Query psy13181
Match_columns 137
No_of_seqs 105 out of 1457
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 22:12:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.6E-20 3.4E-25 124.8 14.3 85 24-109 33-119 (144)
2 TIGR01659 sex-lethal sex-letha 99.8 1.7E-17 3.6E-22 124.2 14.1 83 23-106 191-277 (346)
3 KOG0121|consensus 99.7 5.7E-17 1.2E-21 103.3 6.3 94 23-117 34-129 (153)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.9E-16 8.5E-21 117.0 11.7 81 25-106 269-351 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 6.2E-16 1.3E-20 115.8 9.9 82 21-103 103-186 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.3E-15 2.9E-20 114.1 10.4 81 24-105 2-84 (352)
7 PF00076 RRM_1: RNA recognitio 99.6 4.5E-15 9.7E-20 86.4 8.9 68 28-97 1-70 (70)
8 KOG0122|consensus 99.6 2.4E-15 5.3E-20 105.2 8.6 80 24-104 188-269 (270)
9 PF14259 RRM_6: RNA recognitio 99.6 5.5E-14 1.2E-18 82.1 10.0 68 28-97 1-70 (70)
10 KOG0149|consensus 99.6 5.1E-15 1.1E-19 103.1 6.1 79 23-102 10-89 (247)
11 TIGR01645 half-pint poly-U bin 99.5 7.7E-14 1.7E-18 110.4 11.1 83 24-107 203-287 (612)
12 KOG0105|consensus 99.5 7.2E-14 1.6E-18 94.5 9.3 77 24-104 5-83 (241)
13 KOG0107|consensus 99.5 1.1E-13 2.3E-18 92.7 9.4 78 24-107 9-88 (195)
14 KOG0113|consensus 99.5 9.7E-14 2.1E-18 99.7 9.0 81 23-104 99-181 (335)
15 KOG4207|consensus 99.5 1.3E-13 2.8E-18 94.6 9.1 80 23-103 11-92 (256)
16 PLN03120 nucleic acid binding 99.5 1.2E-13 2.7E-18 98.6 9.2 76 25-104 4-80 (260)
17 TIGR01648 hnRNP-R-Q heterogene 99.5 6.4E-13 1.4E-17 104.9 13.3 73 24-105 232-308 (578)
18 TIGR01622 SF-CC1 splicing fact 99.5 2.4E-13 5.2E-18 105.2 10.8 81 23-104 87-168 (457)
19 KOG0130|consensus 99.5 7.7E-14 1.7E-18 89.9 6.2 82 24-106 71-154 (170)
20 TIGR01628 PABP-1234 polyadenyl 99.5 2.2E-13 4.8E-18 108.0 10.1 77 27-104 2-80 (562)
21 KOG0125|consensus 99.5 2.3E-13 4.9E-18 98.9 8.8 89 14-105 85-175 (376)
22 TIGR01645 half-pint poly-U bin 99.5 1.9E-13 4.2E-18 108.1 9.2 78 24-102 106-185 (612)
23 TIGR01622 SF-CC1 splicing fact 99.5 4E-13 8.6E-18 104.0 10.1 77 25-102 186-264 (457)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.8E-13 1E-17 104.8 10.6 80 24-104 294-375 (509)
25 KOG0126|consensus 99.5 2.7E-14 5.8E-19 96.2 2.8 81 23-104 33-115 (219)
26 KOG0144|consensus 99.5 1.4E-13 3.1E-18 103.1 6.9 86 22-107 31-120 (510)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 5.6E-13 1.2E-17 105.2 9.8 79 22-102 55-136 (578)
28 KOG0111|consensus 99.4 1.2E-13 2.5E-18 95.8 4.7 82 23-105 8-91 (298)
29 PLN03121 nucleic acid binding 99.4 1.3E-12 2.8E-17 92.2 9.6 75 24-102 4-79 (243)
30 TIGR01628 PABP-1234 polyadenyl 99.4 9.9E-13 2.1E-17 104.3 9.5 81 23-105 283-365 (562)
31 KOG0145|consensus 99.4 9.8E-13 2.1E-17 93.3 8.1 83 23-106 39-123 (360)
32 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 4.9E-17 74.3 8.2 70 27-99 1-72 (72)
33 PLN03213 repressor of silencin 99.4 1.4E-12 3.1E-17 99.5 8.0 77 23-104 8-88 (759)
34 smart00360 RRM RNA recognition 99.4 2.9E-12 6.4E-17 73.6 7.2 69 30-99 1-71 (71)
35 COG0724 RNA-binding proteins ( 99.4 3.7E-12 8E-17 90.8 8.9 77 25-102 115-193 (306)
36 KOG0144|consensus 99.4 6.7E-13 1.5E-17 99.5 4.8 81 25-106 124-208 (510)
37 KOG0131|consensus 99.4 8.8E-13 1.9E-17 88.8 4.7 80 23-103 7-88 (203)
38 KOG0148|consensus 99.4 4.3E-12 9.3E-17 90.3 8.2 83 24-107 61-145 (321)
39 KOG0117|consensus 99.3 9.6E-12 2.1E-16 93.7 9.5 83 20-103 78-163 (506)
40 KOG0108|consensus 99.3 3.4E-12 7.3E-17 97.7 7.1 80 26-106 19-100 (435)
41 cd00590 RRM RRM (RNA recogniti 99.3 1.8E-11 4E-16 70.8 8.7 72 27-100 1-74 (74)
42 KOG0114|consensus 99.3 1.6E-11 3.4E-16 75.9 8.5 84 17-104 10-95 (124)
43 KOG0148|consensus 99.3 4.5E-11 9.7E-16 85.2 10.7 75 23-104 162-238 (321)
44 KOG4212|consensus 99.3 2.1E-11 4.5E-16 91.9 9.0 82 24-107 43-127 (608)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 3E-11 6.6E-16 94.4 10.1 76 24-106 1-80 (481)
46 KOG0117|consensus 99.3 1E-11 2.3E-16 93.5 6.7 73 23-104 257-331 (506)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 3.8E-11 8.2E-16 93.9 10.0 75 24-104 274-351 (481)
48 KOG0127|consensus 99.2 4E-11 8.8E-16 92.4 8.4 79 25-105 117-197 (678)
49 KOG0127|consensus 99.2 9E-11 2E-15 90.5 8.5 82 24-105 291-379 (678)
50 KOG0109|consensus 99.2 2.7E-11 5.9E-16 87.0 5.3 72 26-106 3-76 (346)
51 KOG0415|consensus 99.2 5.2E-11 1.1E-15 87.7 6.3 81 22-103 236-318 (479)
52 KOG0145|consensus 99.2 3.2E-10 7E-15 80.6 9.8 81 23-104 276-358 (360)
53 KOG0146|consensus 99.2 6.1E-11 1.3E-15 84.6 6.0 82 24-106 18-103 (371)
54 KOG0116|consensus 99.2 2.7E-10 5.8E-15 86.9 9.7 80 26-106 289-369 (419)
55 KOG0146|consensus 99.1 6.5E-11 1.4E-15 84.4 5.0 86 23-109 283-370 (371)
56 KOG0124|consensus 99.1 4.7E-11 1E-15 88.4 4.3 75 26-101 114-190 (544)
57 smart00361 RRM_1 RNA recogniti 99.1 7.1E-10 1.5E-14 64.9 6.9 60 39-99 2-70 (70)
58 KOG0147|consensus 99.1 2.7E-10 5.8E-15 87.7 6.2 75 28-103 281-357 (549)
59 KOG4205|consensus 99.1 7E-10 1.5E-14 81.8 7.7 82 24-106 96-178 (311)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.1 6.2E-10 1.3E-14 87.3 8.0 79 23-102 173-258 (509)
61 PF13893 RRM_5: RNA recognitio 99.0 1.6E-09 3.5E-14 60.5 7.1 54 42-101 1-56 (56)
62 KOG4208|consensus 99.0 1.3E-09 2.8E-14 75.0 6.9 79 25-104 49-130 (214)
63 KOG0124|consensus 99.0 1.1E-09 2.4E-14 81.2 7.0 104 1-105 175-291 (544)
64 KOG0153|consensus 99.0 2.5E-09 5.4E-14 78.6 8.4 78 20-104 223-303 (377)
65 KOG4206|consensus 99.0 2.7E-09 5.8E-14 74.3 6.8 77 26-106 10-92 (221)
66 KOG0109|consensus 99.0 1.7E-09 3.7E-14 77.9 5.9 90 5-105 60-151 (346)
67 KOG0131|consensus 98.9 8E-10 1.7E-14 74.7 3.9 81 23-104 94-177 (203)
68 KOG4205|consensus 98.9 9.9E-10 2.1E-14 81.0 4.7 82 24-106 5-87 (311)
69 KOG0123|consensus 98.9 8.7E-09 1.9E-13 78.1 7.8 77 25-105 76-154 (369)
70 KOG0132|consensus 98.9 6.5E-09 1.4E-13 83.1 6.7 74 25-105 421-496 (894)
71 KOG4211|consensus 98.9 1.2E-08 2.6E-13 78.0 7.8 81 23-106 8-88 (510)
72 KOG0533|consensus 98.8 2.6E-08 5.6E-13 71.1 7.3 82 21-104 79-162 (243)
73 PF04059 RRM_2: RNA recognitio 98.7 1.3E-07 2.8E-12 58.5 7.6 76 26-102 2-85 (97)
74 KOG0123|consensus 98.7 8E-08 1.7E-12 72.9 7.5 72 26-104 2-75 (369)
75 KOG1457|consensus 98.7 6.1E-07 1.3E-11 62.9 11.0 81 24-105 33-119 (284)
76 KOG0226|consensus 98.6 1.3E-08 2.9E-13 72.1 2.3 82 23-105 188-271 (290)
77 KOG4211|consensus 98.6 1.6E-07 3.5E-12 72.0 8.1 78 24-103 102-181 (510)
78 KOG0110|consensus 98.6 1.1E-07 2.4E-12 75.5 7.5 77 27-104 517-598 (725)
79 KOG0110|consensus 98.6 3.1E-08 6.6E-13 78.6 4.3 80 24-104 612-693 (725)
80 KOG4661|consensus 98.6 9.8E-08 2.1E-12 74.6 6.5 81 24-105 404-486 (940)
81 KOG4209|consensus 98.6 3.4E-07 7.3E-12 65.3 7.8 84 20-104 96-180 (231)
82 KOG4212|consensus 98.5 2.4E-07 5.2E-12 70.4 5.7 74 22-101 533-608 (608)
83 KOG0106|consensus 98.5 2.8E-07 6.1E-12 64.6 4.7 74 26-108 2-77 (216)
84 KOG4849|consensus 98.4 1E-06 2.2E-11 65.4 5.9 75 23-98 78-156 (498)
85 KOG1548|consensus 98.3 3.8E-06 8.2E-11 62.2 8.2 77 24-102 133-219 (382)
86 KOG4454|consensus 98.3 2.1E-07 4.6E-12 64.9 1.5 78 23-103 7-86 (267)
87 KOG0151|consensus 98.3 3.8E-06 8.3E-11 67.2 8.1 81 22-103 171-256 (877)
88 KOG4660|consensus 98.3 7.2E-07 1.6E-11 69.3 3.7 70 22-97 72-143 (549)
89 KOG1995|consensus 98.2 3.8E-06 8.3E-11 62.3 6.3 83 22-105 63-155 (351)
90 KOG4210|consensus 98.0 1.1E-05 2.4E-10 59.3 5.6 90 25-115 184-275 (285)
91 KOG0120|consensus 98.0 4.7E-06 1E-10 65.0 3.6 81 23-104 287-369 (500)
92 KOG0147|consensus 98.0 2.3E-06 4.9E-11 66.5 1.2 83 24-107 178-261 (549)
93 KOG1457|consensus 97.9 8.9E-06 1.9E-10 57.1 3.3 65 22-91 207-273 (284)
94 KOG1365|consensus 97.9 1.8E-05 4E-10 59.5 4.2 80 24-105 279-363 (508)
95 KOG1190|consensus 97.8 9.3E-05 2E-09 56.1 7.5 72 25-102 297-371 (492)
96 KOG4206|consensus 97.8 0.00013 2.8E-09 51.2 7.2 75 22-102 143-220 (221)
97 KOG4307|consensus 97.8 0.00014 2.9E-09 58.6 7.7 73 26-100 868-943 (944)
98 PF08777 RRM_3: RNA binding mo 97.7 0.00016 3.5E-09 45.5 6.3 70 26-101 2-77 (105)
99 KOG0129|consensus 97.6 0.00033 7.1E-09 54.5 7.1 81 21-102 366-452 (520)
100 PF11608 Limkain-b1: Limkain b 97.6 0.00024 5.2E-09 42.6 4.8 66 26-102 3-75 (90)
101 KOG0106|consensus 97.5 0.00011 2.4E-09 51.7 3.1 76 18-102 92-169 (216)
102 KOG1365|consensus 97.4 0.00015 3.2E-09 54.7 3.1 76 25-102 161-241 (508)
103 KOG1190|consensus 97.2 0.0015 3.2E-08 49.8 7.0 76 23-103 412-490 (492)
104 KOG0129|consensus 97.2 0.0021 4.5E-08 50.2 7.9 60 25-84 259-324 (520)
105 COG5175 MOT2 Transcriptional r 97.1 0.0015 3.2E-08 48.8 6.0 78 26-104 115-203 (480)
106 KOG4307|consensus 97.0 0.0013 2.9E-08 53.2 4.8 83 18-102 427-512 (944)
107 KOG0105|consensus 96.9 0.026 5.7E-07 39.0 9.8 65 19-91 109-175 (241)
108 PF08675 RNA_bind: RNA binding 96.8 0.011 2.4E-07 35.5 6.7 56 23-86 7-63 (87)
109 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.01 2.2E-07 37.0 6.8 75 25-101 6-89 (100)
110 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0041 9E-08 34.1 3.9 51 26-83 2-53 (53)
111 PF10309 DUF2414: Protein of u 96.5 0.012 2.7E-07 33.3 5.3 53 24-84 4-60 (62)
112 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.031 6.8E-07 38.4 7.6 79 23-102 5-96 (176)
113 KOG2193|consensus 96.3 0.0033 7.2E-08 48.2 2.9 72 27-105 3-77 (584)
114 PF08952 DUF1866: Domain of un 96.2 0.027 5.9E-07 37.4 6.3 72 24-104 26-107 (146)
115 KOG1456|consensus 96.2 0.054 1.2E-06 41.2 8.5 75 24-104 286-363 (494)
116 KOG0120|consensus 96.2 0.025 5.3E-07 44.7 7.0 63 41-104 425-492 (500)
117 KOG1456|consensus 96.2 0.044 9.6E-07 41.7 7.9 76 24-105 119-200 (494)
118 KOG2416|consensus 96.1 0.0055 1.2E-07 48.8 3.3 78 21-105 440-523 (718)
119 KOG0128|consensus 95.8 0.0043 9.4E-08 51.1 1.5 77 25-103 736-814 (881)
120 KOG1548|consensus 95.8 0.052 1.1E-06 40.8 6.7 78 22-104 262-352 (382)
121 KOG3152|consensus 95.7 0.0072 1.6E-07 43.5 2.0 71 24-95 73-157 (278)
122 PF07576 BRAP2: BRCA1-associat 95.6 0.21 4.5E-06 31.7 8.2 67 24-93 11-81 (110)
123 KOG2314|consensus 95.6 0.062 1.3E-06 42.9 6.9 75 25-101 58-141 (698)
124 KOG1855|consensus 95.2 0.031 6.8E-07 43.0 4.0 64 22-85 228-306 (484)
125 KOG0112|consensus 95.1 0.025 5.4E-07 47.2 3.7 76 23-105 453-532 (975)
126 KOG0128|consensus 95.1 0.0032 7E-08 51.9 -1.6 66 26-92 668-735 (881)
127 KOG1996|consensus 94.6 0.12 2.5E-06 38.3 5.6 62 40-102 301-365 (378)
128 KOG0804|consensus 94.4 0.18 3.8E-06 39.3 6.4 66 25-93 74-142 (493)
129 KOG4676|consensus 93.8 0.1 2.3E-06 39.9 4.0 76 26-102 8-87 (479)
130 KOG0115|consensus 93.6 0.061 1.3E-06 38.8 2.4 58 26-84 32-90 (275)
131 KOG2202|consensus 92.8 0.037 8E-07 39.9 0.4 60 41-102 84-146 (260)
132 KOG0112|consensus 92.3 0.025 5.5E-07 47.1 -1.1 77 24-102 371-449 (975)
133 PRK11634 ATP-dependent RNA hel 92.2 1 2.2E-05 37.0 8.0 66 27-102 488-561 (629)
134 KOG2591|consensus 92.0 0.29 6.3E-06 39.2 4.4 72 23-101 173-249 (684)
135 KOG2068|consensus 91.7 0.082 1.8E-06 39.5 1.1 78 26-104 78-163 (327)
136 PF03880 DbpA: DbpA RNA bindin 90.8 1.2 2.7E-05 25.8 5.3 57 35-101 11-74 (74)
137 KOG4660|consensus 90.7 0.49 1.1E-05 37.7 4.5 50 53-103 418-472 (549)
138 PF11767 SET_assoc: Histone ly 90.7 2 4.4E-05 24.6 6.0 55 35-98 10-65 (66)
139 KOG4410|consensus 89.0 1.7 3.7E-05 32.2 5.8 47 24-76 329-377 (396)
140 PF04847 Calcipressin: Calcipr 88.5 1.6 3.6E-05 30.2 5.3 59 39-104 9-71 (184)
141 KOG4210|consensus 88.1 0.75 1.6E-05 34.1 3.7 82 24-105 87-169 (285)
142 KOG2253|consensus 87.6 0.44 9.4E-06 38.8 2.3 71 20-100 35-107 (668)
143 KOG4285|consensus 86.9 2.7 5.8E-05 31.4 5.8 71 26-104 198-270 (350)
144 KOG2135|consensus 86.5 0.4 8.8E-06 37.6 1.5 72 25-103 372-445 (526)
145 KOG4483|consensus 86.4 1.7 3.7E-05 33.7 4.7 55 24-85 390-446 (528)
146 PF15023 DUF4523: Protein of u 83.6 7.3 0.00016 26.0 6.1 69 23-100 84-158 (166)
147 PF03468 XS: XS domain; Inter 77.6 4.2 9E-05 26.0 3.5 59 26-86 9-77 (116)
148 KOG2193|consensus 73.4 0.15 3.3E-06 39.5 -4.5 76 23-103 78-156 (584)
149 PF07292 NID: Nmi/IFP 35 domai 71.0 3.6 7.8E-05 25.0 1.9 24 24-47 51-74 (88)
150 KOG4574|consensus 69.8 2.9 6.2E-05 35.5 1.6 73 27-105 300-375 (1007)
151 KOG3973|consensus 69.1 6.4 0.00014 30.1 3.2 6 126-131 380-385 (465)
152 KOG1295|consensus 65.4 13 0.00028 28.7 4.2 70 23-92 5-79 (376)
153 COG5193 LHP1 La protein, small 44.4 12 0.00026 29.2 1.1 60 25-84 174-244 (438)
154 PF07530 PRE_C2HC: Associated 43.3 44 0.00095 19.1 3.1 60 41-103 3-64 (68)
155 COG4907 Predicted membrane pro 42.4 28 0.0006 27.9 2.8 8 77-84 526-533 (595)
156 KOG4676|consensus 37.9 11 0.00023 29.4 -0.0 71 23-96 50-122 (479)
157 KOG3973|consensus 36.6 61 0.0013 25.0 3.7 6 126-131 456-461 (465)
158 PF02714 DUF221: Domain of unk 35.7 52 0.0011 24.4 3.4 33 69-104 1-34 (325)
159 smart00596 PRE_C2HC PRE_C2HC d 31.0 62 0.0013 18.7 2.4 59 41-102 3-63 (69)
160 PF10567 Nab6_mRNP_bdg: RNA-re 29.1 1.4E+02 0.0031 22.5 4.5 80 23-102 13-106 (309)
161 PRK11901 hypothetical protein; 29.0 1.1E+02 0.0023 23.4 4.0 59 26-87 246-306 (327)
162 COG0724 RNA-binding proteins ( 26.5 1.3E+02 0.0028 20.7 4.0 38 22-59 222-260 (306)
163 PHA01632 hypothetical protein 25.1 53 0.0011 18.1 1.3 21 28-48 19-39 (64)
164 PF14893 PNMA: PNMA 24.9 38 0.00082 25.8 1.0 25 24-48 17-41 (331)
165 COG0030 KsgA Dimethyladenosine 24.8 77 0.0017 23.3 2.6 31 26-56 96-127 (259)
166 KOG4008|consensus 22.6 45 0.00098 24.2 1.0 26 24-49 39-64 (261)
167 TIGR03636 L23_arch archaeal ri 22.2 1.8E+02 0.0039 17.1 3.6 52 28-82 16-70 (77)
168 PF15407 Spo7_2_N: Sporulation 22.0 31 0.00067 19.8 0.0 25 23-47 25-49 (67)
169 KOG2295|consensus 21.2 9.8 0.00021 30.9 -2.7 68 24-92 230-299 (648)
170 PRK14548 50S ribosomal protein 20.3 2.1E+02 0.0046 17.1 3.5 50 32-84 27-79 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.6e-20 Score=124.79 Aligned_cols=85 Identities=25% Similarity=0.473 Sum_probs=79.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+|||+.++|++|+++|++| .|..|.++.++.|+++++||||+|.+.++|++||. |++ ..|+++.|+|.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng-~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG-KELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEeC
Confidence 45789999999999999999999999 99999999999999999999999999999999999 999 9999999999999
Q ss_pred CCCCCCCC
Q psy13181 102 DGKRNDNK 109 (137)
Q Consensus 102 ~~~~~~~~ 109 (137)
.+++...+
T Consensus 112 ~~~~~~~~ 119 (144)
T PLN03134 112 NDRPSAPR 119 (144)
T ss_pred CcCCCCCC
Confidence 87765433
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=1.7e-17 Score=124.20 Aligned_cols=83 Identities=22% Similarity=0.413 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~v 98 (137)
...++|||+|||..+++++|+++|++| .|..+.++.++.+++++++|||+|.+.++|++||+ |++ ..|.+ ++|.|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN-VIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CccCCCceeEEE
Confidence 456789999999999999999999999 99999999999999999999999999999999999 999 87765 78999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++.....
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 99886543
No 3
>KOG0121|consensus
Probab=99.69 E-value=5.7e-17 Score=103.31 Aligned_cols=94 Identities=22% Similarity=0.363 Sum_probs=86.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
..+.+|||+||+..++|++|.++|+.+ .|..|.|-.|+.+..++|||||+|.+.++|+.|+. +++ ..|+.+.|++.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisg-trLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISG-TRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhcc-Ccccccceeeec
Confidence 467899999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCCCCCCCCCCCCCC
Q psy13181 101 ADGKRNDNKGGFNNKQN 117 (137)
Q Consensus 101 a~~~~~~~~~~~~~~~~ 117 (137)
...-...|+.++|.-+|
T Consensus 113 D~GF~eGRQyGRG~sGG 129 (153)
T KOG0121|consen 113 DAGFVEGRQYGRGKSGG 129 (153)
T ss_pred cccchhhhhhcCCCCCC
Confidence 98888888877665433
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=3.9e-16 Score=116.96 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=76.8
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
..+|||+|||..+++++|.++|++| .|..+.++.++.|+.++|||||+|.+.++|.+|+. ||| ..|+|+.|+|.++.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG-~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNG-YTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEEcc
Confidence 4579999999999999999999999 99999999999999999999999999999999999 999 99999999999998
Q ss_pred CCCC
Q psy13181 103 GKRN 106 (137)
Q Consensus 103 ~~~~ 106 (137)
.+..
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 7653
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=6.2e-16 Score=115.81 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||++++|++|+++|+.| .|..|.+++|+.++++++||||+|.++++|+.||+ |++ ..|.+++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG-~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG-ITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC-CccCCceeee
Confidence 33456899999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCC
Q psy13181 99 DIADG 103 (137)
Q Consensus 99 ~~a~~ 103 (137)
.++.+
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98765
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=1.3e-15 Score=114.10 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=76.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|||+|||..++|++|+++|++| .|..|.+++++.+++++|||||+|.+.++|.+||. |++ ..|.|+.|.|.++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g-~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNG-LRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhccc-EEECCeeEEEEee
Confidence 35799999999999999999999999 99999999999999999999999999999999999 999 9999999999998
Q ss_pred CCCC
Q psy13181 102 DGKR 105 (137)
Q Consensus 102 ~~~~ 105 (137)
.+..
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 7655
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=4.5e-15 Score=86.35 Aligned_cols=68 Identities=31% Similarity=0.687 Sum_probs=64.0
Q ss_pred EEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 28 AFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 28 l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
|||+|||..+++++|+++|++| .+..+.+..+ .++..+++|||+|.+.+++++|+. +++ ..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g-~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNG-KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCC-CEECccCcC
Confidence 7999999999999999999999 9999999887 568899999999999999999999 999 999999875
No 8
>KOG0122|consensus
Probab=99.62 E-value=2.4e-15 Score=105.19 Aligned_cols=80 Identities=29% Similarity=0.438 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|.|.||+.+++|++|+++|.+| .|..|.+.+|+.||.++|||||.|.++++|.+||. |+| .-++.--|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG-~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNG-YGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccC-cccceEEEEEEec
Confidence 45789999999999999999999999 99999999999999999999999999999999999 999 9999999999999
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 886
No 9
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=5.5e-14 Score=82.13 Aligned_cols=68 Identities=35% Similarity=0.692 Sum_probs=62.2
Q ss_pred EEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 28 AFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 28 l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
|+|+|||+.+++++|.++|+.+ .+..+.+..++. +..+++|||+|.+.++|..|+. +++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~-~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG-KEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC-cEECCEEcC
Confidence 7999999999999999999999 999999999877 8999999999999999999999 888 999999874
No 10
>KOG0149|consensus
Probab=99.57 E-value=5.1e-15 Score=103.09 Aligned_cols=79 Identities=27% Similarity=0.436 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
+.-++|||++|++++..++|+++|++| +|++..++.|+.|++++||+||+|.+.++|.+|++-.. ..|+|++..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 455799999999999999999999999 99999999999999999999999999999999999444 8999999999887
Q ss_pred C
Q psy13181 102 D 102 (137)
Q Consensus 102 ~ 102 (137)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 5
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=7.7e-14 Score=110.38 Aligned_cols=83 Identities=13% Similarity=0.310 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+|||.++++++|+++|+.| .|..+.+.+++.+++++|||||+|.+.+++..|+. ||+ ..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg-~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCC-CeeCCeEEEEEec
Confidence 34789999999999999999999999 99999999999999999999999999999999999 999 9999999999999
Q ss_pred CCCCCC
Q psy13181 102 DGKRND 107 (137)
Q Consensus 102 ~~~~~~ 107 (137)
.+.+..
T Consensus 282 i~pP~~ 287 (612)
T TIGR01645 282 VTPPDA 287 (612)
T ss_pred CCCccc
Confidence 865543
No 12
>KOG0105|consensus
Probab=99.54 E-value=7.2e-14 Score=94.48 Aligned_cols=77 Identities=27% Similarity=0.544 Sum_probs=67.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|||+|||.++.|.+|.++|-+| .|.+|.+-.. .....||||+|++..+|+.||. -++ ..+++..|+|+++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdG-Ydydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDG-YDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccc-cccCcceEEEEec
Confidence 45789999999999999999999999 9999877433 2345699999999999999999 999 9999999999997
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 643
No 13
>KOG0107|consensus
Probab=99.53 E-value=1.1e-13 Score=92.73 Aligned_cols=78 Identities=29% Similarity=0.519 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+||+..+++.+|...|..| .+..|.|-.. ..|||||+|++..+|+.|+. |+| ..|.|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG-~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDG-KDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCC-ccccCceEEEEee
Confidence 35799999999999999999999999 8888877654 46899999999999999999 999 9999999999999
Q ss_pred CCCCCC
Q psy13181 102 DGKRND 107 (137)
Q Consensus 102 ~~~~~~ 107 (137)
..+...
T Consensus 83 ~G~~r~ 88 (195)
T KOG0107|consen 83 TGRPRG 88 (195)
T ss_pred cCCccc
Confidence 877653
No 14
>KOG0113|consensus
Probab=99.52 E-value=9.7e-14 Score=99.66 Aligned_cols=81 Identities=30% Similarity=0.593 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
++=+||||+-|+.+++|..|+..|+.| .|..|.|+.++.|++++|||||+|..+.+..+|.+ .+| ++|+++.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG-~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG-IKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC-ceecCcEEEEEe
Confidence 445899999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
-..+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7654
No 15
>KOG4207|consensus
Probab=99.51 E-value=1.3e-13 Score=94.64 Aligned_cols=80 Identities=29% Similarity=0.439 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
..-.+|.|.||...|+.++|+..|++| .|.+|.|.+|+.|..++|||||.|....+|+.|++ |+| .+|+|+.|.|..
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG-~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDG-AVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcc-eeeccceeeehh
Confidence 445789999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCC
Q psy13181 101 ADG 103 (137)
Q Consensus 101 a~~ 103 (137)
|.-
T Consensus 90 ary 92 (256)
T KOG4207|consen 90 ARY 92 (256)
T ss_pred hhc
Confidence 873
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=98.55 Aligned_cols=76 Identities=26% Similarity=0.336 Sum_probs=70.2
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~ 103 (137)
.++|||+|||+.++|++|+++|+.| .|.+|.++.++. .+++|||+|.+.++++.||.|++ ..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG-~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSG-ATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcC-CeeCCceEEEEeccC
Confidence 4799999999999999999999999 999999998864 36899999999999999999999 999999999999874
Q ss_pred C
Q psy13181 104 K 104 (137)
Q Consensus 104 ~ 104 (137)
-
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=6.4e-13 Score=104.89 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=65.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
..++|||+||+.++++++|+++|++| .|..|.++ ++||||+|.+.++|++|++ |++ ..|+++.|+|.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG-~~i~Gr~I~V~ 302 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNG-KELEGSEIEVT 302 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 45789999999999999999999998 67777665 3499999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy13181 100 IADGKR 105 (137)
Q Consensus 100 ~a~~~~ 105 (137)
+++++.
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 998753
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=2.4e-13 Score=105.25 Aligned_cols=81 Identities=31% Similarity=0.447 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
...++|||+|||..+++++|+++|+++ .|..|.++.++.+++++|+|||+|.+.++|.+||.|++ ..|.|+.|.|..+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g-~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTG-QMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCC-CEECCeeeEEeec
Confidence 346799999999999999999999999 99999999999999999999999999999999999999 9999999999987
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 644
No 19
>KOG0130|consensus
Probab=99.49 E-value=7.7e-14 Score=89.88 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..+.|||.++.++++|++|.+.|..| .|..|.+.+|+.||..+||++|+|.+..+|++|+. +|+ ..|.+..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng-~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG-AELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc-hhhhCCceeEEEE
Confidence 45899999999999999999999999 99999999999999999999999999999999999 999 9999999999998
Q ss_pred CCCCC
Q psy13181 102 DGKRN 106 (137)
Q Consensus 102 ~~~~~ 106 (137)
..+..
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 75544
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=2.2e-13 Score=108.03 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=73.3
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCCC
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGK 104 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~~ 104 (137)
+|||+|||.+++|++|+++|++| .|..|.+++|..|++++|||||+|.+.++|++|++ +++ ..|.|+.|+|.++...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~-~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNF-KRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeeEEeeccccc
Confidence 79999999999999999999999 99999999999999999999999999999999999 999 9999999999997643
No 21
>KOG0125|consensus
Probab=99.48 E-value=2.3e-13 Score=98.92 Aligned_cols=89 Identities=19% Similarity=0.359 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee
Q psy13181 14 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 91 (137)
Q Consensus 14 ~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l 91 (137)
.++..+..+..+++|+|+|||+...|-||+.+|.+| .|.+|.++.+- .-++||+||+|++.+++++|-. ||| ..+
T Consensus 85 ~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHg-t~V 161 (376)
T KOG0125|consen 85 QPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHG-TVV 161 (376)
T ss_pred CCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhc-cee
Confidence 344555556677899999999999999999999999 99999888763 2368999999999999999999 999 999
Q ss_pred cCeEEEEEecCCCC
Q psy13181 92 DGLQVRLDIADGKR 105 (137)
Q Consensus 92 ~g~~l~v~~a~~~~ 105 (137)
.|++|+|..+..+-
T Consensus 162 EGRkIEVn~ATarV 175 (376)
T KOG0125|consen 162 EGRKIEVNNATARV 175 (376)
T ss_pred eceEEEEeccchhh
Confidence 99999999998763
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.48 E-value=1.9e-13 Score=108.14 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=73.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+|||..+++++|+++|.+| .|..|.+++|+.|++++|||||+|.+.++++.|+. |++ ..|.|+.|+|...
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG-~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG-QMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCC-eEEecceeeeccc
Confidence 34789999999999999999999999 99999999999999999999999999999999999 999 9999999999864
Q ss_pred C
Q psy13181 102 D 102 (137)
Q Consensus 102 ~ 102 (137)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=4e-13 Score=104.04 Aligned_cols=77 Identities=31% Similarity=0.546 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
..+|||+|||..+++++|+++|++| .|..|.++.++.++++++||||+|.+.++|..|+. |++ ..|.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g-~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG-FELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC-cEECCEEEEEEEcc
Confidence 5899999999999999999999999 99999999999888999999999999999999999 999 99999999999976
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.47 E-value=4.8e-13 Score=104.78 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|||+|||..+++++|+++|+.| .|..+.++.+..++.++|||||+|.+.+.|..|+. |++ ..|.++.|.|.++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g-~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNG-KDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEEEC
Confidence 45799999999999999999999999 99999999998899999999999999999999999 999 9999999999998
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 643
No 25
>KOG0126|consensus
Probab=99.47 E-value=2.7e-14 Score=96.20 Aligned_cols=81 Identities=27% Similarity=0.521 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
..+.-|||+|||.+.||.||...|++| .++.|.+++|+.||+++||||+-|++..+.--|+. |+| ..|.|+.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NG-iki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNG-IKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCC-ceecceeEEeee
Confidence 355789999999999999999999999 99999999999999999999999999999888999 999 999999999998
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
....
T Consensus 112 v~~Y 115 (219)
T KOG0126|consen 112 VSNY 115 (219)
T ss_pred cccc
Confidence 6543
No 26
>KOG0144|consensus
Probab=99.46 E-value=1.4e-13 Score=103.06 Aligned_cols=86 Identities=27% Similarity=0.528 Sum_probs=78.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVR 97 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~ 97 (137)
+....++||+.+|..|+|.||+.+|++| .+.+|.+++|+.|+.++|||||.|.+.+++.+|+. ||..+.|-| ++|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3456789999999999999999999999 99999999999999999999999999999999999 888677766 8899
Q ss_pred EEecCCCCCC
Q psy13181 98 LDIADGKRND 107 (137)
Q Consensus 98 v~~a~~~~~~ 107 (137)
|++|..+..+
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 9999876543
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.45 E-value=5.6e-13 Score=105.20 Aligned_cols=79 Identities=19% Similarity=0.410 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec-CeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-g~~l~v 98 (137)
....++|||+|||.+++|++|+++|+++ .|.+|.+++| .++++++||||+|.+.++|+.||+ |++ ..|. ++.|.|
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng-~~i~~Gr~l~V 132 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNN-YEIRPGRLLGV 132 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCC-CeecCCccccc
Confidence 4456899999999999999999999999 9999999999 689999999999999999999999 999 7764 677666
Q ss_pred EecC
Q psy13181 99 DIAD 102 (137)
Q Consensus 99 ~~a~ 102 (137)
..+.
T Consensus 133 ~~S~ 136 (578)
T TIGR01648 133 CISV 136 (578)
T ss_pred cccc
Confidence 6553
No 28
>KOG0111|consensus
Probab=99.44 E-value=1.2e-13 Score=95.78 Aligned_cols=82 Identities=22% Similarity=0.409 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||++|..+++|..|...|-+| +|..|.++.|..++++++|+||+|...++|.+|+. |+. ..|-|+.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne-sEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE-SELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch-hhhcceeEEEee
Confidence 456899999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
|+|.+
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 99864
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=1.3e-12 Score=92.22 Aligned_cols=75 Identities=31% Similarity=0.354 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..++|||+||++.++|++|+++|+.| .|.+|.++++..+ .++|||+|.+++.++.|+.|+| ..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAllLnG-a~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAVLLSG-ATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHHhcCC-CeeCCceEEEEeCc
Confidence 45899999999999999999999999 9999999988543 5799999999999999999999 99999999999865
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.42 E-value=9.9e-13 Score=104.33 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
....+|||+||+..+++++|+++|++| .|.+|.++.+ .++.++|++||.|.+.++|.+|+. ||+ ..|+|++|.|.+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g-~~~~gk~l~V~~ 360 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHG-RMLGGKPLYVAL 360 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcC-CeeCCceeEEEe
Confidence 345789999999999999999999999 9999999998 578999999999999999999999 999 999999999999
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 98754
No 31
>KOG0145|consensus
Probab=99.42 E-value=9.8e-13 Score=93.27 Aligned_cols=83 Identities=23% Similarity=0.438 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...+.|.|.-||..+++++++.+|... +|+.|++++|+.+|.+.||+||.|..+++|++|+. |+| +.|..+.|+|.+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNG-LrLQ~KTIKVSy 117 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNG-LRLQNKTIKVSY 117 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcc-eeeccceEEEEe
Confidence 445789999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
|.|.+.
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 998764
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=2.3e-12 Score=74.32 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
+|+|.|||..+++++|+++|.++ .+..+.+..++ +...+++||+|.+.+.++.|+. +++ ..+.++.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~-~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNG-TKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCC-cEECCEEEeeC
Confidence 58999999999999999999999 89999888776 5678899999999999999999 999 99999988763
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.4e-12 Score=99.48 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCH--HHHHHHHH-hCCCeeecCeEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDV--ENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~--~~a~~al~-l~~~~~l~g~~l~v 98 (137)
....+|||+||++.+++++|...|..| .|..|.++ +.+| +|||||+|... .++.+||. |++ ..|.|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNG-AEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNG-CVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcC-CeecCceeEE
Confidence 345789999999999999999999999 99999999 4466 89999999976 78999999 999 9999999999
Q ss_pred EecCCC
Q psy13181 99 DIADGK 104 (137)
Q Consensus 99 ~~a~~~ 104 (137)
..|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999874
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.38 E-value=2.9e-12 Score=73.56 Aligned_cols=69 Identities=41% Similarity=0.711 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 30 VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 30 v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
|+|||..+++++|+.+|+++ .+..+.+..++.++.++++|||+|.+.+++..|+. +++ ..+.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~-~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG-KELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC-CeeCCcEEEeC
Confidence 57899999999999999999 89999998887778889999999999999999999 998 99999988873
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=3.7e-12 Score=90.80 Aligned_cols=77 Identities=36% Similarity=0.631 Sum_probs=73.9
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
..+|||+|||..+++++|.++|.+| .+..+.+..++.++..+++|||+|.+.+++..|+. +++ ..|.+++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~-~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG-KELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC-CeECCceeEeeccc
Confidence 5899999999999999999999999 89999999998899999999999999999999999 999 99999999999965
No 36
>KOG0144|consensus
Probab=99.36 E-value=6.7e-13 Score=99.48 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEEEEe
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRLDI 100 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~v~~ 100 (137)
.++|||+.|+..++|.+++++|++| .|++|.+++|.. +.++||+||.|.+.+.|.+|++ ||+..++.| .+|.|++
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 6899999999999999999999999 999999999976 7899999999999999999999 999677876 7899999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
|.+++.
T Consensus 203 ADtqkd 208 (510)
T KOG0144|consen 203 ADTQKD 208 (510)
T ss_pred cccCCC
Confidence 998764
No 37
>KOG0131|consensus
Probab=99.36 E-value=8.8e-13 Score=88.85 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
....+|||+||+..++++.|.++|-+. .+..+.+.+|+.+.+.+||||++|.++++++-|+. |+. ++|.|++|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~-VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM-VKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH-HHhcCceeEEEe
Confidence 456899999999999999999999999 99999999999999999999999999999999999 998 999999999999
Q ss_pred cCC
Q psy13181 101 ADG 103 (137)
Q Consensus 101 a~~ 103 (137)
+..
T Consensus 86 as~ 88 (203)
T KOG0131|consen 86 ASA 88 (203)
T ss_pred ccc
Confidence 873
No 38
>KOG0148|consensus
Probab=99.36 E-value=4.3e-12 Score=90.30 Aligned_cols=83 Identities=22% Similarity=0.425 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...-+||+.|..+++.++|++.|.+| .|.++++++|..|++++||+||.|.+.++|+.||. |+| .-|+.+.|+-.+|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnG-qWlG~R~IRTNWA 139 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNG-QWLGRRTIRTNWA 139 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCC-eeeccceeecccc
Confidence 35779999999999999999999999 99999999999999999999999999999999999 999 9999999999999
Q ss_pred CCCCCC
Q psy13181 102 DGKRND 107 (137)
Q Consensus 102 ~~~~~~ 107 (137)
..++..
T Consensus 140 TRKp~e 145 (321)
T KOG0148|consen 140 TRKPSE 145 (321)
T ss_pred ccCccc
Confidence 877633
No 39
>KOG0117|consensus
Probab=99.34 E-value=9.6e-12 Score=93.67 Aligned_cols=83 Identities=19% Similarity=0.408 Sum_probs=74.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee-cCeEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV-DGLQV 96 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l-~g~~l 96 (137)
.+....+.|||+.||.++.|++|.-+|++. .|-++.++.|+.+|.++|||||.|.+.+.|+.|++ ||. ..| .|+.|
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn-~Eir~GK~i 156 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNN-YEIRPGKLL 156 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhC-ccccCCCEe
Confidence 334677899999999999999999999999 99999999999999999999999999999999999 999 766 56888
Q ss_pred EEEecCC
Q psy13181 97 RLDIADG 103 (137)
Q Consensus 97 ~v~~a~~ 103 (137)
.|..+..
T Consensus 157 gvc~Sva 163 (506)
T KOG0117|consen 157 GVCVSVA 163 (506)
T ss_pred EEEEeee
Confidence 8877653
No 40
>KOG0108|consensus
Probab=99.33 E-value=3.4e-12 Score=97.65 Aligned_cols=80 Identities=33% Similarity=0.574 Sum_probs=76.7
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
..|||+|+|.+++|++|..+|+.. .|..+.++.|+.||+.+||+|++|.+.+.+..|++ |++ ..+.+++|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg-~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNG-AEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCC-cccCCceEEeecccc
Confidence 899999999999999999999999 99999999999999999999999999999999999 999 999999999999876
Q ss_pred CCC
Q psy13181 104 KRN 106 (137)
Q Consensus 104 ~~~ 106 (137)
+..
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 543
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.8e-11 Score=70.82 Aligned_cols=72 Identities=43% Similarity=0.741 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
+|+|++||..+++++|.++|+.+ .+..+.+..++.+ ...+++||+|.+.+++..|+. +++ ..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~-~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNG-KELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEeC
Confidence 48999999999999999999999 9999999887654 668899999999999999999 999 889999998864
No 42
>KOG0114|consensus
Probab=99.33 E-value=1.6e-11 Score=75.88 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe
Q psy13181 17 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 94 (137)
Q Consensus 17 ~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~ 94 (137)
..+.+..-.+.|||.|||..+|.++..++|.+| .|..|.+--.+. .+|.|||+|++..+|.+|++ |+| ..+.++
T Consensus 10 ~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg-~n~~~r 85 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSG-YNVDNR 85 (124)
T ss_pred CCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcc-cccCCc
Confidence 344555567899999999999999999999999 999998865544 48899999999999999999 999 999999
Q ss_pred EEEEEecCCC
Q psy13181 95 QVRLDIADGK 104 (137)
Q Consensus 95 ~l~v~~a~~~ 104 (137)
.+.|-+..+.
T Consensus 86 yl~vlyyq~~ 95 (124)
T KOG0114|consen 86 YLVVLYYQPE 95 (124)
T ss_pred eEEEEecCHH
Confidence 9999887653
No 43
>KOG0148|consensus
Probab=99.30 E-value=4.5e-11 Score=85.19 Aligned_cols=75 Identities=24% Similarity=0.453 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||+||+..++|++|++.|++| .|.+|.+..+ +||+||.|++.+.|..||. +|+ ..|.|+.|+|.+
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNn-tei~G~~VkCsW 234 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNN-TEIGGQLVRCSW 234 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcC-ceeCceEEEEec
Confidence 355899999999999999999999999 9999999876 4599999999999999999 999 999999999999
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
.+..
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 7744
No 44
>KOG4212|consensus
Probab=99.29 E-value=2.1e-11 Score=91.90 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
..+.+||.|||.++...+|++++... .|++|.++.|. ++++++|+.|+|++++.+++|++ |+. ..+.++.|.|+.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk-~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNK-YEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhh-ccccCceEEEec
Confidence 44679999999999999999999776 89999999986 59999999999999999999999 999 999999999998
Q ss_pred cCCCCCC
Q psy13181 101 ADGKRND 107 (137)
Q Consensus 101 a~~~~~~ 107 (137)
....+..
T Consensus 121 d~d~q~~ 127 (608)
T KOG4212|consen 121 DHDEQRD 127 (608)
T ss_pred cCchhhh
Confidence 8765543
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.28 E-value=3e-11 Score=94.39 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-h--CCCeeecCeEEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K--DGRITVDGLQVRLD 99 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l--~~~~~l~g~~l~v~ 99 (137)
++++|||+|||+.++|++|+++|++| .|..|.++.+ +++|||+|.+.++|++|+. + ++ ..|.|++|.|.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~-~~l~g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVP-IYIRGQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCC-ceEcCeEEEEE
Confidence 35789999999999999999999999 9999988754 3599999999999999998 5 67 89999999999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
++..++.
T Consensus 74 ~s~~~~~ 80 (481)
T TIGR01649 74 YSTSQEI 80 (481)
T ss_pred ecCCccc
Confidence 9986653
No 46
>KOG0117|consensus
Probab=99.27 E-value=1e-11 Score=93.48 Aligned_cols=73 Identities=23% Similarity=0.428 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...+.|||.||+.++||+.|+++|.+| .++.|..++| ||||.|.++++|.+|++ +++ ..|+|..|.|.+
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ng-keldG~~iEvtL 327 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNG-KELDGSPIEVTL 327 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcC-ceecCceEEEEe
Confidence 455789999999999999999999999 9999877755 99999999999999999 999 999999999999
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
|+|.
T Consensus 328 AKP~ 331 (506)
T KOG0117|consen 328 AKPV 331 (506)
T ss_pred cCCh
Confidence 9975
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.27 E-value=3.8e-11 Score=93.86 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=68.6
Q ss_pred CCceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 24 PPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 24 ~~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...+|||+||++ .+++++|+++|+.| .|..|.++.++ +++|||+|.+.++|..|+. |++ ..|.|+.|+|.+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng-~~l~g~~l~v~~ 347 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNG-VKLFGKPLRVCP 347 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEEE
Confidence 557999999998 69999999999999 99999998763 4799999999999999999 999 999999999999
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
++.+
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 48
>KOG0127|consensus
Probab=99.24 E-value=4e-11 Score=92.38 Aligned_cols=79 Identities=27% Similarity=0.482 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
.++|.|.|||+.|...+|+..|+.| .+.+|.+++.+. ++-+|||||.|....+|..||+ +++ .+|+|++|.|.||-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~-~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNG-NKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccC-ceecCceeEEeeec
Confidence 6899999999999999999999999 999999998776 4556999999999999999999 999 99999999999997
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
++-
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 664
No 49
>KOG0127|consensus
Probab=99.20 E-value=9e-11 Score=90.49 Aligned_cols=82 Identities=27% Similarity=0.437 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-h-----CCCeeecCeEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K-----DGRITVDGLQV 96 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l-----~~~~~l~g~~l 96 (137)
-..+|||.|||++++|++|...|++| .+.++.++.++.|+.+.|+|||.|.+...+.+||. . .+.+.|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 34899999999999999999999999 99999999999999999999999999999999998 4 12267899999
Q ss_pred EEEecCCCC
Q psy13181 97 RLDIADGKR 105 (137)
Q Consensus 97 ~v~~a~~~~ 105 (137)
+|..+-++.
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999998764
No 50
>KOG0109|consensus
Probab=99.20 E-value=2.7e-11 Score=87.03 Aligned_cols=72 Identities=24% Similarity=0.515 Sum_probs=67.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
.+|||+|||..+++.+|+.+|++| ++.+|.++++ |+||..++.+.++.++. ||+ .+|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhg-YtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHG-YTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccc-ceecceEEEEEeccc
Confidence 579999999999999999999999 9999999855 89999999999999999 999 999999999999988
Q ss_pred CCC
Q psy13181 104 KRN 106 (137)
Q Consensus 104 ~~~ 106 (137)
++.
T Consensus 74 Ksk 76 (346)
T KOG0109|consen 74 KSK 76 (346)
T ss_pred cCC
Confidence 753
No 51
>KOG0415|consensus
Probab=99.18 E-value=5.2e-11 Score=87.74 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
.++...|||-.|.+.++.+||.-+|+.| .|..|.+++|+.|+.+..||||+|.+.+++++|.- |+. +.|++++|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdN-vLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDN-VLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcc-eeeccceEEee
Confidence 4566789999999999999999999999 99999999999999999999999999999999998 999 99999999999
Q ss_pred ecCC
Q psy13181 100 IADG 103 (137)
Q Consensus 100 ~a~~ 103 (137)
++.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9875
No 52
>KOG0145|consensus
Probab=99.18 E-value=3.2e-10 Score=80.63 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||=||.++++|..|-++|.+| .+..+++++|..|.+.+||+||.+.+.++|..|+. |+| ..|.++.|.|.+
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG-y~lg~rvLQVsF 354 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG-YRLGDRVLQVSF 354 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC-ccccceEEEEEE
Confidence 456999999999999999999999999 99999999999999999999999999999999999 999 999999999998
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 7654
No 53
>KOG0146|consensus
Probab=99.17 E-value=6.1e-11 Score=84.57 Aligned_cols=82 Identities=22% Similarity=0.377 Sum_probs=74.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRLD 99 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~v~ 99 (137)
.+++|||+.|...-+|+|++.+|..| .|.+|.+++... +.++||+||.|.+..++++||. ||+...+-| +.|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999 999999998876 7899999999999999999999 999667766 779999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
++..+++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9987654
No 54
>KOG0116|consensus
Probab=99.17 E-value=2.7e-10 Score=86.91 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=66.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGK 104 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~~ 104 (137)
.+|||.|||+++++.+|.++|.+| .|....+....-.++...|+||+|.+...++.+|.-+- ..|++++|.|+...+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp-~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASP-LEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCc-cccCCeeEEEEecccc
Confidence 459999999999999999999999 88877554432123444799999999999999999667 9999999999998875
Q ss_pred CC
Q psy13181 105 RN 106 (137)
Q Consensus 105 ~~ 106 (137)
.+
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 44
No 55
>KOG0146|consensus
Probab=99.14 E-value=6.5e-11 Score=84.42 Aligned_cols=86 Identities=17% Similarity=0.347 Sum_probs=79.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
+..+.|||=.||.+..+.+|..+|-+| -|...++..|+.|-.++.|+||.|++..++++||. ||| +.|+.++|+|.+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNG-FQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNG-FQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcc-hhhhhhhhhhhh
Confidence 456899999999999999999999999 89999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCCCCCC
Q psy13181 101 ADGKRNDNK 109 (137)
Q Consensus 101 a~~~~~~~~ 109 (137)
.+++...|.
T Consensus 362 KRPkdanRP 370 (371)
T KOG0146|consen 362 KRPKDANRP 370 (371)
T ss_pred cCccccCCC
Confidence 988876654
No 56
>KOG0124|consensus
Probab=99.14 E-value=4.7e-11 Score=88.36 Aligned_cols=75 Identities=23% Similarity=0.414 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
++|||+.|.+++.|+.|+..|-+| .|..|.+.+|+.|+++++|+||+|+-.+.++-|++ ||+ .+++|+.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg-~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG-QMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc-ccccCccccccCC
Confidence 579999999999999999999999 99999999999999999999999999999999999 999 9999999999843
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=7.1e-10 Score=64.85 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=52.0
Q ss_pred HHHHHhcCc----CC-ceeEEE-EeecCCC--CCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 39 QGDVERFFP----EQ-KLVSVR-LVKDKET--DRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 39 e~~l~~~f~----~~-~i~~i~-~~~~~~t--~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
+++|+++|+ +| .+..|. ++.++.+ +.++|++||.|.+.++|.+|+. |++ ..+.|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g-~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNG-RYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCC-CEECCEEEEeC
Confidence 567888888 88 888885 6666666 8889999999999999999999 999 99999998763
No 58
>KOG0147|consensus
Probab=99.07 E-value=2.7e-10 Score=87.74 Aligned_cols=75 Identities=35% Similarity=0.576 Sum_probs=71.7
Q ss_pred EEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 28 AFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 28 l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
|||+||.+++++++|+..|++| .|..|.+.+|..||.++||+||+|.+.+.+.+|++ ||+ +.|-|+.|+|..-..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-felAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc-ceecCceEEEEEeee
Confidence 9999999999999999999999 99999999998899999999999999999999999 999 999999999987653
No 59
>KOG4205|consensus
Probab=99.06 E-value=7e-10 Score=81.81 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=76.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
...+|||++||..+++++++++|.+| .|..+.++.|..+.+.++|+||.|.+++.+..++...- +.|.++.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f-~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKF-HDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccce-eeecCceeeEeecc
Confidence 45699999999999999999999999 89999999999999999999999999999999988888 99999999999999
Q ss_pred CCCC
Q psy13181 103 GKRN 106 (137)
Q Consensus 103 ~~~~ 106 (137)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 8864
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.06 E-value=6.2e-10 Score=87.32 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=60.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC--cee-----EEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ--KLV-----SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQ 95 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~-----~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~ 95 (137)
...++|||+|||+.+++++|.++|.++ .+. .+..+.+....+.++||||+|.+.++|..||.|++ ..|.|..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g-~~~~g~~ 251 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDS-IIYSNVF 251 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCC-eEeeCce
Confidence 346899999999999999999999864 110 01111111123457899999999999999999999 9999999
Q ss_pred EEEEecC
Q psy13181 96 VRLDIAD 102 (137)
Q Consensus 96 l~v~~a~ 102 (137)
|+|....
T Consensus 252 l~v~r~~ 258 (509)
T TIGR01642 252 LKIRRPH 258 (509)
T ss_pred eEecCcc
Confidence 9997544
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=1.6e-09 Score=60.48 Aligned_cols=54 Identities=26% Similarity=0.593 Sum_probs=47.4
Q ss_pred HHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 42 VERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 42 l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
|.++|++| .|..+.+..+. ++++||+|.+.++|..|+. ||+ ..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~-~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNG-RQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTT-SEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEEEC
Confidence 57889999 99999887553 4699999999999999999 999 9999999999985
No 62
>KOG4208|consensus
Probab=99.01 E-value=1.3e-09 Score=74.97 Aligned_cols=79 Identities=19% Similarity=0.345 Sum_probs=71.7
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..-++|..+|..+.+..+..+|.++ .+..+.+.+++.||.+++||||+|++.+.|+.|.+ ||+ ..|.++.|.|.+-
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNN-YLl~e~lL~c~vm 127 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNN-YLLMEHLLECHVM 127 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhh-hhhhhheeeeEEe
Confidence 3568899999999999999999999 56667777999999999999999999999999999 999 9999999999987
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 765
No 63
>KOG0124|consensus
Probab=99.01 E-value=1.1e-09 Score=81.23 Aligned_cols=104 Identities=16% Similarity=0.335 Sum_probs=89.4
Q ss_pred CCccccCCccCCCCCCCCCCCCCC-----------CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecE
Q psy13181 1 MADYSYGGYPERYGRNQKTLPTEP-----------PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGF 68 (137)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~ 68 (137)
|+-.-.+|+..+.+++..-...++ =.+|||..+.++.+|+||+..|+.| .|.+|.+-+++.++.++||
T Consensus 175 MNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGy 254 (544)
T KOG0124|consen 175 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGY 254 (544)
T ss_pred hccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccce
Confidence 455556888888887655444332 2689999999999999999999999 9999999999999999999
Q ss_pred EEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCCCC
Q psy13181 69 CYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGKR 105 (137)
Q Consensus 69 ~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~~~ 105 (137)
+|++|.+.++...|+. ||- +.|+|..|+|-.+-..+
T Consensus 255 GfiEy~n~qs~~eAiasMNl-FDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 255 GFIEYNNLQSQSEAIASMNL-FDLGGQYLRVGKCVTPP 291 (544)
T ss_pred eeEEeccccchHHHhhhcch-hhcccceEecccccCCC
Confidence 9999999999999999 999 99999999998875443
No 64
>KOG0153|consensus
Probab=99.00 E-value=2.5e-09 Score=78.58 Aligned_cols=78 Identities=19% Similarity=0.398 Sum_probs=68.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH--hCCCeeecCeEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL--KDGRITVDGLQV 96 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~--l~~~~~l~g~~l 96 (137)
+..+...+|||++|...++|.+|++.|-+| .|..|.++... +||||+|.+.++|+.|.+ ++. +.|+|.+|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~-lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNK-LVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcce-eeecceEE
Confidence 334566899999999999999999999999 99999887543 499999999999999998 666 99999999
Q ss_pred EEEecCCC
Q psy13181 97 RLDIADGK 104 (137)
Q Consensus 97 ~v~~a~~~ 104 (137)
+|.|..+.
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999883
No 65
>KOG4206|consensus
Probab=98.96 E-value=2.7e-09 Score=74.32 Aligned_cols=77 Identities=25% Similarity=0.466 Sum_probs=70.0
Q ss_pred ceEEEcCCCCCCCHHHHHh----cCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 26 YTAFVGNLPNGITQGDVER----FFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~----~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
.||||.||+..+..++|+. +|++| .|.+|.... |.+.+|-|||.|.+.+.|-.|+. |+| ..+.|++++|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~g-fpFygK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQG-FPFYGKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcC-CcccCchhhee
Confidence 4999999999999998888 89999 899987764 56789999999999999999999 999 99999999999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
+|+.++.
T Consensus 86 yA~s~sd 92 (221)
T KOG4206|consen 86 YAKSDSD 92 (221)
T ss_pred cccCccc
Confidence 9998764
No 66
>KOG0109|consensus
Probab=98.95 E-value=1.7e-09 Score=77.93 Aligned_cols=90 Identities=17% Similarity=0.330 Sum_probs=75.4
Q ss_pred ccCCccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHH
Q psy13181 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al 83 (137)
+..+...+.+.+... .....+|+|+||.+.|+..+|+..|+++ .+.+|.++++ ++||.|+-.+.+..|+
T Consensus 60 tLhg~nInVeaSksK--sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 60 TLHGVNINVEASKSK--SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred eecceEEEEEecccc--CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHH
Confidence 344555555433322 4567899999999999999999999999 8999988865 8999999999999999
Q ss_pred H-hCCCeeecCeEEEEEecCCCC
Q psy13181 84 L-KDGRITVDGLQVRLDIADGKR 105 (137)
Q Consensus 84 ~-l~~~~~l~g~~l~v~~a~~~~ 105 (137)
. |++ ..++|+++.|.++.++=
T Consensus 130 r~l~~-~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 130 RGLDN-TEFQGKRMHVQLSTSRL 151 (346)
T ss_pred hcccc-cccccceeeeeeecccc
Confidence 9 999 99999999999998763
No 67
>KOG0131|consensus
Probab=98.95 E-value=8e-10 Score=74.71 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeE-EEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~-i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
.-...+||+||.++++|..|.+.|+.| .+.. ..++++..|+..++++|+.|.+.+.+.+|+. +++ ..+.++++.|.
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng-q~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG-QYLCNRPITVS 172 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc-chhcCCceEEE
Confidence 345799999999999999999999999 5444 3778899999999999999999999999999 999 99999999999
Q ss_pred ecCCC
Q psy13181 100 IADGK 104 (137)
Q Consensus 100 ~a~~~ 104 (137)
++..+
T Consensus 173 ya~k~ 177 (203)
T KOG0131|consen 173 YAFKK 177 (203)
T ss_pred EEEec
Confidence 98744
No 68
>KOG4205|consensus
Probab=98.95 E-value=9.9e-10 Score=81.02 Aligned_cols=82 Identities=22% Similarity=0.376 Sum_probs=74.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
...++||++|+++++++.|+..|.+| .+.+|.+++|+.++.+++|+||+|.+...+.++|.... +.|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-cccCCccccceecc
Confidence 56799999999999999999999999 99999999999999999999999999888888887655 88999999999988
Q ss_pred CCCC
Q psy13181 103 GKRN 106 (137)
Q Consensus 103 ~~~~ 106 (137)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7753
No 69
>KOG0123|consensus
Probab=98.88 E-value=8.7e-09 Score=78.06 Aligned_cols=77 Identities=23% Similarity=0.490 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
+..|||.||+++++..+|.++|+.| .|..|.+..+.. | ++++ ||.|+++++|.+|++ +++ ..+.+++|.|....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng-~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNG-MLLNGKKIYVGLFE 151 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcC-cccCCCeeEEeecc
Confidence 3449999999999999999999999 999999999875 4 8889 999999999999999 999 99999999999887
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
.++
T Consensus 152 ~~~ 154 (369)
T KOG0123|consen 152 RKE 154 (369)
T ss_pred chh
Confidence 654
No 70
>KOG0132|consensus
Probab=98.86 E-value=6.5e-09 Score=83.13 Aligned_cols=74 Identities=24% Similarity=0.486 Sum_probs=67.9
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
++||||+.|+..++|.||..+|+.| .|..|.++-. ++||||.+...++|++||. |.. ..+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n-~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSN-VKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhc-ccccceeeEEeeec
Confidence 4899999999999999999999999 9999988754 5699999999999999999 998 99999999999987
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
.+-
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 653
No 71
>KOG4211|consensus
Probab=98.86 E-value=1.2e-08 Score=77.97 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
....-|.+.+|||++|++||++||+.+.|..+.+. +.+++..|.|||+|.++++++.||+.+. ..+..+.|.|.-+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~AlkkdR-~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCGIENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKKDR-ESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCceeEEEEe--ccCCCcCcceEEEeechHHHHHHHHhhH-HHhCCceEEEEccC
Confidence 45578899999999999999999999888886554 5578999999999999999999999998 89999999999987
Q ss_pred CCCC
Q psy13181 103 GKRN 106 (137)
Q Consensus 103 ~~~~ 106 (137)
+.+.
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 6654
No 72
>KOG0533|consensus
Probab=98.79 E-value=2.6e-08 Score=71.11 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.+..+.+|+|.|||..+.++||+++|..| .+..+.+-.++ +|.+.|.|.|.|...++|.++++ +++ +.|+|..+++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~~mk~ 156 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNG-VALDGRPMKI 156 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcC-cccCCceeee
Confidence 45566889999999999999999999999 88777777666 48889999999999999999999 999 9999999998
Q ss_pred EecCCC
Q psy13181 99 DIADGK 104 (137)
Q Consensus 99 ~~a~~~ 104 (137)
.+..+.
T Consensus 157 ~~i~~~ 162 (243)
T KOG0533|consen 157 EIISSP 162 (243)
T ss_pred EEecCc
Confidence 887644
No 73
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.70 E-value=1.3e-07 Score=58.52 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec----CeEEE
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD----GLQVR 97 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~----g~~l~ 97 (137)
+||.|.|||-..+.++|.+++... ....+.++.|..+..+.|||||.|.+.+.+..... +++ ..+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g-~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNG-KKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcC-CccccCCCCcEEE
Confidence 689999999999999998888543 56667888888889999999999999999999999 999 8775 36677
Q ss_pred EEecC
Q psy13181 98 LDIAD 102 (137)
Q Consensus 98 v~~a~ 102 (137)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 77765
No 74
>KOG0123|consensus
Probab=98.68 E-value=8e-08 Score=72.87 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=66.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
..|||+ ++++|..|.++|++. .+..+.+++|. | +.|||||.|.+..+|++||. ++. ..|.|+++++-|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~-~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNF-DVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCC-cccCCcEEEeehhcc
Confidence 358888 999999999999999 99999999998 6 89999999999999999999 999 999999999999864
Q ss_pred C
Q psy13181 104 K 104 (137)
Q Consensus 104 ~ 104 (137)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 4
No 75
>KOG1457|consensus
Probab=98.67 E-value=6.1e-07 Score=62.87 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=64.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEee-cCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec---CeEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVK-DKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD---GLQVR 97 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~-~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~---g~~l~ 97 (137)
..++|||.+||.++..-+|+.+|..| ..+...+-. ++.....+-++|++|.+.+.|.+|+. ||| +.++ +..|.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNG-vrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNG-VRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcC-eeeccccCceeE
Confidence 46899999999999999999999999 655554422 22222334689999999999999999 999 9887 57788
Q ss_pred EEecCCCC
Q psy13181 98 LDIADGKR 105 (137)
Q Consensus 98 v~~a~~~~ 105 (137)
++++++..
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 88887543
No 76
>KOG0226|consensus
Probab=98.65 E-value=1.3e-08 Score=72.11 Aligned_cols=82 Identities=24% Similarity=0.449 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
..+.+||.+.|.-+++.+.|-..|.+| ......+++++.|++++||+||.|.+..++..|+. |++ ..++.+.|+++-
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g-kyVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG-KYVGSRPIKLRK 266 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc-cccccchhHhhh
Confidence 356899999999999999999999999 77778889999999999999999999999999999 999 999999999887
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
+.++.
T Consensus 267 S~wke 271 (290)
T KOG0226|consen 267 SEWKE 271 (290)
T ss_pred hhHHh
Confidence 76655
No 77
>KOG4211|consensus
Probab=98.65 E-value=1.6e-07 Score=71.98 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ce-eEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KL-VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i-~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
....|.+.+||+.|+++||.+||... -+ ..|.++.++. +++.+.|||.|++.+.+++||..|. ..|+.+.|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhr-e~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHR-ENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHH-HhhccceEEeehh
Confidence 55789999999999999999999877 22 2355666654 6789999999999999999999777 8888999999876
Q ss_pred CC
Q psy13181 102 DG 103 (137)
Q Consensus 102 ~~ 103 (137)
.-
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 53
No 78
>KOG0110|consensus
Probab=98.65 E-value=1.1e-07 Score=75.50 Aligned_cols=77 Identities=34% Similarity=0.533 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCC---CeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~---~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
+|||.||++.++.+++...|... .|..+.+...+... -+-||+||+|.+.++|++|+. |+| ..|+|+.|.|.++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg-tvldGH~l~lk~S 595 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG-TVLDGHKLELKIS 595 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC-ceecCceEEEEec
Confidence 49999999999999999999999 88888776554321 234999999999999999999 999 9999999999999
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
..+
T Consensus 596 ~~k 598 (725)
T KOG0110|consen 596 ENK 598 (725)
T ss_pred cCc
Confidence 833
No 79
>KOG0110|consensus
Probab=98.64 E-value=3.1e-08 Score=78.61 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|+|.|||+..+-.+++.+|..| .+..|.++.....+.++||+||+|-+.+++.+|+. |.. .-|.|++|.+.|+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~S-THlyGRrLVLEwA 690 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGS-THLYGRRLVLEWA 690 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcc-cceechhhheehh
Confidence 35799999999999999999999999 99999988775567789999999999999999999 997 9999999999999
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
...
T Consensus 691 ~~d 693 (725)
T KOG0110|consen 691 KSD 693 (725)
T ss_pred ccc
Confidence 865
No 80
>KOG4661|consensus
Probab=98.62 E-value=9.8e-08 Score=74.63 Aligned_cols=81 Identities=12% Similarity=0.254 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..+.|||.+|...+...+|+.+|++| .|+-..|+.+-.+.-.+.|+||++.+..+|.+||. ||. ..|.|+.|.|..+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr-TELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR-TELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh-hhhcceeeeeeec
Confidence 45789999999999999999999999 88888888876666778899999999999999999 999 9999999999998
Q ss_pred CCCC
Q psy13181 102 DGKR 105 (137)
Q Consensus 102 ~~~~ 105 (137)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 8653
No 81
>KOG4209|consensus
Probab=98.58 E-value=3.4e-07 Score=65.29 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=76.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 98 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v 98 (137)
........+||+|+...++.+++...|+.| .+..+.+..++.++..++++||+|.+.+.++.++.|++ ..|.+..+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~g-s~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDG-SEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCC-ccccccccee
Confidence 334567899999999999999999999999 99888899998888899999999999999999999999 9999999999
Q ss_pred EecCCC
Q psy13181 99 DIADGK 104 (137)
Q Consensus 99 ~~a~~~ 104 (137)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987755
No 82
>KOG4212|consensus
Probab=98.51 E-value=2.4e-07 Score=70.41 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=63.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||.|||.++|...|++-|..| .+....++. ++++++ .|.|.++++|+.|+. |++ ..|+++.|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mng-s~l~Gr~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNG-SRLDGRNIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhcc-CcccCceeeee
Confidence 4456789999999999999999999999 777776643 466665 899999999999999 999 99999999998
Q ss_pred ec
Q psy13181 100 IA 101 (137)
Q Consensus 100 ~a 101 (137)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 74
No 83
>KOG0106|consensus
Probab=98.46 E-value=2.8e-07 Score=64.63 Aligned_cols=74 Identities=32% Similarity=0.545 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
..|||++||..+.+.+|..+|+.| .+..+.+. .+|+||+|.+..+|..|+- +++ ..|.+..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~-~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDG-KELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcC-ceecceeeeeecccc
Confidence 368999999999999999999999 88887663 3488999999999999999 999 999998888888876
Q ss_pred CCCCC
Q psy13181 104 KRNDN 108 (137)
Q Consensus 104 ~~~~~ 108 (137)
....+
T Consensus 73 ~~~~~ 77 (216)
T KOG0106|consen 73 KRRGR 77 (216)
T ss_pred ccccc
Confidence 54444
No 84
>KOG4849|consensus
Probab=98.36 E-value=1e-06 Score=65.36 Aligned_cols=75 Identities=16% Similarity=0.308 Sum_probs=65.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
....++||+||-|++|++||.+.+... ++.+++++.++.+|.++|||++...+..++++.++ |.. ..|.|..-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~-k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPT-KTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccc-ceecCCCCee
Confidence 345789999999999999999988765 78888999999999999999999999999999999 888 8888855443
No 85
>KOG1548|consensus
Probab=98.33 E-value=3.8e-06 Score=62.15 Aligned_cols=77 Identities=21% Similarity=0.369 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-cee--------EEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 93 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~--------~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g 93 (137)
....|||+|||.++|.+++..+|++| .|. .|.+-++.. |..+|=+++.|-..+++.-|+. |++ ..|.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe-~~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDE-DELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCc-ccccC
Confidence 34679999999999999999999988 432 356666654 8889999999999999999999 999 99999
Q ss_pred eEEEEEecC
Q psy13181 94 LQVRLDIAD 102 (137)
Q Consensus 94 ~~l~v~~a~ 102 (137)
+.|+|..|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999886
No 86
>KOG4454|consensus
Probab=98.32 E-value=2.1e-07 Score=64.88 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||.|+...++|+.|.++|-+- .+.++.+..++. ++.+ ||||.|.++.++.-|+. ++| ..+.+..+.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng-~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENG-DDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhccc-chhccchhhccc
Confidence 456899999999999999999999888 788888877665 4555 99999999999999999 999 988888877776
Q ss_pred cCC
Q psy13181 101 ADG 103 (137)
Q Consensus 101 a~~ 103 (137)
...
T Consensus 84 r~G 86 (267)
T KOG4454|consen 84 RCG 86 (267)
T ss_pred ccC
Confidence 544
No 87
>KOG0151|consensus
Probab=98.30 E-value=3.8e-06 Score=67.19 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCC---CCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKE---TDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~---t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.+..+.+||+||++.++|+.|...|..| .+..+.+++.+. ....+.|+||.|-+..++++|+. |++ ..+....+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg-~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG-IIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc-eeeeeeee
Confidence 4566899999999999999999999999 787777665432 23456799999999999999999 999 99999999
Q ss_pred EEEecCC
Q psy13181 97 RLDIADG 103 (137)
Q Consensus 97 ~v~~a~~ 103 (137)
++-|+++
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999854
No 88
>KOG4660|consensus
Probab=98.28 E-value=7.2e-07 Score=69.32 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=61.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
..+..+|+|-|||..+++++|+.+|+.| +|..|... ...++.+||+|.+..+|++|++ |++ ..+.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~-~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNR-REIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHH-HHhhhhhhc
Confidence 4567899999999999999999999999 88886553 3457799999999999999999 999 999998887
No 89
>KOG1995|consensus
Probab=98.23 E-value=3.8e-06 Score=62.32 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ce--------eEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KL--------VSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 91 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i--------~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l 91 (137)
....-+|||-+||..+++++|.++|.++ .| ..|.+-+++.|++.++-|.|.|.+...|++|+. +++ ..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag-kdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG-KDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc-ccc
Confidence 3455789999999999999999999887 33 346677888999999999999999999999999 999 999
Q ss_pred cCeEEEEEecCCCC
Q psy13181 92 DGLQVRLDIADGKR 105 (137)
Q Consensus 92 ~g~~l~v~~a~~~~ 105 (137)
.+..|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999887554
No 90
>KOG4210|consensus
Probab=98.04 E-value=1.1e-05 Score=59.28 Aligned_cols=90 Identities=31% Similarity=0.516 Sum_probs=74.3
Q ss_pred CceEE-EcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 25 PYTAF-VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~-v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..+++ |.+|+..+++++|+..|..+ .|..+.+..++.++...+++++.|........++..+. ..+.+..+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQT-RSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhccc-CcccCcccccccCC
Confidence 34555 99999999999999999888 89999999999999999999999999888888777644 88889999999988
Q ss_pred CCCCCCCCCCCCC
Q psy13181 103 GKRNDNKGGFNNK 115 (137)
Q Consensus 103 ~~~~~~~~~~~~~ 115 (137)
+++..-...++++
T Consensus 263 ~~~~~~~~~~~~~ 275 (285)
T KOG4210|consen 263 PRPKSDGGLFGNR 275 (285)
T ss_pred CCccccccccccc
Confidence 7765544443433
No 91
>KOG0120|consensus
Probab=98.03 E-value=4.7e-06 Score=64.98 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
....+++|++||...++.++.+++..| .+....++.+..++-+++|||.+|.+......|+. |+| ..++++.|.|..
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnG-m~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNG-MQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccch-hhhcCceeEeeh
Confidence 345789999999999999999999999 88888889998889999999999999999999999 999 999999999998
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
|...
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 8643
No 92
>KOG0147|consensus
Probab=97.99 E-value=2.3e-06 Score=66.51 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..+++|+..|...+++-+|.+||+.+ .|..|.++.|+.++.++|.+||+|.+.+++..||.|.| .-+.|.+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsG-qrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSG-QRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcC-CcccCceeEecccH
Confidence 45789999999999999999999999 99999999999999999999999999999999999999 99999999999876
Q ss_pred CCCCC
Q psy13181 103 GKRND 107 (137)
Q Consensus 103 ~~~~~ 107 (137)
..++.
T Consensus 257 aeknr 261 (549)
T KOG0147|consen 257 AEKNR 261 (549)
T ss_pred HHHHH
Confidence 55544
No 93
>KOG1457|consensus
Probab=97.94 E-value=8.9e-06 Score=57.14 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 91 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l 91 (137)
.....+|||.||..+|+|++|+.+|+.| ....+.+. .+ .|.. .+|++|+..+.+..|+. |+| ..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~-~g~~--vaf~~~~~~~~at~am~~lqg-~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR-GGMP--VAFADFEEIEQATDAMNHLQG-NLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC-CCcc--eEeecHHHHHHHHHHHHHhhc-cee
Confidence 3455789999999999999999999999 65544442 22 2433 79999999999999999 998 443
No 94
>KOG1365|consensus
Probab=97.88 E-value=1.8e-05 Score=59.50 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC--ceeE--EEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ--KLVS--VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~--i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
...+|.+.+||.+.+.+||..||..| .|.. |.|+.+.. |...|.|||+|.+.+.+.+|.. .+. ..+..+.|+|
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk-~~mk~RYiEv 356 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHK-KLMKSRYIEV 356 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHH-hhcccceEEE
Confidence 35689999999999999999999998 5555 78887754 8889999999999999999998 887 6667889999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
..+..++
T Consensus 357 fp~S~ee 363 (508)
T KOG1365|consen 357 FPCSVEE 363 (508)
T ss_pred eeccHHH
Confidence 8877654
No 95
>KOG1190|consensus
Probab=97.84 E-value=9.3e-05 Score=56.14 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=64.3
Q ss_pred CceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 25 PYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 25 ~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...|.|.||.+ .+|.+.|.-+|.-| ++..|.++.++. ..|+|.+.+.+.|+-|++ |+| ..|.|++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g-~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEG-HKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhc-ceecCceEEEeec
Confidence 46788888864 58999999999999 999999988764 379999999999999999 999 9999999999998
Q ss_pred C
Q psy13181 102 D 102 (137)
Q Consensus 102 ~ 102 (137)
+
T Consensus 371 K 371 (492)
T KOG1190|consen 371 K 371 (492)
T ss_pred c
Confidence 7
No 96
>KOG4206|consensus
Probab=97.80 E-value=0.00013 Score=51.21 Aligned_cols=75 Identities=19% Similarity=0.383 Sum_probs=62.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec-CeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-g~~l~v 98 (137)
.++...+|+.|||.+++.+.+..+|.+| ...++.++... .+.|||+|.+...+..|.. +++ ..+- ...+.|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~-~~it~~~~m~i 216 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQG-FKITKKNTMQI 216 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhcc-ceeccCceEEe
Confidence 3456789999999999999999999999 88888887543 4589999999999899988 888 7765 667777
Q ss_pred EecC
Q psy13181 99 DIAD 102 (137)
Q Consensus 99 ~~a~ 102 (137)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6654
No 97
>KOG4307|consensus
Probab=97.77 E-value=0.00014 Score=58.62 Aligned_cols=73 Identities=27% Similarity=0.409 Sum_probs=62.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
+.|-+.|+|+.++-+||.+||..| ...+|.+.+. +.|+.+|.|-|.|++.++|.+|.. |++ ..|.++.|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~-~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDG-QKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhcccc-CcccceeEEEEe
Confidence 578889999999999999999999 4455554443 458999999999999999999999 999 999999998875
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.73 E-value=0.00016 Score=45.48 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCC----CeeecCeEEEEE
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDG----RITVDGLQVRLD 99 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~----~~~l~g~~l~v~ 99 (137)
..|+|.+++..++.++|+..|+++ .|.+|.+...-. .|+|.|.+.+.|+.++. +.. .+.+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357888899999999999999999 999998865432 79999999999999887 432 156677666666
Q ss_pred ec
Q psy13181 100 IA 101 (137)
Q Consensus 100 ~a 101 (137)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 99
>KOG0129|consensus
Probab=97.58 E-value=0.00033 Score=54.52 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=65.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCc-CC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeec----Ce
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFP-EQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD----GL 94 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~-~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~----g~ 94 (137)
+-++.+||||++||.-++.++|..+|. -| .|..+.+-.|++-...+|-+-|.|++.++..+||+.-- +.|+ .+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarF-vql~h~d~~K 444 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARF-VQLDHTDIDK 444 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhhe-EEEeccccce
Confidence 345678999999999999999999998 56 89999998887778899999999999999999997433 4443 35
Q ss_pred EEEEEecC
Q psy13181 95 QVRLDIAD 102 (137)
Q Consensus 95 ~l~v~~a~ 102 (137)
+|.|+..-
T Consensus 445 RVEIkPYv 452 (520)
T KOG0129|consen 445 RVEIKPYV 452 (520)
T ss_pred eeeeccee
Confidence 66666544
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.55 E-value=0.00024 Score=42.62 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=44.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcCc----CC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 26 YTAFVGNLPNGITQGDVERFFP----EQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~----~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.-|+|.|||.+.+...|+.-+. -+ .+..| . .+.|+|.|.+.+.|..|++ |++ -.+-|.+|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmeg-EdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEG-EDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT---SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcc-cccccceEEE
Confidence 4689999999999887766665 45 44433 1 2479999999999999999 999 9999999999
Q ss_pred EecC
Q psy13181 99 DIAD 102 (137)
Q Consensus 99 ~~a~ 102 (137)
.+..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 9874
No 101
>KOG0106|consensus
Probab=97.46 E-value=0.00011 Score=51.68 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=62.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 18 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
...+....+.+.|.+++..+++.+|.+.|+++ .+..... ..+++||.|+...++..|++ |++ ..+.++.
T Consensus 92 ~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~-~~~~~~~ 162 (216)
T KOG0106|consen 92 YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDG-KKLNGRR 162 (216)
T ss_pred cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccc-hhhcCce
Confidence 44456677889999999999999999999999 6533322 24489999999999999999 999 9999999
Q ss_pred EEEEecC
Q psy13181 96 VRLDIAD 102 (137)
Q Consensus 96 l~v~~a~ 102 (137)
|.+....
T Consensus 163 l~~~~~~ 169 (216)
T KOG0106|consen 163 ISVEKNS 169 (216)
T ss_pred eeecccC
Confidence 9995544
No 102
>KOG1365|consensus
Probab=97.39 E-value=0.00015 Score=54.74 Aligned_cols=76 Identities=24% Similarity=0.187 Sum_probs=59.3
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-----ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEE
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-----KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-----~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~ 99 (137)
--.|.+.+||+++++.|+..||.+- ..+.|.++..+ .++.+|-|||.|..+++++.||..|. ..|+-+.|++.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khr-q~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHR-QNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHH-HHHhHHHHHHH
Confidence 3567788999999999999999632 45566666554 47889999999999999999998776 66666666665
Q ss_pred ecC
Q psy13181 100 IAD 102 (137)
Q Consensus 100 ~a~ 102 (137)
.+.
T Consensus 239 RST 241 (508)
T KOG1365|consen 239 RST 241 (508)
T ss_pred HHh
Confidence 544
No 103
>KOG1190|consensus
Probab=97.25 E-value=0.0015 Score=49.84 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC-eEEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG-LQVRLD 99 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g-~~l~v~ 99 (137)
++..++.+.|+|.+++|++++..|..- ...+..... ++.+.++++.+.+.+++-.|+- +|. ..+.. .-++|.
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hn-h~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHN-HYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhcccccc-ccCCCCceEEEE
Confidence 456799999999999999999999876 443332222 3345599999999999999888 988 77766 489999
Q ss_pred ecCC
Q psy13181 100 IADG 103 (137)
Q Consensus 100 ~a~~ 103 (137)
+++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 8764
No 104
>KOG0129|consensus
Probab=97.24 E-value=0.0021 Score=50.21 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=46.7
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCC---CCCeec---EEEEEEcCHHHHHHHHH
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKE---TDRFKG---FCYVEFVDVENLRQALL 84 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~---t~~~~g---~~fv~f~~~~~a~~al~ 84 (137)
.++|||++||+.++|++|...|..|....+.+..... ---..| |+|+.|+++.++...+.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 4799999999999999999999999555566653211 112245 99999999999888776
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.14 E-value=0.0015 Score=48.80 Aligned_cols=78 Identities=15% Similarity=0.352 Sum_probs=58.4
Q ss_pred ceEEEcCCCCCCCHHH----H--HhcCcCC-ceeEEEEeecCCC-CCeecE--EEEEEcCHHHHHHHHH-hCCCeeecCe
Q psy13181 26 YTAFVGNLPNGITQGD----V--ERFFPEQ-KLVSVRLVKDKET-DRFKGF--CYVEFVDVENLRQALL-KDGRITVDGL 94 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~----l--~~~f~~~-~i~~i~~~~~~~t-~~~~g~--~fv~f~~~~~a~~al~-l~~~~~l~g~ 94 (137)
.-+||-+||+.+..++ | .++|.+| .|..|.+.+.-.+ -...++ .+|.|.+.++|..||. .++ ..++|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg-s~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG-SLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc-ccccCc
Confidence 4578888988776665 2 5678899 8988876543211 111222 4999999999999999 999 999999
Q ss_pred EEEEEecCCC
Q psy13181 95 QVRLDIADGK 104 (137)
Q Consensus 95 ~l~v~~a~~~ 104 (137)
.|++.+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997754
No 106
>KOG4307|consensus
Probab=96.98 E-value=0.0013 Score=53.18 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=66.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeE-EEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe
Q psy13181 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 94 (137)
Q Consensus 18 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~-i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~ 94 (137)
.+.+......|||..||..+++.++.++|... .+++ |.+.+.+ +++.++.|||.|..+.+...|+. .+. ..++.+
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k-~y~G~r 504 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTK-FYPGHR 504 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccc-cccCce
Confidence 44556677899999999999999999999887 5555 6665555 46778899999999888888777 666 777778
Q ss_pred EEEEEecC
Q psy13181 95 QVRLDIAD 102 (137)
Q Consensus 95 ~l~v~~a~ 102 (137)
.|+|+...
T Consensus 505 ~irv~si~ 512 (944)
T KOG4307|consen 505 IIRVDSIA 512 (944)
T ss_pred EEEeechh
Confidence 88887644
No 107
>KOG0105|consensus
Probab=96.89 E-value=0.026 Score=38.95 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=53.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 91 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l 91 (137)
++.......|.|.+||++.+.+||++.+.+- .+....+.+|- .+.|+|-..++.+-|+. |+. ..+
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~-~~~ 175 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDD-QKF 175 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhcc-ccc
Confidence 3344566899999999999999999999888 88777776653 78999999999999998 776 444
No 108
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.82 E-value=0.011 Score=35.46 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hC
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD 86 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~ 86 (137)
.+.+..+|. +|.+|...||.++|+.|+-..|.++-| | .|||.+.+.+.+..++. +.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND--T-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT--T-----EEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC--C-----cEEEEeecHHHHHHHHHHhc
Confidence 344566666 999999999999999995556777654 2 79999999999998877 54
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.81 E-value=0.01 Score=37.00 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=48.6
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEE-EeecC------CCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCe-E
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVR-LVKDK------ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL-Q 95 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~-~~~~~------~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~-~ 95 (137)
...|.|-++|+. ....|...|++| .|.+.. +.++. .......+..|.|++..+|.+||..|| ..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG-~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNG-TIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTT-EEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCC-eEEcCcEE
Confidence 456888899988 455688889999 877664 11100 001223489999999999999999999 999875 4
Q ss_pred EEEEec
Q psy13181 96 VRLDIA 101 (137)
Q Consensus 96 l~v~~a 101 (137)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 556655
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.67 E-value=0.0041 Score=34.12 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=39.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHH
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al 83 (137)
+.|-|.+.+++..+.. ...|.+| .|..+.+.. ...+.+|.|.+..++++||
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4688889998877664 4477789 999887752 2338999999999999885
No 111
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.53 E-value=0.012 Score=33.29 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC----ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ----KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~----~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~ 84 (137)
.+-+|+|.++.. .+.++|+.+|..| ....|.++-|. .|-|.|.+.+.|.+||.
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 346799999854 7778899998876 67788888764 58899999999999986
No 112
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.36 E-value=0.031 Score=38.37 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=47.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC--ce---eEEEEeecCC--CCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC-
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ--KL---VSVRLVKDKE--TDRFKGFCYVEFVDVENLRQALL-KDGRITVDG- 93 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i---~~i~~~~~~~--t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g- 93 (137)
....+|.|++||+..+|+++...+..+ .. ..+.-..... ......-|+|.|.+.+++..... ++| ..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g-~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG-HVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT-EEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC-cEEECC
Confidence 345699999999999999999988773 32 2222111111 11223568999999999999998 999 76644
Q ss_pred ----eEEEEEecC
Q psy13181 94 ----LQVRLDIAD 102 (137)
Q Consensus 94 ----~~l~v~~a~ 102 (137)
....|++|.
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 445666654
No 113
>KOG2193|consensus
Probab=96.34 E-value=0.0033 Score=48.25 Aligned_cols=72 Identities=22% Similarity=0.398 Sum_probs=59.0
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
++|++||.+.++..+|...|... ....-.++ ..+|+|+...+...+.++++ +++...+.|+++.+..+-+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 68999999999999999999765 22222222 24599999999999999999 9987899999999999877
Q ss_pred CC
Q psy13181 104 KR 105 (137)
Q Consensus 104 ~~ 105 (137)
+.
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 64
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.20 E-value=0.027 Score=37.36 Aligned_cols=72 Identities=26% Similarity=0.386 Sum_probs=47.0
Q ss_pred CCceEEEcCCC------CCCCHH---HHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecC
Q psy13181 24 PPYTAFVGNLP------NGITQG---DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG 93 (137)
Q Consensus 24 ~~~~l~v~nlp------~~~~e~---~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g 93 (137)
+..+|.|.=+. ....++ +|.+.|..| .+.-++++-+ .-.|+|.+.+.|.+|+.+++ ..++|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg-~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDG-IQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCC-SEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCC-cEECC
Confidence 44566665443 123332 555566667 6555555432 57899999999999999999 99999
Q ss_pred eEEEEEecCCC
Q psy13181 94 LQVRLDIADGK 104 (137)
Q Consensus 94 ~~l~v~~a~~~ 104 (137)
+.|+|++..+.
T Consensus 97 ~~l~i~LKtpd 107 (146)
T PF08952_consen 97 RTLKIRLKTPD 107 (146)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEeCCcc
Confidence 99999997764
No 115
>KOG1456|consensus
Probab=96.20 E-value=0.054 Score=41.23 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCC-CCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 24 PPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 24 ~~~~l~v~nlp~~-~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
+...+.|-+|... +..+-|..+|..| .++.|.+++.+ .+.|.|++.+...+++|+. |++ ..+=|.+|.|..
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn-~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNN-IPLFGGKLNVCV 359 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhcc-CccccceEEEee
Confidence 4567888899865 5667789999999 99999998764 4589999999999999999 999 878888899888
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
++-.
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 7643
No 116
>KOG0120|consensus
Probab=96.18 E-value=0.025 Score=44.72 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=48.0
Q ss_pred HHHhcCcCC-ceeEEEEeecCC---CCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCCC
Q psy13181 41 DVERFFPEQ-KLVSVRLVKDKE---TDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGK 104 (137)
Q Consensus 41 ~l~~~f~~~-~i~~i~~~~~~~---t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~~ 104 (137)
+++..+..| .|..|.+.++.. -....|..||+|.+.++++.|+. |+| .++.++.|...|....
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~G-rKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTG-RKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccC-ceeCCcEEEEEecCHH
Confidence 334445567 777777766522 12335789999999999999999 999 9999999999987654
No 117
>KOG1456|consensus
Probab=96.16 E-value=0.044 Score=41.68 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCceEEEc--CCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEE
Q psy13181 24 PPYTAFVG--NLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVR 97 (137)
Q Consensus 24 ~~~~l~v~--nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~ 97 (137)
..+.|.+. |--..+|.+.|..+.-.. .+..|.+++. ++. .|.|+|++.+.|++|.. ||| ..|.. ..|+
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNG-ADIYsGCCTLK 192 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNG-ADIYSGCCTLK 192 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhccc-ccccccceeEE
Confidence 33444433 444568888899888888 8888877754 333 59999999999999999 999 77654 7799
Q ss_pred EEecCCCC
Q psy13181 98 LDIADGKR 105 (137)
Q Consensus 98 v~~a~~~~ 105 (137)
|++|+|.+
T Consensus 193 IeyAkP~r 200 (494)
T KOG1456|consen 193 IEYAKPTR 200 (494)
T ss_pred EEecCcce
Confidence 99999864
No 118
>KOG2416|consensus
Probab=96.14 E-value=0.0055 Score=48.84 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=61.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee---cCe
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV---DGL 94 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l---~g~ 94 (137)
.......|+|.||-.-+|.-+|+.+|..- .|... |+ | +-+.+|||.|.+.++|.+... ||+ +.| +.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~Alhn-V~WP~sNPK 512 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHN-VQWPPSNPK 512 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhc-cccCCCCCc
Confidence 45567899999999999999999999854 44444 32 2 335589999999999999999 999 877 457
Q ss_pred EEEEEecCCCC
Q psy13181 95 QVRLDIADGKR 105 (137)
Q Consensus 95 ~l~v~~a~~~~ 105 (137)
.|.+.|.....
T Consensus 513 ~L~adf~~~de 523 (718)
T KOG2416|consen 513 HLIADFVRADE 523 (718)
T ss_pred eeEeeecchhH
Confidence 78888876543
No 119
>KOG0128|consensus
Probab=95.81 E-value=0.0043 Score=51.12 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
...++|.|+|+..|.++++.++..+ .+..+.++..+. ++.+|.+++.|.++.++..++. .+. ..+...-+.|..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~-~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDV-AGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchh-hhhhhcCccccccC
Confidence 4689999999999999999999999 888887777664 8999999999999999999988 887 77777777887766
Q ss_pred C
Q psy13181 103 G 103 (137)
Q Consensus 103 ~ 103 (137)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 5
No 120
>KOG1548|consensus
Probab=95.76 E-value=0.052 Score=40.79 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=55.7
Q ss_pred CCCCceEEEcCC--C--CCCCH-------HHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC
Q psy13181 22 TEPPYTAFVGNL--P--NGITQ-------GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR 88 (137)
Q Consensus 22 ~~~~~~l~v~nl--p--~~~~e-------~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~ 88 (137)
....++|.|.|+ | ...+. ++|..-..+| .+..|.|. ++. +.|.+.|.|.+.+.|..|+. |+|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~h---PdGvvtV~f~n~eeA~~ciq~m~G- 336 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DRH---PDGVVTVSFRNNEEADQCIQTMDG- 336 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-ccC---CCceeEEEeCChHHHHHHHHHhcC-
Confidence 345578888886 1 22332 3344445567 66666554 322 35789999999999999999 999
Q ss_pred eeecCeEEEEEecCCC
Q psy13181 89 ITVDGLQVRLDIADGK 104 (137)
Q Consensus 89 ~~l~g~~l~v~~a~~~ 104 (137)
..++|++|...+...+
T Consensus 337 R~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 337 RWFDGRQLTASIWDGK 352 (382)
T ss_pred eeecceEEEEEEeCCc
Confidence 9999999999887654
No 121
>KOG3152|consensus
Probab=95.68 E-value=0.0072 Score=43.49 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=55.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCC--------CCee----cEEEEEEcCHHHHHHHHH-hCCCe
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKET--------DRFK----GFCYVEFVDVENLRQALL-KDGRI 89 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t--------~~~~----g~~fv~f~~~~~a~~al~-l~~~~ 89 (137)
..-.||+++||+.+.-.-|+.+|.+| .|-.|.+-....+ +.+. ..+.|+|.+...|..+.. ||+ .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn-~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN-T 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC-C
Confidence 44679999999999999999999999 8888877554333 2222 235689999999999888 999 8
Q ss_pred eecCeE
Q psy13181 90 TVDGLQ 95 (137)
Q Consensus 90 ~l~g~~ 95 (137)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 888754
No 122
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.59 E-value=0.21 Score=31.70 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCceEEEcCCCCCCCH-HHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC
Q psy13181 24 PPYTAFVGNLPNGITQ-GDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 93 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e-~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g 93 (137)
....+.|-..|+.++. ++|..+...+ .|..+.++++.. .++=.+++.|.+.+.|..... +|| ..++.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNG-k~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNG-KPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCC-CccCC
Confidence 3345555555555555 5666666666 788889988743 345578999999999999999 999 77654
No 123
>KOG2314|consensus
Probab=95.57 E-value=0.062 Score=42.92 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=58.5
Q ss_pred CceEEEcCCCCCCCH------HHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec-CeE
Q psy13181 25 PYTAFVGNLPNGITQ------GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQ 95 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e------~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-g~~ 95 (137)
...|+|.|+|.--.. ..|.++|+++ .+..+.++.+..++ .+|+.|++|.+..+|+.|+. ||| ..|+ .+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G-~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNG-KRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhccc-ceecccce
Confidence 467889998854322 3556778888 88888888887755 89999999999999999999 999 6654 566
Q ss_pred EEEEec
Q psy13181 96 VRLDIA 101 (137)
Q Consensus 96 l~v~~a 101 (137)
..|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 766653
No 124
>KOG1855|consensus
Probab=95.16 E-value=0.031 Score=43.03 Aligned_cols=64 Identities=27% Similarity=0.334 Sum_probs=51.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeec---CCC--C-C-------eecEEEEEEcCHHHHHHHHH-h
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKD---KET--D-R-------FKGFCYVEFVDVENLRQALL-K 85 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~---~~t--~-~-------~~g~~fv~f~~~~~a~~al~-l 85 (137)
+-+.++|.+-|||.+-.-+-|.++|..+ .|..|.++.. +.. + . .+-||+|+|...+.|.+|.+ +
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3467899999999998889999999999 8998888764 211 1 1 25689999999999999988 5
No 125
>KOG0112|consensus
Probab=95.14 E-value=0.025 Score=47.16 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~v 98 (137)
...+.++|++|..++....|..+|..| .|..|.+-. ...|++|.|.+...++.|+. |-+ ..|++ +++.|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rg-ap~G~P~~r~rv 525 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRG-APLGGPPRRLRV 525 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhc-CcCCCCCccccc
Confidence 455789999999999999999999999 777765532 23499999999999999999 999 88876 77999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++.+..
T Consensus 526 dla~~~~ 532 (975)
T KOG0112|consen 526 DLASPPG 532 (975)
T ss_pred ccccCCC
Confidence 9987643
No 126
>KOG0128|consensus
Probab=95.06 E-value=0.0032 Score=51.85 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=53.6
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD 92 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~ 92 (137)
.++||.||+..+.+.+|...|..+ .+..+.+.....++..+|.|+++|...+.+.+++. ... ..+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhh
Confidence 579999999999999999999888 66655555455678889999999999999999988 443 4433
No 127
>KOG1996|consensus
Probab=94.61 E-value=0.12 Score=38.25 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHhcCcCC-ceeEEEEeecCCCCCee-cEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 40 GDVERFFPEQ-KLVSVRLVKDKETDRFK-GFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 40 ~~l~~~f~~~-~i~~i~~~~~~~t~~~~-g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
+++....++| ++..|.+...+...... --.||+|...+++.+|+. |+| ..++|+.+...+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG-RyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG-RYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC-ceecceeeeheecc
Confidence 4566667788 88888776665443333 347999999999999998 999 99999988877654
No 128
>KOG0804|consensus
Probab=94.44 E-value=0.18 Score=39.31 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=56.8
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 93 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g 93 (137)
...|+|-.+|..++-.||..|...+ .|..+.+++|.. -++=.++|.|.+..+|..... +|| ..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG-k~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG-KQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC-CcCCC
Confidence 6789999999999999999999888 899999999643 233357999999999999999 999 87765
No 129
>KOG4676|consensus
Probab=93.75 E-value=0.1 Score=39.91 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=56.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCC---CCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKE---TDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~---t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
..|.|.||.+.++.++++.+|.-. .|.++.|..... -....-.|||-|.+.+.+..|.-|.. ..+-+..|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeeeeEEEEec
Confidence 378999999999999999999776 787776644221 12334589999999999998888666 6666666655554
Q ss_pred C
Q psy13181 102 D 102 (137)
Q Consensus 102 ~ 102 (137)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 130
>KOG0115|consensus
Probab=93.57 E-value=0.061 Score=38.85 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=48.7
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~ 84 (137)
..|+|.||...++.+.+...|+.| .|....++-|- .++..+-++|.|.+...+.+|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHH
Confidence 789999999999999999999999 66655454443 36778889999999999999888
No 131
>KOG2202|consensus
Probab=92.84 E-value=0.037 Score=39.88 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=44.0
Q ss_pred HHHhcCc-CC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 41 DVERFFP-EQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 41 ~l~~~f~-~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
++...|. +| .|+++.+..+.. .--.|-++|.|..+++|++|+. |++ .-+.|++|.+.+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnn-Rw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNN-RWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcC-ccccCCcceeeecC
Confidence 3444444 56 676665544321 2235678999999999999999 999 99999999998865
No 132
>KOG0112|consensus
Probab=92.32 E-value=0.025 Score=47.15 Aligned_cols=77 Identities=18% Similarity=0.343 Sum_probs=59.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+||++||+..+++.+|+..|..+ .+.+|.+-..+. +.-.-++|+.|.+.+.+..++. +.+ ..|..-.+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~-~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESG-PLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcC-CccccCccccccc
Confidence 45899999999999999999999999 888887755432 2223489999999988888887 888 6666555666655
Q ss_pred C
Q psy13181 102 D 102 (137)
Q Consensus 102 ~ 102 (137)
.
T Consensus 449 ~ 449 (975)
T KOG0112|consen 449 Q 449 (975)
T ss_pred c
Confidence 3
No 133
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.22 E-value=1 Score=37.04 Aligned_cols=66 Identities=6% Similarity=0.081 Sum_probs=44.2
Q ss_pred eEEEc-CCCCCCCHHHHHhcCcCC------ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 27 TAFVG-NLPNGITQGDVERFFPEQ------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 27 ~l~v~-nlp~~~~e~~l~~~f~~~------~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.+||. +--..++..+|..++..- .|-.|.+.. .|.||+... ..+...+. |.. ..+.+++|.|
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~-~~~~~~~~~~ 557 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTR-TRILNKPMNM 557 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhcc-ccccCCceEE
Confidence 35542 334567777777776543 344555532 278888775 44667777 888 8999999999
Q ss_pred EecC
Q psy13181 99 DIAD 102 (137)
Q Consensus 99 ~~a~ 102 (137)
+.+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9875
No 134
>KOG2591|consensus
Probab=91.99 E-value=0.29 Score=39.19 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcC--C-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCC-CeeecCeEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPE--Q-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDG-RITVDGLQVR 97 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~--~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~-~~~l~g~~l~ 97 (137)
...+.|.|.-||..+.+++++.+|.. + .+..|.+-.+- -=||+|++..+|+.|.+ |.- ...|.|++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 34466777999999999999999975 4 77777665432 35899999999999987 542 1567787776
Q ss_pred EEec
Q psy13181 98 LDIA 101 (137)
Q Consensus 98 v~~a 101 (137)
.++.
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 6653
No 135
>KOG2068|consensus
Probab=91.69 E-value=0.082 Score=39.50 Aligned_cols=78 Identities=19% Similarity=0.322 Sum_probs=57.1
Q ss_pred ceEEEcCCCCCCCHHHH---HhcCcCC-ceeEEEEeecCC--CC-CeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 26 YTAFVGNLPNGITQGDV---ERFFPEQ-KLVSVRLVKDKE--TD-RFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l---~~~f~~~-~i~~i~~~~~~~--t~-~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
.-+||-+|+.....+.+ ..+|.+| .|..|.+..+.. .. -..-.++|+|...+++..||. .++ ..++++.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g-~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDG-FVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhh-HHhhhhhhH
Confidence 45778888877655544 3457788 888888776552 11 112247999999999999999 999 999998888
Q ss_pred EEecCCC
Q psy13181 98 LDIADGK 104 (137)
Q Consensus 98 v~~a~~~ 104 (137)
+.+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877665
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.80 E-value=1.2 Score=25.84 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=31.6
Q ss_pred CCCCHHHHHhcCcCC------ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 35 NGITQGDVERFFPEQ------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 35 ~~~~e~~l~~~f~~~------~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++..+|..++... .|-.|.+..+ |+||+.... .+..++. |++ ..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~-~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNG-KKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT---SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcC-CCCCCeeEEEEEC
Confidence 456777787777543 4556666422 888888754 6777788 999 9999999999875
No 137
>KOG4660|consensus
Probab=90.75 E-value=0.49 Score=37.75 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=37.7
Q ss_pred EEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec----CeEEEEEecCC
Q psy13181 53 SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD----GLQVRLDIADG 103 (137)
Q Consensus 53 ~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~----g~~l~v~~a~~ 103 (137)
.+.++.|-.+..+-|||||.|.+.+.+..+.+ .|| ..+. .+.+.+.||.-
T Consensus 418 FlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnG-k~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 418 FLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNG-KKWEKFNSEKIASITYARI 472 (549)
T ss_pred eEEeccccccccccceeEEeecCHHHHHHHHHHHcC-Cchhhhcceeeeeeehhhh
Confidence 34566666677888999999999999999998 998 6553 25566666653
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.69 E-value=2 Score=24.59 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=40.5
Q ss_pred CCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 35 NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 35 ~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
..++-+|++..|..|...+| ..++ | --||.|.+..+|++|.. .++ ..+-...+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~I--~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~-~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDRI--RDDR-T-----GFYIVFNDSKEAERCFRAEDG-TLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcceE--EecC-C-----EEEEEECChHHHHHHHHhcCC-CEEEEEEEEe
Confidence 35677899999998844444 2333 2 45899999999999999 888 7777666554
No 139
>KOG4410|consensus
Probab=88.97 E-value=1.7 Score=32.22 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCH
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDV 76 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~ 76 (137)
...-|+++||+.++.-.||+..+.+. ....|.|- -+.+-||+.|-+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 44679999999999999999998776 55555552 2456799999654
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.54 E-value=1.6 Score=30.19 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=41.5
Q ss_pred HHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hC--CCeeecCeEEEEEecCCC
Q psy13181 39 QGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQVRLDIADGK 104 (137)
Q Consensus 39 e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~--~~~~l~g~~l~v~~a~~~ 104 (137)
...|+++|..+ .+..+..+.. -+-..|.|.+.+.|..+.. |+ + ..+.+..++|-++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~-~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDG-TSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--T-SEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccc-cccCCCceEEEEcccc
Confidence 46788888888 6666655532 2358899999999999999 99 8 9999999999988543
No 141
>KOG4210|consensus
Probab=88.08 E-value=0.75 Score=34.06 Aligned_cols=82 Identities=24% Similarity=0.284 Sum_probs=59.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
...++|++++...+.+.++..++... ......+.........++++.+.|...+.+..+|.+.+...+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999888777777666 44444444445567788999999999999999999655246666666666555
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
.+.
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 433
No 142
>KOG2253|consensus
Probab=87.56 E-value=0.44 Score=38.82 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=53.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
.+.++..++||+|+...+..+-+...+..+ .+..+.. -.|+|+.|........++. ++. ..+++..+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr---------~~fgf~~f~~~~~~~ra~r~~t~-~~~~~~kl~ 104 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR---------DKFGFCEFLKHIGDLRASRLLTE-LNIDDQKLI 104 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh---------hhhcccchhhHHHHHHHHHHhcc-cCCCcchhh
Confidence 334567899999999999999888887766 4433211 1289999999998888888 887 888887766
Q ss_pred EEe
Q psy13181 98 LDI 100 (137)
Q Consensus 98 v~~ 100 (137)
+..
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 655
No 143
>KOG4285|consensus
Probab=86.86 E-value=2.7 Score=31.40 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=48.7
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCe-EEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL-QVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~-~l~v~~a~~ 103 (137)
.=|.|-++|+.-.. -|...|.+| .|.+.... ..-.+-+|.|.+..++++||..++ ..|++. .|-|..+..
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng-~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNG-TIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcC-eeeccceEEeeeecCC
Confidence 33555567665443 356678888 77665443 223489999999999999999999 888774 355555444
Q ss_pred C
Q psy13181 104 K 104 (137)
Q Consensus 104 ~ 104 (137)
+
T Consensus 270 k 270 (350)
T KOG4285|consen 270 K 270 (350)
T ss_pred H
Confidence 3
No 144
>KOG2135|consensus
Probab=86.53 E-value=0.4 Score=37.62 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=56.4
Q ss_pred CceEEEcCCCCCCC-HHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGIT-QGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~-e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
.+.+-+.-.|+... .++|...|-+| .|..|.+-.. ...|.|+|.+..++-.|...++ ..|+++.|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~-avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHG-AVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcccc-ceecCceeEEEEec
Confidence 34455555566544 47888999999 9999887543 3379999999998877777888 99999999999977
Q ss_pred C
Q psy13181 103 G 103 (137)
Q Consensus 103 ~ 103 (137)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 6
No 145
>KOG4483|consensus
Probab=86.42 E-value=1.7 Score=33.68 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=46.7
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHh
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l 85 (137)
-.+.|-|-++|...-.+||...|+.| .--+|.|+-+. ++|.+|.+...|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 35788899999999999999999998 56677777653 899999999999999873
No 146
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=83.61 E-value=7.3 Score=26.04 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=44.7
Q ss_pred CCCceEEEcCCCCCCCH----HHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 23 EPPYTAFVGNLPNGITQ----GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e----~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
++-.+|.|.=|...+.. ..+...++.| .|..|.+. | +..|.|+|.+..+|=.|+. ++. ...|..+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s--~~pgtm~ 154 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS--RAPGTMF 154 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC--CCCCceE
Confidence 34467777755544433 3445556677 78777664 2 3379999999999988888 664 3345555
Q ss_pred EEEe
Q psy13181 97 RLDI 100 (137)
Q Consensus 97 ~v~~ 100 (137)
.+.+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 5555
No 147
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=77.58 E-value=4.2 Score=25.99 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=32.5
Q ss_pred ceEEEcCCCCCC---------CHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEc-CHHHHHHHHHhC
Q psy13181 26 YTAFVGNLPNGI---------TQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV-DVENLRQALLKD 86 (137)
Q Consensus 26 ~~l~v~nlp~~~---------~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~-~~~~a~~al~l~ 86 (137)
.++.|-|++... +.+.|.+.|..|...++..+.++. -++++++|.|. +..-...|+.|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETT--EEEEEEEEE--SSHHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCC--CCcEEEEEEECCChHHHHHHHHHH
Confidence 466777775543 446788888888333455555553 56789999997 466666666644
No 148
>KOG2193|consensus
Probab=73.42 E-value=0.15 Score=39.51 Aligned_cols=76 Identities=12% Similarity=0.223 Sum_probs=59.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEE-eecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRL-VKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~-~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
...+++-|.|+|+....+.|..++.+| .+..|.. ..+.. .-..-+.|.+.+.+..++. +++ ..|....+++.
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g-~Q~en~~~k~~ 152 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNG-PQLENQHLKVG 152 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcc-hHhhhhhhhcc
Confidence 355789999999999999999999999 7777744 33332 2234467888999999999 999 99999889988
Q ss_pred ecCC
Q psy13181 100 IADG 103 (137)
Q Consensus 100 ~a~~ 103 (137)
|-..
T Consensus 153 YiPd 156 (584)
T KOG2193|consen 153 YIPD 156 (584)
T ss_pred cCch
Confidence 7543
No 149
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.00 E-value=3.6 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=20.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCc
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFP 47 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~ 47 (137)
..++|.|.|||...++++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 457899999999999999987654
No 150
>KOG4574|consensus
Probab=69.80 E-value=2.9 Score=35.46 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=56.2
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-eeecCeEEEEEecCC
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQVRLDIADG 103 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~-~~l~g~~l~v~~a~~ 103 (137)
+..+.|.+-..+...|..++..| .+.....+++-. .+.|+|.+.+.+-.|++ ++|. ..+-|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34445556677777888888888 888887766633 89999999999999999 9983 245678899999886
Q ss_pred CC
Q psy13181 104 KR 105 (137)
Q Consensus 104 ~~ 105 (137)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 151
>KOG3973|consensus
Probab=69.13 E-value=6.4 Score=30.11 Aligned_cols=6 Identities=50% Similarity=1.165 Sum_probs=2.4
Q ss_pred CCCCCC
Q psy13181 126 GGNKYN 131 (137)
Q Consensus 126 ~~~~~~ 131 (137)
++++|-
T Consensus 380 GGggyq 385 (465)
T KOG3973|consen 380 GGGGYQ 385 (465)
T ss_pred CCCCCc
Confidence 333443
No 152
>KOG1295|consensus
Probab=65.42 E-value=13 Score=28.65 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=47.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCe--ecEEEEEEcCHHHHHHHHH-hCCCeeec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRF--KGFCYVEFVDVENLRQALL-KDGRITVD 92 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~--~g~~fv~f~~~~~a~~al~-l~~~~~l~ 92 (137)
....+|.|.+||+..++.++..-+.++ .+.+..+.....+-.+ .+.++|.|........... ++|.+.|+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 345688999999999999998888777 4444444321111111 3568999999999888888 88833333
No 153
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=44.36 E-value=12 Score=29.15 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=47.8
Q ss_pred CceEEEcCCCCCCCHH--------HHHhcCcC--C-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH
Q psy13181 25 PYTAFVGNLPNGITQG--------DVERFFPE--Q-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~--------~l~~~f~~--~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~ 84 (137)
.+.+|+.++..+...+ ++..+|.. . .+..+.+.++..+..++|..|++|...+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567777777665555 88888887 4 77788888887777888999999999999999883
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=43.28 E-value=44 Score=19.09 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCC
Q psy13181 41 DVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 41 ~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~ 103 (137)
+|.+.|... .+..+.-+..+.+......-||++........+ ++= ..|.+..|+|+....
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~I-k~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKI-KTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eeh-HhhCCeEEEEecCCC
Confidence 455555443 777887777776667777788887654332222 333 456677788876543
No 155
>COG4907 Predicted membrane protein [Function unknown]
Probab=42.40 E-value=28 Score=27.89 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q psy13181 77 ENLRQALL 84 (137)
Q Consensus 77 ~~a~~al~ 84 (137)
+.+.+|+.
T Consensus 526 dkVvkam~ 533 (595)
T COG4907 526 DKVVKAMR 533 (595)
T ss_pred HHHHHHHH
Confidence 44444544
No 156
>KOG4676|consensus
Probab=37.92 E-value=11 Score=29.38 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=39.8
Q ss_pred CCCceEEEcCCCCCCCH-HHHHhcCcCCceeEEEEeecCCC-CCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEE
Q psy13181 23 EPPYTAFVGNLPNGITQ-GDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 96 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e-~~l~~~f~~~~i~~i~~~~~~~t-~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l 96 (137)
...+++||.++...+.+ ++...++ . .|..+.++..... -..--+||+.|.+...+..+|..+| +.+...++
T Consensus 50 v~sRtcyVkf~d~~sv~vaQhLtnt-v-fvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg-~Lp~~~~l 122 (479)
T KOG4676|consen 50 VISRTCYVKFLDSQSVTVAQHLTNT-V-FVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDG-VLPGDRPL 122 (479)
T ss_pred ceeeeEEEeccCCcceeHHhhhccc-e-eeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCC-ccCCCCcc
Confidence 34589999999877655 3333222 2 2333333222211 1223358888888777777766666 66555554
No 157
>KOG3973|consensus
Probab=36.61 E-value=61 Score=25.04 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.4
Q ss_pred CCCCCC
Q psy13181 126 GGNKYN 131 (137)
Q Consensus 126 ~~~~~~ 131 (137)
++++|.
T Consensus 456 grg~y~ 461 (465)
T KOG3973|consen 456 GRGGYR 461 (465)
T ss_pred CCcccC
Confidence 333443
No 158
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.68 E-value=52 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=23.5
Q ss_pred EEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCCC
Q psy13181 69 CYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGK 104 (137)
Q Consensus 69 ~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~~ 104 (137)
|||+|++..+|+.+++ +.. .. ...+.+..|...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CC--CCCceEeeCCCc
Confidence 6999999999999998 544 32 244566666544
No 159
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=30.98 E-value=62 Score=18.71 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 41 DVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 41 ~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
+|.+.|... .+..+..+..+.+......-+|+.....+.... ++- ..|.+.++.|+...
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I--l~i-k~Lg~~~V~VEr~~ 63 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI--LNI-KTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce--Eee-hhhCCeeEEEecCc
Confidence 455555554 777787777777666666777877654322221 333 45677888887644
No 160
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.13 E-value=1.4e+02 Score=22.45 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=52.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCC-------CCCeecEEEEEEcCHHHHHHHHH-----hCCC-
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKE-------TDRFKGFCYVEFVDVENLRQALL-----KDGR- 88 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~-------t~~~~g~~fv~f~~~~~a~~al~-----l~~~- 88 (137)
=.++.|...|+..+++-..+...|..| .|+.|.++.+.. ..+......+.|=+.+.+..... |...
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 356788889999888888888888888 999999987651 12334567788877766554332 1110
Q ss_pred eeecCeEEEEEecC
Q psy13181 89 ITVDGLQVRLDIAD 102 (137)
Q Consensus 89 ~~l~g~~l~v~~a~ 102 (137)
..|....|.+.+..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 24555556655543
No 161
>PRK11901 hypothetical protein; Reviewed
Probab=28.97 E-value=1.1e+02 Score=23.38 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=34.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCee-cEEEEEEcCHHHHHHHHH-hCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFK-GFCYVEFVDVENLRQALL-KDG 87 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~-g~~fv~f~~~~~a~~al~-l~~ 87 (137)
++|-|.. ...++.|..|..+..+..+.+.....+|+.- ...+-.|.+.++|..|+. |..
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQNLSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcCcCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 5555544 4557778888766533333333332233332 122347889999999998 764
No 162
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=26.53 E-value=1.3e+02 Score=20.66 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeec
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKD 59 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~ 59 (137)
......+++.+++..++..++...|..+ .+....+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 3456789999999999999999999988 7755555443
No 163
>PHA01632 hypothetical protein
Probab=25.13 E-value=53 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.517 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCHHHHHhcCcC
Q psy13181 28 AFVGNLPNGITQGDVERFFPE 48 (137)
Q Consensus 28 l~v~nlp~~~~e~~l~~~f~~ 48 (137)
|.|...|...+|++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445689999999999988765
No 164
>PF14893 PNMA: PNMA
Probab=24.95 E-value=38 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=21.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPE 48 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~ 48 (137)
.-+.+.|.+||.+|++++|.+.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4468999999999999999888754
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.83 E-value=77 Score=23.28 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=23.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEE
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRL 56 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~ 56 (137)
....|+|||..++..-+..++... .+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 467789999999999999888765 4433333
No 166
>KOG4008|consensus
Probab=22.56 E-value=45 Score=24.21 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ 49 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~ 49 (137)
...++|+-|+|..++++.|..++++.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsql 64 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQL 64 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHh
Confidence 45689999999999999999988765
No 167
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.19 E-value=1.8e+02 Score=17.07 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=34.5
Q ss_pred EEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHH
Q psy13181 28 AFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82 (137)
Q Consensus 28 l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~a 82 (137)
-|+-..+...+..+|+..++.. .+..|..+.-+. ..--|+|.+...+.|...
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 3444468899999999998874 666665444332 223699999776666554
No 168
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=21.95 E-value=31 Score=19.79 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=18.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCc
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFP 47 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~ 47 (137)
...+++|||.+|..|-++.-..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3568999999999887765444443
No 169
>KOG2295|consensus
Probab=21.20 E-value=9.8 Score=30.87 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD 92 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~ 92 (137)
...++|+.|+++.++-.+|..++..+ .+..+.+...-..........|.|+-.-...-|+. |++ ..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~-irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG-IRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh-cccc
Confidence 34678999999999999999999887 65555443222112233345566764434444444 666 4443
No 170
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.28 E-value=2.1e+02 Score=17.11 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=34.2
Q ss_pred CCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH
Q psy13181 32 NLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84 (137)
Q Consensus 32 nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~ 84 (137)
-.+...+..+|++.++.. .+..|..+..+. ..--|+|.+...+.|.....
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 457889999999998874 666665544332 22369999987777665543
Done!