RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13179
(352 letters)
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 68.4 bits (166), Expect = 4e-13
Identities = 35/326 (10%), Positives = 93/326 (28%), Gaps = 28/326 (8%)
Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ-QTKFYALQILEQVIKTRWK------AL 92
K ++ L L+ + ++ ++ T+ + IK +W L
Sbjct: 19 TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78
Query: 93 PREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIV 152
P + IKK IV L+I ++ + + ++P W + + D+
Sbjct: 79 PANNVELIKKEIVPLMISL---------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLA 129
Query: 153 GASKTNESLCQNN-MVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFSQIFTLCQFVL 211
++ + + + + + + K + D F + +
Sbjct: 130 SRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQI 189
Query: 212 DNSSNASLVGATLETLLRFLNWIPLGYIFET---------NLITTLIEKFLNVPLFRNVT 262
+ N L +L L + + + + + K+L+
Sbjct: 190 TANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLED 249
Query: 263 LKCLTEIAAVSGTYSNYENVYVALFTTTMAQLQMMFP--MDINIKQAYAMGKDTEQNFIQ 320
+ + S+ + + T M + I ++ + + +
Sbjct: 250 PDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILV 309
Query: 321 NLAMFLCTFLKEHGSLIEKKSTPEEM 346
+ ++ T + E + M
Sbjct: 310 SKSLSFLTAVTRIPKYFEIFNNESAM 335
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 68.2 bits (165), Expect = 4e-13
Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 12/165 (7%)
Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQC 97
Q+ Q+ L L ++PD + +L S ++ T+ + IL+ +K ++ P
Sbjct: 27 IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVT 86
Query: 98 DGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKNWQSFIPDIVGA-SK 156
D IK + I + + + +++ + + +NW +P +
Sbjct: 87 DFIKSECLNNIG---------DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS 137
Query: 157 TNESLCQNNMVILKLLSEEVFDFSGGQLTQAKAKHLKDSMCLQFS 201
+ + C+ L+ + E+ + + + F
Sbjct: 138 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 182
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 35.1 bits (79), Expect = 0.015
Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 25/160 (15%)
Query: 40 EQKAAQEVLTALKEH--PDAWTRVDTILEYSSNQ-QTKFYALQILEQVIK---------- 86
E +AAQ+ L P + +L N + A ++ +
Sbjct: 17 ELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76
Query: 87 -TRWKALPREQCDGIKKYIVGLIIKTSSTPETLEREKMYLNKLNMILVQVLKREWPKN-W 144
RW A+ +K Y++ TL E + + + + E P N W
Sbjct: 77 QQRWLAIDANARREVKNYVL----------HTLGTETYRPSSASQCVAGIACAEIPVNQW 126
Query: 145 QSFIPDIVGASKTNESLCQNNMVILKLLSEEVFDFSGGQL 184
IP +V S L+ + D QL
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL 166
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
subtilis [TaxId: 1423]}
Length = 177
Score = 30.2 bits (68), Expect = 0.27
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 23 ITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY-------SSNQQT 73
I LD +E + GVE AA+ +E+PD +V I + +
Sbjct: 36 IAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPD--LKVAVITPFYEQEKNWKEPNKE 93
Query: 74 KFYALQILEQV 84
++ +L Q
Sbjct: 94 QYE--AVLAQA 102
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS
(MetA) {Bacillus cereus [TaxId: 1396]}
Length = 281
Score = 26.5 bits (58), Expect = 4.8
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 280 ENVYVALFTTTMAQLQMMFPMDINIKQAYAMGKDTEQNFIQNL----AMFLCTFLKEHGS 335
EN++V T A+ Q + + I I ++TE ++ + L S
Sbjct: 2 ENIFV--MTKERAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHME-S 58
Query: 336 LIEKKSTPEEMLKHY 350
+ + E + Y
Sbjct: 59 HLSRNVAQEHLTSFY 73
>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX
{Campylobacter jejuni [TaxId: 197]}
Length = 82
Score = 24.7 bits (54), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 5 IPPNEQFKKLLDFNQKLDITLLDNI-VECMYTGMGVEQKAA 44
I NE K+ L NQK I L + +Y G+G+++ AA
Sbjct: 39 INVNEHLKEHLK-NQKNFINLEPYFLFDTIYQGLGIDRIAA 78
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 25.2 bits (55), Expect = 8.0
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 27 DNIVECMYTGMGVEQKAAQEVLTA----LKEHPDAWTRVDTILEYSSNQQTK 74
N M+ + + A +L P+ + R + + S +
Sbjct: 44 RNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIR---VTAFDSTHTVE 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.388
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,263,073
Number of extensions: 55739
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 16
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)