Query psy13180
Match_columns 326
No_of_seqs 169 out of 2048
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 22:11:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.7E-51 5.7E-56 367.5 16.7 255 1-321 15-279 (297)
2 2lck_A Mitochondrial uncouplin 100.0 1.7E-51 5.9E-56 368.3 15.8 257 1-323 9-269 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.1E-35 3.7E-40 265.9 14.3 177 2-214 113-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1E-33 3.5E-38 252.4 15.4 171 2-210 121-296 (297)
5 2l5r_A Antimicrobial peptide a 38.1 26 0.0009 17.2 2.1 21 299-320 2-22 (26)
6 3vjj_A P9-1; 3.00A {Rice black 14.9 1.3E+02 0.0045 25.3 3.4 36 139-179 273-308 (368)
7 2acm_A Mucin-1; auto-catalytic 11.9 33 0.0011 21.4 -0.7 20 164-183 40-59 (66)
8 1y9i_A Low temperature require 10.3 4.9E+02 0.017 20.2 5.3 44 100-143 111-158 (178)
9 3f2e_A SIRV coat protein; four 9.9 90 0.0031 20.6 0.8 35 160-194 5-43 (100)
10 3tgu_G UQCRQ, mitochondrial ub 8.1 2.3E+02 0.0079 18.9 2.3 36 178-213 33-68 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.7e-51 Score=367.51 Aligned_cols=255 Identities=22% Similarity=0.299 Sum_probs=216.0
Q ss_pred CchhhhHHHhhcchhHHHHHHhcCCCCCCCCCCCHHHHHHHhhhhccchHHHHHHHHHhhccCCCCCCCCHHHHHHHHHH
Q psy13180 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLDGKGADKKYTGIWDCAKKTVK 80 (326)
Q Consensus 1 ~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (326)
++||+++.++++|||+||+|+|++....+. .....|++.++++++|++
T Consensus 15 ~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~--------------------------------~~~~~~~~~~~~~~~i~~ 62 (297)
T 1okc_A 15 GVAAAISKTAVAPIERVKLLLQVQHASKQI--------------------------------SAEKQYKGIIDCVVRIPK 62 (297)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHGGGCSSC--------------------------------CGGGSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhccccccc--------------------------------ccccccccHHHHHHHHHh
Confidence 367888999999999999999998542110 012458899999999999
Q ss_pred hcCccccccchHHHHHhHhhhhHHHHHHHHHHHHHh-cCCCCCCC--chhHHHHHHHHHHHHHHHhhcCcHHHHHHHHhc
Q psy13180 81 SHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVY-RGGDSTAH--VPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQG 157 (326)
Q Consensus 81 ~~G~~gLyrG~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~ 157 (326)
+||++|||||+.+++++.++..+++|.+||.+++.+ ...+.... ......+++|++||++++++++|+|+||+|+|.
T Consensus 63 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~ 142 (297)
T 1okc_A 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAA 142 (297)
T ss_dssp HHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhc
Confidence 999999999999999999999999999999999954 33222221 234667899999999999999999999999998
Q ss_pred CC-----CCCCCCHHHHHHHHHHhcCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhHHHHh
Q psy13180 158 LE-----AARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFR 232 (326)
Q Consensus 158 ~~-----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (326)
+. ...|+++++++++|+++||++|||||+.+++++.+|..++.|.+||.+++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~------------------ 204 (297)
T 1okc_A 143 DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP------------------ 204 (297)
T ss_dssp CCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG------------------
T ss_pred cccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC------------------
Confidence 64 2468999999999999999999999999999999999999999999999865321
Q ss_pred hhhHHHHHHHHhhcCCCCCCchhhhhhcccccccceeeeCchhhhHHHhhcCCCCC--CCcccccchhhhhHhhchhhhH
Q psy13180 233 FGAFEQLKNQAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSP--NPRFKGFFHGTGLIIKEEGKVA 310 (326)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~v~~Pldvirtr~q~~~~~~--~~~~~~~~~~~~~i~~~eG~~g 310 (326)
...+....+++|+++|++++ ++++|+|+||+|||.+.... ...|.+++||+++|+++||++|
T Consensus 205 ---------------~~~~~~~~~~~g~~ag~~a~-~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~g 268 (297)
T 1okc_A 205 ---------------KNVHIIVSWMIAQTVTAVAG-LVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKA 268 (297)
T ss_dssp ---------------GCSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGG
T ss_pred ---------------CCccHHHHHHHHHHHHHHHH-HhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCe
Confidence 01234557889999999998 89999999999999875432 2479999999999999999999
Q ss_pred HHHhhhhhHhh
Q psy13180 311 LTLVIEEKECF 321 (326)
Q Consensus 311 ly~G~~~r~~~ 321 (326)
||||+.|+++-
T Consensus 269 lyrG~~~~~~r 279 (297)
T 1okc_A 269 FFKGAWSNVLR 279 (297)
T ss_dssp GGTTHHHHHHH
T ss_pred EecchHHHHHh
Confidence 99999999875
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-51 Score=368.31 Aligned_cols=257 Identities=25% Similarity=0.371 Sum_probs=221.4
Q ss_pred CchhhhHHHhhcchhHHHHHHhcCCCCCCCCCCCHHHHHHHhhhhccchHHHHHHHHHhhccCCCCCCCCHHHHHHHHHH
Q psy13180 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLDGKGADKKYTGIWDCAKKTVK 80 (326)
Q Consensus 1 ~~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (326)
++||+++.++++|||+||+|+|++....... .......|++.++++++|++
T Consensus 9 ~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~i~~ 59 (303)
T 2lck_A 9 GTAACIADLITFPLDTAKVRLQIQGESQGLV-----------------------------RTAASAQYRGVLGTILTMVR 59 (303)
T ss_dssp HHHHHHHHHTTHHHHHHHHHSSCCTTCCSHH-----------------------------HHCSCSSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhhcccccc-----------------------------ccccCCCCCCHHHHHHHHHH
Confidence 3688889999999999999999986522100 00113468999999999999
Q ss_pred hcCccccccchHHHHHhHhhhhHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCcHHHHHHHHhcCCC
Q psy13180 81 SHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQGLEA 160 (326)
Q Consensus 81 ~~G~~gLyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~ 160 (326)
+||++|||||+.+++++.+++.+++|.+||.+++.+.+... ..+....+++|++||++++++++|+|+||+|+|.+..
T Consensus 60 ~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~ 137 (303)
T 2lck_A 60 TEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR 137 (303)
T ss_dssp HHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCS
T ss_pred hhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999865422 3567788999999999999999999999999998653
Q ss_pred ----CCCCCHHHHHHHHHHhcCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhhhHHHHhhhhH
Q psy13180 161 ----ARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFRFGAF 236 (326)
Q Consensus 161 ----~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (326)
..|.+.++++++|+++||++|||||+.+++++.+|..++.|.+||.+++.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------------------- 196 (303)
T 2lck_A 138 AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------------------- 196 (303)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT---------------------
T ss_pred cCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 3789999999999999999999999999999999999999999999998875431
Q ss_pred HHHHHHHhhcCCCCCCchhhhhhcccccccceeeeCchhhhHHHhhcCCCCCCCcccccchhhhhHhhchhhhHHHHhhh
Q psy13180 237 EQLKNQAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSPNPRFKGFFHGTGLIIKEEGKVALTLVIE 316 (326)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~v~~Pldvirtr~q~~~~~~~~~~~~~~~~~~~i~~~eG~~gly~G~~ 316 (326)
....+....+++|++||++++ ++++|+|+||+|||.+.. ..|.+++||+++|+++||++|||||+.
T Consensus 197 ----------~~~~~~~~~~~~g~~ag~~~~-~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~glyrG~~ 262 (303)
T 2lck_A 197 ----------LMTDDLPCHFTSAFGAGFCTT-VIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFYKGFM 262 (303)
T ss_dssp ----------SCCSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHHSCCH
T ss_pred ----------CCCCchHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhhccHH
Confidence 112344567899999999998 899999999999998753 368999999999999999999999999
Q ss_pred hhHhhhh
Q psy13180 317 EKECFQH 323 (326)
Q Consensus 317 ~r~~~~~ 323 (326)
|+++-..
T Consensus 263 ~~~~r~~ 269 (303)
T 2lck_A 263 PSFLRLG 269 (303)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987543
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=265.87 Aligned_cols=177 Identities=22% Similarity=0.399 Sum_probs=158.9
Q ss_pred chhhhHHHhhcchhHHHHHHhcCCCCCCCCCCCHHHHHHHhhhhccchHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHh
Q psy13180 2 ITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLDGKGADKKYTGIWDCAKKTVKS 81 (326)
Q Consensus 2 ~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (326)
+||+++.++++|+|+||+|+|++.... ....|++.++++++|+++
T Consensus 113 ~ag~~~~~~~~Pld~vktrlq~~~~~~-----------------------------------~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 113 TTGALAVAVAQPTDVVKVRFQAQARAG-----------------------------------GGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHSCSCC-----------------------------------CSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHhcccccC-----------------------------------CCCCCCCHHHHHHHHHHh
Confidence 578888999999999999999986421 134688999999999999
Q ss_pred cCccccccchHHHHHhHhhhhHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCcHHHHHHHHhcCCCC
Q psy13180 82 HGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQGLEAA 161 (326)
Q Consensus 82 ~G~~gLyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~~ 161 (326)
||++|||||+.+++++.++..+++|.+||.+++.+..... ...+....+++|++||++++++++|+|+||+|+|.+...
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~ 236 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999998765432 233566789999999999999999999999999998777
Q ss_pred CCCCHHHHHHHHHHhcCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy13180 162 RYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKS 214 (326)
Q Consensus 162 ~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 214 (326)
.|.++++++++|+++||++|||||+.|++++.+|..+++|.+||.+++++.+.
T Consensus 237 ~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 237 QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999877654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-33 Score=252.40 Aligned_cols=171 Identities=27% Similarity=0.482 Sum_probs=147.9
Q ss_pred chhhhHHHhhcchhHHHHHHhcCCCCCCCCCCCHHHHHHHhhhhccchHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHh
Q psy13180 2 ITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLDGKGADKKYTGIWDCAKKTVKS 81 (326)
Q Consensus 2 ~ag~~~~~~~~Pld~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (326)
+||+++.++++|+|+||+|+|++..... ....|++.++++++|+++
T Consensus 121 ~ag~~~~~~~~Pld~vktrlq~~~~~~~----------------------------------~~~~~~~~~~~~~~i~~~ 166 (297)
T 1okc_A 121 AAGATSLCFVYPLDFARTRLAADVGKGA----------------------------------AQREFTGLGNCITKIFKS 166 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSST----------------------------------TTCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHhccccCCC----------------------------------cCcCCCCHHHHHHHHHHh
Confidence 5788889999999999999999853210 134688999999999999
Q ss_pred cCccccccchHHHHHhHhhhhHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhhcCcHHHHHHHHhcCCC-
Q psy13180 82 HGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQGLEA- 160 (326)
Q Consensus 82 ~G~~gLyrG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~Pld~ik~r~q~~~~- 160 (326)
||++|||||+.+++++.++..+++|.+||.+++.+.+.. ..+....+++|++||++++++++|+|+||+|+|.+..
T Consensus 167 eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~---~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~ 243 (297)
T 1okc_A 167 DGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK---NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 243 (297)
T ss_dssp HCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG---CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred ccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC---CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999764322 2356677899999999999999999999999998642
Q ss_pred ----CCCCCHHHHHHHHHHhcCccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13180 161 ----ARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEV 210 (326)
Q Consensus 161 ----~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~ 210 (326)
..|+++++++++|+++||++|||||+.|++++. +..++.|.+||.++++
T Consensus 244 ~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 244 KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp CGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 368999999999999999999999999999996 5789999999998765
No 5
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=38.14 E-value=26 Score=17.15 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=15.3
Q ss_pred hhhHhhchhhhHHHHhhhhhHh
Q psy13180 299 TGLIIKEEGKVALTLVIEEKEC 320 (326)
Q Consensus 299 ~~~i~~~eG~~gly~G~~~r~~ 320 (326)
+++|++. |+.+|.+|+.+.+.
T Consensus 2 lkeifka-glgslvkgiaahva 22 (26)
T 2l5r_A 2 LKEIFKA-GLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHHH-hHHHHHHHHHHHHh
Confidence 3556655 89999999987553
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=14.86 E-value=1.3e+02 Score=25.28 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.9
Q ss_pred HHHHhhcCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHhcCc
Q psy13180 139 AASVFGNTPLDVVKTRMQGLEAARYKNTLDCAVQIWKHEGP 179 (326)
Q Consensus 139 ~~~~~v~~Pld~ik~r~q~~~~~~~~~~~~~~~~i~~~~G~ 179 (326)
.++++=.+|+|.+|-.++. --++...+.+.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~S-----listp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSS-----LISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSS-----CCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhh-----hccChHHHHHHHHhcCc
Confidence 4677778999999988764 23555678888888864
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=11.92 E-value=33 Score=21.41 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHhcCccccc
Q psy13180 164 KNTLDCAVQIWKHEGPAAFY 183 (326)
Q Consensus 164 ~~~~~~~~~i~~~~G~~gly 183 (326)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46777888999999988875
No 8
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=10.28 E-value=4.9e+02 Score=20.21 Aligned_cols=44 Identities=20% Similarity=-0.033 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHh----cCCCCCCCchhHHHHHHHHHHHHHHHh
Q psy13180 100 SNQAIRFFVMETMKDVY----RGGDSTAHVPKYMVGVFGAVAGAASVF 143 (326)
Q Consensus 100 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~ag~~~~~ 143 (326)
....+.|..||..|-.. ............-.+++|.+|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 45566777777766432 211111222344456667666665533
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=9.92 E-value=90 Score=20.59 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHhcCcc----ccccchhhhhhHHH
Q psy13180 160 AARYKNTLDCAVQIWKHEGPA----AFYKGTVPRLGRVC 194 (326)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~G~~----gly~G~~~~~~~~~ 194 (326)
-+++.++-+-+..++.+-|+. ..|.|++....|..
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 356677777788888888875 46888888776654
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=8.08 E-value=2.3e+02 Score=18.91 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=24.5
Q ss_pred CccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q psy13180 178 GPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNK 213 (326)
Q Consensus 178 G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 213 (326)
|+-..+|-+.-.++..+|..++...+|++..+....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333445555566777888888888888888766543
Done!