RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13180
(326 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 150 bits (381), Expect = 2e-43
Identities = 68/315 (21%), Positives = 115/315 (36%), Gaps = 70/315 (22%)
Query: 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
G I ITFP + K +LQ+ G+ L
Sbjct: 9 GTAACIADLITFPLDTAKVRLQIQGESQ-----------------------------GLV 39
Query: 61 GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGD 120
A +Y G+ V++ G + +Y GL A + +Q S ++R + +++K Y G
Sbjct: 40 RTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGS 99
Query: 121 STAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQ----GLEAARYKNTLDCAVQIWKH 176
A + + + G+ GA +V P DVVK R Q RY++T++ I +
Sbjct: 100 EHAGIGSRL--LAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIARE 157
Query: 177 EGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFRFGAF 236
EG +KGT P + R + + YD + K+ + D L F
Sbjct: 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT---DDLPCHF-------- 206
Query: 237 EQLKNQAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSPNPRFKGFF 296
GAG C +P++ VK +++N S ++
Sbjct: 207 --------------------TSAFGAGFC-TTVIASPVDVVKTRYMN---SALGQYHSAG 242
Query: 297 HGTGLIIKEEGKVAL 311
H ++++EG A
Sbjct: 243 HCALTMLRKEGPRAF 257
Score = 141 bits (358), Expect = 4e-40
Identities = 42/219 (19%), Positives = 78/219 (35%), Gaps = 38/219 (17%)
Query: 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
TG + + + PT+ VK + Q +
Sbjct: 112 STTGALAVAVAQPTDVVKVRFQAQAR---------------------------------- 137
Query: 61 GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKD-VYRGG 119
G ++Y + K + G +G+++G S + + + +KD + +
Sbjct: 138 -AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196
Query: 120 DSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQGLEAARYKNTLDCAVQIWKHEGP 179
T +P + AG + +P+DVVKTR +Y + CA+ + + EGP
Sbjct: 197 LMTDDLPCHFTS--AFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGP 254
Query: 180 AAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIE 218
AFYKG +P R+ + F+ Y+ +
Sbjct: 255 RAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSR 293
Score = 121 bits (306), Expect = 1e-32
Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 44/191 (23%)
Query: 132 VFGAVAGAASVFGNTPLDVVKTRMQ----------GLEAARYKNTLDCAVQIWKHEGPAA 181
+ A + PLD K R+Q +A+Y+ L + + + EGP +
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 182 FYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFRFGAFEQLKN 241
Y G V L R M + S R G ++ +K
Sbjct: 66 LYNGLVAGLQRQ--------MSFASV------------------------RIGLYDSVKQ 93
Query: 242 QAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSP-NPRFKGFFHGTG 300
+ G R+L G G P + VKV+F R+ R++
Sbjct: 94 FYTKGSEHAGIGSRLLAGSTTGALAV-AVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYK 152
Query: 301 LIIKEEGKVAL 311
I +EEG L
Sbjct: 153 TIAREEGIRGL 163
Score = 39.6 bits (93), Expect = 7e-04
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 253 GMRVLCGLGAGICEAIFAVTPMETVKV-------KFINDQRSPNPRFKGFFHGTGLIIKE 305
++ L A + P++T KV + + + +++G +++
Sbjct: 2 TVKFLGAGTAACIADLI-TFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 306 EGKVAL 311
EG +L
Sbjct: 61 EGPRSL 66
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 138 bits (349), Expect = 7e-39
Identities = 65/321 (20%), Positives = 109/321 (33%), Gaps = 76/321 (23%)
Query: 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
G+ I P E VK LQ+ Q S+ +
Sbjct: 15 GVAAAISKTAVAPIERVKLLLQV---------------------------QHASKQI--- 44
Query: 61 GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGG- 119
A+K+Y GI DC + K GF ++G A +++ QA+ F + K ++ GG
Sbjct: 45 --SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV 102
Query: 120 DSTAHVPKYMVGVF--GAVAGAASVFGNTPLDVVKTRMQ-----GLEAARYKNTLDCAVQ 172
D +Y G G AGA S+ PLD +TR+ G + +C +
Sbjct: 103 DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162
Query: 173 IWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFR 232
I+K +G Y+G + + + A F +YD+
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT-------------------------- 196
Query: 233 FGAFEQLKNQAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFIND--QRSPNP 290
K D + N+ + + A P +TV+ + + ++ +
Sbjct: 197 ------AKGMLPDPK-NVHIIVSWMIAQTVTAV-AGLVSYPFDTVRRRMMMQSGRKGADI 248
Query: 291 RFKGFFHGTGLIIKEEGKVAL 311
+ G I K+EG A
Sbjct: 249 MYTGTVDCWRKIAKDEGPKAF 269
Score = 135 bits (341), Expect = 1e-37
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 43/215 (20%)
Query: 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
G G +C +P ++ +T+L D
Sbjct: 120 GAAGATSLCFVYPLDFARTRLAADVGKG-------------------------------- 147
Query: 61 GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGD 120
A +++TG+ +C K KS G +G+YQG + ++ +A F V +T K +
Sbjct: 148 --AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK 205
Query: 121 STAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQ-----GLEAARYKNTLDCAVQIWK 175
+ + +M A + + P D V+ RM Y T+DC +I K
Sbjct: 206 NVHIIVSWM---IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAK 262
Query: 176 HEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEV 210
EGP AF+KG + R + A ++YD +
Sbjct: 263 DEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296
Score = 89.2 bits (222), Expect = 1e-20
Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 37/187 (19%)
Query: 134 GAVAGAASVFGNTPLDVVKTRMQ-------GLEAARYKNTLDCAVQIWKHEGPAAFYKGT 186
G VA A S P++ VK +Q +YK +DC V+I K +G +F++G
Sbjct: 14 GGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN 73
Query: 187 VPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFRFGAFEQLKNQAVDS 246
+ + R A+ F D + ++F +
Sbjct: 74 LANVIRYFPTQALNFAFKDKYKQIFLGGVDRH---------------------------K 106
Query: 247 QGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFIND--QRSPNPRFKGFFHGTGLIIK 304
Q + G AG F V P++ + + D + + F G + I K
Sbjct: 107 QFWRYFAGNLASGGAAGATSLCF-VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165
Query: 305 EEGKVAL 311
+G L
Sbjct: 166 SDGLRGL 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.23
Identities = 43/245 (17%), Positives = 71/245 (28%), Gaps = 85/245 (34%)
Query: 82 HGFKGVYQGL-SATILKQG---------SNQAIR--FFV--------------METMKDV 115
G G QGL +A + + +AI FF+ ++D
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 116 YRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRM----QGLEAARY-----KNT 166
+ P M+ + + V+ + L A + N
Sbjct: 328 LENNEGV---PSPMLSISNL-----------TQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 167 LDCAVQIWKHEGPAAFYKGTVPRLGRVC----LDVA-ITF-----MIYDSFMEV---FNK 213
V + GP G L + LD + I F + F+ V F+
Sbjct: 374 AKNLV-V---SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH- 428
Query: 214 SKNIESCIDLL--DLWFEYFRFGAFEQLK------NQAVDSQGNLSPGMRVLCG-LGAGI 264
S + DL+ DL F A + ++ D +RVL G + I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNA-KDIQIPVYDTFDGSD--------LRVLSGSISERI 479
Query: 265 CEAIF 269
+ I
Sbjct: 480 VDCII 484
>3kdn_A Rubisco, ribulose bisphosphate carboxylase;
ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca
dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A
{Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A*
3a12_A* 1geh_A*
Length = 444
Score = 29.7 bits (66), Expect = 1.5
Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 22/137 (16%)
Query: 63 GADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFV-METMKD---VYRG 118
G D+ + G K + + L + K N ++K G
Sbjct: 309 GIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSG 368
Query: 119 GDSTAHVPKYM------------VGVF----GAVAGAASVFGNTPLDVVKTRMQGLEAAR 162
G ++ + G G AGA +V +D + + E A+
Sbjct: 369 GLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVR--QAIDAIMQGIPLDEYAK 426
Query: 163 YKNTLDCAVQIWKHEGP 179
L A++ W H P
Sbjct: 427 THKELARALEKWGHVTP 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 1.9
Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 48/215 (22%)
Query: 62 KGADKKYTGIWDCAKKTVKSHGFKGVYQG---------LSATILKQGSNQAIRF------ 106
D K + D K + + L T+L + +F
Sbjct: 31 DNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 107 ----FVMETMKDVYRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKTRMQGLEAAR 162
F+M +K R + Y + + VF +V +R+Q R
Sbjct: 89 INYKFLMSPIKTEQR--QPSMMTRMY-IEQRDRLYNDNQVF--AKYNV--SRLQPYLKLR 141
Query: 163 YK-NTLDCAVQIWKHEGPAAFYKGTVPRL-GRVCLDVAITFMIYDSFMEVF----NKSKN 216
L A + G K T + VCL + + ++F +
Sbjct: 142 QALLELRPAKNVLID-GVLGSGK-TW--VALDVCLSYKVQCKMDF---KIFWLNLKNCNS 194
Query: 217 IESCIDLL-DLWFEYFRFGAFEQLKNQAVDSQGNL 250
E+ +++L L ++ + D N+
Sbjct: 195 PETVLEMLQKLLYQ------IDPNWTSRSDHSSNI 223
Score = 29.1 bits (64), Expect = 2.4
Identities = 29/204 (14%), Positives = 54/204 (26%), Gaps = 59/204 (28%)
Query: 41 KTVKSHGLYLQEVSRALQ-LDGKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQG 99
+ L + L L + + + K + F LS IL
Sbjct: 231 QAELRRLLKSKPYENCLLVLL----N-----VQN--AKAWNA--F-----NLSCKILLTT 272
Query: 100 SNQAIRFFVM-ETMKDVYRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVVKT--RMQ 156
+ + F+ T + S P + + + P +V+ T R
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPREVLTTNPRRL 330
Query: 157 GLEAARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKN 216
+ A ++ L WKH D +
Sbjct: 331 SIIAESIRDGL-ATWDNWKHVN-------------------------CDKLTTI------ 358
Query: 217 IESCIDLLD--LWFEYFR-FGAFE 237
IES +++L+ + + F F
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFP 382
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 28.4 bits (64), Expect = 2.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 199 ITFMIYDSFMEVFNKSKNIESCIDLL 224
I +Y + + + ++ E I LL
Sbjct: 95 IPAAVYSEMISLAPEVQSSEEYIQLL 120
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.6 bits (64), Expect = 2.8
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 221 IDLLDLWF--EYFRFGAFEQLKNQAVDSQGNLSPGMRVL---CGLGAGICEA 267
+ + + F Y G E K S L+ +VL GLG G
Sbjct: 24 VKVYEFIFGENYISSGGLEATKKIL--SDIELNENSKVLDIGSGLGGGCMYI 73
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 28.3 bits (63), Expect = 3.4
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 224 LDLWFEYF----RFGAF-EQLKNQAVDSQGNLSPGMRVL---CGLGA 262
L+L ++F R G ++ +A+ NL+ + CG G
Sbjct: 13 LNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGG 59
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 27.9 bits (62), Expect = 4.4
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 8/47 (17%)
Query: 224 LDLWFEYFRFGAF-----EQLKNQAVDSQGNLSPGMRVL---CGLGA 262
YF+ + +AV L+ ++ CG G
Sbjct: 13 FSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGG 59
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A {Escherichia
coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A 2dwn_A*
Length = 105
Score = 26.7 bits (60), Expect = 4.9
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 243 AVDSQGNLSPGMRVLCGLG-----AGICEAIFAVTPMETVKVKFIND 284
+ + G RV G GI ++ + + ++K + +
Sbjct: 19 LLPEGMTVKAGCRVRVPFGKQQERIGIVVSVSDASELPLNELKAVVE 65
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 26.7 bits (59), Expect = 9.5
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 228 FEYFRFGAFEQLKNQAVD-------SQGNLSPGMRVL---CGLGAGICEA 267
F Y+ + + A D + ++ G RVL CG+G
Sbjct: 30 FGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRL 79
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 26.7 bits (59), Expect = 9.9
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 245 DSQGNLSPGMRVL---CGLGAGICEA 267
D G P ++ CG G + A
Sbjct: 110 DHLGQAGPDDTLVDAGCGRGGSMVMA 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,014,587
Number of extensions: 301403
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 32
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)