RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13179
(352 letters)
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor
[Nuclear structure / Intracellular trafficking and
secretion].
Length = 1053
Score = 361 bits (927), Expect = e-116
Identities = 147/340 (43%), Positives = 214/340 (62%), Gaps = 8/340 (2%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+L+F++ LDI LLD +V Y G G +Q+ AQ +LT +E PDAWT+ D IL S Q+
Sbjct: 4 ILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQS 63
Query: 74 KFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILV 133
K+ AL +L+++I T+WK LP GI+ Y+V L+I+ S + +++K LNKL++ LV
Sbjct: 64 KYIALSLLDKLITTKWKLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLV 123
Query: 134 QVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLK 193
Q+LK+EWP+NW +FIP+++ S+ + +C+NNM++LKLLSEEVFDFS Q+TQ K + LK
Sbjct: 124 QILKQEWPRNWPTFIPELINVSQISMEVCENNMIVLKLLSEEVFDFSAEQMTQVKKRLLK 183
Query: 194 DSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFL 253
+ M ++F QIF LC+ +L+ S + SL+ ATLE+LLRFL WIPL YIFETN+I ++E F
Sbjct: 184 NQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVLEHFN 243
Query: 254 NVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQM------MFPMDINIKQA 307
++P R TL CLTEI + EN Q P + +I +
Sbjct: 244 SMPDTRVATLSCLTEIVDL--GRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEV 301
Query: 308 YAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
Y EQ F+Q LA FL + + + SL+E + E +L
Sbjct: 302 YGGMDKNEQIFVQKLAQFLSSLYEVYISLLEAREMAENLL 341
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein. The sequences featured
in this family are similar to a region close to the
N-terminus of yeast exportin 1 (Xpo1, Crm1). This region
is found just C-terminal to an importin-beta N-terminal
domain (pfam03810) in many members of this family.
Exportin 1 is a nuclear export receptor that interacts
with leucine-rich nuclear export signal (NES) sequences,
and Ran-GTP, and is involved in translocation of
proteins out of the nucleus.
Length = 147
Score = 158 bits (403), Expect = 4e-48
Identities = 58/148 (39%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 121 EKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFS 180
K NKL + L ++ K+EWP NW +F PD+V ++ S C+ + ILK+L EE+FDFS
Sbjct: 1 PKFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFS 60
Query: 181 GGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSN--ASLVGATLETLLRFLNWIPLGY 238
LTQ + LKD + Q QI L +L+NS + + L+ ATL+ L +L+WIP+G
Sbjct: 61 RTPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLSWIPIGL 120
Query: 239 IFETNLITTLIEKFLNVPLFRNVTLKCL 266
I L+ L + L+ P R ++CL
Sbjct: 121 ILNDPLLNLLFQ-LLSDPDLREAAVECL 147
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain. Members of the
importin-beta (karyopherin-beta) family can bind and
transport cargo by themselves, or can form heterodimers
with importin-alpha. As part of a heterodimer,
importin-beta mediates interactions with the pore
complex, while importin-alpha acts as an adaptor protein
to bind the nuclear localisation signal (NLS) on the
cargo through the classical NLS import of proteins.
Importin-beta is a helicoidal molecule constructed from
19 HEAT repeats. Many nuclear pore proteins contain FG
sequence repeats that can bind to HEAT repeats within
importins.. which is important for importin-beta
mediated transport.
Length = 67
Score = 67.3 bits (165), Expect = 1e-14
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 44 AQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKY 103
A++ L ++ P W + IL S +Q + A L+ I RW +LP E+ + IK
Sbjct: 1 AEKQLEQFQKSPGFWLLLLEILANSEDQYVRQLAAITLKNKITRRWSSLPEEEKEEIKNS 60
Query: 104 IVGLIIK 110
++ L++
Sbjct: 61 LLELLLS 67
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain.
Length = 71
Score = 48.8 bits (117), Expect = 6e-08
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 44 AQEVLTALKE-HPDAWTRVDTILEY-SSNQQTKFYALQILEQVIKTRWK--ALPREQCDG 99
A++ L ++ P W+++ IL SS+ Q + A L+ +I W +LP E+ +
Sbjct: 1 AEKQLEQFEKQDPGFWSKLLQILSDTSSDLQVRQLAALYLKNLITRHWNQLSLPPEEKEQ 60
Query: 100 IKKYIVGLIIK 110
I+ ++ L+
Sbjct: 61 IRNNLLNLLGS 71
>gnl|CDD|114400 pfam05674, DUF816, Baculovirus protein of unknown function
(DUF816). This family includes proteins that are about
200 amino acids in length. The proteins are all from
baculoviruses. This family includes ORF107 from Orgyia
pseudotsugata multicapsid polyhedrosis virus (OpMNPV)
and a variety of other numbered ORF proteins, such as
ORF52, ORF140. The function of these proteins is
unknown.
Length = 171
Score = 31.2 bits (71), Expect = 0.41
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 316 QNFIQNLAMFLCTFLKEHGSL-IEKKSTPEEMLKHYNE 352
+++ + F+ T LK + + KS+P+ ML+HYNE
Sbjct: 89 KDYFPSYKSFIDTALKRLNKINPDIKSSPKAMLQHYNE 126
>gnl|CDD|184986 PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.
Length = 485
Score = 31.2 bits (70), Expect = 0.91
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 214 SSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVPLF----RNVTLKCLTEI 269
+ A+L+ + +T +R LN P G I +++ ++E LNV + NV + CL
Sbjct: 307 NDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRS 366
Query: 270 AAVSG 274
SG
Sbjct: 367 LIDSG 371
>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme
[General function prediction only].
Length = 255
Score = 30.8 bits (70), Expect = 0.98
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 55 PDAWTRVDTILEYSSNQQTKFYALQILEQVI 85
+ VD ++E +S + + Y +IL+ I
Sbjct: 55 DELIAEVDLVVEAASPEAVREYVPKILKAGI 85
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 29.7 bits (66), Expect = 2.8
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 70 NQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLN 129
N K ++ILE K R + L RE+ + +++ + I + E LERE++ ++L
Sbjct: 444 NAHRKALEMKILE---KKRIERLEREERERLERERMERIERERLERERLERERLERDRLE 500
Query: 130 MILVQVLKRE 139
+ L+RE
Sbjct: 501 RDRLDRLERE 510
>gnl|CDD|191637 pfam06908, DUF1273, Protein of unknown function (DUF1273). This
family consists of several hypothetical bacterial
proteins of around 180 residues in length. The function
of this family is unknown.
Length = 177
Score = 28.8 bits (65), Expect = 3.0
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 23 ITLLDNIVECMYTG--MGVEQKAAQEVLTALKEHPD 56
I LL+ +E TG +G EQ AA+ VL KE+P+
Sbjct: 36 IELLEEGLEWFITGGQLGFEQWAAEVVLELKKEYPE 71
>gnl|CDD|233738 TIGR02124, hypE, hydrogenase expression/formation protein HypE.
This family contains HypE (or HupE), a protein required
for expression of catalytically active hydrogenase in
many systems. It appears to be an accessory protein
involved in maturation rather than a regulatory protein
involved in expression. HypE shows considerable homology
to the thiamine-monophosphate kinase ThiL (TIGR01379)
and other enzymes.
Length = 320
Score = 28.8 bits (65), Expect = 5.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 37 MGVEQKAAQEVLTALKEHP 55
+ V +AA++VL LK HP
Sbjct: 259 LAVPPEAAEKVLEILKSHP 277
>gnl|CDD|100033 cd02197, HypE, HypE (Hydrogenase expression/formation protein).
HypE is involved in Ni-Fe hydrogenase biosynthesis.
HypE dehydrates its own carbamoyl moiety in an
ATP-dependent process to yield the enzyme thiocyanate.
The N-terminal domain of HypE is related to the
ATP-binding domains of the AIR synthases,
selenophosphate synthetase (SelD), and FGAM synthase and
is thought to bind ATP.
Length = 293
Score = 28.6 bits (65), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 37 MGVEQKAAQEVLTALKEHP 55
V + A+EVL AL+ HP
Sbjct: 264 AIVPPEDAEEVLEALRSHP 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.388
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,508,886
Number of extensions: 1645798
Number of successful extensions: 1438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1434
Number of HSP's successfully gapped: 21
Length of query: 352
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 254
Effective length of database: 6,590,910
Effective search space: 1674091140
Effective search space used: 1674091140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)