BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13180
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 86/212 (40%), Gaps = 47/212 (22%)
Query: 1 GITGGIEICITFPTEYVKTQLQLD-GKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQL 59
G G +C +P ++ +T+L D GKGA
Sbjct: 120 GAAGATSLCFVYPLDFARTRLAADVGKGA------------------------------- 148
Query: 60 DGKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGG 119
A +++TG+ +C K KS G +G+YQG + ++ +A F V +T K +
Sbjct: 149 ----AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204
Query: 120 DSTAHVPKYMXXXXXXXXXXXXXXXNTPLDVVKTRMQGLEAAR------YKNTLDCAVQI 173
+ + +M + P D V+ RM +++ R Y T+DC +I
Sbjct: 205 KNVHIIVSWM---IAQTVTAVAGLVSYPFDTVRRRMM-MQSGRKGADIMYTGTVDCWRKI 260
Query: 174 WKHEGPAAFYKGTVPRLGRVCLDVAITFMIYD 205
K EGP AF+KG + R + A ++YD
Sbjct: 261 AKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYD 291
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 8/169 (4%)
Query: 64 ADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGG-DST 122
A+K+Y GI DC + K GF ++G A +++ QA+ F + K ++ GG D
Sbjct: 46 AEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRH 105
Query: 123 AHVPKYMXXXXXXXXXXXXXXX--NTPLDVVKTRM-----QGLEAARYKNTLDCAVQIWK 175
+Y PLD +TR+ +G + +C +I+K
Sbjct: 106 KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165
Query: 176 HEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLL 224
+G Y+G + + + A F +YD+ + KN+ + +
Sbjct: 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWM 214
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 146 TPLDVVKTRMQGLEAAR-------YKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVA 198
P++ VK +Q A++ YK +DC V+I K +G +F++G + + R A
Sbjct: 26 APIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85
Query: 199 ITFMIYDSFMEVF 211
+ F D + ++F
Sbjct: 86 LNFAFKDKYKQIF 98
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 113/319 (35%), Gaps = 78/319 (24%)
Query: 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
G I ITFP + K +LQ+ G+ S GL
Sbjct: 9 GTAACIADLITFPLDTAKVRLQIQGE------------------SQGLVR---------- 40
Query: 61 GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGD 120
A +Y G+ V++ G + +Y GL A + +Q S ++R + +++K Y G
Sbjct: 41 -TAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS 99
Query: 121 STAHVPKYMXXXXXXXXXXXXXXXNTPLDVVKTRMQGLEAA----RYKNTLDCAVQIWKH 176
A + + P DVVK R Q A RY++T++ I +
Sbjct: 100 EHAGIGSRLLAGSTTGALAVAVAQ--PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIARE 157
Query: 177 EGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFRFGAF 236
EG +KGT P + R + + YD + K+ + D L F
Sbjct: 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT---DDLPCHFT------- 207
Query: 237 EQLKNQAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSPNPRFKGFF 296
GAG C + A +P++ VK +++N G +
Sbjct: 208 ---------------------SAFGAGFCTTVIA-SPVDVVKTRYMNSA-------LGQY 238
Query: 297 HGTG----LIIKEEGKVAL 311
H G ++++EG A
Sbjct: 239 HSAGHCALTMLRKEGPRAF 257
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Query: 63 GADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKD-VYRGGDS 121
G ++Y + K + G +G+++G S + + + +KD + +
Sbjct: 139 GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM 198
Query: 122 TAHVPKYMXXXXXXXXXXXXXXXNTPLDVVKTRMQGLEAARYKNTLDCAVQIWKHEGPAA 181
T +P + +P+DVVKTR +Y + CA+ + + EGP A
Sbjct: 199 TDDLPCHFTSAFGAGFCTTVIA--SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRA 256
Query: 182 FYKGTVPRLGRVCLDVAITFMIYDSF 207
FYKG +P R+ + F+ Y+
Sbjct: 257 FYKGFMPSFLRLGSWNVVMFVTYEQL 282
>pdb|3HFJ|A Chain A, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3HFJ|B Chain B, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3MLA|A Chain A, Banadd In Complex With Inhibitor 1_02
pdb|3MLA|B Chain B, Banadd In Complex With Inhibitor 1_02
pdb|3MLB|A Chain A, Banadd In Complex With Inhibitor 1_02_1
pdb|3MLB|B Chain B, Banadd In Complex With Inhibitor 1_02_1
pdb|3MMX|A Chain A, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|B Chain B, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|C Chain C, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|D Chain D, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|E Chain E, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|F Chain F, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|G Chain G, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|H Chain H, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
Length = 191
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 151 VKTRMQGLE-AARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFME 209
V++R+Q LE A + ++ +GP+ Y T+ +L + DV F+I +E
Sbjct: 55 VESRLQMLELATEAEEHFSICLEELSRKGPSYTYD-TMLQLTKKYPDVQFHFIIGGDMVE 113
Query: 210 VFNKSKNIESCIDLL 224
K NIE+ +DL+
Sbjct: 114 YLPKWYNIEALLDLV 128
>pdb|2QTM|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTM|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|3E27|A Chain A, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|B Chain B, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|C Chain C, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|D Chain D, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
Length = 189
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 151 VKTRMQGLE-AARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFME 209
V++R+Q LE A + ++ +GP+ Y T+ +L + DV F+I +E
Sbjct: 53 VESRLQMLELATEAEEHFSICLEELSRKGPSYTY-DTMLQLTKKYPDVQFHFIIGGDMVE 111
Query: 210 VFNKSKNIESCIDLL 224
K NIE+ +DL+
Sbjct: 112 YLPKWYNIEALLDLV 126
>pdb|2QTR|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|C Chain C, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
Length = 189
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 151 VKTRMQGLE-AARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFME 209
V++R+Q LE A + ++ +GP+ Y T+ +L + DV F+I +E
Sbjct: 53 VESRLQMLELATEAEEHFSICLEELSRKGPSYTY-DTMLQLTKKYPDVQFHFIIGGDMVE 111
Query: 210 VFNKSKNIESCIDLL 224
K NIE+ +DL+
Sbjct: 112 YLPKWYNIEALLDLV 126
>pdb|3DV2|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
Length = 201
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 151 VKTRMQGLE-AARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFME 209
V++R+Q LE A + ++ +GP+ Y T+ +L + DV F+I +E
Sbjct: 53 VESRLQMLELATEAEEHFSICLEELSRKGPSYTY-DTMLQLTKKYPDVQFHFIIGGDMVE 111
Query: 210 VFNKSKNIESCIDLL 224
K NIE+ +DL+
Sbjct: 112 YLPKWYNIEALLDLV 126
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 27 GADKKYTGIWDCAKKTVKSHGLYLQEVSRA--------LQLDGKGA 64
G +K Y G W+ KS+ +Y Q SRA +Q+ KGA
Sbjct: 659 GDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGA 704
>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Galnac
pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
With Methyl-Alpha-D-Galactopylanoside
Length = 432
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 175 KHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFRFG 234
+ GP FY +CLDV + D V + SC D LD WF Y+ G
Sbjct: 147 RSRGPELFYGRLRNEKSDLCLDVEGS----DGKGNVL-----MYSCEDNLDQWFRYYENG 197
Query: 235 AFEQLKN------QAVDSQGNL 250
K+ + D GN+
Sbjct: 198 EIVNAKSGMCLDVEGSDGSGNV 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,480,901
Number of Sequences: 62578
Number of extensions: 375749
Number of successful extensions: 885
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 21
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)