RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13180
(326 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 75.1 bits (183), Expect = 4e-16
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 9/179 (5%)
Query: 32 YTGIWDCAKKTVKSHGLYLQEVSRALQLDGKGADKKYTGIWDCAKKTVKSHGFKGVYQGL 91
+G A + L A + A +++TG+ +C K KS G +G+YQG
Sbjct: 116 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 175
Query: 92 SATILKQGSNQAIRFFVMETMKDVYRGGDSTAHVPKYMVGVFGAVAGAASVFGNTPLDVV 151
+ ++ +A F V +T K + + + +M A + + P D V
Sbjct: 176 NVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWM---IAQTVTAVAGLVSYPFDTV 232
Query: 152 KTRMQ-----GLEAARYKNTLDCAVQIWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYD 205
+ RM Y T+DC +I K EGP AF+KG + R + A ++YD
Sbjct: 233 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYD 290
Score = 67.8 bits (164), Expect = 2e-13
Identities = 55/319 (17%), Positives = 99/319 (31%), Gaps = 72/319 (22%)
Query: 1 GITGGIEICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLD 60
G+ I P E VK LQ+
Sbjct: 14 GVAAAISKTAVAPIERVKLLLQVQHASKQI------------------------------ 43
Query: 61 GKGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYRGGD 120
A+K+Y GI DC + K GF ++G A +++ QA+ F + K ++ GG
Sbjct: 44 --SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV 101
Query: 121 STAHVPKYMVGVF---GAVAGAASVFGNTPLDVVKTRM-----QGLEAARYKNTLDCAVQ 172
G AGA S+ PLD +TR+ +G + +C +
Sbjct: 102 DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 161
Query: 173 IWKHEGPAAFYKGTVPRLGRVCLDVAITFMIYDSFMEVFNKSKNIESCIDLLDLWFEYFR 232
I+K +G Y+G + + + A F +YD+ + KN+ + +
Sbjct: 162 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWM-------- 213
Query: 233 FGAFEQLKNQAVDSQGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKFINDQRSPNPRF 292
+ + + ++ + ++ + +
Sbjct: 214 ------------------------IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMY 249
Query: 293 KGFFHGTGLIIKEEGKVAL 311
G I K+EG A
Sbjct: 250 TGTVDCWRKIAKDEGPKAF 268
Score = 52.0 bits (123), Expect = 2e-08
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 132 VFGAVAGAASVFGNTPLDVVKTRMQ-------GLEAARYKNTLDCAVQIWKHEGPAAFYK 184
+ G VA A S P++ VK +Q +YK +DC V+I K +G +F++
Sbjct: 11 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 70
Query: 185 GTVPRLGRVCLDVAITFMIYDSFMEVFNK--SKNIESCIDLLDLWFEYFRFGAFEQLKNQ 242
G + + R A+ F D + ++F ++ + GA
Sbjct: 71 GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVY 130
Query: 243 AVD 245
+D
Sbjct: 131 PLD 133
Score = 38.9 bits (89), Expect = 5e-04
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 37/105 (35%)
Query: 8 ICITFPTEYVKTQLQLDGKGADKKYTGIWDCAKKTVKSHGLYLQEVSRALQLDGKGADKK 67
+ F T + +Q KGAD YTG
Sbjct: 225 VSYPFDTVRRRMMMQSGRKGADIMYTGTV------------------------------- 253
Query: 68 YTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFFVMETM 112
DC +K K G K ++G + +L+ G A + + +
Sbjct: 254 -----DCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEI 292
Score = 33.9 bits (76), Expect = 0.021
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 247 QGNLSPGMRVLCGLGAGICEAIFAVTPMETVKVKF----INDQRSPNPRFKGFFHGTGLI 302
LS L G A + AV P+E VK+ + Q S ++KG I
Sbjct: 1 DQALSFLKDFLAGGVAAAI-SKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 59
Query: 303 IKEE 306
KE+
Sbjct: 60 PKEQ 63
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 307
Score = 27.1 bits (60), Expect = 2.6
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 22/137 (16%)
Query: 63 GADKKYTGIWDCAKKTVKSHGFKGVYQGLSATILKQGSNQAIRFF----VMETMKDVYRG 118
G D+ + G K + L + K N ++ G
Sbjct: 173 GIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSG 232
Query: 119 GDSTAHVPKYM------------VGVF----GAVAGAASVFGNTPLDVVKTRMQGLEAAR 162
G ++ + G G AGA +V +D + + E A+
Sbjct: 233 GLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAV--RQAIDAIMQGIPLDEYAK 290
Query: 163 YKNTLDCAVQIWKHEGP 179
L A++ W H P
Sbjct: 291 THKELARALEKWGHVTP 307
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 305
Score = 26.4 bits (58), Expect = 4.5
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 175 KHEGPAAFYKGTVP--RLGRVCLDVAITFMIYDSFMEVFNK 213
K E Y T+P LG + + F SF E N
Sbjct: 162 KVEQEGNVYSCTMPKGSLGTGDNKIILNFNHQASFAEAKND 202
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 26.0 bits (57), Expect = 6.3
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 62 KGADKKYTGIWDCAKKTVK--SHGFKGVYQGLSATILKQGSNQAIRFFVMETMKDVYR 117
+GA+KK + +K V L ++ S + F ++ D YR
Sbjct: 70 EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYR 127
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase
{Helicobacter pylori [TaxId: 210]}
Length = 255
Score = 25.7 bits (55), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 62 KGADKKYTGIWDCAKKTVKSHGFKGVYQGLSATI 95
K K + D +K V+ GFK V GLS +
Sbjct: 1 KDYQKLIVYLCDFLEKEVQKRGFKKVVYGLSGGL 34
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,223,129
Number of extensions: 56306
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 12
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)