Query psy13179
Match_columns 352
No_of_seqs 230 out of 1233
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:09:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 5.5E-57 1.9E-61 475.5 31.7 330 10-341 14-343 (1073)
2 4hat_C Exportin-1; heat repeat 100.0 8.8E-54 3E-58 452.5 38.2 337 10-346 2-342 (1023)
3 3m1i_C Exportin-1; heat repeat 100.0 1.7E-45 6E-50 393.5 37.8 331 10-340 2-335 (1049)
4 3ibv_A Exportin-T; karyopherin 100.0 1E-38 3.5E-43 337.1 31.1 298 20-341 2-315 (980)
5 3a6p_A Exportin-5; exportin-5, 100.0 1.4E-36 4.8E-41 327.6 27.2 303 23-339 10-339 (1204)
6 2x19_B Importin-13; nuclear tr 100.0 4.1E-34 1.4E-38 303.0 32.1 294 21-338 21-324 (963)
7 2x1g_F Cadmus; transport prote 100.0 5.6E-35 1.9E-39 310.0 25.0 294 21-338 4-332 (971)
8 1wa5_C Importin alpha RE-expor 99.9 1E-19 3.4E-24 192.9 31.7 236 22-273 3-277 (960)
9 2bpt_A Importin beta-1 subunit 99.8 1.2E-18 4.1E-23 181.5 24.2 231 21-274 1-256 (861)
10 4fdd_A Transportin-1; heat rep 99.8 6.8E-19 2.3E-23 184.1 17.2 230 22-273 11-246 (852)
11 1ibr_B P95, importin beta-1 su 99.8 4.2E-18 1.4E-22 164.7 19.9 223 26-274 3-249 (462)
12 1qgr_A Protein (importin beta 99.7 4.5E-15 1.5E-19 154.8 23.8 223 26-274 3-249 (876)
13 1u6g_C TIP120 protein, CAND1; 98.2 3.8E-05 1.3E-09 83.2 17.8 216 24-272 6-244 (1230)
14 4hxt_A De novo protein OR329; 96.7 0.23 8E-06 42.4 19.7 221 26-275 4-245 (252)
15 2vgl_B AP-2 complex subunit be 96.2 0.41 1.4E-05 47.4 20.1 231 26-274 51-314 (591)
16 1b3u_A Protein (protein phosph 95.7 0.92 3.1E-05 43.9 19.8 205 35-273 98-312 (588)
17 1ibr_B P95, importin beta-1 su 95.7 1 3.4E-05 42.1 19.4 233 24-271 128-395 (462)
18 1b3u_A Protein (protein phosph 95.7 0.18 6E-06 49.1 14.4 68 202-272 203-272 (588)
19 2jdq_A Importin alpha-1 subuni 95.6 0.83 2.8E-05 42.7 18.4 219 26-272 22-264 (450)
20 1u6g_C TIP120 protein, CAND1; 95.6 0.28 9.7E-06 52.8 16.7 186 68-273 17-206 (1230)
21 4b8j_A Importin subunit alpha- 95.6 1.5 5E-05 42.3 20.4 220 23-271 73-315 (528)
22 1oyz_A Hypothetical protein YI 95.5 1.1 3.8E-05 39.1 20.7 216 26-270 25-249 (280)
23 4db8_A Armadillo-repeat protei 95.2 1.1 3.7E-05 38.3 16.5 218 25-270 13-250 (252)
24 2vgl_B AP-2 complex subunit be 94.9 1.3 4.4E-05 43.7 17.9 212 36-274 251-496 (591)
25 2qk2_A LP04448P; mini spindles 94.7 1.8 6.2E-05 37.0 16.6 172 68-272 26-206 (242)
26 2jdq_A Importin alpha-1 subuni 94.6 2.8 9.6E-05 38.9 21.4 219 25-271 65-305 (450)
27 4fdd_A Transportin-1; heat rep 94.3 0.93 3.2E-05 46.7 15.9 176 35-232 101-285 (852)
28 1wa5_B Importin alpha subunit; 94.1 2.4 8.1E-05 40.9 17.5 221 25-272 88-329 (530)
29 2bpt_A Importin beta-1 subunit 94.0 6 0.00021 40.2 23.0 222 33-272 233-483 (861)
30 4b8j_A Importin subunit alpha- 93.7 4.4 0.00015 38.9 18.5 220 26-273 162-402 (528)
31 4db6_A Armadillo repeat protei 93.5 2.6 8.9E-05 34.7 14.5 188 55-271 11-209 (210)
32 1qgr_A Protein (importin beta 92.9 9 0.00031 38.9 20.3 220 35-272 228-480 (876)
33 1wa5_B Importin alpha subunit; 92.6 7 0.00024 37.5 18.1 220 26-273 175-414 (530)
34 4db8_A Armadillo-repeat protei 92.5 2.9 9.8E-05 35.5 13.7 188 55-271 11-209 (252)
35 3ltj_A Alpharep-4; protein eng 92.3 4 0.00014 33.4 18.6 185 19-269 9-196 (201)
36 2z6g_A B-catenin; FULL-length, 92.0 12 0.00041 38.2 23.4 137 25-173 151-304 (780)
37 3u0r_A Apoptosis inhibitor 5; 91.7 9.6 0.00033 36.4 23.8 289 22-338 27-366 (507)
38 4hxt_A De novo protein OR329; 91.5 5.6 0.00019 33.4 15.6 184 59-271 5-199 (252)
39 3ul1_B Importin subunit alpha- 89.8 14 0.00049 35.3 21.7 219 26-272 59-304 (510)
40 3tpo_A Importin subunit alpha- 86.6 23 0.00079 33.9 21.2 220 25-272 77-323 (529)
41 3ltm_A Alpha-REP4; protein eng 86.5 12 0.00042 30.6 18.0 189 22-274 17-206 (211)
42 2qk1_A Protein STU2; STU2P, XM 86.2 15 0.00053 31.5 15.4 178 34-235 26-223 (249)
43 2z6h_A Catenin beta-1, beta-ca 85.5 30 0.001 34.1 23.2 140 22-173 12-168 (644)
44 1jdh_A Beta-catenin; beta-cate 84.3 28 0.00095 32.8 22.0 140 22-173 15-171 (529)
45 2qk1_A Protein STU2; STU2P, XM 83.9 20 0.00068 30.8 18.2 181 67-273 26-222 (249)
46 1w63_A Adapter-related protein 83.2 37 0.0013 33.4 17.2 130 27-173 73-207 (618)
47 1w63_A Adapter-related protein 81.5 42 0.0015 32.9 18.6 54 32-87 115-172 (618)
48 1xqr_A HSPBP1 protein; armadil 80.3 31 0.0011 30.5 18.5 183 22-232 26-238 (296)
49 2vgl_A Adaptor protein complex 77.5 57 0.002 32.1 16.3 133 27-174 77-216 (621)
50 4db6_A Armadillo repeat protei 76.6 29 0.00098 28.1 14.9 172 32-231 20-208 (210)
51 2qk2_A LP04448P; mini spindles 75.8 35 0.0012 28.7 15.7 130 121-273 28-164 (242)
52 3ul1_B Importin subunit alpha- 74.5 60 0.0021 30.8 19.1 223 26-272 102-346 (510)
53 1oyz_A Hypothetical protein YI 73.7 42 0.0014 28.6 18.9 130 22-172 52-186 (280)
54 2x1g_F Cadmus; transport prote 70.9 12 0.00041 38.9 8.8 71 200-272 503-573 (971)
55 3grl_A General vesicular trans 70.6 20 0.00069 35.6 9.7 107 7-114 58-196 (651)
56 3oc3_A Helicase MOT1, MOT1; re 69.7 51 0.0018 32.5 11.9 183 38-266 242-431 (800)
57 3tpo_A Importin subunit alpha- 69.7 79 0.0027 30.1 22.0 223 26-272 121-365 (529)
58 3b2a_A TON_1937, putative unch 67.4 61 0.0021 28.0 13.5 133 120-276 45-184 (265)
59 2x19_B Importin-13; nuclear tr 66.7 14 0.00049 38.2 8.3 57 215-272 501-557 (963)
60 1wa5_C Importin alpha RE-expor 66.1 1.3E+02 0.0043 31.2 22.9 73 29-102 90-169 (960)
61 3ltm_A Alpha-REP4; protein eng 65.8 49 0.0017 26.8 10.2 60 23-84 80-139 (211)
62 3g2s_A C-terminal fragment of 64.8 21 0.00071 28.3 7.1 65 24-88 10-79 (149)
63 1mhq_A ADP-ribosylation factor 64.6 50 0.0017 26.0 11.5 63 26-88 2-69 (148)
64 3b2a_A TON_1937, putative unch 64.6 70 0.0024 27.7 21.3 212 20-275 6-222 (265)
65 1juq_A ADP-ribosylation factor 62.7 25 0.00085 28.5 7.3 65 24-88 12-81 (171)
66 1elk_A Target of MYB1; superhe 60.2 35 0.0012 27.1 7.7 64 25-88 16-85 (157)
67 3ldz_A STAM-1, signal transduc 60.0 58 0.002 25.2 11.6 63 26-88 6-73 (140)
68 1x5b_A Signal transducing adap 58.9 26 0.0009 28.1 6.8 63 26-88 16-83 (163)
69 3zyq_A Hepatocyte growth facto 55.5 38 0.0013 28.7 7.6 64 25-88 8-76 (226)
70 1xqr_A HSPBP1 protein; armadil 53.9 1.1E+02 0.0039 26.7 16.7 138 25-173 82-237 (296)
71 1w9c_A CRM1 protein, exportin 52.9 73 0.0025 28.6 9.3 17 256-272 87-104 (321)
72 3rru_A TOM1L1 protein; structu 52.8 59 0.002 25.7 7.8 64 25-88 16-85 (152)
73 3ltj_A Alpharep-4; protein eng 52.4 87 0.003 24.9 11.8 120 24-172 45-165 (201)
74 3ibv_A Exportin-T; karyopherin 52.2 2.1E+02 0.0073 29.8 14.1 61 68-141 204-264 (980)
75 1te4_A Conserved protein MTH18 51.2 26 0.00089 26.3 5.4 56 26-83 44-99 (131)
76 2of3_A ZYG-9; multifunctional 50.2 1.3E+02 0.0044 26.2 19.1 170 68-274 57-239 (266)
77 1dvp_A HRS, hepatocyte growth 47.1 59 0.002 27.3 7.5 63 26-88 6-73 (220)
78 3oc3_A Helicase MOT1, MOT1; re 46.1 2.3E+02 0.0079 28.0 14.8 200 57-270 172-403 (800)
79 2z6h_A Catenin beta-1, beta-ca 43.3 2.4E+02 0.0082 27.4 23.0 189 56-271 182-382 (644)
80 1jdh_A Beta-catenin; beta-cate 41.7 2.2E+02 0.0074 26.4 22.3 189 56-271 185-385 (529)
81 2jak_A Serine/threonine-protei 40.0 2.3E+02 0.0078 26.2 14.2 180 21-224 171-359 (392)
82 2z6g_A B-catenin; FULL-length, 39.5 3.1E+02 0.011 27.5 22.5 189 56-271 318-518 (780)
83 3a6p_A Exportin-5; exportin-5, 39.2 59 0.002 34.9 7.6 59 214-272 543-614 (1204)
84 3now_A UNC-45 protein, SD10334 39.2 3.3E+02 0.011 27.8 19.0 216 31-274 543-785 (810)
85 4hat_C Exportin-1; heat repeat 33.9 41 0.0014 35.4 5.2 72 200-272 493-570 (1023)
86 2iw3_A Elongation factor 3A; a 33.9 4.3E+02 0.015 27.6 20.1 189 23-236 13-208 (986)
87 3fga_B Serine/threonine-protei 33.7 2.9E+02 0.0099 25.5 16.8 228 21-274 126-369 (403)
88 4ffb_C Protein STU2; tubulin f 33.6 1.9E+02 0.0064 24.6 8.8 119 26-151 104-229 (278)
89 2npp_B PP2A, B subunit, serine 33.1 3.1E+02 0.011 25.7 16.2 228 21-273 159-401 (449)
90 3nmz_A APC variant protein; pr 32.0 3.2E+02 0.011 25.6 15.5 65 205-271 246-316 (458)
91 3i5q_B Nucleoporin NUP170; hel 29.1 2.8E+02 0.0094 23.9 11.7 48 20-68 15-78 (252)
92 1xm9_A Plakophilin 1; armadill 27.3 3.7E+02 0.013 24.8 21.4 118 26-155 4-136 (457)
93 2vgl_A Adaptor protein complex 27.1 4.4E+02 0.015 25.6 22.5 201 36-273 341-552 (621)
94 1te4_A Conserved protein MTH18 27.0 65 0.0022 23.9 4.1 59 22-83 10-68 (131)
95 3mab_A Uncharacterized protein 25.1 1.1E+02 0.0036 22.1 4.6 19 87-105 65-83 (93)
96 3dad_A FH1/FH2 domain-containi 22.3 4.3E+02 0.015 23.8 17.5 111 25-174 119-231 (339)
97 3g0l_A Hwalp4, bromodomain adj 22.1 2E+02 0.0068 21.1 5.9 94 38-139 12-109 (117)
98 4f52_E Glomulin; cullin-ring E 21.5 96 0.0033 30.4 5.0 59 33-91 375-436 (596)
99 3u7d_B Protein HEG homolog 1; 21.2 18 0.00061 18.9 -0.2 11 140-150 7-18 (26)
100 2x6h_A GH13170P, VPS34, phosph 20.6 3.9E+02 0.013 26.7 9.2 62 37-111 90-152 (696)
101 3bqs_A Uncharacterized protein 20.1 1.1E+02 0.0039 21.8 3.9 19 87-105 65-83 (93)
102 1e6i_A Transcriptional activat 20.1 1.7E+02 0.0057 21.8 5.1 99 40-146 14-118 (121)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=5.5e-57 Score=475.46 Aligned_cols=330 Identities=74% Similarity=1.188 Sum_probs=307.6
Q ss_pred hHHHhhcccccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhcc
Q psy13179 10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW 89 (352)
Q Consensus 10 ~~~~~l~~~~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W 89 (352)
+||.||||++++|++.|++++.++|+|++++|++|+++|++||++|++|..|..+|.+++++++||||+++|+++|+++|
T Consensus 14 ~~~~~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 14 AARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp CCCCCCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHhhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHH
Q psy13179 90 KALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVIL 169 (352)
Q Consensus 90 ~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL 169 (352)
+.+|+++|..||+++++++.+.+.+++..+.++.+++|++++++.|++++||+.||+|++++++.+++++.+++++|+||
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL 173 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVIL 173 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999876655444556888899999999999999999999999999999988888999999999
Q ss_pred HhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHH
Q psy13179 170 KLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLI 249 (352)
Q Consensus 170 ~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~ 249 (352)
+.|+|||+++.+..+++.|+..+|+.|++.++.|+++|..+|+..++++++..+|+|+++|++|+|++++++++++++++
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~ 253 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLI 253 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHH
Confidence 99999999886556788899999999999999999999999998889999999999999999999999999999999876
Q ss_pred HhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHH
Q psy13179 250 EKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTF 329 (352)
Q Consensus 250 ~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f 329 (352)
+.+++++.+|++|++||++|++++. ++|.+.+..+|..+++.+..++|...++...|..++++|++|++++|.|+++|
T Consensus 254 ~~~L~~~~~r~aA~dcL~eIv~k~~--~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~ 331 (1073)
T 3gjx_A 254 YKFLNVPMFRNVSLKCLTEIAGVSV--SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTF 331 (1073)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSCS--GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 7999999999999999999999964 57889999999999999999999999999999988999999999999999999
Q ss_pred HHHhhhhhcCCC
Q psy13179 330 LKEHGSLIEKKS 341 (352)
Q Consensus 330 ~~~~~~~le~~~ 341 (352)
++.|+.++|+.|
T Consensus 332 ~e~~~~lIe~~p 343 (1073)
T 3gjx_A 332 LKEHGQLLEKRL 343 (1073)
T ss_dssp HHHHHHHHHHCG
T ss_pred HHHHHHHHhcCc
Confidence 999999999864
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=8.8e-54 Score=452.50 Aligned_cols=337 Identities=45% Similarity=0.832 Sum_probs=310.0
Q ss_pred hHHHhhcccccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhcc
Q psy13179 10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW 89 (352)
Q Consensus 10 ~~~~~l~~~~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W 89 (352)
+||.||||++|+|++.|+++++++|+|++++|++|+++|++||++|++|..|..+|.++.++++||||+++|+++|+++|
T Consensus 2 ~~~~~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHG
T ss_pred chhHhhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 38999999999999999999999999988899999999999999999999999999888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHH
Q psy13179 90 KALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVIL 169 (352)
Q Consensus 90 ~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL 169 (352)
..+|+++|..||+++++++.+.+.++...+.++.+++|++++++.|++++||++||++++++++.+++++..++++|.+|
T Consensus 82 ~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL 161 (1023)
T 4hat_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVL 161 (1023)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999875444333445677799999999999999999999999999999998888899999999
Q ss_pred HhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHH
Q psy13179 170 KLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLI 249 (352)
Q Consensus 170 ~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~ 249 (352)
+.|+|||+++++..+++.|+..+++.|++.++.|+++|.++|+...++++++.+|+|+++|++|+|+++++++++++.++
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHH
Confidence 99999999987777889999999999999999999999999998888999999999999999999999999999999984
Q ss_pred HhhcCchhhHHHHHHHHHHHHhccCCcc--chHHHHHHHHHHHHHHH-HhcCCCCccHHHHhccCCcchHHHHHHHHHHH
Q psy13179 250 EKFLNVPLFRNVTLKCLTEIAAVSGTYS--NYENVYVALFTTTMAQL-QMMFPMDINIKQAYAMGKDTEQNFIQNLAMFL 326 (352)
Q Consensus 250 ~~~l~~~~~~~~al~cL~ei~~~~~~~~--~~~~~~~~~f~~~l~~l-~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l 326 (352)
..+++++.+|+.|++||++|++++.+++ .|++.+..+|..++..+ ..++|...++...|..++++|++|+++++.++
T Consensus 242 ~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~ 321 (1023)
T 4hat_C 242 TKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFL 321 (1023)
T ss_dssp THHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHH
Confidence 3889999999999999999999776223 58889999999999988 88999999999999888888999999999999
Q ss_pred HHHHHHhhhhhcCCCc-cHHH
Q psy13179 327 CTFLKEHGSLIEKKST-PEEM 346 (352)
Q Consensus 327 ~~f~~~~~~~le~~~~-~~~~ 346 (352)
++|++.|..++|+.++ ++++
T Consensus 322 ~~~~e~~~~li~~~~~~~~~l 342 (1023)
T 4hat_C 322 TTYLARNRALLESDESLRELL 342 (1023)
T ss_dssp HHHHHHHGGGGTSCGGGHHHH
T ss_pred HHHHHHHHHHHhCCcchhHHH
Confidence 9999999999998643 5543
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.7e-45 Score=393.52 Aligned_cols=331 Identities=46% Similarity=0.845 Sum_probs=299.6
Q ss_pred hHHHhhcccccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhcc
Q psy13179 10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW 89 (352)
Q Consensus 10 ~~~~~l~~~~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W 89 (352)
+||+||||+.++|++.|+++++++|+|++++|++|+++|++|+++|++|..|..+|.++.++++|+||+++|+++|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W 81 (1049)
T 3m1i_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKW 81 (1049)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTG
T ss_pred hhhHhcCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhC
Confidence 58999999999999999999999999998899999999999999999999999999888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHH
Q psy13179 90 KALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVIL 169 (352)
Q Consensus 90 ~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL 169 (352)
..+++++|..||+++++++.+...+++....++.+++|++.+++.|++++||++||++++++++.+++++..+++++.+|
T Consensus 82 ~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVL 161 (1049)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHH
Confidence 99999999999999999998764332222224667799999999999999999999999999999987677789999999
Q ss_pred HhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHH
Q psy13179 170 KLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLI 249 (352)
Q Consensus 170 ~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~ 249 (352)
+.|+||+.+++...++..|+.++|+.|+..++.|+.++.+++....++++...+|+|+.+|++|+|++.++++++++.++
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~ 241 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLS 241 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHH
Confidence 99999999876666778888899999999999999999999988778899999999999999999999999999999975
Q ss_pred HhhcCchhhHHHHHHHHHHHHhccCCcc--chHHHHHHHHHHHHHHHHh-cCCCCccHHHHhccCCcchHHHHHHHHHHH
Q psy13179 250 EKFLNVPLFRNVTLKCLTEIAAVSGTYS--NYENVYVALFTTTMAQLQM-MFPMDINIKQAYAMGKDTEQNFIQNLAMFL 326 (352)
Q Consensus 250 ~~~l~~~~~~~~al~cL~ei~~~~~~~~--~~~~~~~~~f~~~l~~l~~-~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l 326 (352)
..++.++.+|..|++||++|+++++++. ++.+++..+|..++..+.. ++|...++...|...++.|++|.++++.++
T Consensus 242 ~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~ 321 (1049)
T 3m1i_C 242 TKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFL 321 (1049)
T ss_dssp THHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHH
Confidence 4677899999999999999999987643 3677888899999998887 899888888888777788899999999999
Q ss_pred HHHHHHhhhhhcCC
Q psy13179 327 CTFLKEHGSLIEKK 340 (352)
Q Consensus 327 ~~f~~~~~~~le~~ 340 (352)
+.+++.|..++|..
T Consensus 322 ~~~~~~~~~~~~~~ 335 (1049)
T 3m1i_C 322 TTYLARNRALLESD 335 (1049)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999874
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1e-38 Score=337.12 Aligned_cols=298 Identities=18% Similarity=0.304 Sum_probs=243.7
Q ss_pred cCCHHHHHHHHHHHhcC--ChHhHHHHHHHHHHHhcCCChHHHHHHHhccCC--chHHHHHHHHHHHHHHhhccCCCCHH
Q psy13179 20 KLDITLLDNIVECMYTG--MGVEQKAAQEVLTALKEHPDAWTRVDTILEYSS--NQQTKFYALQILEQVIKTRWKALPRE 95 (352)
Q Consensus 20 ~~di~~L~~~v~~~~~~--~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~--~~~vrffal~~L~~~I~~~W~~l~~e 95 (352)
|||++++.+++++.|+| +++.|++|+++|++||++|++|..|..+|.+++ ++++||||+++|+++|+ .++++
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChh
Confidence 78999999999888887 567899999999999999999999999997764 89999999999999999 78999
Q ss_pred ----HHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh--hhhhHHHHHH
Q psy13179 96 ----QCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE--SLCQNNMVIL 169 (352)
Q Consensus 96 ----~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~--~~~~~~l~iL 169 (352)
++..||+++++++.+.+. ...++.+++|++.+++.|++++||+.||+|++++++.+++++ ......|++|
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~----~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSF----LDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCS----TTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 999999999999987321 123566779999999999999999999999999999997643 2445678888
Q ss_pred HhHHHHhhccC--CCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHhc---CCChHHHHHHHHHHHhccccCcchhhcccc
Q psy13179 170 KLLSEEVFDFS--GGQLTQAKAKHLKDSMCLQ-FSQIFTLCQFVLDN---SSNASLVGATLETLLRFLNWIPLGYIFETN 243 (352)
Q Consensus 170 ~~L~eEv~~~~--~~~l~~~r~~~lk~~l~~~-~~~i~~l~~~iL~~---~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ 243 (352)
..|+||+++.. ++.....|++.+|+.|+++ ++.|++.|..+|.. ..+++++..+|+|+++|++|+|++++++++
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ 233 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEP 233 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcch
Confidence 88889999864 2223457888999999986 89999999988876 367899999999999999999999999999
Q ss_pred hHHHHHHhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHH
Q psy13179 244 LITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLA 323 (352)
Q Consensus 244 ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~ 323 (352)
+++.+ +.+++++.+|.+|++||++|++++++|+...+.+ ..+ . +...+.. +. ....|.+|+++++
T Consensus 234 ll~~l-~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li-~~l----~-L~~~~~~---l~-----~~~~D~d~~~~la 298 (980)
T 3ibv_A 234 CMNLL-YSFLQIEELRCAACETMTEIVNKKMKPLEKLNLL-NIL----N-LNLFFSK---SQ-----EQSTDPNFDEHVA 298 (980)
T ss_dssp HHHHH-HHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHH-HHH----H-HHHHHCC-------------CCHHHHHHHH
T ss_pred HHHHH-HHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHH-HHH----h-HHHHHHH---Hh-----cccccHHHHHHHH
Confidence 99997 6899999999999999999999999854322222 221 1 2221211 00 1145778999999
Q ss_pred HHHHHHHHHhhhhhcCCC
Q psy13179 324 MFLCTFLKEHGSLIEKKS 341 (352)
Q Consensus 324 ~~l~~f~~~~~~~le~~~ 341 (352)
++++++++.+... ++.+
T Consensus 299 ~L~~~~ge~l~~~-~~~~ 315 (980)
T 3ibv_A 299 KLINAQGVELVAI-KSDP 315 (980)
T ss_dssp HHHHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHHHH-ccCc
Confidence 9999999998887 6543
No 5
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=327.61 Aligned_cols=303 Identities=23% Similarity=0.352 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHhcC--ChHhHHHHHHHHHHHhcCCChHHHHHHHhc-cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHH
Q psy13179 23 ITLLDNIVECMYTG--MGVEQKAAQEVLTALKEHPDAWTRVDTILE-YSSNQQTKFYALQILEQVIKTRWKALPREQCDG 99 (352)
Q Consensus 23 i~~L~~~v~~~~~~--~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~-~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ 99 (352)
++.++++++++|+| +++.|++|+++|++|+++|++|..+..+|. .+.++++||||+++|++.|+++|..+++++|..
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~ 89 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY 89 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 46789999999998 455799999999999999999999999886 677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhhcc
Q psy13179 100 IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDF 179 (352)
Q Consensus 100 ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~ 179 (352)
||+++++++.+.... ..+.++.+++|++++++.|++++||++||++++++++.+++++..+++++.+|..|+||+.++
T Consensus 90 Ir~~ll~~l~~~~~~--~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 90 LKNSVMELIANGTLN--ILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHHHSSCC--TTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 999999999874211 011356677999999999999999999999999999999887778999999999999999986
Q ss_pred CCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcC------------------CChHHHHHHHHHHHhccccCcchhhcc
Q psy13179 180 SGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNS------------------SNASLVGATLETLLRFLNWIPLGYIFE 241 (352)
Q Consensus 180 ~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~------------------~~~~l~~~~L~~l~~~l~Wi~~~~i~~ 241 (352)
. .++..|++.+++.|++.++.|+.++.+++... .++.++..+|+|+.+|++|+|++.+++
T Consensus 168 ~--~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~ 245 (1204)
T 3a6p_A 168 Q--TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITA 245 (1204)
T ss_dssp C--CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHT
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHh
Confidence 3 24557888999999999999999999998652 235689999999999999999999887
Q ss_pred cc--hHHHHHHhhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHH-HHHHHHHhc---CCCCccHHHHhccCCcch
Q psy13179 242 TN--LITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFT-TTMAQLQMM---FPMDINIKQAYAMGKDTE 315 (352)
Q Consensus 242 ~~--ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~-~~l~~l~~~---~p~~~~~~~~~~~~~~~~ 315 (352)
.+ +++.+ +.+++++.+|..|++||++|+++++.++.+.+ +..++. ..+..+... .+. ...++.+
T Consensus 246 ~~~~ll~~l-~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~-li~~l~~~~l~~l~~~~~~~~~--------~~~~e~d 315 (1204)
T 3a6p_A 246 ENCKLLEIL-CLLLNEQELQLGAAECLLIAVSRKGKLEDRKP-LMVLFGDVAMHYILSAAQTADG--------GGLVEKH 315 (1204)
T ss_dssp TTSHHHHHH-HHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGG-GGGGGSHHHHHHHHHHHHTCCC--------CSCCHHH
T ss_pred ccchHHHHH-HHHcCCHHHHHHHHHHHHHHHhCCCChhhHHH-HHHHHhhHHHHHHHHHhhcCCC--------CCCccHH
Confidence 64 89987 57889999999999999999999886432221 112221 111112111 110 1124556
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC
Q psy13179 316 QNFIQNLAMFLCTFLKEHGSLIEK 339 (352)
Q Consensus 316 ~~f~~~l~~~l~~f~~~~~~~le~ 339 (352)
.+|+++++.+++.++..+.+++++
T Consensus 316 ~e~~k~l~~ll~~lg~~l~~l~~~ 339 (1204)
T 3a6p_A 316 YVFLKRLCQVLCALGNQLCALLGA 339 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999887777764
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=4.1e-34 Score=302.96 Aligned_cols=294 Identities=16% Similarity=0.270 Sum_probs=235.3
Q ss_pred CCHHHHHHHHHHHhc-CChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHH
Q psy13179 21 LDITLLDNIVECMYT-GMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDG 99 (352)
Q Consensus 21 ~di~~L~~~v~~~~~-~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ 99 (352)
+|++.++++++++|. |+++.|++|+++|++||++|++|.+|..+|.++.++++|+||+++|+++|+++|+.+++++|..
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 589999999999664 7888999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhccc------ChhhhhHHHHHHHhHH
Q psy13179 100 IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKT------NESLCQNNMVILKLLS 173 (352)
Q Consensus 100 ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~------~~~~~~~~l~iL~~L~ 173 (352)
||+++++++.+... .++.+++|++.+++.|++++||++||++++++++.+++ ++..++.++.+|+.++
T Consensus 101 ir~~ll~~l~~~~~------~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 101 LKAQLFTQITRFAS------GSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp HHHHHHHHHHHTTT------SCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 99999999987531 25667799999999999999999999999999999876 5567899999999999
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhccccCcchhhcc--cchHHHHHH
Q psy13179 174 EEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNA-SLVGATLETLLRFLNWIPLGYIFE--TNLITTLIE 250 (352)
Q Consensus 174 eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~-~l~~~~L~~l~~~l~Wi~~~~i~~--~~ll~~l~~ 250 (352)
||++++.. +..|+..+++.+...++.+++++.+++....++ .+...+|+|+.+|+ +++.... +++++.+ +
T Consensus 175 ee~~~~~~---~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi---~~~~~~~~~~~ll~~l-~ 247 (963)
T 2x19_B 175 EEFQTSRL---PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWV---QLEVPLQDCEALIQAA-F 247 (963)
T ss_dssp HHHTTCCC------------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHH---TSSCCGGGTHHHHHHH-H
T ss_pred HHHhcccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH---cCCCCcccchHHHHHH-H
Confidence 99987532 566777888889999999999999999765443 58888988887644 4444443 6788887 5
Q ss_pred hhcCchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHhccCCcchHHHHHHHHHHHHHHH
Q psy13179 251 KFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNLAMFLCTFL 330 (352)
Q Consensus 251 ~~l~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~f~~~l~~~l~~f~ 330 (352)
.++.++.+|..|++|+.++++++.+ +.+.+.+..+++.+++.+. ++...+.. .|.+++++++.+++.++
T Consensus 248 ~~l~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~~~l~~~~~~~~~-------~~~~~~~~---~d~~~~~~~~~l~~~~~ 316 (963)
T 2x19_B 248 AALQDSELFDSSVEAIVNAISQPDA-QRYVNTLLKLIPLVLGLQE-------QLRQAVQN---GDMETSHGICRIAVALG 316 (963)
T ss_dssp HHTTSTTTHHHHHHHHHHHHTCTTG-GGCHHHHHHHHHHHHTTHH-------HHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHHccccc-ccCHHHHHHHHHHHHhhHH-------HHHHHHHC---CCHHHHHHHHHHHHHHH
Confidence 7788999999999999999997654 3355555566665544321 12222221 34578899999999999
Q ss_pred HHhhhhhc
Q psy13179 331 KEHGSLIE 338 (352)
Q Consensus 331 ~~~~~~le 338 (352)
+.|...++
T Consensus 317 ~~~~~~l~ 324 (963)
T 2x19_B 317 ENHSRALL 324 (963)
T ss_dssp HHHHHHHH
T ss_pred HHhHHHHH
Confidence 99887665
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.6e-35 Score=310.05 Aligned_cols=294 Identities=18% Similarity=0.288 Sum_probs=227.7
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHH
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGI 100 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i 100 (352)
+|++.|+++++++|+|+++.|++|+++|++||++|++|.+|..+|..+.++++|+||+++|+++|+++|..+|+++|..+
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 68899999999999999889999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhccc-------ChhhhhHHHHHHHhHH
Q psy13179 101 KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKT-------NESLCQNNMVILKLLS 173 (352)
Q Consensus 101 k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~-------~~~~~~~~l~iL~~L~ 173 (352)
|+++++++.+... .++.+++|++.+++.|++++|| .||++++++++.+++ ++..++.++.+|+.++
T Consensus 84 r~~ll~~l~~~~~------~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 156 (971)
T 2x1g_F 84 KQKILESIVRFAG------GPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP 156 (971)
T ss_dssp HHHHHHHHHHHTT------SCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 9999999988642 2566779999999999999999 999999999999876 4567899999999999
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhccc--cCcchhhcccch
Q psy13179 174 EEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNA-------SLVGATLETLLRFLN--WIPLGYIFETNL 244 (352)
Q Consensus 174 eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~-------~l~~~~L~~l~~~l~--Wi~~~~i~~~~l 244 (352)
||++... +..|+..+++.+...++.+++++.+++....++ .+...+|+|+++|+. |+|.+ .++++
T Consensus 157 EEi~~~~----~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~l 230 (971)
T 2x1g_F 157 EEAQVIH----TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTI 230 (971)
T ss_dssp HHHHHCC----CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHH
T ss_pred HHHhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccH
Confidence 9988643 334667888999999999999999999765443 789999999999999 99998 66788
Q ss_pred HHHHHH---hhc-------------CchhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHhcCCCCccHHHHh
Q psy13179 245 ITTLIE---KFL-------------NVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAY 308 (352)
Q Consensus 245 l~~l~~---~~l-------------~~~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~~~~p~~~~~~~~~ 308 (352)
++.++. +++ +++.+|+.|++||.+|++++.. ..+.+.+..+++.+++....+ ....
T Consensus 231 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-~~~~~~~~~l~~~~~~~~~~~-------~~~~ 302 (971)
T 2x1g_F 231 TAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC-HNYPKTAFVLIKMFLDSLSEI-------TKTE 302 (971)
T ss_dssp HHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG-GGCHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc-cccHHHHHHHHHHHHHhHHHH-------HHHH
Confidence 887743 122 5789999999999999998643 334455555666555432211 1110
Q ss_pred ccCCcch---HHHHHHHHHHHHHHHHHhhhhhc
Q psy13179 309 AMGKDTE---QNFIQNLAMFLCTFLKEHGSLIE 338 (352)
Q Consensus 309 ~~~~~~~---~~f~~~l~~~l~~f~~~~~~~le 338 (352)
.+.| +++...++++++.|++.|.+.+.
T Consensus 303 ---~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~ 332 (971)
T 2x1g_F 303 ---WKRENDNEDIIVHIYMLFVSSVERHSTLLL 332 (971)
T ss_dssp ---SSSSCSCSHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ---hcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 47888999999999998877654
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.87 E-value=1e-19 Score=192.92 Aligned_cols=236 Identities=12% Similarity=0.172 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhcc-CCchHHHHHHHHHHHHHHhhccC------CCCH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEY-SSNQQTKFYALQILEQVIKTRWK------ALPR 94 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~-s~~~~vrffal~~L~~~I~~~W~------~l~~ 94 (352)
|++.+.+++....+|+++.| |+++|++++++|++|..+.+++.+ +.+..+|++|+.+||+.|+++|. .+++
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~ 80 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCH
Confidence 56788899988888888777 999999999999999999999854 45789999999999999999998 7999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHH
Q psy13179 95 EQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLS 173 (352)
Q Consensus 95 e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~ 173 (352)
++|..||+.+++.+.. .++.++++++.+++.|+++|||++||++++++++.+++++ ...+.+|.+|..++
T Consensus 81 ~~k~~ik~~ll~~l~~---------~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 81 NNVELIKKEIVPLMIS---------LPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp HHHHHHHHHHHHHHHH---------SCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999975 2466779999999999999999999999999999997654 45667888888887
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHH---HhcCCCh--------HHHHHHHHHHHhccccCcchhhccc
Q psy13179 174 EEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFV---LDNSSNA--------SLVGATLETLLRFLNWIPLGYIFET 242 (352)
Q Consensus 174 eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~i---L~~~~~~--------~l~~~~L~~l~~~l~Wi~~~~i~~~ 242 (352)
++.-. .-.....+.+++..+...++.+++++..+ +...... ++...+++++.. +.|.+....+..
T Consensus 152 ~~~~~---~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~-l~~~~~~~~~~~ 227 (960)
T 1wa5_C 152 KRWRP---LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYD-FNCQDIPEFFED 227 (960)
T ss_dssp GGGTT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHH-HHSSCCCHHHHH
T ss_pred HHHHH---hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhccchHHHHH
Confidence 65211 00122223356666777777777766554 4432211 334456677755 455555444432
Q ss_pred ---chHHHHHHhhcC--------c---------hhhHHHHHHHHHHHHhcc
Q psy13179 243 ---NLITTLIEKFLN--------V---------PLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 243 ---~ll~~l~~~~l~--------~---------~~~~~~al~cL~ei~~~~ 273 (352)
.+++.+ ..++. + ..++..+++||..++++.
T Consensus 228 ~~~~~~~~~-~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~ 277 (960)
T 1wa5_C 228 NIQVGMGIF-HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY 277 (960)
T ss_dssp THHHHHHHH-HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 355543 33331 1 135678899999998754
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.82 E-value=1.2e-18 Score=181.49 Aligned_cols=231 Identities=13% Similarity=0.152 Sum_probs=184.8
Q ss_pred CCHHHHHHHHHHH-hcCChHhHHHHHHHHHHHhcC--CChHHHHHHHhccC-CchHHHHHHHHHHHHHHhhc--------
Q psy13179 21 LDITLLDNIVECM-YTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTR-------- 88 (352)
Q Consensus 21 ~di~~L~~~v~~~-~~~~~~~r~~A~~~L~~fk~~--p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I~~~-------- 88 (352)
||...+.+++..+ ++|+++.|++|++.|++++++ |++|..+.+++.++ .++.+|++|+.+|++.|+++
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 5778899999999 999999999999999999986 89999999999765 58899999999999998765
Q ss_pred ---cCC-CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhcccC--hhh
Q psy13179 89 ---WKA-LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGASKTN--ESL 161 (352)
Q Consensus 89 ---W~~-l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~~~~--~~~ 161 (352)
|.. +++++|..||+.+++.+.. .++.++++++.+++.|++++||. .||++++.+++.+.++ +..
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~---------~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~ 151 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS---------IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENV 151 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCC---------CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHH
Confidence 575 9999999999999998743 24567899999999999999995 9999999999999764 466
Q ss_pred hhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhccccCcchhhc
Q psy13179 162 CQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNS-SNASLVGATLETLLRFLNWIPLGYIF 240 (352)
Q Consensus 162 ~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~-~~~~l~~~~L~~l~~~l~Wi~~~~i~ 240 (352)
++.++.+|..+++++.. . . | .+....+.++..+...+... .++.+...+++++..++.|++...-.
T Consensus 152 r~~al~~l~~l~~~~~~---~-~---~------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~ 218 (861)
T 2bpt_A 152 KRASLLALGYMCESADP---Q-S---Q------ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER 218 (861)
T ss_dssp HHHHHHHHHHHHHTSST---T-S---S------TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred HHHHHHHHHHHHHcCCh---h-h---h------HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccC
Confidence 78899999999886331 1 1 1 13344566777777777654 27889999999999998887532110
Q ss_pred ---ccchHHHHHHhhc--CchhhHHHHHHHHHHHHhccC
Q psy13179 241 ---ETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 241 ---~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~ 274 (352)
.+.+++.+ ...+ .++.+|..+++||..++....
T Consensus 219 ~~~~~~ll~~l-~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 219 EGERNYLMQVV-CEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHHHHHHHH-HHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred hhHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 12356665 3444 467899999999999997654
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=6.8e-19 Score=184.14 Aligned_cols=230 Identities=14% Similarity=0.216 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhc--cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILE--YSSNQQTKFYALQILEQVIKTRWKALPREQCDG 99 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~--~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ 99 (352)
++++|.++++..++|+++.|++|++.|++++++|++|..+..++. .+.++.+|++|+..|++.|+++|..+++++|..
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ 90 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF 90 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 456788888888999999999999999999999999999999997 567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhc
Q psy13179 100 IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFD 178 (352)
Q Consensus 100 ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~ 178 (352)
||+.+++.+.. .++.++++++.+++.|++++||..||++++.+++.++++ ....+.++.+|..++++...
T Consensus 91 ik~~ll~~l~~---------~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 91 IKSECLNNIGD---------SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHTTTTC---------SSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999998631 355678999999999999999999999999999999764 35677889999998887432
Q ss_pred cCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhh-cccchHHHHHHhhc--Cc
Q psy13179 179 FSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYI-FETNLITTLIEKFL--NV 255 (352)
Q Consensus 179 ~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i-~~~~ll~~l~~~~l--~~ 255 (352)
. + +. +.+...+..++..+.+.+. ..++.+...+++++..++...+-... .-+++++.+ ...+ .+
T Consensus 162 ~----~---~~----~~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l-~~~~~d~~ 228 (852)
T 4fdd_A 162 I----L---DS----DVLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENL-FALAGDEE 228 (852)
T ss_dssp H----H---HH----CSSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHH-HHHHTCCC
T ss_pred H----h---ch----hhhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHcCCCC
Confidence 1 0 00 0011123334444444444 45788999999999988876542211 112466665 3444 45
Q ss_pred hhhHHHHHHHHHHHHhcc
Q psy13179 256 PLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 256 ~~~~~~al~cL~ei~~~~ 273 (352)
+.+|..|++||..++...
T Consensus 229 ~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 229 PEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 789999999999999754
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.79 E-value=4.2e-18 Score=164.65 Aligned_cols=223 Identities=15% Similarity=0.194 Sum_probs=176.0
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhc--CCChHHHHHHHhccC-CchHHHHHHHHHHHHHHhhc-----------cCC
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKE--HPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTR-----------WKA 91 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~--~p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I~~~-----------W~~ 91 (352)
|.+++..+++|+++.|++|++.|+++++ .|+.|..+..++.++ .++.+|++|+.+|++.|+++ |..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 6788889999999999999999999998 589999999999765 47899999999999999776 688
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhcccC---hhhhhHHHH
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGASKTN---ESLCQNNMV 167 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~~~~---~~~~~~~l~ 167 (352)
++++.|..||+.+++.+.. .++.+ ++++.+++.|++++||+ .||++++.+++.++++ +..++.++.
T Consensus 83 l~~~~~~~ik~~ll~~l~~---------~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGT---------ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTC---------CCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC---------CCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 9999999999999998753 23345 89999999999999995 9999999999998654 456788999
Q ss_pred HHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhccccCcchh---hcccc
Q psy13179 168 ILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSS-NASLVGATLETLLRFLNWIPLGY---IFETN 243 (352)
Q Consensus 168 iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~-~~~l~~~~L~~l~~~l~Wi~~~~---i~~~~ 243 (352)
+|..++++... . .+....+.++..+...+.... ++.+...+++++..++.++.... .+...
T Consensus 153 ~l~~l~~~~~~---~------------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 217 (462)
T 1ibr_B 153 AIGYICQDIDP---E------------QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF 217 (462)
T ss_dssp HHHHHHHHSCG---G------------GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH
T ss_pred HHHHHHHhCCc---h------------hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999987421 0 023344567788888887653 68899999999999776653211 01112
Q ss_pred hHHHHHHhhc--CchhhHHHHHHHHHHHHhccC
Q psy13179 244 LITTLIEKFL--NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 244 ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~ 274 (352)
+++.+ ...+ .++.+|..+++||..++....
T Consensus 218 l~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 218 IMQVV-CEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35554 3444 467899999999999997653
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.67 E-value=4.5e-15 Score=154.78 Aligned_cols=223 Identities=15% Similarity=0.206 Sum_probs=177.0
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcC--CChHHHHHHHhccC-CchHHHHHHHHHHHHHH-----------hhccCC
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEYS-SNQQTKFYALQILEQVI-----------KTRWKA 91 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~--p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I-----------~~~W~~ 91 (352)
|.+++..+.+|+++.|++|+++|++++++ |+.|..+..++.++ .++.+|++|+.+|++.| .++|..
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 67888888999999999999999999987 89999999998764 57899999999999987 467999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcC-CCcchhHHHHHHhcccC---hhhhhHHHH
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWP-KNWQSFIPDIVGASKTN---ESLCQNNMV 167 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P-~~Wp~fi~~l~~~~~~~---~~~~~~~l~ 167 (352)
++++.|..||+.+++.+.. .++.+ ++++++++.|+++++| .+||++++.+.+.+.++ +.....++.
T Consensus 83 l~~~~~~~ik~~ll~~l~~---------~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~ 152 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGT---------ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLE 152 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTT---------CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCC---------CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999998743 22335 8999999999999999 89999999999988654 356677888
Q ss_pred HHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhccccCcchhh---cccc
Q psy13179 168 ILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSS-NASLVGATLETLLRFLNWIPLGYI---FETN 243 (352)
Q Consensus 168 iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~-~~~l~~~~L~~l~~~l~Wi~~~~i---~~~~ 243 (352)
+|..+++++. + +.+....+.++..+...+.... ++.+...+++++..++.+++...- ....
T Consensus 153 ~l~~l~~~~~--------~-------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 217 (876)
T 1qgr_A 153 AIGYICQDID--------P-------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF 217 (876)
T ss_dssp HHHHHHHHSC--------H-------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred HHHHHHHhcC--------H-------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9988887631 1 1255667788888888886542 678889999999998877653211 1112
Q ss_pred hHHHHHHhhc--CchhhHHHHHHHHHHHHhccC
Q psy13179 244 LITTLIEKFL--NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 244 ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~~ 274 (352)
+++.+ ...+ .++.+|..+++||..++....
T Consensus 218 il~~l-~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 218 IMQVV-CEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 56665 4444 357889999999999997653
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.19 E-value=3.8e-05 Score=83.17 Aligned_cols=216 Identities=15% Similarity=0.107 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCC------ChH----HHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHP------DAW----TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p------~~w----~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
..+.++++.+.+|+++.|.+|.+-|.+.-+.+ ... ..+...|. +.++.+|..|+..|...+. .++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KVK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TSC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH----hCC
Confidence 56788888889999999999988887764433 122 22333343 6789999999999988775 467
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC---------CcchhHHHHHHhccc--Chhhh
Q psy13179 94 REQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK---------NWQSFIPDIVGASKT--NESLC 162 (352)
Q Consensus 94 ~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~---------~Wp~fi~~l~~~~~~--~~~~~ 162 (352)
++.+..++..+++.+. + .+..++...+.+++.|+....|. .|+.+++.+++.+.. +....
T Consensus 81 ~~~~~~i~~~Ll~~l~----d-----~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~ 151 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNML----S-----DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ 151 (1230)
T ss_dssp HHHHHHHHHHHHHHTT----C-----SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHHHHHHHhc----C-----CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 7777777777766553 1 23456788899999999887766 499999999998863 34566
Q ss_pred hHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhccc
Q psy13179 163 QNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFET 242 (352)
Q Consensus 163 ~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~ 242 (352)
..++.+|..+.+...+ .+. ...+.++..+...|. +.++.+...++.++..+....+... + +
T Consensus 152 ~~al~~l~~~~~~~~~----~l~------------~~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~~~-~-~ 212 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGG----LLV------------NFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGNIV-F-V 212 (1230)
T ss_dssp HHHHHHHHHHHHHTCS----SCT------------TTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC-----C-T
T ss_pred HHHHHHHHHHHHHhHh----HHH------------HHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCHHH-H-H
Confidence 7788888877764221 111 122345554444554 3567889999999999987766433 3 2
Q ss_pred chHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 243 NLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 243 ~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
.+++.+...+. .++..|..+++|+..++..
T Consensus 213 ~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 213 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 45555422222 2346888899999998864
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.72 E-value=0.23 Score=42.37 Aligned_cols=221 Identities=12% Similarity=0.122 Sum_probs=136.0
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCC----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e 95 (352)
+..++..+.+++.+.|..|-..|..+-... ++...+..+|.+ .++.+|..|+.+|.+.... +++
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~-----~~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG-----PDE 77 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-----CHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC-----ChH
Confidence 556666666666666777777777765443 456666666654 5689999999999887642 244
Q ss_pred HHHHHH-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc-----chhHHHHHHhcccCh-hhhhHHHHH
Q psy13179 96 QCDGIK-KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW-----QSFIPDIVGASKTNE-SLCQNNMVI 168 (352)
Q Consensus 96 ~k~~ik-~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W-----p~fi~~l~~~~~~~~-~~~~~~l~i 168 (352)
.+..+. ...+..+...-.+ .++.++...+.++..+.... |+.. ...++.+++.+..+. ......+.+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 151 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 444443 3355666555332 34567778888888877421 1111 246777777776543 455566667
Q ss_pred HHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccchHH
Q psy13179 169 LKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETNLIT 246 (352)
Q Consensus 169 L~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ll~ 246 (352)
|..++.. ...+.. .+.+ ..++..+..++. +.++.+...++.++..+...-+ ...+.+.+.++
T Consensus 152 L~~l~~~---------~~~~~~----~~~~--~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 215 (252)
T 4hxt_A 152 LANIASG---------PDEAIK----AIVD--AGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215 (252)
T ss_dssp HHHHTTS---------CHHHHH----HHHH--TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH
T ss_pred HHHHHcC---------CHHHHH----HHHH--CcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 7666531 111111 1211 123344444554 4678899999999988775432 22445566777
Q ss_pred HHHHhhc--CchhhHHHHHHHHHHHHhccCC
Q psy13179 247 TLIEKFL--NVPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 247 ~l~~~~l--~~~~~~~~al~cL~ei~~~~~~ 275 (352)
.+ ..++ .++.++..|+.+|..+......
T Consensus 216 ~L-~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 216 VL-QKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HH-HHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HH-HHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 76 4555 4678999999999999987654
No 15
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.24 E-value=0.41 Score=47.38 Aligned_cols=231 Identities=14% Similarity=0.142 Sum_probs=124.2
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhc-CCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKE-HPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
+-.+++.+-+++...|+.+.-.+..+-+ .|+.-..+...+. .+.++.+|-.|+.+|-+.. +++-...+
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l- 122 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYL- 122 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHH-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHH-
Confidence 3445554444555677777777777655 4555443333332 2567888888877664431 33333333
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcc--hhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhc
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQ--SFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFD 178 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp--~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~ 178 (352)
...+.+...+ .++.++.+.+.++..|.+. .|+.++ .+++.+...+..++ ..+.+++..|..+.++-.+
T Consensus 123 ---~~~l~~~L~d-----~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~ 193 (591)
T 2vgl_B 123 ---CEPLRKCLKD-----EDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPN 193 (591)
T ss_dssp ---HHHHHHHSSC-----SCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred ---HHHHHHHcCC-----CChHHHHHHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCC
Confidence 3333333222 3667779999999999985 599888 58889988886543 4555666666665543110
Q ss_pred cCCCcccHHHHHHHHHHHHHhH----------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc
Q psy13179 179 FSGGQLTQAKAKHLKDSMCLQF----------------------SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL 236 (352)
Q Consensus 179 ~~~~~l~~~r~~~lk~~l~~~~----------------------~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~ 236 (352)
...-.+....-..+-..+...- ..+++.+...+. +.++.++..+.+++..+..-++.
T Consensus 194 ~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~-~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 194 SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLS-HANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSC-SSTTHHHHHHHHHHHHSCCSCCB
T ss_pred ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHhhccCC
Confidence 0000111111111222221111 122222222221 35667888888888776544411
Q ss_pred h-hhcc---cchHHHHHHhhcCchhhHHHHHHHHHHHHhccC
Q psy13179 237 G-YIFE---TNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 237 ~-~i~~---~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~~~ 274 (352)
+ ..+. ..+.+.++...-.++.+|-.|+++|..++...+
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCh
Confidence 1 1111 123333322223688999999999999987643
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.72 E-value=0.92 Score=43.95 Aligned_cols=205 Identities=9% Similarity=-0.002 Sum_probs=122.0
Q ss_pred cCChHhHHHHHHHHHHHhcC-CC--hHHHHHHHh---ccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q psy13179 35 TGMGVEQKAAQEVLTALKEH-PD--AWTRVDTIL---EYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLI 108 (352)
Q Consensus 35 ~~~~~~r~~A~~~L~~fk~~-p~--~w~~~~~iL---~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l 108 (352)
+++...|+.|-+.|.++-.. |. .+.....++ ..+.+..+|..|+.++..... .+++..+ ..++..+
T Consensus 98 ~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~----~~~~~~~----~~l~~~l 169 (588)
T 1b3u_A 98 VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP----RVSSAVK----AELRQYF 169 (588)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT----TSCHHHH----HHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH----hcCHHHH----HHHHHHH
Confidence 34566788888888887653 21 233333332 245677889988888877543 3555444 4444444
Q ss_pred HHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-CcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccH
Q psy13179 109 IKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQ 186 (352)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~ 186 (352)
.....+ .++.++...+..+..++...-++ .++.+++.+....+.. ......++..|..+.+.+. .
T Consensus 170 ~~l~~d-----~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~ 236 (588)
T 1b3u_A 170 RNLCSD-----DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP--------Q 236 (588)
T ss_dssp HHHHTC-----SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC--------H
T ss_pred HHHhCC-----CCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC--------H
Confidence 444333 35677888899999988753222 2466777777766543 2344555666666554311 1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--CchhhHHHHHH
Q psy13179 187 AKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLK 264 (352)
Q Consensus 187 ~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~ 264 (352)
.. . .+.++..+...+. ..+..+...+.++++.+....+.+. +.+.+++.+ ..++ +++.+|..|+.
T Consensus 237 ~~-------~---~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l-~~~l~d~~~~vr~~a~~ 303 (588)
T 1b3u_A 237 ED-------L---EALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEI-TKTDLVPAF-QNLMKDCEAEVRAAASH 303 (588)
T ss_dssp HH-------H---HHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHH-HHHHTCSSHHHHHHHHH
T ss_pred HH-------H---HHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCccc-chhHHHHHH-HHHhCCCcHHHHHHHHH
Confidence 00 0 1223333333443 3567788888888888766554322 234566765 4445 35689999999
Q ss_pred HHHHHHhcc
Q psy13179 265 CLTEIAAVS 273 (352)
Q Consensus 265 cL~ei~~~~ 273 (352)
+|..++..-
T Consensus 304 ~l~~~~~~~ 312 (588)
T 1b3u_A 304 KVKEFCENL 312 (588)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHh
Confidence 999988754
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.69 E-value=1 Score=42.15 Aligned_cols=233 Identities=9% Similarity=0.083 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhcC--ChHhHHHHHHHHHHHhcC--C--------ChHHHHHHHhccCC-chHHHHHHHHHHHHHHhhccC
Q psy13179 24 TLLDNIVECMYTG--MGVEQKAAQEVLTALKEH--P--------DAWTRVDTILEYSS-NQQTKFYALQILEQVIKTRWK 90 (352)
Q Consensus 24 ~~L~~~v~~~~~~--~~~~r~~A~~~L~~fk~~--p--------~~w~~~~~iL~~s~-~~~vrffal~~L~~~I~~~W~ 90 (352)
+.+..+++.+-++ +...|..|-..|..+-+. + .....+...+.... ++.+|.-|+.++.+.+..
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~--- 204 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF--- 204 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH---
Confidence 4566666666666 566788888888776542 1 12334444555443 789999999999886532
Q ss_pred CCCHH-HHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC----Ccc-hhHHHHHHhccc-Chhhhh
Q psy13179 91 ALPRE-QCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK----NWQ-SFIPDIVGASKT-NESLCQ 163 (352)
Q Consensus 91 ~l~~e-~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~----~Wp-~fi~~l~~~~~~-~~~~~~ 163 (352)
+.+. .....+.+++..+.....+ .+..++..++.+++.++... |. .-+ .+++-++...+. ++....
T Consensus 205 -~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~vr~~~~~~l~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 277 (462)
T 1ibr_B 205 -TKANFDKESERHFIMQVVCEATQC-----PDTRVRVAALQNLVKIMSLY-YQYMETYMGPALFAITIEAMKSDIDEVAL 277 (462)
T ss_dssp -THHHHTSHHHHHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHC-GGGCTTTTTTTHHHHHHHHHHCSSHHHHH
T ss_pred -HHHhhhhhHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 1111 1122456666666554332 35567788899999998763 32 234 555555544433 234455
Q ss_pred HHHHHHHhHHHHhhc---cCC----CcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcC------CChHHHHHHHHHHHhc
Q psy13179 164 NNMVILKLLSEEVFD---FSG----GQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNS------SNASLVGATLETLLRF 230 (352)
Q Consensus 164 ~~l~iL~~L~eEv~~---~~~----~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~------~~~~l~~~~L~~l~~~ 230 (352)
..+.++..+++...+ +.. ...+..+ .....+....+.++..+...+... .+......+..++..+
T Consensus 278 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l 355 (462)
T 1ibr_B 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH--TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC--CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCccc--hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence 666777666654211 000 0000000 001111222345555555555432 2235677788888877
Q ss_pred cccCcchhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 231 LNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 231 l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
....+ +.++ +.+++.+ ...+ .+...|..|+.+|..++.
T Consensus 356 ~~~~~-~~~~-~~~~~~l-~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 356 ATCCE-DDIV-PHVLPFI-KEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHTT-TTHH-HHHHHHH-HHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHhcc-HHHH-HHHHHHH-HHHhcCCChHHHHHHHHHHHHHhc
Confidence 66665 3322 3566665 4555 356789999999999886
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.69 E-value=0.18 Score=49.14 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcC--chhhHHHHHHHHHHHHhc
Q psy13179 202 QIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLN--VPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 202 ~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~--~~~~~~~al~cL~ei~~~ 272 (352)
.++..+...+. ..++.+...+++++..+....+... ..+.+++.+ ..++. +..+|..|+++|..++..
T Consensus 203 ~l~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 203 EIIPMFSNLAS-DEQDSVRLLAVEACVNIAQLLPQED-LEALVMPTL-RQAAEDKSWRVRYMVADKFTELQKA 272 (588)
T ss_dssp THHHHHHHHHT-CSCHHHHTTHHHHHHHHHHHSCHHH-HHHHTHHHH-HHHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHH-HHHccCCCHHHHHHHHHHHHHHHHH
Confidence 34555554443 3567788888888888766655432 223466665 45554 457899999999988864
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.61 E-value=0.83 Score=42.68 Aligned_cols=219 Identities=13% Similarity=0.104 Sum_probs=132.7
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHh---cCC---------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALK---EHP---------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk---~~p---------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
+..+++.+.+++...|..|-..|.++- .+| +........|..+.++.+|..|+.+|.+.... +
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~-----~ 96 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG-----N 96 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS-----C
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----C
Confidence 566777777777778888888887752 232 45666677776655899999999999987752 2
Q ss_pred HHH-HHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC-----cchhHHHHHHhccc--ChhhhhHH
Q psy13179 94 REQ-CDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN-----WQSFIPDIVGASKT--NESLCQNN 165 (352)
Q Consensus 94 ~e~-k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~-----Wp~fi~~l~~~~~~--~~~~~~~~ 165 (352)
++. +..++..++..+.....+ .++.++...+.++..++... |.. =...++.+++.+.. +.......
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~-----~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a 170 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSS-----EFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNA 170 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHH
Confidence 222 333344566666655432 34567777888888887642 110 12567778887764 34556667
Q ss_pred HHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccc
Q psy13179 166 MVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETN 243 (352)
Q Consensus 166 l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ 243 (352)
+..|..++.. ..... +.. .+...++.++ .++. ..++.+...++.++..+..-.+ ...+...+
T Consensus 171 ~~~L~~l~~~----~~~~~---~~~----~~~~~l~~L~----~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 171 VWALSNLCRG----KSPPP---EFA----KVSPCLNVLS----WLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp HHHHHHHHCC----SSSCC---CGG----GTGGGHHHHH----HHTT-CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred HHHHHHHhCC----CCCCC---CHH----HHHHHHHHHH----HHHc-cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 7777777642 10100 000 0112233333 3443 3567788888888877654332 12334455
Q ss_pred hHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 244 LITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 244 ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
.++.+ ..++ .++.++..|+.+|..++..
T Consensus 235 ~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 235 VCRRL-VELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp THHHH-HHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHH-HHHHCCCchhHHHHHHHHHHHHhhC
Confidence 67766 3444 4678899999999888753
No 20
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.58 E-value=0.28 Score=52.80 Aligned_cols=186 Identities=16% Similarity=0.101 Sum_probs=118.7
Q ss_pred CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchh
Q psy13179 68 SSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSF 147 (352)
Q Consensus 68 s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~f 147 (352)
+.+..+|+.|..-|.+.+++....++++....+-..+++.+. + .+..+++..+.++..++...-+..++.+
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~----d-----~~~~vR~~A~~~L~~l~~~~~~~~~~~i 87 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE----D-----KNGEVQNLAVKCLGPLVSKVKEYQVETI 87 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT----C-----SSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc----C-----CCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 568899999999999988776656665555555556666553 1 3566777788888888876544567888
Q ss_pred HHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHH
Q psy13179 148 IPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLET 226 (352)
Q Consensus 148 i~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~ 226 (352)
++.++..+..+ +..+..+...|..+.+.+....... . ......+.++..+...+....++.....++.+
T Consensus 88 ~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~-------~---~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 88 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS-------A---LAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C-------C---THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc-------c---hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88888887543 3445566777777776533210000 0 01122345666666666544567888889999
Q ss_pred HHhccccCcchh-hcccchHHHHHHhhcC--chhhHHHHHHHHHHHHhcc
Q psy13179 227 LLRFLNWIPLGY-IFETNLITTLIEKFLN--VPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 227 l~~~l~Wi~~~~-i~~~~ll~~l~~~~l~--~~~~~~~al~cL~ei~~~~ 273 (352)
+...+.-.+... -.-+.+++.+ ...+. ++.+|..|+.||..++...
T Consensus 158 l~~~~~~~~~~l~~~~~~ll~~l-~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 158 MADMLSRQGGLLVNFHPSILTCL-LPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHTCSSCTTTHHHHHHHH-GGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhHhHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 888764222100 0124566665 44443 4689999999999998654
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.55 E-value=1.5 Score=42.30 Aligned_cols=220 Identities=14% Similarity=0.095 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHHHHHHhc-CC----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKE-HP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 23 i~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
.+.+..++..+.+++.+.|..|-..|.++-. .+ +....+..+|..+.++.+|..|+.+|.+....
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~---- 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG---- 148 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC----
Confidence 3457888888888887788888888877733 22 35677777887665699999999999987752
Q ss_pred CCHHHHHHHH-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC-----cchhHHHHHHhccc--Chhhhh
Q psy13179 92 LPREQCDGIK-KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN-----WQSFIPDIVGASKT--NESLCQ 163 (352)
Q Consensus 92 l~~e~k~~ik-~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~-----Wp~fi~~l~~~~~~--~~~~~~ 163 (352)
+++.+..+. ...+..+...-.+ .+..++...+.++..|+... |.. -...++-+++.+.. +.....
T Consensus 149 -~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 149 -TSENTKVVIDHGAVPIFVKLLGS-----SSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred -CHHHHHHHHhCCcHHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 344444433 3455555554332 34567778888888887531 110 12467777877743 234556
Q ss_pred HHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcc
Q psy13179 164 NNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFE 241 (352)
Q Consensus 164 ~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~ 241 (352)
..+.+|..|+.. . ..... ... ..++..+..+|. +.++.+...++.++..+..-.+. ..+.+
T Consensus 222 ~a~~~L~~L~~~----~-~~~~~-------~~~----~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 284 (528)
T 4b8j_A 222 NATWTLSNFCRG----K-PQPSF-------EQT----RPALPALARLIH-SNDEEVLTDACWALSYLSDGTNDKIQAVIE 284 (528)
T ss_dssp HHHHHHHHHHCS----S-SCCCH-------HHH----TTHHHHHHHHTT-CCCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcC----C-CCCcH-------HHH----HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 667777776642 1 11111 011 223333344443 46788888899988876544321 24455
Q ss_pred cchHHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 242 TNLITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 242 ~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
.+.++.+ ..++ .++.++..|+.+|..++.
T Consensus 285 ~g~v~~L-v~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 285 AGVCPRL-VELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp TTCHHHH-HHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHH-HHHHcCCChhHHHHHHHHHHHHHc
Confidence 6677776 4555 356788999999988875
No 22
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.54 E-value=1.1 Score=39.11 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIV 105 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll 105 (352)
++.++..+.+++...|..|-..|.++. .|++...+...+. +.++.+|..|+..|...- . +++....+-..+.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~-----~-~~~~~~~l~~~L~ 96 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIK-----I-CKKCEDNVFNILN 96 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSC-----C-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-----c-ccccchHHHHHHH
Confidence 556666667777778999999998885 5778888888886 467899999998885521 1 1122222222222
Q ss_pred HHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHH-----hhcc
Q psy13179 106 GLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEE-----VFDF 179 (352)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eE-----v~~~ 179 (352)
+.+.+ ..++.++...+.+++.+...+ |...+..++.+...++.+. .........|..+..+ +...
T Consensus 97 ~~~~~--------d~~~~vr~~a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~ 167 (280)
T 1oyz_A 97 NMALN--------DKSACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINL 167 (280)
T ss_dssp HHHHH--------CSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHH
T ss_pred HHHhc--------CCCHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22222 235567788888888887543 3335677788877775443 3333444444333221 0000
Q ss_pred CCCcccHHHHHHHHHHHHH---hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCch
Q psy13179 180 SGGQLTQAKAKHLKDSMCL---QFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVP 256 (352)
Q Consensus 180 ~~~~l~~~r~~~lk~~l~~---~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~ 256 (352)
-.+.-...|..-+. ++.. .-+.++..+...+.. .++.+...+..+++.+- ++..++.+ ...+.++
T Consensus 168 l~d~~~~vr~~a~~-aL~~~~~~~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~---------~~~~~~~L-~~~l~d~ 235 (280)
T 1oyz_A 168 LKDPNGDVRNWAAF-AININKYDNSDIRDCFVEMLQD-KNEEVRIEAIIGLSYRK---------DKRVLSVL-CDELKKN 235 (280)
T ss_dssp HTCSSHHHHHHHHH-HHHHHTCCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTT---------CGGGHHHH-HHHHTSS
T ss_pred HcCCCHHHHHHHHH-HHHhhccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC---------CHhhHHHH-HHHhcCc
Confidence 00111122322211 2221 134455555555543 56778888888887642 44566665 4566777
Q ss_pred hhHHHHHHHHHHHH
Q psy13179 257 LFRNVTLKCLTEIA 270 (352)
Q Consensus 257 ~~~~~al~cL~ei~ 270 (352)
.+|..|+.+|..+.
T Consensus 236 ~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 236 TVYDDIIEAAGELG 249 (280)
T ss_dssp SCCHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhcC
Confidence 89999999888774
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.22 E-value=1.1 Score=38.33 Aligned_cols=218 Identities=14% Similarity=0.111 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHH-Hhc---------CCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTA-LKE---------HPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~-fk~---------~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
.++..+..+.+++.+.|..|-..|.+ +.. ..++......+|.+ .++.+|..|+.+|.+.... ++
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~-----~~ 86 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASG-----GN 86 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS-----CH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-----CH
Confidence 36677777777777777776666632 221 23555666677764 4589999999999987642 34
Q ss_pred HHHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC----CcchhHHHHHHhcccCh-hhhhHHHHH
Q psy13179 95 EQCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK----NWQSFIPDIVGASKTNE-SLCQNNMVI 168 (352)
Q Consensus 95 e~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~----~Wp~fi~~l~~~~~~~~-~~~~~~l~i 168 (352)
+.+..+.+ ..+..+...-.+ .++.++...+.++..+....-.. .=...++.+++.+..+. .....++..
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444433 356666654332 24566677777777775431000 01246777777776543 445566677
Q ss_pred HHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccchHH
Q psy13179 169 LKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNLIT 246 (352)
Q Consensus 169 L~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll~ 246 (352)
|..|+.. ..... ..+.+ ..++..+..+|. ..++.+...++.++..+...-+. ..+.+.+.++
T Consensus 162 L~~l~~~---------~~~~~----~~~~~--~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 225 (252)
T 4db8_A 162 LSNIASG---------GNEQI----QAVID--AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 225 (252)
T ss_dssp HHHHTTS---------CHHHH----HHHHH--TTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHcC---------ChHHH----HHHHH--CCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Confidence 7666531 11111 11111 112333334444 35788999999999988754331 2345556777
Q ss_pred HHHHhhc--CchhhHHHHHHHHHHHH
Q psy13179 247 TLIEKFL--NVPLFRNVTLKCLTEIA 270 (352)
Q Consensus 247 ~l~~~~l--~~~~~~~~al~cL~ei~ 270 (352)
.+ ..++ .++.++..|+.+|..++
T Consensus 226 ~L-~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 226 KL-EQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HH-HTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HH-HHHhCCCCHHHHHHHHHHHHHHh
Confidence 76 4555 46789999999987765
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.90 E-value=1.3 Score=43.70 Aligned_cols=212 Identities=13% Similarity=0.161 Sum_probs=114.1
Q ss_pred CChHhHHHHHHHHHHHhc----CCChHHHHHH-------HhccCCchHHHHHHHHHHHHHHhhccCCCC----------H
Q psy13179 36 GMGVEQKAAQEVLTALKE----HPDAWTRVDT-------ILEYSSNQQTKFYALQILEQVIKTRWKALP----------R 94 (352)
Q Consensus 36 ~~~~~r~~A~~~L~~fk~----~p~~w~~~~~-------iL~~s~~~~vrffal~~L~~~I~~~W~~l~----------~ 94 (352)
+++..+-+|-+.+..+.. +|+....+.. .|. +.++++|+.|+..|...+.++=..+. .
T Consensus 251 ~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~ 329 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYN 329 (591)
T ss_dssp STTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTT
T ss_pred CChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccC
Confidence 355567777777777653 4555543221 122 36889999999999998876433221 2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchh-----------hhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhh
Q psy13179 95 EQCDGIKKYIVGLIIKTSSTPETL-----------EREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLC 162 (352)
Q Consensus 95 e~k~~ik~~ll~~l~~~~~~~~~~-----------~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~ 162 (352)
+. ..+|..-++.+....+..+.. ..+..++..++..+..++.+ ||......++-+++.+.... ...
T Consensus 330 d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~-~~~~~~~~v~~Ll~ll~~~~~~v~ 407 (591)
T 2vgl_B 330 DP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK-VEQSAERCVSTLLDLIQTKVNYVV 407 (591)
T ss_dssp SC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred Ch-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHcccchHHH
Confidence 23 667777777666543321000 12344555566666666655 44333344555555543322 111
Q ss_pred hHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhccc
Q psy13179 163 QNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFET 242 (352)
Q Consensus 163 ~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~ 242 (352)
......++.+... +... | ..++..+...++....+.+...++-+++.|..+++- .+
T Consensus 408 ~e~i~~l~~ii~~---~p~~-----~------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~----~~ 463 (591)
T 2vgl_B 408 QEAIVVIRDIFRK---YPNK-----Y------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN----AD 463 (591)
T ss_dssp HHHHHHHHHHHHH---SCSS-----C------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT----HH
T ss_pred HHHHHHHHHHHHH---Ccch-----H------------HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC----HH
Confidence 1122222222211 1000 0 112222233344445677888888899999888753 12
Q ss_pred chHHHHHHhhc-CchhhHHHHHHHHHHHHhccC
Q psy13179 243 NLITTLIEKFL-NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 243 ~ll~~l~~~~l-~~~~~~~~al~cL~ei~~~~~ 274 (352)
+.+..+...+. .++.+|..++.++.-+..+..
T Consensus 464 ~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p 496 (591)
T 2vgl_B 464 ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP 496 (591)
T ss_dssp HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 45555433333 367888999999988887653
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.70 E-value=1.8 Score=37.01 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=101.2
Q ss_pred CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcC---CCc
Q psy13179 68 SSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWP---KNW 144 (352)
Q Consensus 68 s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P---~~W 144 (352)
+.+-..|.-|+..|...+...=.... .....+-..+...+.. + .+..++...+.++..+++.--+ ..+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~-~~~~~i~~~L~~~l~k---d-----~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLEN-GEYGALVSALKKVITK---D-----SNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCC-CCCHHHHHHHHHHHHH---C-----SCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCC-CCHHHHHHHHHHHhcc---C-----CCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56777888888888887775212222 2223333334443321 1 2455667778888888865433 345
Q ss_pred chhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHH
Q psy13179 145 QSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGAT 223 (352)
Q Consensus 145 p~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~ 223 (352)
+.+++-++..+... ...++.....|..+.+. .+ ++.++..+...+. +.++.+...+
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--------~~--------------~~~ll~~l~~~l~-~~~~~vr~~~ 153 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYAS--------TS--------------LEAQQESIVESLS-NKNPSVKSET 153 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--------SC--------------HHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--------CC--------------HHHHHHHHHHHHc-CCChHHHHHH
Confidence 66777777776543 34445555566555431 01 1234444444454 3578889999
Q ss_pred HHHHHhccccCcchhhc---ccchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 224 LETLLRFLNWIPLGYIF---ETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 224 L~~l~~~l~Wi~~~~i~---~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+..+...+.-......+ -+.+++.+ ...+ .++.+|..|.+|+..++..
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l~~l~p~l-~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLLKLLTTSL-VKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHHHHHHHHH-HHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99998865443212111 13577776 5666 4678999999999998754
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.64 E-value=2.8 Score=38.95 Aligned_cols=219 Identities=13% Similarity=0.084 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcC-ChHhHHHHHHHHHHHhcC----------CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 25 LLDNIVECMYTG-MGVEQKAAQEVLTALKEH----------PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 25 ~L~~~v~~~~~~-~~~~r~~A~~~L~~fk~~----------p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
.+..+++.+.++ +...|..|-..|..+-.. +++......+|. +.++.+|..|+.+|.+.... +
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~-----~ 138 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGD-----S 138 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTT-----C
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccC-----C
Confidence 455566666666 556788888888876542 456666666675 46889999999999987753 3
Q ss_pred HHHHHHH-HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC----CcchhHHHHHHhcccCh-hhhhHHHH
Q psy13179 94 REQCDGI-KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK----NWQSFIPDIVGASKTNE-SLCQNNMV 167 (352)
Q Consensus 94 ~e~k~~i-k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~----~Wp~fi~~l~~~~~~~~-~~~~~~l~ 167 (352)
++.+..+ +..++..+.....+ ..+..++...+.++..+....-|. .-...++-+++.+..++ ......+.
T Consensus 139 ~~~~~~~~~~~~i~~L~~~l~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 139 TMCRDYVLDCNILPPLLQLFSK----QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTS----CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcC----CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 3444433 23445555554321 134667788888899888654232 12568888888886543 34455566
Q ss_pred HHHhHHHHhhccCCCcccHHHHHHHHHHHH-HhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccch
Q psy13179 168 ILKLLSEEVFDFSGGQLTQAKAKHLKDSMC-LQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNL 244 (352)
Q Consensus 168 iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~-~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~l 244 (352)
.|..+++. ...+. +.... ..++.++. +|. +.++.+...++.++..+..--+- ..+.+.+.
T Consensus 215 ~L~~l~~~---------~~~~~---~~~~~~~~i~~L~~----ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 277 (450)
T 2jdq_A 215 ALSYLSDG---------PNDKI---QAVIDAGVCRRLVE----LLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA 277 (450)
T ss_dssp HHHHHTSS---------SHHHH---HHHHHTTTHHHHHH----HTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH
T ss_pred HHHHHHCC---------CcHHH---HHHHHcCcHHHHHH----HHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCcc
Confidence 66665531 01111 11111 12344443 443 46788889999999887654321 22445567
Q ss_pred HHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 245 ITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 245 l~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
++.+ ..++ .++.+|..|+.+|..++.
T Consensus 278 l~~L-~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 278 LQSL-LHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHH-HHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHcCCCHHHHHHHHHHHHHHHc
Confidence 7776 4555 356899999999998875
No 27
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.33 E-value=0.93 Score=46.70 Aligned_cols=176 Identities=12% Similarity=0.091 Sum_probs=95.3
Q ss_pred cCChHhHHHHHHHHHHHhc--CCChHHHHHHHh---ccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Q psy13179 35 TGMGVEQKAAQEVLTALKE--HPDAWTRVDTIL---EYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLII 109 (352)
Q Consensus 35 ~~~~~~r~~A~~~L~~fk~--~p~~w~~~~~iL---~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~ 109 (352)
++++..|..|-+.+..+-+ .|+.|.-....| -.+.++.+|.-|+.+|.......=..+..+.-...-+.++..+.
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~ 180 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 180 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH
Confidence 4455678877777776543 356776544433 13557889999999998877542111000000011233455554
Q ss_pred HhcCCcchhhhhHHHHHHHHHHHHHHHHhH---cCCCcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCccc
Q psy13179 110 KTSSTPETLEREKMYLNKLNMILVQVLKRE---WPKNWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLT 185 (352)
Q Consensus 110 ~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~---~P~~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~ 185 (352)
+...+ .+..++.....++..++... .-..++.+++.++...+.+ +......+.+|..+.+...
T Consensus 181 ~~l~~-----~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~-------- 247 (852)
T 4fdd_A 181 QFFKH-----SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM-------- 247 (852)
T ss_dssp TTTTC-----SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH--------
T ss_pred HHhcC-----CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH--------
Confidence 43322 34556666666776655421 1124567777777766543 3455566677766654211
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccc
Q psy13179 186 QAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLN 232 (352)
Q Consensus 186 ~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~ 232 (352)
+.+...++.++..+..++.. .++.+...+++.+..+.+
T Consensus 248 --------~~~~~~l~~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 248 --------DRLLPHMHNIVEYMLQRTQD-QDENVALEACEFWLTLAE 285 (852)
T ss_dssp --------HHHGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTT
T ss_pred --------HHHHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHhc
Confidence 11333445566666666543 456666777766665543
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.13 E-value=2.4 Score=40.89 Aligned_cols=221 Identities=13% Similarity=0.080 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHhcC---C--------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEH---P--------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~---p--------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
.+..+++.+.+++.+.|..|-..|.++-.. | +....+..+|..+.++.+|+.|+.+|.+.... +
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~-----~ 162 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG-----T 162 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-----C
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-----C
Confidence 366777777777777888888888887332 2 35566666676555889999999999987652 2
Q ss_pred HHHHHHHH-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhH--cCC--CcchhHHHHHHhcccC-hhhhhHHHH
Q psy13179 94 REQCDGIK-KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKRE--WPK--NWQSFIPDIVGASKTN-ESLCQNNMV 167 (352)
Q Consensus 94 ~e~k~~ik-~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~--~P~--~Wp~fi~~l~~~~~~~-~~~~~~~l~ 167 (352)
++.+..+. ...+..+...-. ..++.++...+.++..|+... ..+ .=...++-++..+..+ .......+.
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~-----~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 237 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLY-----TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHH
Confidence 33333332 222333333211 134567777888888887531 100 0124677777777653 344556667
Q ss_pred HHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccchH
Q psy13179 168 ILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETNLI 245 (352)
Q Consensus 168 iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ll 245 (352)
.|..|+.. ....... ......++.+ ..+|. +.++.+...++.++..+...-+ ...+.+.+.+
T Consensus 238 ~L~~L~~~----~~~~~~~-------~~~~~~l~~L----~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 301 (530)
T 1wa5_B 238 TLSNLCRG----KKPQPDW-------SVVSQALPTL----AKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301 (530)
T ss_dssp HHHHHHCC----SSSCCCH-------HHHGGGHHHH----HHHTT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred HHHHHhCC----CCCCCcH-------HHHHhHHHHH----HHHHc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH
Confidence 77766632 1111111 0112223333 34443 3567888888888887765433 2334455677
Q ss_pred HHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 246 TTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 246 ~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+.+ ..++ .++.++..|+.+|..++..
T Consensus 302 ~~L-v~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 302 KRL-VELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp HHH-HHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-HHHHCCCChhhHHHHHHHHHHHHcC
Confidence 776 4455 4577899999999888753
No 29
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.98 E-value=6 Score=40.16 Aligned_cols=222 Identities=6% Similarity=-0.019 Sum_probs=120.5
Q ss_pred HhcCChHhHHHHHHHHHHHhcC-C---------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhc------------cC
Q psy13179 33 MYTGMGVEQKAAQEVLTALKEH-P---------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTR------------WK 90 (352)
Q Consensus 33 ~~~~~~~~r~~A~~~L~~fk~~-p---------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~------------W~ 90 (352)
+.+++.+.|+.|-+.|..+-+. | .-|..+...+. +.++.+|..|+..+...+... |.
T Consensus 233 ~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 311 (861)
T 2bpt_A 233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK-SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSP 311 (861)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 3345566788888777766542 2 22333333332 457889999998888776642 22
Q ss_pred CCCHH-HHHHHHHHHHHHHHHhcCCcc--hhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHH
Q psy13179 91 ALPRE-QCDGIKKYIVGLIIKTSSTPE--TLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNM 166 (352)
Q Consensus 91 ~l~~e-~k~~ik~~ll~~l~~~~~~~~--~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l 166 (352)
..... .+..+ ..++..+...-.+.. ..+.+..++...+.++..++...-....|.+++.+.+.+++.. ...+.++
T Consensus 312 ~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~ 390 (861)
T 2bpt_A 312 LQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp CCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHH
Confidence 11111 12222 334444433211100 0011234556667777777765323345666666666664432 3445566
Q ss_pred HHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcch---hhcccc
Q psy13179 167 VILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLG---YIFETN 243 (352)
Q Consensus 167 ~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~---~i~~~~ 243 (352)
..|..+.+. ..+ +.+...++.++..+...+. ..++.+...++.+++.+..|++.. .-+-+.
T Consensus 391 ~~l~~i~~~--------~~~-------~~~~~~l~~il~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 391 MAFGSIMDG--------PDK-------VQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHHHTSSS--------SCH-------HHHHHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHHHHHcC--------CCH-------HHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 666555421 111 1123334455555555554 357888999999999999887532 112235
Q ss_pred hHHHHHHhhcCchhhHHHHHHHHHHHHhc
Q psy13179 244 LITTLIEKFLNVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 244 ll~~l~~~~l~~~~~~~~al~cL~ei~~~ 272 (352)
+++.++..+-+++.+|..|+.+|..++..
T Consensus 455 ~l~~l~~~l~~~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 455 VVQACLIGLQDHPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHh
Confidence 66665333334478889999999888764
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.68 E-value=4.4 Score=38.85 Aligned_cols=220 Identities=10% Similarity=0.012 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCC----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e 95 (352)
+..++..+.+++...|..|-..|.++-... ++...+..+|..+.++.++..++.+|.+..... ......
T Consensus 162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~ 240 (528)
T 4b8j_A 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFE 240 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHH
Confidence 344444444555566777777776665432 244455555655667888888888888876643 221212
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC------cchhHHHHHHhcccCh-hhhhHHHHH
Q psy13179 96 QCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN------WQSFIPDIVGASKTNE-SLCQNNMVI 168 (352)
Q Consensus 96 ~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~------Wp~fi~~l~~~~~~~~-~~~~~~l~i 168 (352)
. ...++..+.....+ .++.++...+.++..+... +.. -...++-++..+..+. ......+.+
T Consensus 241 ~----~~~~l~~L~~lL~~-----~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 241 Q----TRPALPALARLIHS-----NDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp H----HTTHHHHHHHHTTC-----CCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence 1 22333333333221 2455666777777766632 111 1245667777776543 344556666
Q ss_pred HHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccchHH
Q psy13179 169 LKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETNLIT 246 (352)
Q Consensus 169 L~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ll~ 246 (352)
|..|+.. . ...+ ...+. ..++..+..+|....++.+.+.+..++..+...-+ ...+.+.++++
T Consensus 310 L~nl~~~-----~---~~~~----~~~~~---~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~ 374 (528)
T 4b8j_A 310 VGNIVTG-----D---DAQT----QCIID---HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 374 (528)
T ss_dssp HHHHTTS-----C---HHHH----HHHHT---TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHH
T ss_pred HHHHHcC-----C---HHHH----HHHHH---hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
Confidence 6665421 0 1111 11111 22344455556544378888888888887764322 12344556676
Q ss_pred HHHHhhc--CchhhHHHHHHHHHHHHhcc
Q psy13179 247 TLIEKFL--NVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 247 ~l~~~~l--~~~~~~~~al~cL~ei~~~~ 273 (352)
.| ..++ .++.++..|+.+|..++..+
T Consensus 375 ~L-~~lL~~~~~~v~~~a~~aL~nl~~~~ 402 (528)
T 4b8j_A 375 PL-VNLLQTAEFDIKKEAAWAISNATSGG 402 (528)
T ss_dssp HH-HHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred HH-HHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 65 3444 56789999999999998763
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.47 E-value=2.6 Score=34.72 Aligned_cols=188 Identities=13% Similarity=0.110 Sum_probs=110.8
Q ss_pred CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHH
Q psy13179 55 PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK-KYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133 (352)
Q Consensus 55 p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik-~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~ 133 (352)
++.+.....+|. +.++.+|.-|+..|.+.... +++.+..+. ...+..+...-.+ .++.++...+.++.
T Consensus 11 ~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~ 79 (210)
T 4db6_A 11 GSELPQMVQQLN-SPDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALS 79 (210)
T ss_dssp --CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHH
T ss_pred cchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHH
Confidence 456667777775 56788999999999887642 344443333 3445555554322 24556677777777
Q ss_pred HHHHhHcCC-----CcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHH
Q psy13179 134 QVLKREWPK-----NWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLC 207 (352)
Q Consensus 134 ~I~~~~~P~-----~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~ 207 (352)
.++... |+ .....++-+++.+.++. ......+..|..++.. ..... +..+.. .++..+
T Consensus 80 ~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---------~~~~~---~~~~~~---~~i~~L 143 (210)
T 4db6_A 80 NIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---------GNEQI---QAVIDA---GALPAL 143 (210)
T ss_dssp HHTTSC-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---------CHHHH---HHHHHT---THHHHH
T ss_pred HHhcCC-cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC---------CHHHH---HHHHHc---CcHHHH
Confidence 776421 11 12356777888876543 4555666777766531 11111 111111 233334
Q ss_pred HHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 208 QFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 208 ~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
..++.. .++.+...++.++..+...-+. ..+.+.+.++.+ ..++ .++.++..|+.+|..+.+
T Consensus 144 ~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 144 VQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL-EQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH-HHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHH-HHHHhCCCHHHHHHHHHHHHHHhc
Confidence 444443 5788999999999888765332 234455677776 4445 467899999999987753
No 32
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.87 E-value=9 Score=38.93 Aligned_cols=220 Identities=11% Similarity=0.049 Sum_probs=114.4
Q ss_pred cCChHhHHHHHHHHHHHhcC-C---------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhcc---------------
Q psy13179 35 TGMGVEQKAAQEVLTALKEH-P---------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW--------------- 89 (352)
Q Consensus 35 ~~~~~~r~~A~~~L~~fk~~-p---------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W--------------- 89 (352)
+++.+.|..|-+.|..+-+. | ..+..+...+ .+.++.+|..|+..+.......-
T Consensus 228 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 306 (876)
T 1qgr_A 228 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCC
Confidence 34555788888877775542 2 2333333333 24567888888877777665321
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHhcCCc-c-hhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccC-hhhhhH
Q psy13179 90 K--ALPREQCDGIKKYIVGLIIKTSSTP-E-TLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTN-ESLCQN 164 (352)
Q Consensus 90 ~--~l~~e~k~~ik~~ll~~l~~~~~~~-~-~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~-~~~~~~ 164 (352)
. ....-.+..++ .++..+.+.-... . ....+..++...+.++..++...-...-+.+++.+.+.++.. ....+.
T Consensus 307 ~~~~~~~~~~~~~~-~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~ 385 (876)
T 1qgr_A 307 PEHTSKFYAKGALQ-YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 385 (876)
T ss_dssp CSSCCCCHHHHHHH-HHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ccchhHHHHHHHHH-HHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHH
Confidence 0 00000111122 2233332221100 0 001223455555666666665532223344555555554432 234455
Q ss_pred HHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchh---hcc
Q psy13179 165 NMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGY---IFE 241 (352)
Q Consensus 165 ~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~---i~~ 241 (352)
++..|..+.+. ..+ +.+....+.++..+...+. .+++.+...++.+++.+..|.+... -.-
T Consensus 386 a~~~l~~i~~~--------~~~-------~~~~~~~~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 386 AVMAFGCILEG--------PEP-------SQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHHHHHTSSS--------SCH-------HHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHHHHHHHcC--------CCH-------HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 66666555421 111 1122334556666666664 3568899999999999999976421 112
Q ss_pred cchHHHHHHhhcCchhhHHHHHHHHHHHHhc
Q psy13179 242 TNLITTLIEKFLNVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 242 ~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~ 272 (352)
+.+++.++..+-+++.++..|+.+|..++..
T Consensus 450 ~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 450 APLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3466665333334578889999999888865
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.58 E-value=7 Score=37.50 Aligned_cols=220 Identities=9% Similarity=0.032 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCC----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e 95 (352)
+..++..+.+++...|..|-..|..+-... ++...+..++.. .++.++..|+.+|.+.....=......
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~ 253 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWS 253 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHH
Confidence 344445555566667888888887776542 455556666654 678888889999988775431222222
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-----CcchhHHHHHHhcccCh-hhhhHHHHHH
Q psy13179 96 QCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-----NWQSFIPDIVGASKTNE-SLCQNNMVIL 169 (352)
Q Consensus 96 ~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-----~Wp~fi~~l~~~~~~~~-~~~~~~l~iL 169 (352)
+...++..+.....+ .+..++...+.++..+.... |+ .....++.++..+..+. ......+.+|
T Consensus 254 ----~~~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 254 ----VVSQALPTLAKLIYS-----MDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp ----HHGGGHHHHHHHTTC-----CCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ----HHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCCC-HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 223334444443222 24556677777777776431 11 11256677777775432 3445566666
Q ss_pred HhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccchHHH
Q psy13179 170 KLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETNLITT 247 (352)
Q Consensus 170 ~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ll~~ 247 (352)
..++.. ..... +..+.. .++..+..+|.. .++.+...++.++..+...-+ ...+++.+.++.
T Consensus 324 ~~l~~~---------~~~~~---~~~~~~---~~l~~L~~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~ 387 (530)
T 1wa5_B 324 GNIVTG---------NDLQT---QVVINA---GVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 387 (530)
T ss_dssp HHHTTS---------CHHHH---HHHHHT---THHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHH
T ss_pred HHHHcC---------CHHHH---HHHHHc---chHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 655421 01111 111111 244444555554 468889999999988765332 123445566766
Q ss_pred HHHhhc--CchhhHHHHHHHHHHHHhcc
Q psy13179 248 LIEKFL--NVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 248 l~~~~l--~~~~~~~~al~cL~ei~~~~ 273 (352)
+ ..++ .++.++..|+.+|..++..+
T Consensus 388 L-~~lL~~~~~~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 388 L-VKLLEVAEYKTKKEACWAISNASSGG 414 (530)
T ss_dssp H-HHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred H-HHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 5 3444 56789999999999998754
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.49 E-value=2.9 Score=35.54 Aligned_cols=188 Identities=14% Similarity=0.140 Sum_probs=114.5
Q ss_pred CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHH-HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHH
Q psy13179 55 PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQC-DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133 (352)
Q Consensus 55 p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k-~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~ 133 (352)
+..|......|. +.++.++..|+..|.+.+.. +++.+ .-++...+..+...-.+ .++.++...+.++.
T Consensus 11 ~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~-----~~~~~~~~~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~ 79 (252)
T 4db8_A 11 GSELPQMTQQLN-SDDMQEQLSATRKFSQILSD-----GNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALS 79 (252)
T ss_dssp TCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHHHHGGGC-----SCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcC-----CCchHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHH
Confidence 456777777775 56788999999999887775 22333 33334455555554322 23556677777887
Q ss_pred HHHHhHcCCC-----cchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHH
Q psy13179 134 QVLKREWPKN-----WQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLC 207 (352)
Q Consensus 134 ~I~~~~~P~~-----Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~ 207 (352)
.++... |+. -...++-+++.++++ +......+..|..|+.. ...+. +.+.. ..++..+
T Consensus 80 ~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---------~~~~~----~~~~~--~~~i~~L 143 (252)
T 4db8_A 80 NIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---------GNEQI----QAVID--AGALPAL 143 (252)
T ss_dssp HHTTSC-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---------CHHHH----HHHHH--TTHHHHH
T ss_pred HHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---------CchHH----HHHHH--CCCHHHH
Confidence 777531 111 134677788877654 34556677777776531 11121 11111 1133333
Q ss_pred HHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 208 QFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 208 ~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
..+|. ..++.+...++.++..+...-+. ..+.+.+.++.+ ..++ .++.++..|+.+|..++.
T Consensus 144 ~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 144 VQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH-HHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH-HHHHCCCCHHHHHHHHHHHHHHhc
Confidence 44444 35788899999999887654332 234556777776 4555 467899999999999984
No 35
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.34 E-value=4 Score=33.43 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=111.7
Q ss_pred ccCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHH
Q psy13179 19 QKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98 (352)
Q Consensus 19 ~~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~ 98 (352)
.+++......+++.+.+++...|..|-..|.++.. +++...+...|. +.++.+|..|+..|...- +++..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~-------~~~~~- 78 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK-DEDAWVRRAAADALGQIG-------DERAV- 78 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC-------CGGGH-
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhC-------CHHHH-
Confidence 45678889999999999999999999999988764 577777778785 568899999998887641 12222
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhh
Q psy13179 99 GIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVF 177 (352)
Q Consensus 99 ~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~ 177 (352)
..+...+ .+ .++.++...+.++..+. -+..++.+...+..+. .........|..+..
T Consensus 79 ---~~L~~~l----~d-----~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 79 ---EPLIKAL----KD-----EDGWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ---HHHHHHT----TC-----SSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHH----cC-----CCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2233322 22 34556666666666543 2346666666664332 233333333333211
Q ss_pred ccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--Cc
Q psy13179 178 DFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NV 255 (352)
Q Consensus 178 ~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~ 255 (352)
+..+..+...+. ..++.+...+..++..+ -.+..++.+ ..++ .+
T Consensus 137 -----------------------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~---------~~~~~~~~L-~~~l~d~~ 182 (201)
T 3ltj_A 137 -----------------------ERAVEPLIKALK-DEDGWVRQSAADALGEI---------GGERVRAAM-EKLAETGT 182 (201)
T ss_dssp -----------------------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHH---------CSHHHHHHH-HHHHHHCC
T ss_pred -----------------------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHh---------CchhHHHHH-HHHHhCCC
Confidence 112222233333 34667777787777765 123344443 3333 56
Q ss_pred hhhHHHHHHHHHHH
Q psy13179 256 PLFRNVTLKCLTEI 269 (352)
Q Consensus 256 ~~~~~~al~cL~ei 269 (352)
+.+|..|.+.|..+
T Consensus 183 ~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 183 GFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887654
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.01 E-value=12 Score=38.18 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHhc----------CCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTALKE----------HPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~fk~----------~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
.+..++..+.+++...|..|-..|..+-. .+++.......|.++.++.+|..|+.+|.+.... .
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~------~ 224 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH------R 224 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS------H
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC------c
Confidence 34455555556667778888888888765 3456666677777667899999999999994331 2
Q ss_pred HHHHH-HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc-----chhHHHHHHhcccCh-hhhhHHHH
Q psy13179 95 EQCDG-IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW-----QSFIPDIVGASKTNE-SLCQNNMV 167 (352)
Q Consensus 95 e~k~~-ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W-----p~fi~~l~~~~~~~~-~~~~~~l~ 167 (352)
+.+.. .+...+..+.....+ .++.++...+.+|..|.... +... ...++.++..+..+. ......+.
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~-----~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~ 298 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGS-----PVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 22332 233455555554332 24556677788888887652 2221 356777888886543 33344445
Q ss_pred HHHhHH
Q psy13179 168 ILKLLS 173 (352)
Q Consensus 168 iL~~L~ 173 (352)
+|..++
T Consensus 299 aL~~La 304 (780)
T 2z6g_A 299 CLQILA 304 (780)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
No 37
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.66 E-value=9.6 Score=36.42 Aligned_cols=289 Identities=15% Similarity=0.171 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHH-hcCCChHHHHHH-H--hccCCchHHHHHHHHHHHHHHhhccCCCCHHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTAL-KEHPDAWTRVDT-I--LEYSSNQQTKFYALQILEQVIKTRWKALPREQC 97 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~f-k~~p~~w~~~~~-i--L~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k 97 (352)
+.+....++.+.- ++...++-|-+++-+| +.-|+--..+.. + |-...+..+|-.|..-|-...+. +..
T Consensus 27 ~~~~y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-------~~i 98 (507)
T 3u0r_A 27 HKDAYQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-------ENL 98 (507)
T ss_dssp GHHHHHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-------TCH
T ss_pred cHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-------hhh
Confidence 4555555555332 3455555555566654 444654333333 2 22345777888775555444332 223
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhh
Q psy13179 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVF 177 (352)
Q Consensus 98 ~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~ 177 (352)
..+-..|.+++.. .++.=++.+-..+..+++.|=-..-..++.++.+ +.+..++ ++|+.|.+-+.
T Consensus 99 ~kiaDvL~QlLqt---------dd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~---~~e~~Re---r~lkFi~~kl~ 163 (507)
T 3u0r_A 99 PRVADILTQLLQT---------DDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQ---GEDIVRE---RAIKFLSTKLK 163 (507)
T ss_dssp HHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCHHHHH---HHHHHHHHHGG
T ss_pred hhHHHHHHHHHhc---------cchHHHHHHHHHHHHHHhcChHHHHHHHHHHHcc---cchHHHH---HHHHHHHHHHh
Confidence 3333444444431 1223334555566677776522223345555555 2233333 45666666666
Q ss_pred ccCCCcccHHHH----HHHHHHHHHhHHHHHHHHHHHHhc----------------------------CCChHHHHHHHH
Q psy13179 178 DFSGGQLTQAKA----KHLKDSMCLQFSQIFTLCQFVLDN----------------------------SSNASLVGATLE 225 (352)
Q Consensus 178 ~~~~~~l~~~r~----~~lk~~l~~~~~~i~~l~~~iL~~----------------------------~~~~~l~~~~L~ 225 (352)
......++.+-. ..++..+..-...=|.+++.+|.. ..+++.+...+.
T Consensus 164 ~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~ 243 (507)
T 3u0r_A 164 TLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQ 243 (507)
T ss_dssp GSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHH
T ss_pred hcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHH
Confidence 655444544332 223333321112223444444421 135677777777
Q ss_pred HHHhccccCcchhhcccchHHHHHHhhcC------c----hhhHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHH
Q psy13179 226 TLLRFLNWIPLGYIFETNLITTLIEKFLN------V----PLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQ 295 (352)
Q Consensus 226 ~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~------~----~~~~~~al~cL~ei~~~~~~~~~~~~~~~~~f~~~l~~l~ 295 (352)
|+..=+....-+ +-.+.++..++.+.+. . ++.+..-+.++.|+..-....+.-.+.+..+|+.+ .
T Consensus 244 C~~~ALP~FS~~-v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L----~ 318 (507)
T 3u0r_A 244 CTRQAVPLFSKN-VHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL----L 318 (507)
T ss_dssp HHHHHGGGCBTT-BCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH----H
T ss_pred HHHHHHHHhccC-CChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH----H
Confidence 777755444322 2345677777655552 1 13688899999999876654455556666666654 4
Q ss_pred hcCCCCccHHHHh----ccCCcchHHHHHHHHHHHHHHHHHhhh-hhc
Q psy13179 296 MMFPMDINIKQAY----AMGKDTEQNFIQNLAMFLCTFLKEHGS-LIE 338 (352)
Q Consensus 296 ~~~p~~~~~~~~~----~~~~~~~~~f~~~l~~~l~~f~~~~~~-~le 338 (352)
++.|.-..-.... ...+..+-.|++++.-.++..+.++-. +.|
T Consensus 319 ~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l~e 366 (507)
T 3u0r_A 319 EYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFLTA 366 (507)
T ss_dssp TTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred HHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhhcc
Confidence 4555432111101 112334567999888888887777644 555
No 38
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=91.50 E-value=5.6 Score=33.39 Aligned_cols=184 Identities=11% Similarity=0.103 Sum_probs=110.3
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHH-HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHH
Q psy13179 59 TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDG-IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLK 137 (352)
Q Consensus 59 ~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~-ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~ 137 (352)
......|.+ .++.+|..|+..|.+.... +++.+.. ++...+..+...-.+ .+..++...+.++..+..
T Consensus 5 ~~L~~~L~~-~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 5 EKLVKLLTS-TDSETQKEAARDLAEIASG-----PASAIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALANIAS 73 (252)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcC-----CcHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHc
Confidence 445556654 4589999999999988764 2233333 334456666655332 245667778888887775
Q ss_pred hHcCCCc-----chhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy13179 138 REWPKNW-----QSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVL 211 (352)
Q Consensus 138 ~~~P~~W-----p~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL 211 (352)
.. |+.- ...++.++..++++ +......+.+|..|+.. . ...+ ..+.+. ..+..+..++
T Consensus 74 ~~-~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~----~~~~-----~~~~~~--~~i~~L~~~l 137 (252)
T 4hxt_A 74 GP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----P----DEAI-----KAIVDA--GGVEVLVKLL 137 (252)
T ss_dssp SC-HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS----C----HHHH-----HHHHHT--THHHHHHHHT
T ss_pred CC-hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----C----HHHH-----HHHHHC--CCHHHHHHHH
Confidence 41 1111 14677777777654 34556667777776531 0 1111 112211 1233333444
Q ss_pred hcCCChHHHHHHHHHHHhccccCcc--hhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 212 DNSSNASLVGATLETLLRFLNWIPL--GYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 212 ~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
. ..++.+...++.++..+..--+. ..+.+.+.++.+ ..++ .++.++..|+.+|..++.
T Consensus 138 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 138 T-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL-VKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp T-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH-HHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred c-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHH-HHHHCCCCHHHHHHHHHHHHHHHc
Confidence 4 35688999999999887654332 244556677776 4555 457899999999999986
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=89.76 E-value=14 Score=35.28 Aligned_cols=219 Identities=11% Similarity=0.079 Sum_probs=125.9
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhc---CC--------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKE---HP--------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~---~p--------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
++.+|+.+++.+.+.|.+|-+.+.++-. .| ++...+..+|.++.++.+++.|+.+|.+... -++
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias-----~~~ 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-----GTS 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHT-----SCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc-----CCH
Confidence 7888999999888877777777776532 22 2456677788878889999999999999764 255
Q ss_pred HHHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC-----cchhHHHHHHhcccChhh------h
Q psy13179 95 EQCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN-----WQSFIPDIVGASKTNESL------C 162 (352)
Q Consensus 95 e~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~-----Wp~fi~~l~~~~~~~~~~------~ 162 (352)
+.+..+.+ -.+..+...-.+ ++..++...+.+|..|+... |.. =...++-++..+...... .
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s-----~~~~v~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~ 207 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLAS-----PHAHISEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccchhhhHHHH
Confidence 55554443 355555554332 34567788888888887531 110 113445555655433211 1
Q ss_pred hHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhc
Q psy13179 163 QNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIF 240 (352)
Q Consensus 163 ~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~ 240 (352)
.+....|..++. .......... . ..++..+..+|. +.++++...++.++.....--+ ...+.
T Consensus 208 ~~a~~~L~nl~~----~~~~~~~~~~-------~----~~~lp~L~~LL~-~~~~~v~~~A~~aL~~L~~~~~~~~~~i~ 271 (510)
T 3ul1_B 208 RNLTWTLSNLCR----NKNPAPPLDA-------V----EQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVV 271 (510)
T ss_dssp HHHHHHHHHHHC----CCSSCCCHHH-------H----HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHhh----cccchhHHHH-------H----HhHHHHHHHHHh-cCCHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence 122223332221 1111001100 1 123344444443 4677888888888866543321 12344
Q ss_pred ccchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 241 ETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 241 ~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+...++.+ ..++ .++.++..++.+|..++..
T Consensus 272 ~~g~i~~L-v~lL~~~~~~v~~~al~aL~nl~~~ 304 (510)
T 3ul1_B 272 KKGVVPQL-VKLLGATELPIVTPALRAIGNIVTG 304 (510)
T ss_dssp TTTCHHHH-HHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred hcccchhh-hhhhcCCChhhhhHHHHHHHHhhcC
Confidence 55666665 3444 4678889999999888643
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.61 E-value=23 Score=33.93 Aligned_cols=220 Identities=12% Similarity=0.086 Sum_probs=123.6
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHHHhc---CC--------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTALKE---HP--------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~fk~---~p--------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
.++.+++.+++++.+.+.+|-+.+.++-. .| +....+..+|..+.++.+++.|+.+|.+.... +
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~-----~ 151 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----T 151 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-----C
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-----C
Confidence 47888888888888877777777766532 22 23445666787788899999999999997652 4
Q ss_pred HHHH-HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc-----chhHHHHHHhcccChh--h----
Q psy13179 94 REQC-DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW-----QSFIPDIVGASKTNES--L---- 161 (352)
Q Consensus 94 ~e~k-~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W-----p~fi~~l~~~~~~~~~--~---- 161 (352)
++.+ .-+..-.+..+.....+ .+..++...+.+|..|+... |+.- ...++-++..+..... .
T Consensus 152 ~~~~~~vv~~Gaip~Lv~LL~s-----~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~ 225 (529)
T 3tpo_A 152 SEQTKAVVDGGAIPAFISLLAS-----PHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 225 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccchhHhHHHH
Confidence 4443 33444456666555332 34556678888888887531 1100 1234555666543321 1
Q ss_pred hhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhh
Q psy13179 162 CQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYI 239 (352)
Q Consensus 162 ~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i 239 (352)
..+....|..++. .......... . ..++..+..++. +.++++...++.++......-+ ...+
T Consensus 226 ~~~a~~~L~nl~~----~~~~~~~~~~-------~----~~~lp~L~~LL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~v 289 (529)
T 3tpo_A 226 LRNLTWTLSNLCR----NKNPAPPLDA-------V----EQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMV 289 (529)
T ss_dssp HHHHHHHHHHHHC----CCTTCCCHHH-------H----HHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHh----cccchhhHHH-------H----hhHHHHHHHHhc-CCcHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 1122223333321 1111001101 1 123344444443 4567788888777765543321 1234
Q ss_pred cccchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 240 FETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 240 ~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
.+...++.+ ..++ .++.++..|+.+|..|+..
T Consensus 290 ~~~g~i~~L-v~lL~~~~~~v~~~a~~aL~nl~~~ 323 (529)
T 3tpo_A 290 VKKGVVPQL-VKLLGATELPIVTPALRAIGNIVTG 323 (529)
T ss_dssp HTTTCHHHH-HHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HhccchHHH-HHHhcCCChhHHHHHHHHHHHHHcc
Confidence 455666665 3444 4567888899999888653
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.46 E-value=12 Score=30.60 Aligned_cols=189 Identities=11% Similarity=0.065 Sum_probs=110.2
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
+.+.++.++..+.+++...|..|-..|.++.. +++...+...|. +.++.+|..|+..|...- +++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~-------~~~~~---- 83 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALK-DEDAWVRRAAADALGQIG-------DERAV---- 83 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHC-------CGGGH----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhC-------CHHHH----
Confidence 55677888888888888899999999988864 678888888886 458999999999887642 12222
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccC
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFS 180 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~ 180 (352)
..+...+ .+ .++.++...+.++..+. -+..++.++..+..+. .........|..+..
T Consensus 84 ~~L~~~l----~~-----~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 84 EPLIKAL----KD-----EDGWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp HHHHHHT----TC-----SSHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHH----cC-----CCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 2233332 22 34556666666666552 2456667776665332 233333344433211
Q ss_pred CCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHH
Q psy13179 181 GGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRN 260 (352)
Q Consensus 181 ~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~ 260 (352)
+..+..+...+ ...++.+...+..++..+-. ... -+.+...+ .. .++.+|.
T Consensus 142 --------------------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----~~~-~~~L~~~l-~d--~~~~vr~ 192 (211)
T 3ltm_A 142 --------------------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----ERV-RAAMEKLA-ET--GTGFARK 192 (211)
T ss_dssp --------------------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----HHH-HHHHHHHH-HH--CCHHHHH
T ss_pred --------------------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----hhH-HHHHHHHH-hC--CCHHHHH
Confidence 11222223333 23566777777777776521 121 12344543 33 7788999
Q ss_pred HHHHHHHHHHhccC
Q psy13179 261 VTLKCLTEIAAVSG 274 (352)
Q Consensus 261 ~al~cL~ei~~~~~ 274 (352)
.|.++|..+-..+.
T Consensus 193 ~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 193 VAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHHhcCCCCC
Confidence 99999988876654
No 42
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=86.24 E-value=15 Score=31.53 Aligned_cols=178 Identities=11% Similarity=0.134 Sum_probs=107.0
Q ss_pred hcCChHhHHHHHHHHHH-H-hcCCCh----------HHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC-HHHH-HH
Q psy13179 34 YTGMGVEQKAAQEVLTA-L-KEHPDA----------WTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP-REQC-DG 99 (352)
Q Consensus 34 ~~~~~~~r~~A~~~L~~-f-k~~p~~----------w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~-~e~k-~~ 99 (352)
-+++-.+|++|-.-|.. + ...|+. +..+...+....+..++.-|+.+|...... +. +.-. ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~----l~~~~f~~~y 101 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK----LKTPGFSKDY 101 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH----HCTTTSCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh----cccccccHHH
Confidence 34566689988888888 5 343322 223333454566888999999999987742 22 2222 33
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC---C-cchhHHHHHHhcccC-hhhhhHHHHHHHhHHH
Q psy13179 100 IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK---N-WQSFIPDIVGASKTN-ESLCQNNMVILKLLSE 174 (352)
Q Consensus 100 ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~---~-Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~e 174 (352)
.+. ++..+.....+ ..+.++..+..++..++...-|. . =+..+++++..+++. ....+..+.+|..+.+
T Consensus 102 ~~~-llp~ll~~l~d-----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 102 VSL-VFTPLLDRTKE-----KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHH-HHHHHHHGGGC-----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 333 44444443222 34567788888999999875332 1 236888888888653 3455566666666554
Q ss_pred HhhccCCCcccHHHHHHHHHHHHHhH-HHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc
Q psy13179 175 EVFDFSGGQLTQAKAKHLKDSMCLQF-SQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP 235 (352)
Q Consensus 175 Ev~~~~~~~l~~~r~~~lk~~l~~~~-~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~ 235 (352)
. .... .+.+...+ +.++..+..++.. .++++...+.+|+......+.
T Consensus 176 ~---~~~~----------~~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 176 E---EKDG----------YSTLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp H---CCSC----------SHHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHC
T ss_pred H---cCCc----------chhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC
Confidence 3 1110 01233445 5666666666643 577888888888888766555
No 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=85.46 E-value=30 Score=34.07 Aligned_cols=140 Identities=11% Similarity=0.055 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCC----------hHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPD----------AWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~----------~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
+...+..++..+.+++...|..|-..|.++-..+. ....+...|.++.++.+|..|+.+|.+...
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~----- 86 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----- 86 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-----
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----
Confidence 33456666666667777788888888888766543 344455556666688999999999986433
Q ss_pred CCHHHHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc-----chhHHHHHHhcccChh-hhhH
Q psy13179 92 LPREQCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW-----QSFIPDIVGASKTNES-LCQN 164 (352)
Q Consensus 92 l~~e~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W-----p~fi~~l~~~~~~~~~-~~~~ 164 (352)
.++.+..+.+ ..+..+...-.+ .++.++...+.++..++... +..- ...++-+++.++++.. ....
T Consensus 87 -~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~ 159 (644)
T 2z6h_A 87 -HREGLLAIFKSGGIPALVKMLGS-----PVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159 (644)
T ss_dssp -SHHHHHHHHTTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred -ChhhHHHHHHcCCHHHHHHHHhC-----CCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHH
Confidence 2334444332 344555554322 24566677888888888764 2211 4577788888865432 2223
Q ss_pred HHHHHHhHH
Q psy13179 165 NMVILKLLS 173 (352)
Q Consensus 165 ~l~iL~~L~ 173 (352)
.+.+|..|+
T Consensus 160 a~~~L~~La 168 (644)
T 2z6h_A 160 TTDCLQILA 168 (644)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555554
No 44
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=84.32 E-value=28 Score=32.81 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcC----------CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEH----------PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~----------p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
+...+..++..+.+++...|..|-..|.++-.. +++.......|.++.++.++..|+..|.+...
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~----- 89 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----- 89 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----
Confidence 334566667666667777888888888776543 34556666667666788999999999998433
Q ss_pred CCHHHHHHHH-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc-----chhHHHHHHhcccCh-hhhhH
Q psy13179 92 LPREQCDGIK-KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW-----QSFIPDIVGASKTNE-SLCQN 164 (352)
Q Consensus 92 l~~e~k~~ik-~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W-----p~fi~~l~~~~~~~~-~~~~~ 164 (352)
.++.+..+. ...+..+...-.+ .++.++...+.++..+...+ +... ...++-+++.+.++. .....
T Consensus 90 -~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 90 -HREGLLAIFKSGGIPALVKMLGS-----PVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred -CchhHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 233444333 2344455544322 24556677777888777652 2211 356777787776543 22333
Q ss_pred HHHHHHhHH
Q psy13179 165 NMVILKLLS 173 (352)
Q Consensus 165 ~l~iL~~L~ 173 (352)
....|..++
T Consensus 163 ~~~~L~~la 171 (529)
T 1jdh_A 163 TTDCLQILA 171 (529)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555443
No 45
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=83.90 E-value=20 Score=30.81 Aligned_cols=181 Identities=8% Similarity=0.056 Sum_probs=100.4
Q ss_pred cCCchHHHHHHHHHHHH-HHhhccCCCC--HHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC
Q psy13179 67 YSSNQQTKFYALQILEQ-VIKTRWKALP--REQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN 143 (352)
Q Consensus 67 ~s~~~~vrffal~~L~~-~I~~~W~~l~--~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~ 143 (352)
.|.+-.-|.-|+..|.. .+...= .+. ..+...+-+.+...+.. ..+..++...+.++..++..-=...
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~-~i~~~~~~~~~~~~~L~~~l~~--------D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTK-KLKSTSQNYSNLLGIYGHIIQK--------DANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCC-CBCCTTCCCHHHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCC-ccccCcccHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHHHHhccccc
Confidence 36678888888888888 664311 122 22223333344444422 1345566888899999986442045
Q ss_pred cc-hh----HHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCh
Q psy13179 144 WQ-SF----IPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNA 217 (352)
Q Consensus 144 Wp-~f----i~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~ 217 (352)
+. .+ ++-++..++.. ...++.....|..+.+.+.... .. ...+.+++-+...|.. .++
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~-~~--------------~~l~~ll~~l~~~l~~-k~~ 160 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA-SS--------------GRNEDMLKDILEHMKH-KTP 160 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC-TT--------------CTTHHHHHHHHHHTTC-SSH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc-cC--------------CcHHHHHHHHHHHHcC-CCh
Confidence 55 44 44444544432 2233333344444444321100 00 0012344444444543 478
Q ss_pred HHHHHHHHHHHhccccCcc--h---hhcccchHHHHHHhhcC--chhhHHHHHHHHHHHHhcc
Q psy13179 218 SLVGATLETLLRFLNWIPL--G---YIFETNLITTLIEKFLN--VPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 218 ~l~~~~L~~l~~~l~Wi~~--~---~i~~~~ll~~l~~~~l~--~~~~~~~al~cL~ei~~~~ 273 (352)
.+...++.++.+++.-.+. . ..+.+.+++.+ ..+++ ++.+|..|.+|+..+...-
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l-~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIV-IQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999988755442 1 11235688886 56664 5679999999999987543
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.16 E-value=37 Score=33.36 Aligned_cols=130 Identities=14% Similarity=0.165 Sum_probs=74.4
Q ss_pred HHHHHHHhcCChHhHHHHHHHHHHHhc-CCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q psy13179 27 DNIVECMYTGMGVEQKAAQEVLTALKE-HPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKK 102 (352)
Q Consensus 27 ~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~ 102 (352)
-.+++.+.+++-+.|+-+.-++..+-+ +|+.-..+..-|. .+.++.+|-.|+.+|-+.. +++--..+-.
T Consensus 73 ~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~ 145 (618)
T 1w63_A 73 LECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAG 145 (618)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHH
Confidence 344454445555667777777776654 3443333333332 3568888988888887753 2232233333
Q ss_pred HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHH
Q psy13179 103 YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLS 173 (352)
Q Consensus 103 ~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~ 173 (352)
.+...+. ..++.++.+.+.++..+.+. .|+.=+.+++.+...+...+ ..+..++..|..+.
T Consensus 146 ~l~~~L~---------~~~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 146 EVEKLLK---------TSNSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp HHHHHHH---------SCCHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHc---------CCCHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 3333332 13566778899999999985 57655566666666665432 34445555555443
No 47
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=81.54 E-value=42 Score=32.92 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHhcCChHhHHHHHHHHHHHhcCCChH----HHHHHHhccCCchHHHHHHHHHHHHHHhh
Q psy13179 32 CMYTGMGVEQKAAQEVLTALKEHPDAW----TRVDTILEYSSNQQTKFYALQILEQVIKT 87 (352)
Q Consensus 32 ~~~~~~~~~r~~A~~~L~~fk~~p~~w----~~~~~iL~~s~~~~vrffal~~L~~~I~~ 87 (352)
.+.+|++..|..|-..|-.+.. |+.. ..+...|. +.+++||--|+..+-+..+.
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~~-~~~~~~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMGS-SEMCRDLAGEVEKLLK-TSNSYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 3445566678888888888863 4442 23333343 57899999999999887764
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=80.26 E-value=31 Score=30.54 Aligned_cols=183 Identities=11% Similarity=0.143 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHhcCCh------------HhHHHHHHHHHHHhcC---------CChHHHHHH-HhccCCchHHHHHHHH
Q psy13179 22 DITLLDNIVECMYTGMG------------VEQKAAQEVLTALKEH---------PDAWTRVDT-ILEYSSNQQTKFYALQ 79 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~------------~~r~~A~~~L~~fk~~---------p~~w~~~~~-iL~~s~~~~vrffal~ 79 (352)
+++.+..++..+.+|.+ +.|..|-..|.++-++ -+++..+.. +|. +.++.+|..|+.
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~ 104 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHH
Confidence 57888999999888721 2566777777776553 346666777 775 568899999999
Q ss_pred HHHHHHhhccCCCCHHHHHHH-HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC--Cc--chhHHHHHHh
Q psy13179 80 ILEQVIKTRWKALPREQCDGI-KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK--NW--QSFIPDIVGA 154 (352)
Q Consensus 80 ~L~~~I~~~W~~l~~e~k~~i-k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~--~W--p~fi~~l~~~ 154 (352)
+|-+.... +++.|..+ +.-.+..+.+.-.. ..+..++.+.+-+|+.|++..=|. .. .+.++-++..
T Consensus 105 ~Lg~ia~~-----n~~~~~~vv~~g~l~~Ll~LL~~----~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 105 LIGTCSQN-----VAAIQEQVLGLGALRKLLRLLDR----DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhC-----CHHHHHHHHHCCCHHHHHHHHcc----CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHH
Confidence 99998763 44444433 33344444433110 124567788899999887642111 11 2355556655
Q ss_pred cccCh-hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHH-h-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Q psy13179 155 SKTNE-SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCL-Q-FSQIFTLCQFVLDNSSNASLVGATLETLLRFL 231 (352)
Q Consensus 155 ~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~-~-~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l 231 (352)
+++++ .........|..|... +. ..++.+.+ . ++.++. +|. +.++.+...++.++...+
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~----~~---------~~~~~vv~~g~i~~Lv~----LL~-~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVG----HP---------EHKGTLCSMGMVQQLVA----LVR-TEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHH----CG---------GGHHHHHHTTHHHHHHH----HHT-SCCSTHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhC----Ch---------HHHHHHHHcCCHHHHHH----HHc-CCChhHHHHHHHHHHHHH
Confidence 55432 3334455555555432 10 01112221 1 233433 343 346677888888887765
Q ss_pred c
Q psy13179 232 N 232 (352)
Q Consensus 232 ~ 232 (352)
.
T Consensus 238 ~ 238 (296)
T 1xqr_A 238 T 238 (296)
T ss_dssp T
T ss_pred h
Confidence 4
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=77.50 E-value=57 Score=32.08 Aligned_cols=133 Identities=11% Similarity=0.147 Sum_probs=77.2
Q ss_pred HHHHHHHhcCChHhHHHHHHHHHHHhcC-CChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q psy13179 27 DNIVECMYTGMGVEQKAAQEVLTALKEH-PDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKK 102 (352)
Q Consensus 27 ~~~v~~~~~~~~~~r~~A~~~L~~fk~~-p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~ 102 (352)
-.+++.+-+++-..|+-+.-++..+-+. |+-...+...+. .++++.+|-.|+.+|-+.. .++--+.+-.
T Consensus 77 ~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~ 149 (621)
T 2vgl_A 77 MEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAG 149 (621)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHH
Confidence 3444544455556777777777776543 454444443332 2567888888888887752 2333333333
Q ss_pred HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcc--hhHHHHHHhcccC-hhhhhHHHHHHHhHHH
Q psy13179 103 YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQ--SFIPDIVGASKTN-ESLCQNNMVILKLLSE 174 (352)
Q Consensus 103 ~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp--~fi~~l~~~~~~~-~~~~~~~l~iL~~L~e 174 (352)
.+...+.+ . ..++.++.+.+.++..+.+. .|+.=+ ++++.+...+..+ +....+++..|..+++
T Consensus 150 ~v~~~l~~--~-----d~~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 150 EIPKILVA--G-----DTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHHHHHHC--S-----SSCHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--C-----CCCHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 33333321 2 24566779999999999985 476444 6677777766543 3444455666655554
No 50
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=76.55 E-value=29 Score=28.09 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=98.3
Q ss_pred HHhcCChHhHHHHHHHHHHHhcCC----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 32 CMYTGMGVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 32 ~~~~~~~~~r~~A~~~L~~fk~~p----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
.+.+++.+.|..|-..|..+-... ++......+|.. .++.+|..|+.+|.+.... +++.+..+.
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~ 93 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASG-----GNEQIQAVI 93 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-----CcHHHHHHH
Confidence 334455556666666676665322 455666666754 5889999999999987632 344444443
Q ss_pred -HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC-----cchhHHHHHHhcccC-hhhhhHHHHHHHhHHH
Q psy13179 102 -KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN-----WQSFIPDIVGASKTN-ESLCQNNMVILKLLSE 174 (352)
Q Consensus 102 -~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~-----Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~e 174 (352)
.-.+..+...-.+ .++.++...+.++..+.... |+. -...++.+++.+.++ .......+..|..++.
T Consensus 94 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 94 DAGALPALVQLLSS-----PNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HTTCHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHcC-----CcHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2244555544322 24566777788888877431 111 235778888888654 3455667777776653
Q ss_pred HhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Q psy13179 175 EVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFL 231 (352)
Q Consensus 175 Ev~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l 231 (352)
. + ...+ ..+.+. ..+..+..++. +.++.+.+.++.++..+.
T Consensus 168 ~----~----~~~~-----~~~~~~--g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 168 G----G----NEQK-----QAVKEA--GALEKLEQLQS-HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp S----C----HHHH-----HHHHHT--THHHHHHHGGG-CSCHHHHHHHHHHHHHHC
T ss_pred C----C----cHHH-----HHHHHC--CCHHHHHHHHh-CCCHHHHHHHHHHHHHHh
Confidence 1 0 1111 112211 12333333444 467888888888887653
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=75.76 E-value=35 Score=28.65 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHh--H-cCCCcchhHHHHHHhcc-c-ChhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHH
Q psy13179 121 EKMYLNKLNMILVQVLKR--E-WPKNWQSFIPDIVGASK-T-NESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDS 195 (352)
Q Consensus 121 ~~~~~~kl~~~l~~I~~~--~-~P~~Wp~fi~~l~~~~~-~-~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~ 195 (352)
+...+......+..++.. . .+....++++-+...+. . +...+..++..|..|...+. ..
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~----------------~~ 91 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA----------------KR 91 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG----------------GG
T ss_pred CHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh----------------hh
Confidence 344454455555555553 1 12345566666666663 3 33455677777777774321 11
Q ss_pred HHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHhcc
Q psy13179 196 MCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 196 l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~~ 273 (352)
+....+.++..+...+.. .++.+...+..++..++...+++ .+++.+ ...+ .++.+|..++.+|..++...
T Consensus 92 ~~~~~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~~~-----~ll~~l-~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKE-KKPNVVTALREAIDAIYASTSLE-----AQQESI-VESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GHHHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSCHH-----HHHHHH-HHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCCHH-----HHHHHH-HHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 233344455555555443 56788888888888887766543 355555 3444 46899999999999987663
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=74.46 E-value=60 Score=30.82 Aligned_cols=223 Identities=13% Similarity=0.142 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCC-hHhHHHHHHHHHHHhc-C---------CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 26 LDNIVECMYTGM-GVEQKAAQEVLTALKE-H---------PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 26 L~~~v~~~~~~~-~~~r~~A~~~L~~fk~-~---------p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
+..+|+.+-.++ +..|.+|-..|.++-. + .++......+|. +.++.+|-.|+.+|.+.... ++
T Consensus 102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d-----~~ 175 (510)
T 3ul1_B 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGD-----GS 175 (510)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTT-----CH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhC-----CH
Confidence 344555554444 4457777777877643 2 235556666664 57889999999999997642 34
Q ss_pred HHHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-Cc---chhHHHHHHhcccCh-hhhhHHHHH
Q psy13179 95 EQCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NW---QSFIPDIVGASKTNE-SLCQNNMVI 168 (352)
Q Consensus 95 e~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~W---p~fi~~l~~~~~~~~-~~~~~~l~i 168 (352)
+.|..+.+ ..+..+...-..+........++..++.+++.+.+..-|. .+ ...++-++.++.++. ......+..
T Consensus 176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44544432 2344444432222111122345566667777776654332 22 246667777776543 344556666
Q ss_pred HHhHHHHhhccCCCcccHHHHHHHHHHHHHh-HHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccchH
Q psy13179 169 LKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQ-FSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNLI 245 (352)
Q Consensus 169 L~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~-~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll 245 (352)
|..|++. +..+... ..... .+.+.. +|. +.++.+...++.++.....--+. ..+.+.+.+
T Consensus 256 L~~L~~~---------~~~~~~~---i~~~g~i~~Lv~----lL~-~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l 318 (510)
T 3ul1_B 256 ISYLTDG---------PNERIEM---VVKKGVVPQLVK----LLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 318 (510)
T ss_dssp HHHHTSS---------CHHHHHH---HHTTTCHHHHHH----HHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHHHhhc---------hhhhHHH---HHhcccchhhhh----hhc-CCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence 6665531 1112111 11111 344443 343 45678888888888876543321 123344444
Q ss_pred HHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 246 TTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 246 ~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+.+ ..++ .++.++..|+.+|..+...
T Consensus 319 ~~L-~~LL~~~~~~v~~~A~~aL~nl~a~ 346 (510)
T 3ul1_B 319 AVF-PSLLTNPKTNIQKEATWTMSNITAG 346 (510)
T ss_dssp GGC-C-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHH-HHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 443 2333 4567888899999888753
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=73.68 E-value=42 Score=28.65 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHh----ccCCchHHHHHHHHHHHHHHhhccCCCCHHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKTRWKALPREQC 97 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL----~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k 97 (352)
+...+..++..+.+++...|..|-..|.++...+.....+..+| .++.++.+|..++..|.+.-... + ...
T Consensus 52 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~----~-~~~ 126 (280)
T 1oyz_A 52 GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN----P-IYS 126 (280)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC----G-GGH
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----C-ccc
Confidence 34456666666667777789999999988876655554444433 35678999999999998754321 1 111
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhH
Q psy13179 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLL 172 (352)
Q Consensus 98 ~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L 172 (352)
.. ++..+.....+ .++.++...+..+..+.. +..++.++..+..+. .........|..+
T Consensus 127 ~~----~~~~L~~~l~d-----~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 127 PK----IVEQSQITAFD-----KSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HH----HHHHHHHHTTC-----SCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHhhC-----CCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 12 23333332222 355666666666665432 346777777765433 3334444444433
No 54
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=70.86 E-value=12 Score=38.90 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhc
Q psy13179 200 FSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 200 ~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~ 272 (352)
++.+++++..+.....++.+...++.++++|.+|+....-+-+.+++.++ ..++ +.++..|+.+|..++..
T Consensus 503 l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~-~~l~-~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 503 IPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLV-RGLN-SSMSAQATLGLKELCRD 573 (971)
T ss_dssp HHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHH-HHHH-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhC-hHHHHHHHHHHHHHHHH
Confidence 45555533222211237889999999999999997632212234666653 3444 88999999999988843
No 55
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=70.58 E-value=20 Score=35.56 Aligned_cols=107 Identities=12% Similarity=0.207 Sum_probs=72.7
Q ss_pred chhhHHHhhcc--cccCCHHHHHHHHHHHh---cCChHh----------HHHHHHHHHHHhcCCChHHHHHHHhccCCch
Q psy13179 7 PNEQFKKLLDF--NQKLDITLLDNIVECMY---TGMGVE----------QKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71 (352)
Q Consensus 7 ~~~~~~~~l~~--~~~~di~~L~~~v~~~~---~~~~~~----------r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~ 71 (352)
|+++|..+++. .+.-|++.+..+++.++ +++.+. ..-+..+-+.|-+.++.......+|+ +.+.
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df 136 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDF 136 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCH
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccH
Confidence 45566666655 23468888888887764 343221 11234556677788999999999996 5799
Q ss_pred HHHHHHHHHHHHHHhhc----cCC-------------CCHHHHHHHHHHHHHHHHHhcCC
Q psy13179 72 QTKFYALQILEQVIKTR----WKA-------------LPREQCDGIKKYIVGLIIKTSST 114 (352)
Q Consensus 72 ~vrffal~~L~~~I~~~----W~~-------------l~~e~k~~ik~~ll~~l~~~~~~ 114 (352)
++|++++++|......+ |+. +=.+.|+.||+..+-.+...+.+
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 99999999999988654 432 11345888888888888776543
No 56
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=69.70 E-value=51 Score=32.49 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=99.9
Q ss_pred hHhHHHHHHHHHHHhcCCChHHHHHHHhc--cCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCc
Q psy13179 38 GVEQKAAQEVLTALKEHPDAWTRVDTILE--YSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTP 115 (352)
Q Consensus 38 ~~~r~~A~~~L~~fk~~p~~w~~~~~iL~--~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~ 115 (352)
.+.|+.|-|.|-..+.-|+...++.+++. ....=++|+=|+-.|+-. +. .+. + -..+++.+...-.+
T Consensus 242 APVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL--~D--LL~-~-----Ld~Vv~aVL~GL~D- 310 (800)
T 3oc3_A 242 APVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL--KE--FVE-D-----KDGLCRKLVSLLSS- 310 (800)
T ss_dssp CHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT--GG--GCC-C-----HHHHHHHHHHHTTC-
T ss_pred eehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH--HH--HHH-H-----HHHHHHHHHhhcCC-
Confidence 46799888888888555666666666652 234568999888888866 11 121 1 34445555443222
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh---hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHH
Q psy13179 116 ETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE---SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHL 192 (352)
Q Consensus 116 ~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~---~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~l 192 (352)
.+..++.-.|.++.-++ -|+.-+..+.-+.+.+..-+ ..+-..|.+|..|+.-=.. ... .
T Consensus 311 ----~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~-d------- 373 (800)
T 3oc3_A 311 ----PDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSI-P------- 373 (800)
T ss_dssp ----SSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCC-C-------
T ss_pred ----cccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--ccc-C-------
Confidence 24467777778888777 46666666666666654322 1222346677666542110 000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--CchhhHHHHHHHH
Q psy13179 193 KDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLKCL 266 (352)
Q Consensus 193 k~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL 266 (352)
....|.++.++ .+.-+++..++|+++..++ +..++.++++..+ .+++++..+.+..
T Consensus 374 ----p~LVPRL~PFL-----RHtITSVR~AVL~TL~tfL---------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 374 ----PERLKDIFPCF-----TSPVPEVRTSILNMVKNLS---------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp ----SGGGGGTGGGG-----TCSSHHHHHHHHHHTTTCC---------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ----hHHHHHHHhhh-----cCCcHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 02234444443 2345566666666666665 2344555444433 4455555555444
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=69.66 E-value=79 Score=30.11 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCC-hHhHHHHHHHHHHHhcCC----------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCH
Q psy13179 26 LDNIVECMYTGM-GVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPR 94 (352)
Q Consensus 26 L~~~v~~~~~~~-~~~r~~A~~~L~~fk~~p----------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~ 94 (352)
+..+|+.+...+ ++.|.+|-..|..+-... ++......+| .+.++.++-.|+.+|.+.... ++
T Consensus 121 ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL-~s~~~~v~e~A~~aL~nLa~~-----~~ 194 (529)
T 3tpo_A 121 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGA-----GS 194 (529)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTT-----CH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcc-----CH
Confidence 344455554443 445667777777764422 3444455545 467889999999999987642 45
Q ss_pred HHHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCC-Cc---chhHHHHHHhcccCh-hhhhHHHHH
Q psy13179 95 EQCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK-NW---QSFIPDIVGASKTNE-SLCQNNMVI 168 (352)
Q Consensus 95 e~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~-~W---p~fi~~l~~~~~~~~-~~~~~~l~i 168 (352)
+.|..+.+ ..+..+...-..+........++..++.+++.+.+..-|. .+ ...++-++.++.++. ......+..
T Consensus 195 ~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 195 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 274 (529)
T ss_dssp HHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 55555543 2344444432222111122345566677777776653332 22 346677777776543 344455666
Q ss_pred HHhHHHHhhccCCCcccHHHHHHHHHHHHH-hHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc--hhhcccchH
Q psy13179 169 LKLLSEEVFDFSGGQLTQAKAKHLKDSMCL-QFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL--GYIFETNLI 245 (352)
Q Consensus 169 L~~L~eEv~~~~~~~l~~~r~~~lk~~l~~-~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~--~~i~~~~ll 245 (352)
|..++.. +..+... .... .++.+.. +|. +.++.+...++.+++..+.--+. ..+.+.+.+
T Consensus 275 L~~l~~~---------~~~~~~~---v~~~g~i~~Lv~----lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l 337 (529)
T 3tpo_A 275 ISYLTDG---------PNERIEM---VVKKGVVPQLVK----LLG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL 337 (529)
T ss_dssp HHHHHSS---------CHHHHHH---HHTTTCHHHHHH----HHT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHHhhhh---------hhhhHHH---HHhccchHHHHH----Hhc-CCChhHHHHHHHHHHHHHccchHHHHHHhhcccH
Confidence 6655531 1112111 1111 1344444 343 46778888899998887654321 233444555
Q ss_pred HHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 246 TTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 246 ~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+.+ ..++ .++.++..|+-+|..|+..
T Consensus 338 ~~L-~~LL~~~~~~i~~~a~~aL~nl~~~ 365 (529)
T 3tpo_A 338 AVF-PSLLTNPKTNIQKEATWTMSNITAG 365 (529)
T ss_dssp GGH-HHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 554 3444 4678889999999888753
No 58
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=67.40 E-value=61 Score=28.00 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHh----HcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHH
Q psy13179 120 REKMYLNKLNMILVQVLKR----EWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKD 194 (352)
Q Consensus 120 ~~~~~~~kl~~~l~~I~~~----~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~ 194 (352)
.++.++-..-.++-.+.|+ .=+..-.+++++++...++.+ .....++++|+.|-+. .++++.-
T Consensus 45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~------vpL~~~~------ 112 (265)
T 3b2a_A 45 DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD------VPMGSKT------ 112 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT------CCBCHHH------
T ss_pred cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC------CCCCHHH------
Confidence 3556665555677778777 222345689999999987654 4556788999988764 1233311
Q ss_pred HHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 195 SMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 195 ~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+..+.+.+..++. .+++-+...+.+.++.. ++.. ..+.+++.+ +..+ .++.+..+++..|.+|.++
T Consensus 113 -----y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl----kv~~-~~~~V~~~l-~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 113 -----FLKAAKTLVSLLE-SPDDMMRIETIDVLSKL----QPLE-DSKLVRTYI-NELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp -----HHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC----CBSC-CCHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred -----HHHHHHHHHHHhc-CCCchHHHHHHHHhCcC----Cccc-chHHHHHHH-HHHHhCCChhHHHHHHHHHHHhhcc
Confidence 2224444444444 35555656666666665 1111 112344443 3333 4567777888888888877
Q ss_pred cCCc
Q psy13179 273 SGTY 276 (352)
Q Consensus 273 ~~~~ 276 (352)
..++
T Consensus 181 S~D~ 184 (265)
T 3b2a_A 181 SADS 184 (265)
T ss_dssp CSSC
T ss_pred cCCH
Confidence 6543
No 59
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=66.72 E-value=14 Score=38.19 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcCchhhHHHHHHHHHHHHhc
Q psy13179 215 SNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 215 ~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~~~~~~~~al~cL~ei~~~ 272 (352)
+++.+...++.++++|..|+....-+-+.+++.+ ...++++.++..|+.+|..++..
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l-~~~l~~~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPVMINSVLPLV-LHALGNPELSVSSVSTLKKICRE 557 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHH-HHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-HHHhCCchHHHHHHHHHHHHHHH
Confidence 4678899999999999999753222224677776 45667799999999999998854
No 60
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=66.09 E-value=1.3e+02 Score=31.16 Aligned_cols=73 Identities=22% Similarity=0.298 Sum_probs=43.6
Q ss_pred HHHHHhcCChHhHHHHHHHHHHHhc--CCChHHHHHHHh-c--cCCchHHHHHHHHHHHHHHhhccCC--CCHHHHHHHH
Q psy13179 29 IVECMYTGMGVEQKAAQEVLTALKE--HPDAWTRVDTIL-E--YSSNQQTKFYALQILEQVIKTRWKA--LPREQCDGIK 101 (352)
Q Consensus 29 ~v~~~~~~~~~~r~~A~~~L~~fk~--~p~~w~~~~~iL-~--~s~~~~vrffal~~L~~~I~~~W~~--l~~e~k~~ik 101 (352)
+++.+.++++..|.++-..+..+-+ -|+.|.-+...| + +++++..+.-|+.+|...+ ++|.. -+++.+..++
T Consensus 90 ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~-~~~~~~~~~~~~~~~l~ 168 (960)
T 1wa5_C 90 IVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF-KRWRPLFRSDELFLEIK 168 (960)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH-GGGTTSCCCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHhhcChHHHHHHH
Confidence 3444445555567777767766443 478887555543 2 2446667777888888855 45653 3555555554
Q ss_pred H
Q psy13179 102 K 102 (352)
Q Consensus 102 ~ 102 (352)
.
T Consensus 169 ~ 169 (960)
T 1wa5_C 169 L 169 (960)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.84 E-value=49 Score=26.75 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHH
Q psy13179 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQV 84 (352)
Q Consensus 23 i~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~ 84 (352)
.+.+..++..+.+++...|..|-..|..+. .+++...+...+. +.++.+|..|+..|...
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIKALK-DEDWFVRIAAAFALGEI 139 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHh-CCCHHHHHHHHHHHHHc
Confidence 345666666666777778888888888774 4667777777774 56788888888888764
No 62
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=64.79 E-value=21 Score=28.32 Aligned_cols=65 Identities=15% Similarity=0.172 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCh--HhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 24 TLLDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~--~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
..++..|+.+-+++. +.-....++++.....+++-..+...|. .+.++.+..+|+.+|+..+++.
T Consensus 10 ~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNC 79 (149)
T 3g2s_A 10 ETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSC 79 (149)
T ss_dssp CCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 346777777766633 3466678888888888877666666542 2678999999999999998864
No 63
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=64.64 E-value=50 Score=25.98 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCh--HhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 26 LDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 26 L~~~v~~~~~~~~--~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
++..|+.+-+++. +.-....++++.....+++-..+...+. .+.++.+..+|+.+|+..+++.
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC 69 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHC 69 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 4555655555422 2445566778888777766665555543 3679999999999999999973
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=64.63 E-value=70 Score=27.65 Aligned_cols=212 Identities=12% Similarity=0.047 Sum_probs=118.0
Q ss_pred cCCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHH
Q psy13179 20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDG 99 (352)
Q Consensus 20 ~~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ 99 (352)
.++++++..-+. ..++-+..+-.+.+++.......+| +..++.++.=++.+|++.++. +|..-+..
T Consensus 6 ii~~~~lre~L~---------sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~----~~~~l~~~ 71 (265)
T 3b2a_A 6 PISKTELRELVL---------SWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKR----ADSDLRMM 71 (265)
T ss_dssp CCCHHHHHHHHH---------TTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHH----SCHHHHHH
T ss_pred cccHHHHHHHHH---------HhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHh----ccccccHH
Confidence 345666555553 2234444555667777888888888 467899999999999999996 44555555
Q ss_pred HHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcC--CCcchhHHHHHHhcccChhhhhHHHHHHHhHHHHhh
Q psy13179 100 IKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWP--KNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVF 177 (352)
Q Consensus 100 ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P--~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~ 177 (352)
+-+.+++-++....+ .+.-+.-+...++-.+....=+ +.+.-...-+.+...++. ++.-+ .++|.+.
T Consensus 72 ~~e~~Ld~iI~llk~-----~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~-----~il~~-eaae~Lg 140 (265)
T 3b2a_A 72 VLERHLDVFINALSQ-----ENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPD-----DMMRI-ETIDVLS 140 (265)
T ss_dssp HHHHHHHHHHHTCCS-----TTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCC-----HHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCC-----chHHH-HHHHHhC
Confidence 555566656554322 2333333445555555544211 112222222222222211 11111 1122222
Q ss_pred ccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcchhhcc---cchHHHHHHhhcC
Q psy13179 178 DFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFE---TNLITTLIEKFLN 254 (352)
Q Consensus 178 ~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~~~i~~---~~ll~~l~~~~l~ 254 (352)
.... ....+.+..++..++ .+.++++-.+++..+...-+.-.-..+++ .++=.++ . -.
T Consensus 141 klkv---------------~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL-~--~e 201 (265)
T 3b2a_A 141 KLQP---------------LEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLL-Q--ND 201 (265)
T ss_dssp HCCB---------------SCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHH-T--CS
T ss_pred cCCc---------------ccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH-c--CC
Confidence 2210 111344777777777 66788998888888887665443112222 1222222 1 25
Q ss_pred chhhHHHHHHHHHHHHhccCC
Q psy13179 255 VPLFRNVTLKCLTEIAAVSGT 275 (352)
Q Consensus 255 ~~~~~~~al~cL~ei~~~~~~ 275 (352)
|+.+++-|++.+-+|++++..
T Consensus 202 D~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 202 NEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHHHHcCccc
Confidence 899999999999999999765
No 65
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=62.67 E-value=25 Score=28.54 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCh--HhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 24 TLLDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~--~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
..+++.|+.+-+++. +.-....++++.++.++++-..+...|. .+.++.++.+|+.+|+..+++.
T Consensus 12 s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 12 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 346777776666532 2455677888888888876666666552 3678999999999999999874
No 66
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=60.20 E-value=35 Score=27.14 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHh----ccCCchHHHHHHHHHHHHHHhhc
Q psy13179 25 LLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 25 ~L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL----~~s~~~~vrffal~~L~~~I~~~ 88 (352)
.++..|+.+-+++ .+.-....++++..+.++++-..+...+ .++.++.++.+|+.+|+..+++.
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc 85 (157)
T 1elk_A 16 PVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNC 85 (157)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 4677777766653 2345567778888888877766666655 33468899999999999999874
No 67
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=59.97 E-value=58 Score=25.23 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 26 LDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 26 L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
+++.|+.+-+++ .+.-....++++....+|++-..+...+. .+.++.++..|+.+|+..+++.
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 345555555542 23456677788888888776666666532 2568899999999999999864
No 68
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.93 E-value=26 Score=28.11 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 26 LDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 26 L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
++..|+.+-+++ .+.-....++++.++.++++-..+...|. .+.++++++.|+.+|+..|++.
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNc 83 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANC 83 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 445665555543 22455567788888888876666666552 2578999999999999999863
No 69
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.49 E-value=38 Score=28.70 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCh--HhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 25 LLDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 25 ~L~~~v~~~~~~~~--~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
.+++.|+.+-++++ +.-....++.+.+..++++-..+...|. .+.+++++..|+.+|+..|++-
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNc 76 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNC 76 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 56777777766643 2455677788888877765555555442 2678999999999999988863
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=53.94 E-value=1.1e+02 Score=26.75 Aligned_cols=138 Identities=11% Similarity=0.134 Sum_probs=84.0
Q ss_pred HHHHHHH-HHhcCChHhHHHHHHHHHHHhc-CC---------ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCC
Q psy13179 25 LLDNIVE-CMYTGMGVEQKAAQEVLTALKE-HP---------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (352)
Q Consensus 25 ~L~~~v~-~~~~~~~~~r~~A~~~L~~fk~-~p---------~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~ 93 (352)
.+..++. .+.+|+++.|..|-..|-.+-. +| ++......+|.++.+..+|--|+.+|-+.++. .
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~-----~ 156 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE-----Q 156 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-----C
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-----C
Confidence 3455566 5556677778888877776543 33 45566667777655788888888888887763 2
Q ss_pred HHHHH-HHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCC-----cchhHHHHHHhcccC-hhhhhHHH
Q psy13179 94 REQCD-GIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN-----WQSFIPDIVGASKTN-ESLCQNNM 166 (352)
Q Consensus 94 ~e~k~-~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~-----Wp~fi~~l~~~~~~~-~~~~~~~l 166 (352)
++.++ -+..-.+..+...-. ..+..++.+.+-+++.++.. -|+. =..+++.++.++.++ ....+..+
T Consensus 157 ~~~~~~~~~~ggi~~L~~lL~-----~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al 230 (296)
T 1xqr_A 157 EAGLLQFLRLDGFSVLMRAMQ-----QQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230 (296)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH-----SSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHH
Confidence 22222 222233444433211 13556778899999998876 2321 124667777777654 34556677
Q ss_pred HHHHhHH
Q psy13179 167 VILKLLS 173 (352)
Q Consensus 167 ~iL~~L~ 173 (352)
..|..|.
T Consensus 231 ~aL~~l~ 237 (296)
T 1xqr_A 231 GALCSLV 237 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776665
No 71
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=52.94 E-value=73 Score=28.64 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=8.5
Q ss_pred hhhH-HHHHHHHHHHHhc
Q psy13179 256 PLFR-NVTLKCLTEIAAV 272 (352)
Q Consensus 256 ~~~~-~~al~cL~ei~~~ 272 (352)
|..| ..+++|++.|+++
T Consensus 87 p~aRepeVL~l~~tii~k 104 (321)
T 1w9c_A 87 PAAREPEVLSTMAIIVNK 104 (321)
T ss_dssp GGGCCTHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 4444 3445555555544
No 72
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=52.75 E-value=59 Score=25.71 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCC--hHhHHHHHHHHHHHhcCCChHHHHHHHh----ccCCchHHHHHHHHHHHHHHhhc
Q psy13179 25 LLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 25 ~L~~~v~~~~~~~--~~~r~~A~~~L~~fk~~p~~w~~~~~iL----~~s~~~~vrffal~~L~~~I~~~ 88 (352)
.+++.|+.+-+++ .+.-....++++.+..++++-..+...+ ..+.++.+..+|+.+|+..+++.
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNC 85 (152)
T 3rru_A 16 SVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNC 85 (152)
T ss_dssp HHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhc
Confidence 4566676666653 2345567778888888777666665554 33457888888888888888763
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.40 E-value=87 Score=24.93 Aligned_cols=120 Identities=11% Similarity=0.070 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q psy13179 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKY 103 (352)
Q Consensus 24 ~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ 103 (352)
..++.+++.+.+++...|..|-..|..+. .+++...+...|. +.++.+|..|+..|...- +++. ...
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~-------~~~~----~~~ 111 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIG-DERAVEPLIKALK-DEDGWVRQSAAVALGQIG-------DERA----VEP 111 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC-------CGGG----HHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-------cHHH----HHH
Confidence 55677777777788888999999998875 5678888888775 468899999999997741 1122 222
Q ss_pred HHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhH
Q psy13179 104 IVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLL 172 (352)
Q Consensus 104 ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L 172 (352)
+...+ .+ .++.++...+.++..+. -+..++.+...+.... .........|..+
T Consensus 112 L~~~l----~d-----~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 112 LIKAL----KD-----EDWFVRIAAAFALGEIG-------DERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHT----TC-----SSHHHHHHHHHHHHHHT-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHH----cC-----CCHHHHHHHHHHHHHhC-------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33333 22 35566677777777663 2456777777775432 3344444444433
No 74
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=52.19 E-value=2.1e+02 Score=29.81 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcC
Q psy13179 68 SSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWP 141 (352)
Q Consensus 68 s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P 141 (352)
+.++.++--++.+|...|. |- +..... ...+++.+.+.. ..+.++...+.++.+|+.+..+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~--wi--~~~~i~--~~~ll~~l~~~L-------~~~~~r~~A~ecL~ei~~k~~~ 264 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS--WI--NINLIV--NEPCMNLLYSFL-------QIEELRCAACETMTEIVNKKMK 264 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT--TS--CHHHHH--CHHHHHHHHHHT-------TSHHHHHHHHHHHHHHHHSCCC
T ss_pred cCCHHHHHHHHHHHHHHHh--hc--CHHhhh--cchHHHHHHHHc-------CChHHHHHHHHHHHHHHHcCCC
Confidence 3567777889999999887 74 433322 245666665542 2356778899999999988543
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=51.16 E-value=26 Score=26.31 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQ 83 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~ 83 (352)
++.++..+.+++...|..|-..|.++. .+++...+...|. +.++.||..|+..|.+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~-d~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLE-DDSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHH-HCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 455555555667777888877777765 3556666666664 4567888888777765
No 76
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=50.25 E-value=1.3e+02 Score=26.19 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=88.1
Q ss_pred CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHh----HcCCC
Q psy13179 68 SSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKR----EWPKN 143 (352)
Q Consensus 68 s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~----~~P~~ 143 (352)
+++..-+.-|+..|.+.+.. .++.-...=+-++.|+.-... .++..+..+.-.++..++.+ +|.-.
T Consensus 57 s~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~-----d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFF-----ETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTT-----SCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 34667777788888887764 223322223346777653221 13444555666665555433 22211
Q ss_pred cchhHHHHHHhcccChhhhhHHHHHHHhHHHHhhccCCCcccHHH--HHHHHHHHHHh--HHHHHHHHHHHHhcCCChHH
Q psy13179 144 WQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAK--AKHLKDSMCLQ--FSQIFTLCQFVLDNSSNASL 219 (352)
Q Consensus 144 Wp~fi~~l~~~~~~~~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r--~~~lk~~l~~~--~~~i~~l~~~iL~~~~~~~l 219 (352)
+ .+ .-.++-.|.|-+.+- + ..-| ...+-..+... ...++..+...+ .+.+...
T Consensus 127 ---------------~--~e-a~~~lP~LveKlGd~-k---~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~ 183 (266)
T 2of3_A 127 ---------------Q--EE-VSAFVPYLLLKTGEA-K---DNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQ 183 (266)
T ss_dssp ---------------H--HH-HHHHHHHHHHGGGCS-S---HHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHH
T ss_pred ---------------H--HH-HHHHHHHHHHHhCCC-h---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHH
Confidence 0 01 112444444433321 1 1111 11111222221 133666665555 3467788
Q ss_pred HHHHHHHHHhccccCcchhhcccchH---HHHHHhhcC--chhhHHHHHHHHHHHHhccC
Q psy13179 220 VGATLETLLRFLNWIPLGYIFETNLI---TTLIEKFLN--VPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 220 ~~~~L~~l~~~l~Wi~~~~i~~~~ll---~~l~~~~l~--~~~~~~~al~cL~ei~~~~~ 274 (352)
...+|.++.+.++=-... ....+ +.+ ..+++ |.++|++|+.|+.++...-+
T Consensus 184 R~e~l~~l~~li~~~G~~---~~~~l~~~~~i-a~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 184 RSECLLVIEYYITNAGIS---PLKSLSVEKTV-APFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHHHHHHHHCSG---GGGGGCHHHHH-GGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCC---ccccccchHHH-HHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 888888888776543332 12244 555 56664 56899999999999986544
No 77
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.06 E-value=59 Score=27.28 Aligned_cols=63 Identities=13% Similarity=0.156 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCh--HhHHHHHHHHHHHhcCCChHHHHHHHhc---cCCchHHHHHHHHHHHHHHhhc
Q psy13179 26 LDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTILE---YSSNQQTKFYALQILEQVIKTR 88 (352)
Q Consensus 26 L~~~v~~~~~~~~--~~r~~A~~~L~~fk~~p~~w~~~~~iL~---~s~~~~vrffal~~L~~~I~~~ 88 (352)
+++.|+.+-+++. +.-....++.+.+...+++-..+...|. .+.++.++.+|+.+|+..+++-
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 5666665555422 2344566677777777766655555542 2578999999999999999873
No 78
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=46.14 E-value=2.3e+02 Score=28.02 Aligned_cols=200 Identities=10% Similarity=0.091 Sum_probs=108.2
Q ss_pred hHHHHHHHhcc--CCchHHHHHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHHH-HHhcCCcchhhhhHHHHHH
Q psy13179 57 AWTRVDTILEY--SSNQQTKFYALQILEQVIKTRW------KALPREQCDGIKKYIVGLI-IKTSSTPETLEREKMYLNK 127 (352)
Q Consensus 57 ~w~~~~~iL~~--s~~~~vrffal~~L~~~I~~~W------~~l~~e~k~~ik~~ll~~l-~~~~~~~~~~~~~~~~~~k 127 (352)
.|+.|..++.. +..=++|+=|+..|++.++..= ...+. .+--.++..+ ...-+|....+.-.+++..
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRET 247 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDA 247 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHH
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHH
Confidence 44455555543 4456999999999999998752 12232 2222222222 2222232222344668899
Q ss_pred HHHHHHHHHHhHcCCCcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccCCCcccHH----------HHHHHHH--
Q psy13179 128 LNMILVQVLKREWPKNWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFSGGQLTQA----------KAKHLKD-- 194 (352)
Q Consensus 128 l~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l~~~----------r~~~lk~-- 194 (352)
.||+++.+ ++ .|+. -..+..++.....+. ..+..||..|+.+ .|+.. . +... ....++.
T Consensus 248 aAQtLGaL-~h-Lp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL~---~-Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 248 AAYLLSRI-YP-LIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFVE---D-KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HHHHHHHH-TT-TSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGCC---C-HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHH-Hh-CChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHHH---H-HHHHHHHHHhhcCCcccHHHHHH
Confidence 99999999 54 5665 455666654444433 4667888888887 44332 0 1110 0011111
Q ss_pred --HH-----HHhHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--CchhhHHHHHH
Q psy13179 195 --SM-----CLQFSQIFTLCQFVLDNSSN-ASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLK 264 (352)
Q Consensus 195 --~l-----~~~~~~i~~l~~~iL~~~~~-~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~ 264 (352)
.+ .+..+.++..+...|.+..+ ..-+..++..+..+++.-+ ..-..+.+++.+ +-|+ ..+++|.++++
T Consensus 320 AetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~a~~dp~LVPRL-~PFLRHtITSVR~AVL~ 397 (800)
T 3oc3_A 320 AELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-ELSIPPERLKDI-FPCFTSPVPEVRTSILN 397 (800)
T ss_dssp HHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-TCCCCSGGGGGT-GGGGTCSSHHHHHHHHH
T ss_pred HHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-ccccChHHHHHH-HhhhcCCcHHHHHHHHH
Confidence 11 12356677777777765321 1123333444444433221 222234566665 4555 46899999999
Q ss_pred HHHHHH
Q psy13179 265 CLTEIA 270 (352)
Q Consensus 265 cL~ei~ 270 (352)
+|..++
T Consensus 398 TL~tfL 403 (800)
T 3oc3_A 398 MVKNLS 403 (800)
T ss_dssp HTTTCC
T ss_pred HHHHHH
Confidence 997776
No 79
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=43.34 E-value=2.4e+02 Score=27.37 Aligned_cols=189 Identities=8% Similarity=0.003 Sum_probs=103.6
Q ss_pred ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHH
Q psy13179 56 DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIK-KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQ 134 (352)
Q Consensus 56 ~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik-~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~ 134 (352)
++...+..++..+....++.-++.+|.+.-. .++.|..+. ...+..+.....+ .+..++...+.++..
T Consensus 182 g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~------~~~~~~~l~~~g~l~~L~~ll~~-----~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV------CSSNKPAIVEAGGMQALGLHLTD-----PSQRLVQNCLWTLRN 250 (644)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHTT------CTTHHHHHHHTTHHHHHHTTTTC-----SCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHcCChHHHHHHHHHHHHHHhc------CcccHHHHHHCCCHHHHHHHHhc-----CCHHHHHHHHHHHHH
Confidence 3445555556555455666666666666432 233344433 2345555554332 245566777778887
Q ss_pred HHHhHcCC-CcchhHHHHHHhcccCh-hhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy13179 135 VLKREWPK-NWQSFIPDIVGASKTNE-SLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLD 212 (352)
Q Consensus 135 I~~~~~P~-~Wp~fi~~l~~~~~~~~-~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~ 212 (352)
+....-+. .-...++.+++.+.++. ...+....+|..|+.. .... +..+.+. ..+..+..+|.
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~---------~~~~----~~~v~~~--g~v~~Lv~lL~ 315 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN---------NYKN----KMMVCQV--GGIEALVRTVL 315 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---------CHHH----HHHHHHT--THHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---------CHHH----HHHHHHc--CCHHHHHHHHH
Confidence 76542111 12357788888876543 4555667777766531 1111 1122211 12333344444
Q ss_pred cCC-ChHHHHHHHHHHHhccccCcch-----hhcccchHHHHHHhhcC---chhhHHHHHHHHHHHHh
Q psy13179 213 NSS-NASLVGATLETLLRFLNWIPLG-----YIFETNLITTLIEKFLN---VPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 213 ~~~-~~~l~~~~L~~l~~~l~Wi~~~-----~i~~~~ll~~l~~~~l~---~~~~~~~al~cL~ei~~ 271 (352)
..+ .+.+...++.++..+..--+.+ .+.+...++.+ ..++. ++.++..|+.+|..+..
T Consensus 316 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L-~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV-VKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHH-HHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHH-HHHhCccCchHHHHHHHHHHHHHcc
Confidence 433 3688888999998875422211 13444567776 45554 35789999999988874
No 80
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=41.74 E-value=2.2e+02 Score=26.41 Aligned_cols=189 Identities=8% Similarity=-0.002 Sum_probs=100.5
Q ss_pred ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHH-HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHH
Q psy13179 56 DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGI-KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQ 134 (352)
Q Consensus 56 ~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i-k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~ 134 (352)
++......++..+.+...+.-++.+|.+.-. .++.+..+ +...+..+.....+ .++.++...+.++..
T Consensus 185 ~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~~~~L~~ll~~-----~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 185 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV------CSSNKPAIVEAGGMQALGLHLTD-----PSQRLVQNCLWTLRN 253 (529)
T ss_dssp THHHHHHHHHHHCCCHHHHHHHHHHHHHHTT------STTHHHHHHHTTHHHHHHTTTTS-----SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCChHHHHHHHHHHHHHHhc------CcccHHHHHHCCCHHHHHHHHhC-----CChHHHHHHHHHHHH
Confidence 3444444455444444445555555554331 22333333 23455555554332 245566677777877
Q ss_pred HHHhHcCC-CcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy13179 135 VLKREWPK-NWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLD 212 (352)
Q Consensus 135 I~~~~~P~-~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~ 212 (352)
+....-+. .-...++.+++.+.++ +........+|..|+.. . ...+ +.+.+. ..+..+..+|.
T Consensus 254 l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~------~--~~~~-----~~~~~~--~~v~~L~~ll~ 318 (529)
T 1jdh_A 254 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN------N--YKNK-----MMVCQV--GGIEALVRTVL 318 (529)
T ss_dssp HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT------C--HHHH-----HHHHHT--THHHHHHHHHH
T ss_pred HhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC------C--HHHH-----HHHHHc--CChHHHHHHHH
Confidence 77543111 1235778888887654 34556666777766431 0 1112 112211 12233333444
Q ss_pred c-CCChHHHHHHHHHHHhccccCcc-----hhhcccchHHHHHHhhcCc---hhhHHHHHHHHHHHHh
Q psy13179 213 N-SSNASLVGATLETLLRFLNWIPL-----GYIFETNLITTLIEKFLNV---PLFRNVTLKCLTEIAA 271 (352)
Q Consensus 213 ~-~~~~~l~~~~L~~l~~~l~Wi~~-----~~i~~~~ll~~l~~~~l~~---~~~~~~al~cL~ei~~ 271 (352)
. ..++.+...++.++..+..--+- ..+.+.+.++.+ ..++.+ +.++..++.+|..+..
T Consensus 319 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L-~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV-VKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHH-HHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHH-HHHhccccchHHHHHHHHHHHHHhc
Confidence 3 33478888899999887543222 134455667776 455532 4788999999988875
No 81
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=39.96 E-value=2.3e+02 Score=26.16 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcC-CChH--------HHHHHHhccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEH-PDAW--------TRVDTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~-p~~w--------~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
+|..-+.+++..+.++|+.+|.....+|-.+-.. .+-- ..............---=.+.++...|+.-=..
T Consensus 171 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~P 250 (392)
T 2jak_A 171 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 250 (392)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCC
Confidence 5777788888888888888888888877543221 1111 111111111111111112344555555542235
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHh
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKL 171 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~ 171 (352)
+.+|.+..+.+.++.+... ..-..|-.+++.+++.++.+| |.-=...+.-++..+..+...-+ ..+|..
T Consensus 251 LKeehk~Fl~~vLlPLhk~--------~~l~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~WP~tns~Ke--vlFL~e 319 (392)
T 2jak_A 251 LKEEHKIFLLKVLLPLHKV--------KSLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYWPKTHSPKE--VMFLNE 319 (392)
T ss_dssp CCHHHHHHHHHTTGGGGTS--------GGGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHSSCSSCCTTH--HHHHHH
T ss_pred CcHHHHHHHHHHhHhhccC--------CcHHHhHHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCchHH--HHHHHH
Confidence 6666666555555544432 123345567888877777765 33223344444444432221111 123333
Q ss_pred HHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHH
Q psy13179 172 LSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATL 224 (352)
Q Consensus 172 L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L 224 (352)
| ||+.+.- +. ..+......+|..+..++.. .+-++...||
T Consensus 320 l-eeiLe~~----~~-------~~f~~i~~~lF~~la~ci~S-~hfqVAErAL 359 (392)
T 2jak_A 320 L-EEILDVI----EP-------SEFVKIMEPLFRQLAKCVSS-PHFQVAERAL 359 (392)
T ss_dssp H-HHHHHTC----CH-------HHHHHHHHHHHHHHHHHHTC-SSHHHHHHHH
T ss_pred H-HHHHHhC----CH-------HHHHHHHHHHHHHHHHHHcC-CcHHHHHHHH
Confidence 2 3344321 11 11333334455555555543 5566766665
No 82
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=39.47 E-value=3.1e+02 Score=27.54 Aligned_cols=189 Identities=8% Similarity=-0.002 Sum_probs=101.7
Q ss_pred ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHH-HHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHH
Q psy13179 56 DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGI-KKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQ 134 (352)
Q Consensus 56 ~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~i-k~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~ 134 (352)
++...+..++..+.....+..++.+|.+.-. .++.+..+ +..++..+.....+ .+..++...+.++..
T Consensus 318 ~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~------~~~~~~~i~~~g~l~~Ll~lL~~-----~~~~~~~~a~~~L~~ 386 (780)
T 2z6g_A 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV------CSSNKPAIVEAGGMQALGLHLTD-----PSQRLVQNCLWTLRN 386 (780)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHT------STTHHHHHHHTTHHHHHGGGTTC-----SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc------ChHHHHHHHHhchHHHHHHHHcC-----CchHHHHHHHHHHHH
Confidence 4455555556554444555556666665432 12233333 34455555554332 234566777888888
Q ss_pred HHHhHcCC-CcchhHHHHHHhcccC-hhhhhHHHHHHHhHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy13179 135 VLKREWPK-NWQSFIPDIVGASKTN-ESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLD 212 (352)
Q Consensus 135 I~~~~~P~-~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~ 212 (352)
+....-+. .-...++.+++.+... .........+|..|+.. . ...| ..+... ..+..+..+|.
T Consensus 387 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~-----~---~~~~-----~~i~~~--g~i~~Lv~lL~ 451 (780)
T 2z6g_A 387 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-----N---YKNK-----MMVCQV--GGIEALVRTVL 451 (780)
T ss_dssp HHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-----C---HHHH-----HHHHTT--THHHHHHHHHH
T ss_pred HhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-----C---HHHH-----HHHHHC--CCHHHHHHHHH
Confidence 87654221 2346788888887654 34555666777766421 0 1111 112211 12233333444
Q ss_pred cCC-ChHHHHHHHHHHHhccccCcc-----hhhcccchHHHHHHhhcC--c-hhhHHHHHHHHHHHHh
Q psy13179 213 NSS-NASLVGATLETLLRFLNWIPL-----GYIFETNLITTLIEKFLN--V-PLFRNVTLKCLTEIAA 271 (352)
Q Consensus 213 ~~~-~~~l~~~~L~~l~~~l~Wi~~-----~~i~~~~ll~~l~~~~l~--~-~~~~~~al~cL~ei~~ 271 (352)
... .+.+...++.+++....--+- ..+.....++.| ...+. + +.++..|+.+|..+..
T Consensus 452 ~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L-~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV-VKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHH-HHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHH-HHHhcCCChHHHHHHHHHHHHHHhc
Confidence 323 347888899999877432221 133445567766 45553 2 4789999999998874
No 83
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=39.24 E-value=59 Score=34.87 Aligned_cols=59 Identities=8% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhcC-------------chhhHHHHHHHHHHHHhc
Q psy13179 214 SSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLN-------------VPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 214 ~~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l~-------------~~~~~~~al~cL~ei~~~ 272 (352)
..+|.+...++.|+++|..|..-..-+-+..++.++..+.. +..+|..|+.||..++..
T Consensus 543 ~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~ 614 (1204)
T 3a6p_A 543 TKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRD 614 (1204)
T ss_dssp CSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 35788888999999999999752111112234433222211 237889999999988754
No 84
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=39.17 E-value=3.3e+02 Score=27.77 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=109.2
Q ss_pred HHHhcCChHhHHHHHHHHHHHhc--CCC----------hHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHH
Q psy13179 31 ECMYTGMGVEQKAAQEVLTALKE--HPD----------AWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98 (352)
Q Consensus 31 ~~~~~~~~~~r~~A~~~L~~fk~--~p~----------~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~ 98 (352)
..+.+++...|+.|-..|.++-. +|+ +......+|....+...++-|+..|.+.... +++.+.
T Consensus 543 ~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-----~d~~~~ 617 (810)
T 3now_A 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-----NESVRQ 617 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-----CHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-----CHHHHH
Confidence 33444444445555555554322 121 2233344454333445567777777776542 444443
Q ss_pred HHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc------chhHHHHHHhcccCh-hhhhHHHHHHH
Q psy13179 99 GIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW------QSFIPDIVGASKTNE-SLCQNNMVILK 170 (352)
Q Consensus 99 ~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W------p~fi~~l~~~~~~~~-~~~~~~l~iL~ 170 (352)
.+-+ ..+..+...-. ..+..++...+.++..|+..+ +.- .+.++-++.++.+++ .....+...|.
T Consensus 618 ~Ii~aG~l~~Lv~LL~-----s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 618 RIIKEQGVSKIEYYLM-----EDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHHTTHHHHHHHHHH-----SCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHc-----CCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3332 22233322210 123445566677777766532 111 123444444444322 23333445555
Q ss_pred hHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCc--chhhcccchHHHH
Q psy13179 171 LLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIP--LGYIFETNLITTL 248 (352)
Q Consensus 171 ~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~--~~~i~~~~ll~~l 248 (352)
.|+.. + . ...+..+.. ...+..+..+|. +++.++.+.++.++....+--+ ...+.+.+.++.|
T Consensus 691 nLt~~----s-----~---~~~~~ii~~--~g~I~~Lv~LL~-s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L 755 (810)
T 3now_A 691 IITSV----S-----V---KCCEKILAI--ASWLDILHTLIA-NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755 (810)
T ss_dssp HHHHH----C-----H---HHHHHHHTS--TTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHH
T ss_pred HHhCC----C-----H---HHHHHHHHH--cCCHHHHHHHHC-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 54431 0 0 011222220 122233344444 4678899999998888765322 2456677888887
Q ss_pred HHhhcC-----chhhHHHHHHHHHHHHhccC
Q psy13179 249 IEKFLN-----VPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 249 ~~~~l~-----~~~~~~~al~cL~ei~~~~~ 274 (352)
..++. ++.+.+.|+++|..++.-+.
T Consensus 756 -~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 756 -SGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp -TTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 56662 46889999999988887654
No 85
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=33.93 E-value=41 Score=35.43 Aligned_cols=72 Identities=8% Similarity=0.114 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcC----CChHHHHHHHHHHHhccccCcchhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHhc
Q psy13179 200 FSQIFTLCQFVLDNS----SNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAAV 272 (352)
Q Consensus 200 ~~~i~~l~~~iL~~~----~~~~l~~~~L~~l~~~l~Wi~~~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~~ 272 (352)
+++++..+..+++.. ..+.+...+.-++++|-.|+....-+-+..++.+ +..+ +.|.+...|+.+|..++..
T Consensus 493 l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L-~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 493 VVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL-FEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 456666666655431 1223344677999999999853221223455555 3444 3468999999999999875
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=33.88 E-value=4.3e+02 Score=27.60 Aligned_cols=189 Identities=11% Similarity=0.129 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCChHh-HHHHHHHHHHHhcC----CChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHH
Q psy13179 23 ITLLDNIVECMYTGMGVE-QKAAQEVLTALKEH----PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQC 97 (352)
Q Consensus 23 i~~L~~~v~~~~~~~~~~-r~~A~~~L~~fk~~----p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k 97 (352)
+..|+..++.+...+.++ +..|...-..++.. .-.|.....+.....+-..- -++...-..+.++-..-++-+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e- 90 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVE- 90 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTH-
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcc-
Confidence 344555555555444444 44555655556643 22366665554322111111 455555555554443322222
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccCh--hhhhHHHHHHHhHHHH
Q psy13179 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNE--SLCQNNMVILKLLSEE 175 (352)
Q Consensus 98 ~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~--~~~~~~l~iL~~L~eE 175 (352)
..+- .++..+.....| ..+.+++....++..|++.-=|.-=+.+++.++..+.++. .....+|.++..|.+.
T Consensus 91 ~~~~-~~~~~~~~~~~d-----k~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 91 PYIV-QLVPAICTNAGN-----KDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHH-TTHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 1121 234555544332 3455666666677778877656555778888888775543 2334567777776652
Q ss_pred hhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccccCcc
Q psy13179 176 VFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPL 236 (352)
Q Consensus 176 v~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi~~ 236 (352)
. .+.+...+|.|+..+...+-. ..+++.+++.+++..++.-++-
T Consensus 165 ~----------------~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 165 A----------------KDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp S----------------HHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCC
T ss_pred h----------------HHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCC
Confidence 1 234666778888877766643 4678888888888888776643
No 87
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=33.70 E-value=2.9e+02 Score=25.55 Aligned_cols=228 Identities=13% Similarity=0.102 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCC-C-------hH-HHHHH-HhccCCchHHHHHHHHHHHHHHhhccC
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHP-D-------AW-TRVDT-ILEYSSNQQTKFYALQILEQVIKTRWK 90 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p-~-------~w-~~~~~-iL~~s~~~~vrffal~~L~~~I~~~W~ 90 (352)
+|-.-+-+++..+-++|+.+|.....+|-.+=..= + +. .+... +.+... .+---=.+.++...|+--=.
T Consensus 126 id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~-~~GIaeLLeilgsIinGfa~ 204 (403)
T 3fga_B 126 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEH-HNGIAELLEILGSIINGFAL 204 (403)
T ss_dssp SCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCC-CTTHHHHHHHHHHHHHHCCS
T ss_pred cCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCccc-CCCHHHHHHHHHHHHcccCC
Confidence 56667788888787888888888777776532210 0 00 01111 111111 00000123444445543223
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHH
Q psy13179 91 ALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILK 170 (352)
Q Consensus 91 ~l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~ 170 (352)
.+.+|.+..+.+.++.+... ..-..|-.+++.+++..+.+| |.-=...+..++..+..+.+.-+ ..+|.
T Consensus 205 PLkeehk~fl~~vLlPLHk~--------~~~~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~WP~tns~Ke--vlFL~ 273 (403)
T 3fga_B 205 PLKEEHKIFLLKVLLPLHKV--------KSLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYWPKTHSPKE--VMFLN 273 (403)
T ss_dssp SCCHHHHHHHHHTTTGGGGS--------TTGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHTCCSSCHHHH--HHHHH
T ss_pred CchHHHHHHHHHHHHHHHcC--------CcchhhHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCcHHH--HHHHH
Confidence 45666655555555444432 122345567777777777665 33223344444444433221111 12333
Q ss_pred hHHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHh--ccccCc-chhhcccchHHH
Q psy13179 171 LLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLR--FLNWIP-LGYIFETNLITT 247 (352)
Q Consensus 171 ~L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~--~l~Wi~-~~~i~~~~ll~~ 247 (352)
.+ +|+.+. +++. .+......+|..+..++.. .+-++...||..... +++.+. -...+-|-+++.
T Consensus 274 El-e~iLe~----~~~~-------~f~~i~~~lf~~la~ci~S-~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~ 340 (403)
T 3fga_B 274 EL-EEILDV----IEPS-------EFVKIMEPLFRQLAKCVSS-PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPS 340 (403)
T ss_dssp HH-HHHHTT----CCHH-------HHHHHHHHHHHHHHHHHTC-SCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHH
T ss_pred HH-HHHHHh----CCHH-------HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHH
Confidence 22 233332 1111 1222223344444444432 345556666555532 233321 111222334454
Q ss_pred HHHhhc---CchhhHHHHHHHHHHHHhccC
Q psy13179 248 LIEKFL---NVPLFRNVTLKCLTEIAAVSG 274 (352)
Q Consensus 248 l~~~~l---~~~~~~~~al~cL~ei~~~~~ 274 (352)
+ .... -++.++..|..++..+.....
T Consensus 341 L-~~~~~~HWn~~v~~l~~~vlk~l~e~d~ 369 (403)
T 3fga_B 341 L-YRNSKTHWNKTIHGLIYNALKLFMEMNQ 369 (403)
T ss_dssp H-HHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred H-HHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence 4 2222 256778888888877776665
No 88
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=33.59 E-value=1.9e+02 Score=24.63 Aligned_cols=119 Identities=7% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHH-HhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhcc---CCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy13179 26 LDNIVEC-MYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEY---SSNQQTKFYALQILEQVIKTRWKALPREQCDGIK 101 (352)
Q Consensus 26 L~~~v~~-~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~---s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik 101 (352)
+..+++- +-++....|..|.+.|..+-.....-..+...+.. +.++.++.-++..|...+... ....-.-...-
T Consensus 104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f--g~~~~~~k~~l 181 (278)
T 4ffb_C 104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF--GLTNVNVQTFL 181 (278)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH--TTTTCCHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--CCCcCCchhHH
Q ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCc---chhHHHH
Q psy13179 102 KYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNW---QSFIPDI 151 (352)
Q Consensus 102 ~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~W---p~fi~~l 151 (352)
..++..+.....+ .++.+++....+++.+.+.-.+..+ +.+++++
T Consensus 182 ~~i~~~l~k~l~d-----~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~l 229 (278)
T 4ffb_C 182 PELLKHVPQLAGH-----GDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKL 229 (278)
T ss_dssp HHHGGGHHHHHTC-----SSHHHHHHHHHHHHHHHTC-----------CTTSS
T ss_pred HHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcC
No 89
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=33.12 E-value=3.1e+02 Score=25.74 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcC-CChHHHH--------HHHhccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEH-PDAWTRV--------DTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 21 ~di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~-p~~w~~~--------~~iL~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
+|-.-+.+++..+.++|+.+|.....+|-.+-.. .+--... ...+..+...+---=.+.++...|+.-=-.
T Consensus 159 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~P 238 (449)
T 2npp_B 159 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 238 (449)
T ss_dssp SCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCC
Confidence 5777888888888888888888888887654332 1111111 111111111110001234444444432224
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChhhhhHHHHHHHh
Q psy13179 92 LPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKL 171 (352)
Q Consensus 92 l~~e~k~~ik~~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~~~~~~l~iL~~ 171 (352)
+.+|.+..+.+.++.+... ..-..|-.+++.+++.++.+| |.-=...+.-++..+..+...-+ ..+|..
T Consensus 239 LKeehk~fl~~vLlPLhk~--------~~l~~y~~qL~ycv~qf~eKD-p~L~~~vi~~LLk~WP~tns~Ke--vlFL~e 307 (449)
T 2npp_B 239 LKEEHKIFLLKVLLPLHKV--------KSLSVYHPQLAYCVVQFLEKD-STLTEPVVMALLKYWPKTHSPKE--VMFLNE 307 (449)
T ss_dssp CCHHHHHHHHHTTGGGGGS--------SCGGGTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHTCCSSCHHHH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcc--------chhHHhHHHHHHHHHHHHhcC-cHhHHHHHHHHHHhCCCCCchHH--HHHHHH
Confidence 5566555555444443322 122345567777877777665 32222344444444433222111 123333
Q ss_pred HHHHhhccCCCcccHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCChHHHHHHHHHHHh--ccccCc-chhhcccchHHHH
Q psy13179 172 LSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLR--FLNWIP-LGYIFETNLITTL 248 (352)
Q Consensus 172 L~eEv~~~~~~~l~~~r~~~lk~~l~~~~~~i~~l~~~iL~~~~~~~l~~~~L~~l~~--~l~Wi~-~~~i~~~~ll~~l 248 (352)
| ||+.+.- ++. .+......+|..+..++.. .+-++...||..... +++++. -...+-+-+++.+
T Consensus 308 l-eeile~~----~~~-------ef~~i~~~lF~~la~ci~S-~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L 374 (449)
T 2npp_B 308 L-EEILDVI----EPS-------EFVKIMEPLFRQLAKCVSS-PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSL 374 (449)
T ss_dssp H-HHHHTTC----CHH-------HHHHHHHHHHHHHHHHHTC-SCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred H-HHHHHhC----CHH-------HHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHH
Confidence 2 3444321 111 1222333455555555543 455666666655542 344432 1122223355544
Q ss_pred H---HhhcCchhhHHHHHHHHHHHHhcc
Q psy13179 249 I---EKFLNVPLFRNVTLKCLTEIAAVS 273 (352)
Q Consensus 249 ~---~~~l~~~~~~~~al~cL~ei~~~~ 273 (352)
. ..+| ++.++..|..++..+....
T Consensus 375 ~~~s~~HW-n~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 375 YRNSKTHW-NKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp TSCTTCCS-STTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHHHC
Confidence 1 1222 4678888888887776665
No 90
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=32.04 E-value=3.2e+02 Score=25.57 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccccC-cc---hhhcccchHHHHHHhhc--CchhhHHHHHHHHHHHHh
Q psy13179 205 TLCQFVLDNSSNASLVGATLETLLRFLNWI-PL---GYIFETNLITTLIEKFL--NVPLFRNVTLKCLTEIAA 271 (352)
Q Consensus 205 ~l~~~iL~~~~~~~l~~~~L~~l~~~l~Wi-~~---~~i~~~~ll~~l~~~~l--~~~~~~~~al~cL~ei~~ 271 (352)
..+..+|. ++++++...+..++.. ++|- +. ..+.+.+-++.|+..++ .++.++..|+.+|..+..
T Consensus 246 p~LV~LL~-s~~~~v~~~A~~aL~n-Ls~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 246 RALVAQLK-SESEDLQQVIASVLRN-LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHGGG-CSCHHHHHHHHHHHHH-HTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHH-HhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 33344444 4677888887777754 4553 21 34555566666643333 357888899999988886
No 91
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae}
Probab=29.07 E-value=2.8e+02 Score=23.85 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHhc--C--ChHhHHHHHHHHHH-----------HhcCC-ChHHHHHHHhccC
Q psy13179 20 KLDITLLDNIVECMYT--G--MGVEQKAAQEVLTA-----------LKEHP-DAWTRVDTILEYS 68 (352)
Q Consensus 20 ~~di~~L~~~v~~~~~--~--~~~~r~~A~~~L~~-----------fk~~p-~~w~~~~~iL~~s 68 (352)
-+||+.++.-+..... + +++.+.+|.+.|+. |- .| +-|..|+.|+.-+
T Consensus 15 ~LDVA~IQ~~IL~~l~~d~ri~~e~~~~~i~~Ln~~Ll~iSeLyndyA-dP~~l~EicL~I~h~s 78 (252)
T 3i5q_B 15 ACEVAGIQGDILSLVYTDARIDSAIKDELIKTLDGKILSTSELFNDFA-VPLSYHEIALFIFKIA 78 (252)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHCCCCHHHHHHHTT-TTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCCcCcCHHHHHHHHh-hhcccHHHHHHHhHHh
Confidence 3588888766644332 2 34556667666654 32 45 7899999998544
No 92
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=27.29 E-value=3.7e+02 Score=24.76 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCChHhHHHHHHHHHHHhc-CCChH---------HHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHH
Q psy13179 26 LDNIVECMYTGMGVEQKAAQEVLTALKE-HPDAW---------TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95 (352)
Q Consensus 26 L~~~v~~~~~~~~~~r~~A~~~L~~fk~-~p~~w---------~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e 95 (352)
++.+|..+.+++.+.|..|-..|..+-. +++.+ .....+|. +.++.+++.|+.+|.+.... +++
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~-----~~~ 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFR-----STT 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSS-----CHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC-----CHH
Confidence 4555666667776777777777777643 33434 44445555 57889999999999997752 567
Q ss_pred HHHHHHH-HHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcc----hhHHHHHHhc
Q psy13179 96 QCDGIKK-YIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQ----SFIPDIVGAS 155 (352)
Q Consensus 96 ~k~~ik~-~ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp----~fi~~l~~~~ 155 (352)
.|..+.+ -.+..+.+.-.. ..+..+....+.+|..+... ++.-. ..++-+++.+
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~----~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll 136 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRR----TGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRV 136 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTT----CCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhh----CCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHH
Confidence 7777743 233333332210 12455667777888888865 33222 4566666666
No 93
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=27.12 E-value=4.4e+02 Score=25.58 Aligned_cols=201 Identities=11% Similarity=0.060 Sum_probs=99.3
Q ss_pred CChHhHHHHHHHHHHHhcC-C--ChHHHHH-HH---hccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q psy13179 36 GMGVEQKAAQEVLTALKEH-P--DAWTRVD-TI---LEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLI 108 (352)
Q Consensus 36 ~~~~~r~~A~~~L~~fk~~-p--~~w~~~~-~i---L~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l 108 (352)
++++.|-.|-..|.++-.. | ++...+. .+ |..+.+..+|.-++.+|-..+. ++....|=..+.+++
T Consensus 341 ~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-------~~Nv~~Iv~eL~~yl 413 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-------RSNAQQIVAEMLSYL 413 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-------hhhHHHHHHHHHHHH
Confidence 4455566666666665543 2 1222111 12 2224566777777777666543 344445555556665
Q ss_pred HHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccChh-hhhHHHHHHHhHHHHhhccCCCcccHH
Q psy13179 109 IKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNES-LCQNNMVILKLLSEEVFDFSGGQLTQA 187 (352)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~~~-~~~~~l~iL~~L~eEv~~~~~~~l~~~ 187 (352)
.. .+..++..+...+..++.+ ||.....+++-+++.+....+ ...-....+..+... .. .+
T Consensus 414 ~~---------~d~~~~~~~v~~I~~la~k-~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~---~~--~~--- 475 (621)
T 2vgl_A 414 ET---------ADYSIREEIVLKVAILAEK-YAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN---RD--DV--- 475 (621)
T ss_dssp HH---------CCHHHHHHHHHHHHHHHHH-HCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG---GC--SC---
T ss_pred Hh---------cCHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC---Ch--hH---
Confidence 43 2455666677777766655 565555566666665543221 111111122211111 10 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhccccCcch-hhcccchHHHHHHhhc-CchhhHHHHHH
Q psy13179 188 KAKHLKDSMCLQFSQIFTLCQFVLDNS-SNASLVGATLETLLRFLNWIPLG-YIFETNLITTLIEKFL-NVPLFRNVTLK 264 (352)
Q Consensus 188 r~~~lk~~l~~~~~~i~~l~~~iL~~~-~~~~l~~~~L~~l~~~l~Wi~~~-~i~~~~ll~~l~~~~l-~~~~~~~~al~ 264 (352)
|.. +..-+...+... ....+++.+.=+++.|...++-. .+...+++..+...+. .++.++..++.
T Consensus 476 ~~~------------~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lt 543 (621)
T 2vgl_A 476 QGY------------AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLS 543 (621)
T ss_dssp HHH------------HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHH------------HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 111 111122333332 23467777778888885554321 1111144555433333 56789999999
Q ss_pred HHHHHHhcc
Q psy13179 265 CLTEIAAVS 273 (352)
Q Consensus 265 cL~ei~~~~ 273 (352)
++.-+..+.
T Consensus 544 a~~Kl~~~~ 552 (621)
T 2vgl_A 544 TYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 998887654
No 94
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=27.00 E-value=65 Score=23.93 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhcCChHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHHHHHHHHHH
Q psy13179 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQ 83 (352)
Q Consensus 22 di~~L~~~v~~~~~~~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~ 83 (352)
....+..++..+.+++...|..|-..|.++.. + +...+...|. +.++.+|..|+..|-+
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-~-~~~~L~~~L~-d~~~~vR~~A~~aL~~ 68 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-E-AFEPLLESLS-NEDWRIRGAAAWIIGN 68 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-T-THHHHHHGGG-CSCHHHHHHHHHHHGG
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-h-HHHHHHHHHc-CCCHHHHHHHHHHHHh
Confidence 33445555666666666666666666655433 2 2455555565 4677888888777643
No 95
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=25.08 E-value=1.1e+02 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.6
Q ss_pred hccCCCCHHHHHHHHHHHH
Q psy13179 87 TRWKALPREQCDGIKKYIV 105 (352)
Q Consensus 87 ~~W~~l~~e~k~~ik~~ll 105 (352)
..|..+|++.|+.+|++.-
T Consensus 65 ~~w~~l~~~~K~~L~~~~~ 83 (93)
T 3mab_A 65 IRWHGLDEAKKIELKKFHQ 83 (93)
T ss_dssp SCGGGSCHHHHHHHHHHHH
T ss_pred CcHHHCCHHHHHHHHHHHH
Confidence 6799999999999998753
No 96
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=22.26 E-value=4.3e+02 Score=23.76 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChHhHHHHHHHHHH-HhcCCChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q psy13179 25 LLDNIVECMYTGMGVEQKAAQEVLTA-LKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKY 103 (352)
Q Consensus 25 ~L~~~v~~~~~~~~~~r~~A~~~L~~-fk~~p~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ 103 (352)
..+.+++.+++++...++.|-.-|.+ |+++++... +.+.+ -|+..|-+.+... .....++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~---EFI~~--------~GL~~Li~vi~~~--------~gN~q~Y 179 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVP---EFVHS--------EGLSCLIRVGAAA--------DHNYQSY 179 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHH---HHHHT--------THHHHHHHHHTTS--------CHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHH---HHHHh--------ccHHHHHHHHHhc--------ChHHHHH
Confidence 45667777777777777777777777 765554322 33333 3666776666542 2223444
Q ss_pred HHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHhHcCCCcchhHHHHHHhcccC-hhhhhHHHHHHHhHHH
Q psy13179 104 IVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTN-ESLCQNNMVILKLLSE 174 (352)
Q Consensus 104 ll~~l~~~~~~~~~~~~~~~~~~kl~~~l~~I~~~~~P~~Wp~fi~~l~~~~~~~-~~~~~~~l~iL~~L~e 174 (352)
++..+.+.-. +..-+..++. +|+|+..+.+...+. ..++..+|.+|..+++
T Consensus 180 ~L~AL~~LM~----------~v~Gm~gvvs----------~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~ 231 (339)
T 3dad_A 180 ILRALGQLML----------FVDGMLGVVA----------HSDTIQWLYTLCASLSRLVVKTALKLLLVFVE 231 (339)
T ss_dssp HHHHHHHHTT----------SHHHHHHHHH----------CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------ccccccchhC----------CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHc
Confidence 4444443210 1111111222 678888888888753 3567778888887765
No 97
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=22.12 E-value=2e+02 Score=21.15 Aligned_cols=94 Identities=7% Similarity=0.067 Sum_probs=53.1
Q ss_pred hHhHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcC
Q psy13179 38 GVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKF----YALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSS 113 (352)
Q Consensus 38 ~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrf----fal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~ 113 (352)
+++.+....+|.++.+.+.+|......=...-+.+-.. ..+.+++.++..+--.-..+-...++--.-+...-.
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN-- 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN-- 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC--
Confidence 34566788899999999988875433211111122222 368899999987544434445555555544444321
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhH
Q psy13179 114 TPETLEREKMYLNKLNMILVQVLKRE 139 (352)
Q Consensus 114 ~~~~~~~~~~~~~kl~~~l~~I~~~~ 139 (352)
.+.+.+.+.|..+-..+...
T Consensus 90 ------~~~s~~~~~A~~L~~~f~~~ 109 (117)
T 3g0l_A 90 ------EDDSDIGRAGHNMRKYFEKK 109 (117)
T ss_dssp ------CSSSHHHHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHHHH
Confidence 22334556666666665554
No 98
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=21.53 E-value=96 Score=30.45 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=46.4
Q ss_pred HhcCChHhHHHHHHHHHHHhcC-C--ChHHHHHHHhccCCchHHHHHHHHHHHHHHhhccCC
Q psy13179 33 MYTGMGVEQKAAQEVLTALKEH-P--DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (352)
Q Consensus 33 ~~~~~~~~r~~A~~~L~~fk~~-p--~~w~~~~~iL~~s~~~~vrffal~~L~~~I~~~W~~ 91 (352)
.|+|+.+.|+.|...+..+-.. | +-+.+...++.++..+.++=++.+.+|+-|...|..
T Consensus 375 ~~~P~~~lR~~a~~vl~~~I~~~~~e~R~~iL~~LL~~~~~~~v~~~lI~~~KdeI~~al~~ 436 (596)
T 4f52_E 375 TLCPIETLRKKSLAMLQLYINKLDSQGKYTLFRCLLNTSNHSGVEAFIIQNIKNQIDMSLKR 436 (596)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHCCcHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 4678888899988888875542 3 335566667888889999999999999999998875
No 99
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=21.18 E-value=18 Score=18.88 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=6.9
Q ss_pred cCCCc-chhHHH
Q psy13179 140 WPKNW-QSFIPD 150 (352)
Q Consensus 140 ~P~~W-p~fi~~ 150 (352)
||-+| |+|+.|
T Consensus 7 ypgqynpsfisd 18 (26)
T 3u7d_B 7 FPGQYNPSFISD 18 (26)
T ss_pred ccCccCcccccC
Confidence 67777 566544
No 100
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=20.65 E-value=3.9e+02 Score=26.68 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=44.7
Q ss_pred ChHhHHHHHHHHHHHhcCCChHHHHHHHhccC-CchHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHh
Q psy13179 37 MGVEQKAAQEVLTALKEHPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKT 111 (352)
Q Consensus 37 ~~~~r~~A~~~L~~fk~~p~~w~~~~~iL~~s-~~~~vrffal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~ 111 (352)
+.++.++|.+.|.++ .|=....++++|... .++.||-||...|+. .++++ +-.||++++...
T Consensus 90 ~~~e~~~a~~lL~~W--~~~~~~dALeLL~~~f~~~~VR~yAV~~L~~--------~~de~---L~~YLlQLVQAL 152 (696)
T 2x6h_A 90 LEDEVTQALWMLANW--APMDVEDALELLSPTFTHPQVRKYAVSRLAQ--------APDED---LLLYLLQLVQAL 152 (696)
T ss_dssp CHHHHHHHHHHHHHS--CCCCHHHHHHHHSTTCCCHHHHHHHHHHHHH--------SCHHH---HHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHhcC--CCCCHHHHHHHhcccCCCHHHHHHHHHHHHh--------CChHH---HHHHHHHHHHHH
Confidence 455778889988888 355567778888653 578999999988877 35544 556777766543
No 101
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=20.12 E-value=1.1e+02 Score=21.84 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=16.4
Q ss_pred hccCCCCHHHHHHHHHHHH
Q psy13179 87 TRWKALPREQCDGIKKYIV 105 (352)
Q Consensus 87 ~~W~~l~~e~k~~ik~~ll 105 (352)
+.|..++++.|+.+++++=
T Consensus 65 ~~w~~l~~~~K~~L~~~~~ 83 (93)
T 3bqs_A 65 IRWHGLDEAKKIELKKFHQ 83 (93)
T ss_dssp SCGGGSCHHHHHHHHHHHH
T ss_pred CCHHHCCHHHHHHHHHHHH
Confidence 6799999999999988753
No 102
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=20.10 E-value=1.7e+02 Score=21.84 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhcCCChHHHHHHHhccCCchHHHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCc
Q psy13179 40 EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKF----YALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTP 115 (352)
Q Consensus 40 ~r~~A~~~L~~fk~~p~~w~~~~~iL~~s~~~~vrf----fal~~L~~~I~~~W~~l~~e~k~~ik~~ll~~l~~~~~~~ 115 (352)
..+....+|.++.+.+.+|......=...-+.+-.. ..+.+++.++..+--.-..+-...++.-.-+...-
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y----- 88 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY----- 88 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH-----
Confidence 456788899999999988864332211111122111 36889999998754433445555565554444432
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHcCC--Ccch
Q psy13179 116 ETLEREKMYLNKLNMILVQVLKREWPK--NWQS 146 (352)
Q Consensus 116 ~~~~~~~~~~~kl~~~l~~I~~~~~P~--~Wp~ 146 (352)
+++.+.+.+.|..+...+...|-+ .|.+
T Consensus 89 ---N~~~s~i~~~A~~L~~~f~~~~~~~p~~~~ 118 (121)
T 1e6i_A 89 ---NGENTSYYKYANRLEKFFNNKVKEIPEYSH 118 (121)
T ss_dssp ---SCTTSHHHHHHHHHHHHHHHHHHTSGGGGG
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHcccccc
Confidence 122334556666666666655432 4544
Done!