RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13179
(352 letters)
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 289 bits (740), Expect = 1e-89
Identities = 246/335 (73%), Positives = 283/335 (84%), Gaps = 2/335 (0%)
Query: 13 KLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQ 72
+LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 17 QLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMN 76
Query: 73 TKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMIL 132
TK+Y LQILE VIKTRWK LPR QC+GIKKY+VGLIIKTSS P +E+EK+Y+ KLNMIL
Sbjct: 77 TKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMIL 136
Query: 133 VQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHL 192
VQ+LK+EWPK+W +FI DIVGAS+T+ESLCQNNMVILKLLSEEVFDFS GQ+TQ KAKHL
Sbjct: 137 VQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHL 196
Query: 193 KDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKF 252
KDSMC +FSQIF LCQFV++NS NA LV ATLETLLRFLNWIPLGYIFET LI+TLI KF
Sbjct: 197 KDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKF 256
Query: 253 LNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGK 312
LNVP+FRNV+LKCLTEIA VS S YE + LFT TM QL+ M P++ NI+ AY+ GK
Sbjct: 257 LNVPMFRNVSLKCLTEIAGVS--VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGK 314
Query: 313 DTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEML 347
D EQNFIQNL++FLCTFLKEHG L+EK+ E L
Sbjct: 315 DDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREAL 349
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 279 bits (713), Expect = 6e-86
Identities = 156/343 (45%), Positives = 235/343 (68%), Gaps = 3/343 (0%)
Query: 13 KLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQ 72
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q
Sbjct: 5 GILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQ 64
Query: 73 TKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMIL 132
+KF AL IL+++I +WK LP + GI+ ++VG+II E + +K +NK ++ L
Sbjct: 65 SKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTL 124
Query: 133 VQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHL 192
VQ+LK+EWP+NW FIP+++G+S ++ ++C+NNM++LKLLSEEVFDFS Q+TQAKA HL
Sbjct: 125 VQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHL 184
Query: 193 KDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKF 252
K+SM +F QIF LC VL+ S++SL+ ATLE+LLR+L+WIP YI+ETN++ L KF
Sbjct: 185 KNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF 244
Query: 253 LNVPLFRNVTLKCLTEIAAVSGTYSN--YENVYVALFTTTMAQL-QMMFPMDINIKQAYA 309
+ P R +TLKCLTE++ + N + V F T+ Q+ + P+ ++K YA
Sbjct: 245 MTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA 304
Query: 310 MGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEMLKHYNE 352
+Q+F+Q+LAMFL T+L + +L+E + E+L + ++
Sbjct: 305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQ 347
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 191 bits (486), Expect = 2e-54
Identities = 54/333 (16%), Positives = 121/333 (36%), Gaps = 31/333 (9%)
Query: 21 LDITLLDNIVECMYTGMG--VEQKAAQEVLTALKEHPDAWTRVDTIL--EYSSNQQTKFY 76
+ ++N VE + ++ A + + +L+ W I + T+
Sbjct: 3 MSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLI 62
Query: 77 ALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVL 136
LQ L + ++ + I+ + I + S N + +L +
Sbjct: 63 CLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLD----EPAYISNAVQHLLTLLF 118
Query: 137 KREWPKNWQSFIPDIVGASKTNESLCQNNMV--ILKLLSEEVFD--FSGGQLTQAKAKHL 192
+ +P NW F + G + +N +L + +E+ D + K +
Sbjct: 119 LQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLV 178
Query: 193 KDSMCLQ-FSQIFTLCQFVL---DNSSNASLVGATLETLLRFLNWIPLGYIFETNLITTL 248
KD++ S I + ++ N+ N VG L+ ++++WI + I + L
Sbjct: 179 KDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLL 238
Query: 249 IEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAY 308
FL + R + +TEI V + +L ++ +++N+ +
Sbjct: 239 YS-FLQIEELRCAACETMTEI--------------VNKKMKPLEKLNLLNILNLNLFFSK 283
Query: 309 AMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKS 341
+ + T+ NF +++A + E ++ S
Sbjct: 284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPS 316
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 189 bits (481), Expect = 9e-54
Identities = 69/343 (20%), Positives = 127/343 (37%), Gaps = 31/343 (9%)
Query: 26 LDNIVECMYTGMGVEQ--KAAQEVLTALKEHPDAWTRVD-TILEYSSNQQTKFYALQILE 82
L V M ++ A + KE + E + + + LQILE
Sbjct: 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILE 72
Query: 83 QVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPK 142
V+K RW + R + +K ++ LI + LE E + L+ I+V+++KREWP+
Sbjct: 73 HVVKFRWNGMSRLEKVYLKNSVMELIANGTL--NILEEENHIKDALSRIVVEMIKREWPQ 130
Query: 143 NWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQ 202
+W + ++ SK E+ + M IL L+E+V F L + + ++ ++ +
Sbjct: 131 HWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQ--TLPPQRRRDIQQTLTQNMER 188
Query: 203 IFTLCQFVLD------------------NSSNASLVGATLETLLRFLNWIPLGYIFETNL 244
IF+ L +N + A L TL +++W+ + +I N
Sbjct: 189 IFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENC 248
Query: 245 ITTLIE-KFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDIN 303
I LN + +CL + G + + + V M +
Sbjct: 249 KLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADG 308
Query: 304 IKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEEM 346
+ F++ L LC + +L+ S E
Sbjct: 309 GGLV-----EKHYVFLKRLCQVLCALGNQLCALLGADSDVETP 346
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 178 bits (453), Expect = 3e-50
Identities = 57/349 (16%), Positives = 128/349 (36%), Gaps = 28/349 (8%)
Query: 6 PPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQK-AAQEVLTALKEHPDAWTRVDTI 64
LDF + ++ + +Y +E K AQ+ L + P AW +
Sbjct: 10 AAGAGAAPALDF----TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQL 65
Query: 65 LEYSSNQQTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMY 124
L+ + +++ L I W +P +Q + +K + I + +S K+
Sbjct: 66 LQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS------KIV 119
Query: 125 LNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNN---MVILKLLSEEVFDFSG 181
L +L + L + P W + D+V + +S + +L+LL+ +F
Sbjct: 120 LTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQT 179
Query: 182 GQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLETLLRFLNWIPLGYIFE 241
+L Q + ++ S+ ++ +F L + +L S+ S V + L F +W+ L +
Sbjct: 180 SRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCV--RQKVLKCFSSWVQLEVPLQ 237
Query: 242 --TNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFP 299
LI L + +++ + + + + + ++
Sbjct: 238 DCEALIQAAFA-ALQDSELFDSSVEAIVNAISQPDAQRYVNTL--------LKLIPLVLG 288
Query: 300 MDINIKQAYAMGKDTEQNFIQNLAMFLC-TFLKEHGSLIEKKSTPEEML 347
+ ++QA G + I +A+ L + +E + ++
Sbjct: 289 LQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 140 bits (354), Expect = 5e-37
Identities = 52/345 (15%), Positives = 121/345 (35%), Gaps = 25/345 (7%)
Query: 19 QKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYAL 78
+ +DI L+ V Y Q E LT + P AW +++ +Q+ +F+
Sbjct: 2 EPIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGA 61
Query: 79 QILEQVIKTRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKR 138
L + W +P E + +K+ I+ I++ + P K+ LN+L + L +
Sbjct: 62 ITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGP------KIVLNRLCISLGAYIVH 115
Query: 139 ---EWPKNWQSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDS 195
EWP + I N S ++L++L+ + T K L+
Sbjct: 116 MLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ-VIHTSVKRVVLRAE 174
Query: 196 MCLQFSQIFTLCQFV-------LDNSSNASLVGATLETLL---RFLNWIPLGYIFETNLI 245
+ + + + + ++ S + ++ + + + + G + T ++
Sbjct: 175 IAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVL 234
Query: 246 TTLIEKFLNVPLFRNVTLKC-----LTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPM 300
++ K + L E + + T ++M
Sbjct: 235 LEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDS 294
Query: 301 DINIKQAYAMGKDTEQNFIQNLAMFLCTFLKEHGSLIEKKSTPEE 345
I + ++ ++ I ++ M + ++ H +L+ T +
Sbjct: 295 LSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSAD 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 2e-11
Identities = 71/466 (15%), Positives = 138/466 (29%), Gaps = 150/466 (32%)
Query: 4 VIPPNEQ-FKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRV- 61
++ E F D D + +I+ + +E+ + DA +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQD--MPKSIL------------SKEEIDHIIMS-KDAVSGTL 65
Query: 62 ---DTILEYSSNQQTKFY--ALQILEQVIKTRWKALPREQCDGIKKYI--VGLIIKTSS- 113
T+L KF L+I + + + K R+ + YI + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 114 -TPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIV-----GASKTNESL----CQ 163
+ R + YL KL L++ L+ +++ G+ KT + C
Sbjct: 126 FAKYNVSRLQPYL-KLRQALLE-LRPA---------KNVLIDGVLGSGKT--WVALDVCL 172
Query: 164 NNMVILKLLSEEVFDFSGGQLTQAKA--KHLKDSMCLQFSQIFTL--------------- 206
+ V K + ++F + + + L+ + Q +T
Sbjct: 173 SYKVQCK-MDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 207 ---------------CQFVLDNSSNASLVGA------TLET-----LLRFLNWIPLGYI- 239
C VL N NA A L T + FL+ +I
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 240 -------FETNLITTLIEKFLNVPLF--RNVTLKC----LTEIAAV----SGTYSNYENV 282
+ + +L+ K+L+ L L+ IA T+ N+++V
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 283 YVALFTTTM----AQLQ-----------MMFPMDINIKQA------YAMGKDTEQNFIQN 321
TT + L+ +FP +I + + K +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 322 LAMFLCTFLKE---------HGSLIEKKSTPEE-------MLKHYN 351
L + +++ +E K E ++ HYN
Sbjct: 411 LHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Score = 55.2 bits (132), Expect = 2e-08
Identities = 58/402 (14%), Positives = 114/402 (28%), Gaps = 149/402 (37%)
Query: 8 NEQFKKLL---DFNQKLDITLLDNI----------VEC---MYTGMGVEQKAAQEVLTAL 51
+ ++LL + L + L N+ + C + T ++V L
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTT-------RFKQVTDFL 281
Query: 52 KEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDG----IKKYIVGL 107
A T L++ S T +L + + R + LPRE + I+
Sbjct: 282 ----SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--IIAE 335
Query: 108 IIKTSSTPETLEREKMY-LNKLNMIL-----------------------------VQVLK 137
I+ T + K +KL I+ +L
Sbjct: 336 SIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 138 REW------------------------PKNWQSFIPD------------------IVGAS 155
W PK IP IV
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 156 KTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFV---LD 212
++ ++++ L + + G L + F +F +F+ +
Sbjct: 454 NIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPERMTL----FRMVFLDFRFLEQKIR 508
Query: 213 NSSNA-SLVGATLETLLRFLNWIPLGYIFE-----TNLITTLIEKFLNVPLFRNVTLKCL 266
+ S A + G+ L TL + + YI + L+ ++ FL K
Sbjct: 509 HDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERLVNAIL-DFL---------PKI- 555
Query: 267 TEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAY 308
EN+ + + T + ++ +M + ++A+
Sbjct: 556 ------------EENLICSKY-TDLLRIALMAEDEAIFEEAH 584
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 47.5 bits (112), Expect = 5e-06
Identities = 38/263 (14%), Positives = 83/263 (31%), Gaps = 32/263 (12%)
Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQC 97
Q+ Q+ L L ++PD + +L S ++ T+ + IL+ +K ++ P
Sbjct: 29 IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 88
Query: 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKT 157
D IK + I + + + +++ + + +NW +P + +
Sbjct: 89 DFIKSECLNNIG---------DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS 139
Query: 158 NESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNA 217
+ L ++ + S L + M +F Q F S+
Sbjct: 140 EDYNTCE--GAFGALQ-KICEDSAEILDSDVLDRPLNIMIPKFLQFF--------KHSSP 188
Query: 218 SLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNV-----PLFRNVTLKCLTEIAAV 272
+ + + +F I I + IE + P R + L + V
Sbjct: 189 KIRSHAVACVNQF---IISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245
Query: 273 SGTYSNYENVYVALFTTTMAQLQ 295
+ + + Q
Sbjct: 246 R--MDRLLPHMHNIVEYMLQRTQ 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 61/363 (16%), Positives = 115/363 (31%), Gaps = 140/363 (38%)
Query: 2 ATVIPPNE--QFKKLL-----DFNQKL----DI-TLLDNIVECMYTGMGVEQKAAQEVLT 49
++++ P++ QF ++L +F DI L +++ T + ++ + +T
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 50 AL--------KEHPDAWTRVDTILEYSSNQQTKFYAL---Q------------------- 79
A K+ A + + A+ Q
Sbjct: 129 ARIMAKRPFDKKSNSA------LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 80 ILEQVIKT---RWKALPREQCDGIKKYIVGLIIKT-----SSTPETLEREKMYLNK---- 127
++ +IK L R D K + GL I S+TP+ YL
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-----YLLSIPIS 237
Query: 128 LNMI-LVQ-----VLKREW---PKNWQSFIP-------DIVGA-----SKTNESLCQNNM 166
+I ++Q V + P +S++ +V A + + ES +
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 167 VILKLLSEEVFDFSGGQLTQA------KAKHLKDSMCLQFSQIFTLCQFVLDNSSNA--- 217
+ +L F F G + +A L+DS L+N+
Sbjct: 298 KAITVL----F-FIGVRCYEAYPNTSLPPSILEDS---------------LENNEGVPSP 337
Query: 218 --SLVGATLETLLRFLNWIPLGYIFETNLITTL-IEKFLNVPLF---RNVTLKCLTEIAA 271
S+ T E + Y+ +TN + L K + + L +N+
Sbjct: 338 MLSISNLTQEQVQD--------YVNKTN--SHLPAGKQVEISLVNGAKNLV--------- 378
Query: 272 VSG 274
VSG
Sbjct: 379 VSG 381
Score = 41.2 bits (96), Expect = 4e-04
Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 67/253 (26%)
Query: 144 WQSFIPDIVGASKTNESLCQNN--MVILKLLSEEVF-DFSGGQLTQAKAKHLKDSMCLQF 200
+ F + + E ++ +L+ + F + + +K L
Sbjct: 34 QEQFNKILPEPT---EGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFDQ--VLNL 86
Query: 201 S-QIFTLCQFVLDN---SSNASLVGATLETLLRFLNWIPLGYIFETNLITTLIEKFLNVP 256
F ++ N + A L+ TL++ I YI + +K N
Sbjct: 87 CLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELI-KNYITARIMAKRPFDKKSNSA 144
Query: 257 LFRNV----------------TLKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFPM 300
LFR V T E+ + Y Y + L + L +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL---YQTYHVLVGDLIKFSAETLSELIRT 201
Query: 301 DINIKQAYAMGKDTEQNFIQN------------------------LAMFLCTFLKEHGSL 336
++ ++ + G + + +++N LA + K G
Sbjct: 202 TLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLG-- 257
Query: 337 IEKKSTPEEMLKH 349
TP E+ +
Sbjct: 258 ----FTPGELRSY 266
Score = 36.6 bits (84), Expect = 0.012
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 35/131 (26%)
Query: 175 EVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLDN-SSNASLVGATLETLLRFLNW 233
+V++ +A H KD+ FS + V++N + G +R N+
Sbjct: 1644 DVWN-------RAD-NHFKDT--YGFS----ILDIVINNPVNLTIHFGGEKGKRIR-ENY 1688
Query: 234 IPLGYIFETNLITTLIEKFLNVPLFRNVTLKCLTEIAAVSGTYSNYENV-----Y--VAL 286
+ IFET + L + +F+ + T T+ + + + + AL
Sbjct: 1689 SAM--IFETIVDGKLKTE----KIFKEINEH-STSY-----TFRSEKGLLSATQFTQPAL 1736
Query: 287 FTTTMAQLQMM 297
A + +
Sbjct: 1737 TLMEKAAFEDL 1747
Score = 33.5 bits (76), Expect = 0.12
Identities = 59/413 (14%), Positives = 112/413 (27%), Gaps = 165/413 (39%)
Query: 5 IPPN---------EQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVL------T 49
+P EQF K+L + + D+ E E++
Sbjct: 22 VPTASFFIASQLQEQFNKIL--PEPTEGFAADD-----------EPTTPAELVGKFLGYV 68
Query: 50 ALKEHPDAWTRVDTILEYSSNQ-QTKFYALQILEQVIKTRWKALPREQCDGIKKYIVGLI 108
+ P + D +L + + + L+ + I L +E + K +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCY--LEGND--IHALAAKLLQENDTTLVK--TKEL 122
Query: 109 IKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGASKTNESLCQNNMVI 168
IK Y+ + KR + K S + A +
Sbjct: 123 IKN------------YIT-----ARIMAKRPFDKKSNS---ALFRAVGEGNA-------- 154
Query: 169 LKLLSEEVFDFSGGQ---------L--TQAKAKHLKDSMCLQFSQIFTLCQFVLDNSSNA 217
+L++ +F GGQ L L + ++ TL + +
Sbjct: 155 -QLVA--IF---GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--TLSELIRTTLDAE 206
Query: 218 SLVGATLETLLRFLNWI-------PLGYIFETNLITTLIEKFLNVPL-----FRN--VTL 263
+ L L W+ Y L++ I + PL + VT
Sbjct: 207 KVFTQGLN----ILEWLENPSNTPDKDY-----LLSIPI----SCPLIGVIQLAHYVVTA 253
Query: 264 KCL----TEIAA-VSGTYSNYENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNF 318
K L E+ + + G + + + A+ A D+ ++F
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAI--------------------AET-DSWESF 292
Query: 319 IQNLAMFLCTFL------------------------KEHGSLIEKKSTPEEML 347
++ + T L E+ E +P ML
Sbjct: 293 FVSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSP--ML 339
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 39.5 bits (91), Expect = 0.002
Identities = 29/202 (14%), Positives = 64/202 (31%), Gaps = 18/202 (8%)
Query: 40 EQKAAQEVLTALKEHPDAWTR-VDTILEYSSNQQTKFYALQILEQVIKTRWK------AL 92
K ++ L L+ + I + T+ + IK +W L
Sbjct: 19 TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78
Query: 93 PREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIV 152
P + IKK IV L+I + ++ + + ++P W + + D+
Sbjct: 79 PANNVELIKKEIVPLMISLPNN---------LQVQIGEAISSIADSDFPDRWPTLLSDLA 129
Query: 153 GASKTNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVLD 212
++ N +L + + + +K + + + L + V +
Sbjct: 130 SRLSNDDM--VTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE 187
Query: 213 NSSNASLVGATLETLLRFLNWI 234
+ A+L L L +
Sbjct: 188 QITANENNKASLNILFDVLLVL 209
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function,
PSI, protein structure initiative; 2.00A {Bacillus
subtilis} SCOP: c.129.1.2
Length = 181
Score = 29.0 bits (65), Expect = 1.5
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 23 ITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPD 56
I LD +E + GVE AA+ +E+PD
Sbjct: 37 IAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPD 72
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein;
2.60A {Homo sapiens}
Length = 232
Score = 28.2 bits (62), Expect = 3.5
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87
+Q A+Q++L L H W + Y + VI+
Sbjct: 185 KQLASQKILQLLHPHVKNWG--SLLRMYGRESSKMVKQETSDKSVIEL 230
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 11/36 (30%)
Query: 190 KHLKDSMCLQFSQIFTLCQFVLDNSSNASLVGATLE 225
K L+ S+ +++ D+S+ A + AT+E
Sbjct: 23 KKLQASL-----KLYA------DDSAPALAIKATME 47
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 28.1 bits (62), Expect = 5.0
Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
Query: 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSF------IPDI 151
G++ G + ++T + + + ++ K + + F I DI
Sbjct: 5 SGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDI 64
Query: 152 VGASKTNESLCQ------NNMVILKLLSEEVFDFSGGQLTQAKAKHLKDS 195
+N + + +V+ K E +F G + +K +
Sbjct: 65 PFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHN 114
>3hwo_A Isochorismate synthase ENTC; chorismate-utilizing enzymes,
siderophore, enterobactin, enterobactin biosynthesis,
ION T iron, iron transport; HET: ISC; 2.30A {Escherichia
coli}
Length = 394
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 209 FVLDNSSNASLVGATLETLLR 229
F + + L+GA+ E LLR
Sbjct: 184 FHVPLADGGVLLGASPELLLR 204
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 26.5 bits (59), Expect = 6.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 40 EQKAAQEVLTALKEHPDAW 58
+ A +VL +K H D+W
Sbjct: 17 DFTAMYKVLDVVKAHKDSW 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.388
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,162,532
Number of extensions: 292994
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 29
Length of query: 352
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,049,298
Effective search space: 1040669586
Effective search space used: 1040669586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)