BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13181
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15056|IF4H_HUMAN Eukaryotic translation initiation factor 4H OS=Homo sapiens
GN=EIF4H PE=1 SV=5
Length = 248
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 83/118 (70%), Gaps = 13/118 (11%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRN------------DNKGGFNNKQNRGG 120
+V++L++AL DG + D +R+DIA+G++ D++G +++++RGG
Sbjct: 91 EVDSLKEALTYDGALLGD-RSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGSSRESRGG 147
>sp|Q5XI72|IF4H_RAT Eukaryotic translation initiation factor 4H OS=Rattus norvegicus
GN=Eif4h PE=1 SV=1
Length = 248
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRND 107
+V++L++AL DG + D +R+DIA+G++ D
Sbjct: 91 EVDSLKEALTYDGALLGD-RSLRVDIAEGRKQD 122
>sp|Q9WUK2|IF4H_MOUSE Eukaryotic translation initiation factor 4H OS=Mus musculus
GN=Eif4h PE=1 SV=3
Length = 248
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 31 RSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD 90
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRND 107
+V++L++AL DG + D +R+DIA+G++ D
Sbjct: 91 EVDSLKEALTYDGALLGD-RSLRVDIAEGRKQD 122
>sp|Q5RBR8|IF4H_PONAB Eukaryotic translation initiation factor 4H OS=Pongo abelii
GN=EIF4H PE=2 SV=1
Length = 228
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 14 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEF 73
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 30 SRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEF 89
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRND 107
+V++L++AL DG + D +R+DIA+G++ D
Sbjct: 90 DEVDSLKEALTYDGALLGD-RSLRVDIAEGRKQD 122
>sp|Q1JPH6|IF4H_BOVIN Eukaryotic translation initiation factor 4H OS=Bos taurus GN=EIF4H
PE=2 SV=1
Length = 228
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 14 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEF 73
R+QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+FKGFCYVEF
Sbjct: 30 SRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEF 89
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRND 107
+V++L++AL DG + D +R+DIA+G++ D
Sbjct: 90 DEVDSLKEALTYDGALLGD-RSLRVDIAEGRKQD 122
>sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1
Length = 388
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 13 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVE 72
Y R+ +P+EPP+TA VGNL +T+ D+ FF E + S+RLV D T+R +GF YVE
Sbjct: 81 YQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVE 139
Query: 73 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 106
F + L AL G + G VR+ +A+ +R+
Sbjct: 140 FETADTLSAALALSGEDLM-GRPVRITVAEPRRS 172
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRF 65
G PER R EP + +VGNLP + G +E+ F E K+V R+V D+ET R
Sbjct: 230 GSRPERAPRVY-----EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 284
Query: 66 KGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102
+GF +V DV+ L +A+ ++G +R+++A+
Sbjct: 285 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 3 DYSYGGYPERYGRNQKTLPTEPPYTA--FVGNLPNGITQGDVERFFPEQKLVSV-RLVKD 59
D S G ER P EP A FVGNL + + F + V + ++ +
Sbjct: 131 DVSEGAVSER-----AEFP-EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYN 184
Query: 60 KETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 93
+ETD+ +GF +V V+ A+ K R ++G
Sbjct: 185 RETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNG 218
>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B OS=Mus musculus
GN=Eif4b PE=1 SV=1
Length = 611
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKE-TDRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ DR KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEF- 144
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIAD 102
+ + + L ++ ++R+D+AD
Sbjct: 145 EDLDSLLSALSLNEESLGNRRIRVDVAD 172
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 11 ERYGRNQKTLPTEPPY----TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRF 65
E+ Q P+ P T F NL I + DVE FF E ++V VR +++ F
Sbjct: 278 EKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSF 337
Query: 66 KGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD--GKRNDNKGGFNNKQN-RGGGS 122
+GF +VEF E ++AL GR + G ++RLDIA G+R + N R GG
Sbjct: 338 RGFGHVEFASSEEAQKALEFHGRPLL-GREIRLDIAQERGERGERPAFTPQSGNFRSGGD 396
Query: 123 GG 124
GG
Sbjct: 397 GG 398
>sp|P23588|IF4B_HUMAN Eukaryotic translation initiation factor 4B OS=Homo sapiens
GN=EIF4B PE=1 SV=2
Length = 611
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKE-TDRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEF- 144
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIAD 102
+ + + L ++ ++R+D+AD
Sbjct: 145 EDLDSLLSALSLNEESLGNRRIRVDVAD 172
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 8 GYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFK 66
G PER R EP +VGNLP + +E+ F E K+VS R+V D+ET R +
Sbjct: 135 GSPERAPRGD----FEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 190
Query: 67 GFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102
GF +V + A+ T+DG VR+++A+
Sbjct: 191 GFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 22 TEPPYTA--FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVEN 78
+EPP A FVGNLP + + F +V + ++ ++ETDR +GF +V VE
Sbjct: 49 SEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108
Query: 79 LRQALLKDGRITVDGLQVRLDIA 101
+A+ +DG Q+ ++ A
Sbjct: 109 AEKAVELLNGYDMDGRQLTVNKA 131
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 21 PTEPP------YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEF 73
P PP Y +VGN+P GI +E+ F E K+VS R+V D+ET R +GF +V
Sbjct: 219 PERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTM 278
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDN 108
+ A+ ++DG +R+++A+ + N
Sbjct: 279 ASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVGNLP + + R F + +V + ++ +++TD+ +GF +V VE +A+
Sbjct: 139 FVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYN 198
Query: 88 RITVDG 93
R V+G
Sbjct: 199 RYDVNG 204
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRF 65
G PER R +P Y +VGN+P I +E+ F E K+VS R+V D+E+ R
Sbjct: 177 GSRPERAPRT-----FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRS 231
Query: 66 KGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDN 108
+GF +V + +A+ T+DG +R++ A+ + N
Sbjct: 232 RGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQAL 83
FVGNLP I + + F + +V + ++ ++ETDR +GF +V VE +A+
Sbjct: 100 FVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 21 PTEPPYTAFVGNLP-NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
P+EP T F+GNL N E F ++VSVR+ ET++ KGF YV+F ++E+
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDN 108
++AL +D VRLD + + N++
Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSPRPNND 350
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQK-LVSVRLVKDKETDRFKGFCYVEF 73
+ QK TE P T FVG L I +++ F ++ R++ ++ TDR +G+ YV+F
Sbjct: 157 KKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDF 216
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGK---RNDNKGGFNNKQNRGGGSGGMGGNKY 130
+ +A+ + +DG + D++ K ND F + + + +G +
Sbjct: 217 ENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSF 276
Query: 131 NQHQD 135
N +D
Sbjct: 277 NADRD 281
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F+GNL + Q V+ FF E +++SVRL E +GF +V+F E ++AL
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLA-THEDGSSRGFGHVQFASSEEAKKALEL 370
Query: 86 DGRITVDGLQVRLDIADGK-------RNDNKGGFNNKQNRGGG 121
G +DG VRLD+A + RND G F KQNRG
Sbjct: 371 HG-CDLDGRPVRLDLAHERGAYTPHSRNDT-GSF-QKQNRGSS 410
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F GNL I + D+E FF E ++V VRL + FKG+ ++EF E ++AL
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 86 DGRITVDGLQVRLDIADGK---RNDNKG 110
+G++ + G VRLD+A+ + RN N G
Sbjct: 444 NGKLLL-GRDVRLDLANERGTPRNSNPG 470
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L T+ +E+ F + ++ V +VKD+E+ R +GF +V F + E+ + A++
Sbjct: 9 FVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIA 101
+VDG Q+R+D A
Sbjct: 69 GKSVDGRQIRVDQA 82
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F + ++ V +VKD+ET R +GF +V F + E+ + A+
Sbjct: 9 FVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMN 68
Query: 88 RITVDGLQVRLDIADGKRND 107
TVDG Q+R+D A ND
Sbjct: 69 GKTVDGRQIRVDQAGKSSND 88
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+EP T FVGNL T+ D+ F + S+RL D ++ R KGF YV F D+++ +
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 81 QALLKDGRITVDGLQVRLDIA 101
+ + +G + G RLD +
Sbjct: 422 KCVEMNGHF-IAGRPCRLDFS 441
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T FVG L + + + F E +V R++ D ++ R KG+ YV+F E + A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 86 DGRITVDGLQVRLDIAD 102
+G +DG V LD+++
Sbjct: 324 NGTKEIDGRMVNLDLSN 340
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T FVGNLP + Q V++FF E ++V +R E F+GF +VEF E ++AL
Sbjct: 450 TLFVGNLPYNVEQEQVKQFFQEAGEVVDIRF-STFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 86 DGRITVDGLQVRLDIA 101
G + G VRLD+A
Sbjct: 509 AGHDLM-GRPVRLDLA 523
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
Y F+G LP+ +T+ D+ FF K+ V ++ D+E + +GF ++ F + E+ + +
Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-EEESSVEHVT 154
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGMGGNK 129
+ I ++G QV + A+ + D GG N+ + GG+ G GN+
Sbjct: 155 NERYINLNGKQVEIKKAEPR--DGSGGQNSNNSTVGGAYGKLGNE 197
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L TQ ++ R+F ++ ++K+ E+ R +GF +V F D N+ +L++G
Sbjct: 10 FVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNH-VLQNG 68
Query: 88 RITVDGLQV 96
T+DG +
Sbjct: 69 PHTLDGRTI 77
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L + +E+ F + +S V +VKD+ET R +GF +V F +V++ + A++
Sbjct: 8 FIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMN 67
Query: 88 RITVDGLQVRLDIA 101
+VDG Q+R+D A
Sbjct: 68 GKSVDGRQIRVDQA 81
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
T +V NLP +T D+ R F + K+V V ++KDK++ + KG +V F+D E+ + +
Sbjct: 11 TVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCV 68
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L + +E+ F + +S V +VKD+ET R +GF +V F + ++ + A++
Sbjct: 8 FIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMN 67
Query: 88 RITVDGLQVRLDIA 101
VDG Q+R+D A
Sbjct: 68 GKAVDGRQIRVDQA 81
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD---VENLRQA 82
T +V NLP +T D+ R F + K+V V ++KDK+T R KG ++ F+D +N +A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 83 L 83
+
Sbjct: 71 I 71
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VGNL G+ +E F EQ K+V R++ D+++ R KGF +V + + ++ A+
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 88 RITVDGLQVRLDIADGK 104
+DG Q+R+ A+ +
Sbjct: 267 GADLDGRQIRVSEAEAR 283
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 21 PTEPPYTA----FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVD 75
P E ++A FVGNLP + + + F V V ++ DK T R +GF +V
Sbjct: 82 PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 76 VENLRQALLKDGRITVDGLQVRLD 99
V + A + +DG +R++
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVN 165
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQAL-LKD 86
+VGNLP +T + F E V+ V +V D+ TDR +GF +V VE ++A+ L D
Sbjct: 117 YVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFD 176
Query: 87 GRITVDGLQVRLDIADGKR 105
G V G V+++ + R
Sbjct: 177 GS-QVGGRTVKVNFPEVPR 194
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 22 TEPPYTAFVGNLPNGIT-QGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+ P+ +V NL +T QG + F + +S +++ D+ + R +GF ++ F E +
Sbjct: 213 VDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMN 272
Query: 81 QALLKDGRITVDGLQVRLDIADGK 104
AL + ++G +RL++A K
Sbjct: 273 SALDTMNEVELEGRPLRLNVAGQK 296
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGG 121
G+ V G+ + + + ++N NN Q G
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAG 248
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 25 PYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
P +VG+L IT+ + F P ++ S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VGNL G+ +E F EQ K+V R++ D+++ R KGF +V + +++A+
Sbjct: 260 YVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLN 319
Query: 88 RITVDGLQVRLDIADGK 104
+DG Q+R+ A+ +
Sbjct: 320 GADLDGRQIRVSEAEAR 336
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGG 121
G+ V G+ + + + ++N NN Q G
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAG 248
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 25 PYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
P +VG+L IT+ + F P ++ S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGG 121
G+ V G+ + + + ++N NN Q G
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAG 248
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 25 PYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
P +VG+L IT+ + F P ++ S++L+ D ET R KG+ ++ F D E ++AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 22 TEPPYTA-FVGNLPNGITQGDVERFF----PEQKLVSVRLVKDKETDRFKGFCYVEFVDV 76
T PP T+ F+ N+ + D+ R F P +V V + D T R +GF YV+F DV
Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGP---IVDVYIPLDFYTRRPRGFAYVQFEDV 61
Query: 77 ENLRQALLKDGRITVDGLQVRLDIADGKR 105
+ AL R V G Q+ + A G R
Sbjct: 62 RDAEDALYNLNRKWVCGRQIEIQFAQGDR 90
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
FVG++P T+ ++ +F + ++ V L+KDK T + +G C+V++ ++ +A+
Sbjct: 123 FVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALH 182
Query: 87 GRITVDG----LQVRLDIADGKR 105
+IT+ G +QVR ADG+R
Sbjct: 183 NQITLPGGTGPVQVRY--ADGER 203
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD 75
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD 75
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD 75
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 60
>sp|Q4IQW0|NOP12_GIBZE Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1
Length = 559
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 34 PNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
P+ I +G F + K+ +VR+V+D +T KGF YV+F D ++ ALL DG+
Sbjct: 361 PSDIEEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQFYDANDVEAALLLDGK 415
>sp|Q4WCH5|NOP12_ASPFU Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1
Length = 538
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 35 NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 94
N T+G ER + SVR+V+D+ T KGF YV+F D + +ALL DG+ L
Sbjct: 365 NAHTKGSKERASTRGNVESVRVVRDRTTRVGKGFAYVQFYDQVCVEEALLLDGKKFPPML 424
Query: 95 QVRLDIADGKR 105
+L + K+
Sbjct: 425 PRKLRVTRAKK 435
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 26 YTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
+ FVG+L IT D++ F P K+ R+VKD T + KG+ +V F + + A++
Sbjct: 97 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 156
Query: 85 KDGRITVDGLQVRLDIADGK 104
G + G Q+R + A K
Sbjct: 157 HMGGQWLGGRQIRTNWATRK 176
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ +
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRG 119
++DG Q+R+D A +GG RG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGGAFGAHGRG 100
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 26 YTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
+ FVG+L IT D++ F P K+ R+VKD T + KG+ +V F + + A++
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 85 KDGRITVDGLQVRLDIADGK 104
G + G Q+R + A K
Sbjct: 174 HMGGQWLGGRQIRTNWATRK 193
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 27 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 DGRITVDGLQVRLDIADGKRN 106
G +R+D A ++N
Sbjct: 77 LNGREFSGRALRVDNAASEKN 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,205,245
Number of Sequences: 539616
Number of extensions: 2828687
Number of successful extensions: 12475
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 11222
Number of HSP's gapped (non-prelim): 1357
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)