E-value=5.1e+02 Score=21.71 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q psy13179 99 GIKKYIVGLIIK 110 (352)
Q Consensus 99 ~ik~~ll~~l~~ 110 (352)
.+|++.++.+.+
T Consensus 93 ~VR~yAV~~L~~ 104 (166)
T cd00870 93 VVRKYAVSRLKL 104 (166)
T ss_pred HHHHHHHHHHHh
Confidence 455555555554
Done!