RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13180
         (326 letters)



>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein. 
          Length = 96

 Score = 93.9 bits (234), Expect = 5e-24
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 134 GAVAGAASVFGNTPLDVVKTRMQGLEAA---RYKNTLDCAVQIWKHEGPAAFYKGTVPRL 190
           G +AGA +     PLDVVKTR+Q   A    +YK  LDC  +I+K EG    YKG +P L
Sbjct: 12  GGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNL 71

Query: 191 GRVCLDVAITFMIYDSFMEVFNKSK 215
            RV    AI F  Y++  ++  K  
Sbjct: 72  LRVAPAAAIYFGTYETLKKLLLKKL 96



 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 36/118 (30%)

Query: 1   GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
           GI G I   +T+P + VKT+LQ    G  +KY GI                         
Sbjct: 13  GIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGIL------------------------ 48

Query: 61  GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRG 118
                       DC KK  K  G +G+Y+GL   +L+     AI F   ET+K +   
Sbjct: 49  ------------DCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94



 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 248 GNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSPNPRFKGFFHGTGLIIKEEG 307
             LS    +L G  AG   A     P++ VK +  +     + ++KG       I KEEG
Sbjct: 1   SPLSFLASLLAGGIAGAI-AATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEG 59


>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
           Provisional.
          Length = 300

 Score = 67.5 bits (165), Expect = 9e-13
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 12/134 (8%)

Query: 61  GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGD 120
           GKG D+++TG++DC  K  K  GF  +YQG   ++      +   F + ++ K +  G D
Sbjct: 146 GKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGND 205

Query: 121 STAH-VPKYMVG-VFGAVAGAASVFGNTPLDVVKTRM------QGLEAARYKNTLDCAVQ 172
              + + K+ V      +AG  S     P D V+ RM      +     +Y  TLDC  +
Sbjct: 206 KNTNILYKWAVAQTVTILAGLISY----PFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKK 261

Query: 173 IWKHEGPAAFYKGT 186
           I K+EG   F+KG 
Sbjct: 262 ILKNEGLGGFFKGA 275



 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 9/165 (5%)

Query: 62  KGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGDS 121
            G   +Y+GI +C ++  K  G   +++G +A +++    QA  F   +  K+++   + 
Sbjct: 46  SGKVPRYSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQ 105

Query: 122 TAHVPKYM-VGVF-GAVAGAASVFGNTPLDVVKTRMQ---GLEAAR-YKNTLDCAVQIWK 175
                K+  V +  G +AGA+S+    PLD  +TR+    G    R +    DC ++I K
Sbjct: 106 KTDFWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISK 165

Query: 176 HEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVF---NKSKNI 217
             G  + Y+G    +  + +     F +YDS   +    +K+ NI
Sbjct: 166 QTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDKNTNI 210



 Score = 34.4 bits (79), Expect = 0.056
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 62  KGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILK 97
             ++ +YTG  DC KK +K+ G  G ++G  A +L+
Sbjct: 246 AKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLR 281


>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
          Length = 259

 Score = 37.6 bits (87), Expect = 0.005
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 104 IRFFVMETMKDVYRG--GDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQGLEAA 161
           I++F+ ET+K+  +   G  +   P     + G +AG  + F  TP+DV+K+R Q +   
Sbjct: 154 IQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR-QIIYGK 212

Query: 162 RYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITF 201
            Y  T    V     EG   FYKG   R   +     I F
Sbjct: 213 SYIET----VTEIAEEGYLTFYKGCCFRSSYLFFGGLIFF 248


>gnl|CDD|129781 TIGR00698, TIGR00698, conserved hypothetical integral membrane
           protein.  Members of this family are found so far only
           in one archaeal species, Archaeoglobus fulgidus, and in
           two related bacterial species, Haemophilus influenzae
           and Escherichia coli. It has 9 GES predicted
           transmembrane regions at conserved locations in all
           members. These proteins have a molecular weight of
           approximately 35 to 38 kDa [Hypothetical proteins,
           Conserved].
          Length = 335

 Score = 28.3 bits (63), Expect = 5.0
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 17/106 (16%)

Query: 172 QIWKH-EGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEY 230
           Q  +  +    F K  + R+G       +TF     ++     ++ +   + L   +F  
Sbjct: 51  QRDEEKKRGVLFAKPFLLRIGITLYGFRLTF----PYIADVGPNEIVADTLILTSTFF-- 104

Query: 231 FRFGAFEQLKNQAVDSQGNLSPGMRVLCGLGAGIC--EAIFAVTPM 274
                F       +D Q      M +L G G+ IC   A+ A+ P+
Sbjct: 105 --LTVFLGSSRLKLDKQ------MSILLGAGSSICGAAAVAAIEPV 142


>gnl|CDD|235253 PRK04201, PRK04201, zinc transporter ZupT; Provisional.
          Length = 265

 Score = 28.3 bits (64), Expect = 5.2
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 202 MIYDSFMEVFNKSKN--IESCIDLLDLWFEYFRF 233
           M+Y SFME+  K+     E+  + +  W  Y  F
Sbjct: 47  MLYVSFMEILPKALAALTEAYGEGMGPWLGYGAF 80


>gnl|CDD|132072 TIGR03027, pepcterm_export, putative polysaccharide export protein,
           PEP-CTERM sytem-associated.  This protein family belongs
           to the larger set of polysaccharide biosynthesis/export
           proteins described by pfam02563. Members of this family
           are variable in either containing of lacking a
           78-residue insert, but appear to fall within a single
           clade, nevertheless, where the regions in which the gene
           is found encode components of the PEP-CTERM/EpsH
           proposed exosortase protein sorting system [Cell
           envelope, Biosynthesis and degradation of surface
           polysaccharides and lipopolysaccharides].
          Length = 165

 Score = 27.3 bits (61), Expect = 7.9
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 83  GFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGDSTAHVP 126
           G      G  A I++    +  +  V   +KD+ + GD TA+V 
Sbjct: 110 GLTDFADGNRAVIVRTVDGEQKQISVR--LKDLIKDGDVTANVE 151


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,351,675
Number of extensions: 1544299
Number of successful extensions: 1216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 19
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)