Query psy13181
Match_columns 137
No_of_seqs 105 out of 1457
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 22:13:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.1E-21 1.4E-25 128.0 11.9 89 22-111 36-126 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 7.1E-21 2.4E-25 118.2 10.5 79 24-103 18-98 (99)
3 2dng_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 112.5 13.8 91 17-108 7-97 (103)
4 2dgo_A Cytotoxic granule-assoc 99.8 2.3E-19 7.8E-24 113.8 14.8 90 19-109 9-100 (115)
5 1u6f_A Tcubp1, RNA-binding pro 99.8 7E-20 2.4E-24 119.8 12.8 86 22-108 39-126 (139)
6 2dnz_A Probable RNA-binding pr 99.8 6.1E-20 2.1E-24 112.6 11.6 86 23-109 3-90 (95)
7 2cqd_A RNA-binding region cont 99.8 2.6E-19 8.8E-24 113.7 14.6 91 19-111 11-103 (116)
8 3ex7_B RNA-binding protein 8A; 99.8 1.7E-20 5.8E-25 120.8 9.0 90 19-109 16-107 (126)
9 2cq0_A Eukaryotic translation 99.8 2.8E-19 9.5E-24 111.3 14.0 85 22-107 12-98 (103)
10 1wi8_A EIF-4B, eukaryotic tran 99.8 1.7E-19 5.8E-24 112.5 13.0 91 17-108 7-98 (104)
11 2dgs_A DAZ-associated protein 99.8 1.6E-19 5.4E-24 111.7 12.4 87 21-108 6-93 (99)
12 3s8s_A Histone-lysine N-methyl 99.8 1.1E-19 3.6E-24 114.9 11.6 82 23-105 4-87 (110)
13 1x5u_A Splicing factor 3B subu 99.8 9.8E-20 3.3E-24 113.7 11.2 88 20-108 10-99 (105)
14 2cpz_A CUG triplet repeat RNA- 99.8 2.3E-19 8E-24 113.8 12.8 90 19-109 19-110 (115)
15 1whw_A Hypothetical protein ri 99.8 2.4E-19 8.3E-24 110.8 12.1 86 22-108 5-92 (99)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.6E-19 5.5E-24 112.1 11.2 87 22-109 9-97 (102)
17 2fy1_A RNA-binding motif prote 99.8 1.7E-19 6E-24 114.8 11.5 87 22-110 4-92 (116)
18 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-19 3.9E-24 109.6 10.2 83 22-105 3-87 (87)
19 2do4_A Squamous cell carcinoma 99.8 5.3E-19 1.8E-23 109.5 13.2 85 20-106 12-98 (100)
20 2d9p_A Polyadenylate-binding p 99.8 5.9E-19 2E-23 109.8 13.4 88 18-108 8-97 (103)
21 2dnm_A SRP46 splicing factor; 99.8 1.4E-19 4.6E-24 112.7 10.4 86 21-107 9-96 (103)
22 3md1_A Nuclear and cytoplasmic 99.8 2.9E-19 9.9E-24 106.9 11.3 80 25-105 1-82 (83)
23 1x4h_A RNA-binding protein 28; 99.8 3.9E-19 1.3E-23 111.9 12.3 87 20-107 10-104 (111)
24 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-19 3.8E-24 112.9 9.5 88 21-109 8-97 (102)
25 2fc8_A NCL protein; structure 99.8 8.4E-19 2.9E-23 108.9 13.3 84 21-107 11-95 (102)
26 2cpe_A RNA-binding protein EWS 99.8 4.6E-19 1.6E-23 112.1 12.1 86 21-107 11-106 (113)
27 2cqc_A Arginine/serine-rich sp 99.8 5.4E-19 1.9E-23 108.3 11.6 83 20-103 10-94 (95)
28 1x5t_A Splicing factor 3B subu 99.8 3.2E-19 1.1E-23 109.6 10.3 84 23-107 3-89 (96)
29 2dhg_A TRNA selenocysteine ass 99.8 3E-19 1E-23 111.3 10.1 86 21-108 5-94 (104)
30 2do0_A HnRNP M, heterogeneous 99.8 3.8E-18 1.3E-22 107.9 15.3 83 22-106 12-96 (114)
31 2cph_A RNA binding motif prote 99.8 6.7E-19 2.3E-23 110.1 11.6 88 19-107 9-100 (107)
32 2e5h_A Zinc finger CCHC-type a 99.8 8.2E-19 2.8E-23 107.3 11.7 81 21-102 12-94 (94)
33 2lxi_A RNA-binding protein 10; 99.8 4.7E-20 1.6E-24 112.7 5.8 82 26-107 2-86 (91)
34 2kxn_B Transformer-2 protein h 99.8 2.4E-19 8.1E-24 116.2 9.4 87 19-106 40-128 (129)
35 2dgp_A Bruno-like 4, RNA bindi 99.8 2.7E-19 9.2E-24 111.8 9.3 88 20-108 8-100 (106)
36 3pgw_S U1-70K; protein-RNA com 99.8 7.4E-19 2.5E-23 134.3 13.4 83 23-106 100-184 (437)
37 1wez_A HnRNP H', FTP-3, hetero 99.8 8.4E-19 2.9E-23 109.3 11.2 83 21-105 11-93 (102)
38 2cpf_A RNA binding motif prote 99.8 7E-19 2.4E-23 108.5 10.8 85 23-108 3-92 (98)
39 2dh8_A DAZ-associated protein 99.8 5.4E-19 1.9E-23 110.3 10.3 87 21-108 12-99 (105)
40 2la6_A RNA-binding protein FUS 99.8 8.8E-19 3E-23 108.3 11.1 84 18-102 6-99 (99)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.3E-19 1.8E-23 106.2 9.7 80 22-102 4-85 (85)
42 1x4c_A Splicing factor, argini 99.8 2.6E-18 8.8E-23 107.9 13.2 82 19-108 9-97 (108)
43 2jrs_A RNA-binding protein 39; 99.8 9.9E-19 3.4E-23 110.0 11.3 86 19-105 20-107 (108)
44 2lkz_A RNA-binding protein 5; 99.8 2.6E-19 9E-24 110.3 8.4 81 23-103 7-94 (95)
45 1oo0_B CG8781-PA, drosophila Y 99.8 4E-19 1.4E-23 111.8 9.4 88 19-107 20-109 (110)
46 1p27_B RNA-binding protein 8A; 99.8 4.7E-19 1.6E-23 110.8 9.5 83 22-105 20-104 (106)
47 2div_A TRNA selenocysteine ass 99.8 5.1E-19 1.8E-23 109.3 9.6 84 22-106 6-96 (99)
48 3s7r_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 104.9 11.2 80 21-101 7-87 (87)
49 2cqg_A TDP-43, TAR DNA-binding 99.8 4.3E-18 1.5E-22 105.9 13.5 87 20-108 10-97 (103)
50 1x4b_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 112.4 9.4 84 24-108 26-110 (116)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 2.2E-18 7.4E-23 107.5 12.2 85 22-108 12-101 (105)
52 2cq3_A RNA-binding protein 9; 99.8 4.8E-18 1.6E-22 105.7 13.7 87 19-108 9-97 (103)
53 2x1f_A MRNA 3'-END-processing 99.8 8.9E-19 3E-23 107.7 10.2 80 25-105 2-83 (96)
54 2dgw_A Probable RNA-binding pr 99.8 3E-18 1E-22 104.3 12.1 84 21-106 6-89 (91)
55 1x4a_A Splicing factor, argini 99.8 3.8E-18 1.3E-22 107.2 12.9 85 19-107 16-102 (109)
56 2dgu_A Heterogeneous nuclear r 99.8 3.1E-18 1.1E-22 106.6 12.3 80 22-110 8-89 (103)
57 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.4E-18 1.5E-22 105.8 12.6 87 19-108 9-97 (103)
58 2cqp_A RNA-binding protein 12; 99.8 1.4E-18 4.7E-23 107.2 10.2 84 21-105 11-96 (98)
59 2dgv_A HnRNP M, heterogeneous 99.8 1.5E-18 5.3E-23 105.7 10.3 86 21-109 4-91 (92)
60 2khc_A Testis-specific RNP-typ 99.8 1.6E-18 5.5E-23 110.3 10.5 80 22-102 37-118 (118)
61 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.3E-24 113.7 6.6 82 22-105 12-95 (114)
62 2cpi_A CCR4-NOT transcription 99.8 4.6E-18 1.6E-22 107.3 12.4 85 21-106 11-103 (111)
63 3ulh_A THO complex subunit 4; 99.8 2.5E-18 8.5E-23 107.6 11.0 82 19-102 23-106 (107)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.8E-18 6.1E-23 116.3 10.5 85 22-107 69-155 (165)
65 2fc9_A NCL protein; structure 99.8 7.8E-18 2.7E-22 104.3 12.7 83 21-108 11-95 (101)
66 2dgx_A KIAA0430 protein; RRM d 99.8 2.4E-18 8.3E-23 105.9 10.2 83 22-108 6-94 (96)
67 4f25_A Polyadenylate-binding p 99.8 2.4E-18 8.4E-23 109.3 10.1 79 25-106 5-85 (115)
68 2ywk_A Putative RNA-binding pr 99.8 2.9E-18 9.8E-23 105.1 9.5 82 20-103 11-94 (95)
69 2m2b_A RNA-binding protein 10; 99.8 1.2E-18 4.2E-23 113.0 8.2 85 21-107 19-111 (131)
70 3ucg_A Polyadenylate-binding p 99.8 3.3E-18 1.1E-22 103.5 9.7 80 25-105 6-86 (89)
71 4a8x_A RNA-binding protein wit 99.8 2.9E-18 9.8E-23 103.5 9.3 81 24-105 3-86 (88)
72 2ek1_A RNA-binding protein 12; 99.8 1.8E-18 6.2E-23 106.0 8.4 80 23-103 13-94 (95)
73 2rs2_A Musashi-1, RNA-binding 99.8 6.7E-18 2.3E-22 106.3 10.7 84 22-106 22-106 (109)
74 1wel_A RNA-binding protein 12; 99.8 1.2E-18 4.1E-23 112.0 7.3 88 17-105 17-105 (124)
75 1p1t_A Cleavage stimulation fa 99.8 8.1E-19 2.8E-23 109.2 6.3 83 23-106 6-90 (104)
76 2dis_A Unnamed protein product 99.8 5.5E-18 1.9E-22 106.3 9.8 84 23-107 6-95 (109)
77 1x4e_A RNA binding motif, sing 99.8 1.4E-18 4.7E-23 104.5 6.7 78 23-101 3-82 (85)
78 1wg5_A Heterogeneous nuclear r 99.8 1.5E-17 5.2E-22 103.8 11.6 84 21-106 11-96 (104)
79 3ns6_A Eukaryotic translation 99.8 5.2E-19 1.8E-23 109.8 4.7 81 24-105 5-94 (100)
80 3q2s_C Cleavage and polyadenyl 99.8 1.2E-18 4E-23 123.1 6.9 79 24-103 67-149 (229)
81 2cq4_A RNA binding motif prote 99.8 1.7E-18 5.9E-23 109.6 7.1 81 24-105 24-105 (114)
82 3p5t_L Cleavage and polyadenyl 99.8 8.8E-19 3E-23 106.6 5.5 80 26-106 2-85 (90)
83 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-17 3.7E-22 111.4 10.9 84 22-106 67-152 (158)
84 1x5o_A RNA binding motif, sing 99.8 2.7E-17 9.4E-22 104.0 12.2 81 22-104 22-112 (114)
85 2kt5_A RNA and export factor-b 99.8 1.4E-17 4.9E-22 106.8 11.1 84 21-106 31-116 (124)
86 2dnq_A RNA-binding protein 4B; 99.7 1.8E-17 6.2E-22 100.7 10.6 78 22-108 5-84 (90)
87 2dnn_A RNA-binding protein 12; 99.7 9.2E-18 3.2E-22 105.8 9.5 79 24-104 15-93 (109)
88 2hgn_A Heterogeneous nuclear r 99.7 5.4E-19 1.9E-23 115.9 3.9 85 21-107 42-126 (139)
89 2jwn_A Embryonic polyadenylate 99.7 1.3E-17 4.5E-22 106.9 10.3 81 25-106 36-117 (124)
90 2ad9_A Polypyrimidine tract-bi 99.7 1.8E-17 6.1E-22 105.9 10.8 91 12-108 18-111 (119)
91 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3.3E-18 1.1E-22 106.0 7.2 85 20-105 14-99 (100)
92 2lea_A Serine/arginine-rich sp 99.7 2.3E-18 7.8E-23 112.4 6.7 87 20-107 42-130 (135)
93 2lcw_A RNA-binding protein FUS 99.6 9.7E-20 3.3E-24 115.8 0.0 85 22-107 4-98 (116)
94 2dgt_A RNA-binding protein 30; 99.7 4.6E-17 1.6E-21 99.2 12.0 80 21-109 6-87 (92)
95 2db1_A Heterogeneous nuclear r 99.7 1.4E-17 4.8E-22 106.3 10.0 82 22-105 14-99 (118)
96 2hgl_A HNRPF protein, heteroge 99.7 6.4E-18 2.2E-22 110.4 8.6 82 22-105 41-126 (136)
97 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.4E-17 4.6E-22 108.7 10.0 81 20-101 58-140 (140)
98 2cpx_A Hypothetical protein FL 99.7 4.6E-18 1.6E-22 107.7 7.2 87 21-108 21-109 (115)
99 1s79_A Lupus LA protein; RRM, 99.7 6.3E-18 2.2E-22 105.5 7.7 79 23-103 9-88 (103)
100 2mss_A Protein (musashi1); RNA 99.7 2.7E-18 9.1E-23 100.9 5.6 74 27-101 1-75 (75)
101 2cq1_A PTB-like protein L; RRM 99.7 1.1E-16 3.7E-21 99.5 13.1 81 21-108 11-95 (101)
102 3n9u_C Cleavage and polyadenyl 99.7 8.6E-18 3E-22 112.2 8.7 80 24-104 54-137 (156)
103 2err_A Ataxin-2-binding protei 99.7 1.3E-17 4.6E-22 104.9 9.1 84 18-104 22-107 (109)
104 1fjc_A Nucleolin RBD2, protein 99.7 1.7E-17 5.9E-22 101.8 9.4 82 21-108 12-95 (96)
105 3beg_B Splicing factor, argini 99.7 6.2E-18 2.1E-22 107.4 7.6 80 22-109 13-99 (115)
106 1wf1_A RNA-binding protein RAL 99.7 5E-17 1.7E-21 102.2 11.4 95 5-108 4-104 (110)
107 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-18 4.9E-23 107.7 3.8 84 23-108 15-99 (101)
108 1wex_A Hypothetical protein (r 99.7 5.8E-17 2E-21 101.3 11.0 84 22-111 12-98 (104)
109 1why_A Hypothetical protein ri 99.7 6.9E-17 2.4E-21 99.4 10.7 77 23-106 15-95 (97)
110 1sjq_A Polypyrimidine tract-bi 99.7 2E-17 6.7E-22 103.4 8.1 81 23-109 14-97 (105)
111 2hgm_A HNRPF protein, heteroge 99.7 7.2E-18 2.4E-22 108.8 6.0 83 20-104 37-121 (126)
112 1x4d_A Matrin 3; structural ge 99.7 9.4E-17 3.2E-21 100.0 10.7 79 23-107 13-95 (102)
113 2ki2_A SS-DNA binding protein 99.7 2.8E-18 9.5E-23 104.2 3.6 79 26-106 2-82 (90)
114 2dnp_A RNA-binding protein 14; 99.7 7.3E-17 2.5E-21 98.0 9.6 77 22-107 6-84 (90)
115 2cpj_A Non-POU domain-containi 99.7 1.5E-16 5.2E-21 98.2 11.2 81 21-108 11-93 (99)
116 2nlw_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 102.4 8.1 81 22-105 12-101 (105)
117 2lmi_A GRSF-1, G-rich sequence 99.7 8.7E-18 3E-22 105.4 5.3 83 21-105 7-93 (107)
118 2e5j_A Methenyltetrahydrofolat 99.7 5.5E-17 1.9E-21 99.9 8.8 81 20-106 14-96 (97)
119 2g4b_A Splicing factor U2AF 65 99.7 7.5E-17 2.6E-21 108.0 9.9 96 6-102 75-172 (172)
120 4f02_A Polyadenylate-binding p 99.7 9.6E-17 3.3E-21 111.7 10.8 84 21-105 11-96 (213)
121 1l3k_A Heterogeneous nuclear r 99.7 1.2E-16 4E-21 109.1 11.0 88 23-111 102-190 (196)
122 2cpd_A Apobec-1 stimulating pr 99.7 4.8E-16 1.7E-20 95.9 12.6 80 19-107 9-92 (99)
123 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.5E-21 100.6 9.8 79 23-108 23-103 (109)
124 3r27_A HnRNP L, heterogeneous 99.7 1E-16 3.4E-21 99.3 9.3 78 22-105 18-98 (100)
125 2e5g_A U6 snRNA-specific termi 99.7 2.7E-16 9.3E-21 96.2 11.1 78 23-106 6-84 (94)
126 2hvz_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 101.3 7.1 77 26-108 1-79 (101)
127 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-16 3.7E-21 100.6 9.4 79 19-106 25-105 (108)
128 1iqt_A AUF1, heterogeneous nuc 99.7 7.5E-18 2.6E-22 98.9 3.4 74 27-101 1-75 (75)
129 3md3_A Nuclear and cytoplasmic 99.7 4.7E-16 1.6E-20 103.3 12.3 82 20-102 82-165 (166)
130 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.6E-17 8.9E-22 97.0 5.5 74 26-101 1-76 (77)
131 1l3k_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 108.4 10.2 87 18-105 6-93 (196)
132 3lqv_A PRE-mRNA branch site pr 99.7 8.9E-17 3E-21 101.7 8.1 81 21-105 4-86 (115)
133 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.3E-21 97.1 9.8 78 19-105 16-96 (97)
134 2kvi_A Nuclear polyadenylated 99.7 7.6E-17 2.6E-21 99.1 7.2 77 22-107 7-86 (96)
135 1nu4_A U1A RNA binding domain; 99.7 5.5E-17 1.9E-21 99.7 6.6 80 22-105 5-90 (97)
136 2ytc_A PRE-mRNA-splicing facto 99.7 3.5E-16 1.2E-20 93.8 9.9 76 20-102 7-85 (85)
137 2f3j_A RNA and export factor b 99.7 9.4E-17 3.2E-21 109.2 8.1 80 23-104 86-167 (177)
138 1fxl_A Paraneoplastic encephal 99.7 4.8E-16 1.6E-20 103.3 11.1 81 25-106 2-84 (167)
139 2la4_A Nuclear and cytoplasmic 99.7 1.3E-16 4.5E-21 98.8 7.7 75 23-104 25-101 (101)
140 2xs2_A Deleted in azoospermia- 99.7 4.1E-17 1.4E-21 101.2 5.4 82 22-106 6-88 (102)
141 2a3j_A U1 small nuclear ribonu 99.7 1.4E-16 4.9E-21 102.8 8.2 80 22-105 26-111 (127)
142 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-16 4E-21 101.0 7.3 80 22-106 25-107 (111)
143 2dha_A FLJ20171 protein; RRM d 99.7 4.9E-17 1.7E-21 104.5 5.6 81 23-105 21-106 (123)
144 1b7f_A Protein (SXL-lethal pro 99.7 3.9E-16 1.3E-20 104.0 10.0 82 24-106 2-85 (168)
145 2qfj_A FBP-interacting repress 99.7 6.3E-16 2.2E-20 107.0 11.2 83 24-107 124-208 (216)
146 2i2y_A Fusion protein consists 99.7 2.4E-16 8.2E-21 104.2 8.5 80 20-105 68-149 (150)
147 2wbr_A GW182, gawky, LD47780P; 99.7 3E-16 1E-20 94.5 7.9 73 23-102 5-79 (89)
148 2cqh_A IGF-II mRNA-binding pro 99.7 3.5E-16 1.2E-20 95.4 8.3 79 22-107 5-86 (93)
149 2e44_A Insulin-like growth fac 99.7 2.3E-16 7.8E-21 96.7 7.3 79 22-105 12-93 (96)
150 1x4f_A Matrin 3; structural ge 99.7 9.9E-16 3.4E-20 96.8 10.2 80 22-107 22-105 (112)
151 1b7f_A Protein (SXL-lethal pro 99.7 5.9E-16 2E-20 103.2 9.3 81 20-101 84-168 (168)
152 2krb_A Eukaryotic translation 99.7 1.1E-16 3.7E-21 95.4 5.1 70 26-98 2-80 (81)
153 2cjk_A Nuclear polyadenylated 99.7 3.4E-17 1.1E-21 109.2 3.1 82 23-105 85-167 (167)
154 2yh0_A Splicing factor U2AF 65 99.7 1.1E-15 3.9E-20 104.4 10.8 83 23-106 112-196 (198)
155 1wg1_A KIAA1579 protein, homol 99.7 1.9E-15 6.6E-20 91.3 10.5 75 24-105 4-79 (88)
156 1x5p_A Negative elongation fac 99.7 4.9E-15 1.7E-19 91.0 12.5 77 22-107 12-90 (97)
157 3egn_A RNA-binding protein 40; 99.6 1.4E-16 4.8E-21 104.5 4.7 83 22-105 42-131 (143)
158 1wf0_A TDP-43, TAR DNA-binding 99.6 1.5E-15 5E-20 91.8 7.8 78 24-108 4-82 (88)
159 1fxl_A Paraneoplastic encephal 99.6 1.2E-15 4.3E-20 101.3 7.8 80 21-101 84-167 (167)
160 3d2w_A TAR DNA-binding protein 99.6 2.5E-15 8.7E-20 91.2 8.0 78 21-106 7-86 (89)
161 4f02_A Polyadenylate-binding p 99.6 2.9E-15 9.8E-20 104.2 9.4 79 24-105 102-182 (213)
162 1fje_B Nucleolin RBD12, protei 99.6 7.9E-15 2.7E-19 98.5 10.6 78 22-105 96-175 (175)
163 2qfj_A FBP-interacting repress 99.6 2.9E-15 9.9E-20 103.6 8.4 80 24-104 27-108 (216)
164 1whx_A Hypothetical protein ri 99.6 2.1E-15 7.2E-20 95.1 7.0 74 24-104 9-84 (111)
165 2e5i_A Heterogeneous nuclear r 99.6 2.2E-14 7.4E-19 92.2 11.2 75 25-106 25-104 (124)
166 1sjr_A Polypyrimidine tract-bi 99.6 4.7E-15 1.6E-19 99.3 8.3 80 22-106 43-126 (164)
167 3md3_A Nuclear and cytoplasmic 99.6 5.4E-15 1.9E-19 98.1 8.6 79 26-106 1-81 (166)
168 2dnl_A Cytoplasmic polyadenyla 99.6 6.1E-15 2.1E-19 93.3 8.1 75 23-101 6-85 (114)
169 3zzy_A Polypyrimidine tract-bi 99.6 1.9E-14 6.4E-19 93.0 10.3 78 23-106 26-108 (130)
170 2j8a_A Histone-lysine N-methyl 99.6 5.9E-15 2E-19 94.7 7.7 76 26-102 3-94 (136)
171 3tyt_A Heterogeneous nuclear r 99.6 2E-14 6.7E-19 99.7 9.9 76 24-105 3-81 (205)
172 2cq2_A Hypothetical protein LO 99.6 5.8E-15 2E-19 93.4 6.5 77 22-105 22-107 (114)
173 3nmr_A Cugbp ELAV-like family 99.6 1.5E-14 5.1E-19 96.8 8.9 81 24-105 2-89 (175)
174 2bz2_A Negative elongation fac 99.6 1.7E-14 5.8E-19 92.3 8.4 76 22-106 36-113 (121)
175 3pgw_A U1-A; protein-RNA compl 99.6 2.9E-14 9.8E-19 102.6 10.6 80 22-105 6-91 (282)
176 2voo_A Lupus LA protein; RNA-b 99.6 3.9E-14 1.3E-18 97.4 10.6 77 25-103 109-186 (193)
177 2cjk_A Nuclear polyadenylated 99.6 1.1E-14 3.7E-19 97.0 7.5 79 24-104 2-81 (167)
178 2hzc_A Splicing factor U2AF 65 99.5 1.2E-14 4E-19 87.4 6.7 71 23-100 4-86 (87)
179 2diu_A KIAA0430 protein; struc 99.5 2.6E-14 8.8E-19 87.0 7.8 72 25-107 8-87 (96)
180 3nmr_A Cugbp ELAV-like family 99.5 2.6E-14 8.8E-19 95.6 8.7 78 23-102 93-175 (175)
181 3smz_A Protein raver-1, ribonu 99.5 8.2E-14 2.8E-18 100.3 11.7 83 22-106 181-266 (284)
182 2ghp_A U4/U6 snRNA-associated 99.5 2.9E-14 1E-18 103.0 8.8 83 22-105 207-292 (292)
183 3smz_A Protein raver-1, ribonu 99.5 7.4E-14 2.5E-18 100.6 10.5 81 24-105 94-176 (284)
184 1fje_B Nucleolin RBD12, protei 99.5 6.1E-15 2.1E-19 99.0 3.7 83 21-105 9-92 (175)
185 2adc_A Polypyrimidine tract-bi 99.5 3E-14 1E-18 100.0 6.9 77 22-104 31-110 (229)
186 2pe8_A Splicing factor 45; RRM 99.5 2.8E-13 9.5E-18 84.6 10.0 80 23-103 6-93 (105)
187 3pgw_A U1-A; protein-RNA compl 99.5 3.6E-13 1.2E-17 96.9 11.1 74 23-102 205-281 (282)
188 2dit_A HIV TAT specific factor 99.5 1.1E-12 3.7E-17 82.6 11.3 81 22-107 12-105 (112)
189 3u1l_A PRE-mRNA-splicing facto 99.5 1E-13 3.5E-18 98.1 7.2 78 22-106 131-231 (240)
190 1qm9_A Polypyrimidine tract-bi 99.4 1E-13 3.5E-18 94.9 5.7 75 25-105 3-80 (198)
191 3sde_A Paraspeckle component 1 99.4 7.5E-13 2.6E-17 94.6 10.3 79 19-104 16-96 (261)
192 2ghp_A U4/U6 snRNA-associated 99.4 6.9E-13 2.4E-17 95.8 8.6 79 22-103 38-117 (292)
193 2yh0_A Splicing factor U2AF 65 99.4 6.5E-14 2.2E-18 95.6 2.7 75 24-105 3-89 (198)
194 3sde_A Paraspeckle component 1 99.4 1.4E-12 4.7E-17 93.2 9.5 81 24-105 95-180 (261)
195 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 93.2 5.7 76 23-101 121-204 (205)
196 1qm9_A Polypyrimidine tract-bi 99.4 1.5E-12 5.3E-17 89.0 8.2 76 23-104 118-197 (198)
197 2adc_A Polypyrimidine tract-bi 99.4 3.8E-12 1.3E-16 89.3 10.1 76 23-104 149-228 (229)
198 2g4b_A Splicing factor U2AF 65 99.3 3.5E-12 1.2E-16 85.0 8.1 75 24-105 3-89 (172)
199 3v4m_A Splicing factor U2AF 65 99.3 4.1E-12 1.4E-16 79.2 7.6 79 24-103 4-96 (105)
200 3ue2_A Poly(U)-binding-splicin 99.3 6.9E-12 2.4E-16 79.8 8.7 79 24-103 19-108 (118)
201 1jmt_A Splicing factor U2AF 35 99.3 1E-12 3.6E-17 81.8 2.7 70 30-101 20-103 (104)
202 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.1E-10 1.1E-14 70.1 11.3 75 25-107 10-93 (100)
203 3tht_A Alkylated DNA repair pr 99.2 4.4E-11 1.5E-15 88.7 7.9 77 19-102 12-97 (345)
204 3s6e_A RNA-binding protein 39; 99.1 6.6E-10 2.3E-14 70.1 8.6 77 22-103 4-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 1.3E-09 4.3E-14 69.4 8.8 79 19-104 12-96 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 2.6E-09 8.9E-14 64.3 7.6 72 24-104 6-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 3.2E-08 1.1E-12 59.9 4.7 71 23-102 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.6 1.6E-07 5.3E-12 65.3 7.4 65 37-102 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 5.1E-06 1.7E-10 51.4 7.9 71 23-100 19-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 97.8 0.00035 1.2E-08 42.7 9.3 73 23-104 6-84 (104)
211 1uw4_A UPF3X; nonsense mediate 97.7 0.00036 1.2E-08 41.9 8.6 67 26-93 2-72 (91)
212 2l08_A Regulator of nonsense t 97.6 0.00033 1.1E-08 42.5 7.4 77 25-102 9-94 (97)
213 1whv_A Poly(A)-specific ribonu 97.6 0.00024 8.1E-09 43.0 6.6 55 23-85 14-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.4 0.00027 9.2E-09 42.9 4.5 55 24-86 5-60 (101)
215 1wey_A Calcipressin 1; structu 97.0 0.0021 7.2E-08 39.3 5.8 74 24-104 4-84 (104)
216 1wwh_A Nucleoporin 35, nucleop 96.6 0.012 4.3E-07 36.8 7.4 72 23-102 22-95 (119)
217 3pq1_A Poly(A) RNA polymerase; 95.5 0.0042 1.4E-07 47.7 1.5 54 25-84 53-107 (464)
218 3p3d_A Nucleoporin 53; structu 94.6 0.036 1.2E-06 35.3 3.7 77 25-103 7-98 (132)
219 2kn4_A Immunoglobulin G-bindin 94.1 0.068 2.3E-06 34.4 4.4 33 53-87 2-35 (158)
220 2i2y_A Fusion protein consists 92.5 0.049 1.7E-06 34.9 1.7 40 63-104 10-51 (150)
221 3d45_A Poly(A)-specific ribonu 90.7 0.94 3.2E-05 35.1 7.3 55 24-86 439-494 (507)
222 4e8u_A Putative uncharacterize 64.7 27 0.00094 23.0 6.6 60 25-86 12-83 (172)
223 2cu1_A Mitogen-activated prote 31.2 65 0.0022 19.3 3.5 65 32-106 23-90 (103)
224 2ytu_A Friend leukemia integra 24.2 37 0.0013 21.2 1.7 26 22-47 26-51 (128)
225 2g0c_A ATP-dependent RNA helic 24.2 90 0.0031 16.8 3.2 58 35-102 11-75 (76)
226 2pk2_A Cyclin-T1, protein TAT; 24.1 16 0.00055 26.8 0.0 9 37-45 229-237 (358)
227 3uzu_A Ribosomal RNA small sub 21.5 20 0.00069 25.2 0.1 33 26-58 115-148 (279)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=4.1e-21 Score=128.04 Aligned_cols=89 Identities=24% Similarity=0.400 Sum_probs=81.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++||. |++ ..|.++.|.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING-TRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-SEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 3467899999999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCCC
Q psy13181 100 IADGKRNDNKGG 111 (137)
Q Consensus 100 ~a~~~~~~~~~~ 111 (137)
++.+....++.+
T Consensus 115 ~a~~~~~~~~~~ 126 (156)
T 1h2v_Z 115 WDAGFKEGRQYG 126 (156)
T ss_dssp EESCCCTTCC--
T ss_pred ECCCCCCcCCCC
Confidence 999877655433
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=118.16 Aligned_cols=79 Identities=20% Similarity=0.433 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+|||.++++++|+++|++| .|..|.+++++.++.++|||||+|.+.++|.+|+. |++ ..|.|+.|+|.+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG-LRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCC-CEECCEEEEEEEe
Confidence 45789999999999999999999999 99999999999999999999999999999999999 999 9999999999999
Q ss_pred CC
Q psy13181 102 DG 103 (137)
Q Consensus 102 ~~ 103 (137)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.5e-19 Score=112.55 Aligned_cols=91 Identities=54% Similarity=0.985 Sum_probs=82.7
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEE
Q psy13181 17 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 96 (137)
Q Consensus 17 ~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l 96 (137)
..+.+....++|||+|||..+++++|+++|++|.|..|.++.++.++.+++||||+|.+.++|++|+.|++ ..|.++.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l 85 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDG-ALLGDRSL 85 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTT-CEETTEEC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCC-CeECCeEE
Confidence 34555667899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEecCCCCCCC
Q psy13181 97 RLDIADGKRNDN 108 (137)
Q Consensus 97 ~v~~a~~~~~~~ 108 (137)
.|.++.++....
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dng_A 86 RVDIAEGRKQDK 97 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 999998766543
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2.3e-19 Score=113.78 Aligned_cols=90 Identities=29% Similarity=0.431 Sum_probs=82.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++|+. |++ ..|.++.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-CEETTEEC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCEEE
Confidence 3344567899999999999999999999999 99999999998899999999999999999999999 999 99999999
Q ss_pred EEEecCCCCCCCC
Q psy13181 97 RLDIADGKRNDNK 109 (137)
Q Consensus 97 ~v~~a~~~~~~~~ 109 (137)
.|.++.++.....
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999998765443
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=7e-20 Score=119.78 Aligned_cols=86 Identities=19% Similarity=0.379 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|+.| .|..|.++.++.+++++++|||+|.+.++|.+|+. |++ ..|.++.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG-FNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT-EECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 3456899999999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCCCCC
Q psy13181 100 IADGKRNDN 108 (137)
Q Consensus 100 ~a~~~~~~~ 108 (137)
++.++....
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998776543
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.1e-20 Score=112.63 Aligned_cols=86 Identities=27% Similarity=0.431 Sum_probs=79.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|.|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT-CCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEE
Confidence 456899999999999999999999999 99999999999899999999999999999999999 999 999999999999
Q ss_pred cCCCCCCCC
Q psy13181 101 ADGKRNDNK 109 (137)
Q Consensus 101 a~~~~~~~~ 109 (137)
+.++.....
T Consensus 82 a~~~~~~~~ 90 (95)
T 2dnz_A 82 VTERLDGGS 90 (95)
T ss_dssp SSCCCCCCC
T ss_pred cccccCCCC
Confidence 987765443
No 7
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-19 Score=113.75 Aligned_cols=91 Identities=18% Similarity=0.315 Sum_probs=80.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
+......++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++|+. +++ .|.++.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l 88 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKA 88 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEEC
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEE
Confidence 3445567899999999999999999999999 99999999999999999999999999999999999 775 6999999
Q ss_pred EEEecCCCCCCCCCC
Q psy13181 97 RLDIADGKRNDNKGG 111 (137)
Q Consensus 97 ~v~~a~~~~~~~~~~ 111 (137)
.|.++.+....+...
T Consensus 89 ~V~~a~~~~~~~~~~ 103 (116)
T 2cqd_A 89 NVNLAYLGAKPRSLQ 103 (116)
T ss_dssp EEEESTTTCCCCCCC
T ss_pred EEEEcccCCCccccC
Confidence 999998765554433
No 8
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.7e-20 Score=120.82 Aligned_cols=90 Identities=19% Similarity=0.291 Sum_probs=81.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
+......++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|++|+. |++ ..|.++.|
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 94 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPI 94 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT-CBSSSSBC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCeEE
Confidence 3444567899999999999999999999999 99999999998899999999999999999999999 999 99999999
Q ss_pred EEEecCCCCCCCC
Q psy13181 97 RLDIADGKRNDNK 109 (137)
Q Consensus 97 ~v~~a~~~~~~~~ 109 (137)
.|.++.++.....
T Consensus 95 ~v~~a~~~~~~~~ 107 (126)
T 3ex7_B 95 SVDWCFVRGPPKG 107 (126)
T ss_dssp EEEESEESSSCCC
T ss_pred EEEEecCCCCCCC
Confidence 9999987765543
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-19 Score=111.31 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG-FGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEEE
Confidence 4567899999999999999999999999 99999999999899999999999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy13181 100 IADGKRND 107 (137)
Q Consensus 100 ~a~~~~~~ 107 (137)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99877644
No 10
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-19 Score=112.54 Aligned_cols=91 Identities=36% Similarity=0.720 Sum_probs=82.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCC-CCeecEEEEEEcCHHHHHHHHHhCCCeeecCeE
Q psy13181 17 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALLKDGRITVDGLQ 95 (137)
Q Consensus 17 ~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t-~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~ 95 (137)
..+.+..+.++|||+|||..+++++|+++|++|.|..|.++.++.+ +.+++||||+|.+.++|++||.|++ ..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~ 85 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE-ESLGNKR 85 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGT-CEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCC-CEeCCcE
Confidence 3455566779999999999999999999999998889999999887 8999999999999999999999999 9999999
Q ss_pred EEEEecCCCCCCC
Q psy13181 96 VRLDIADGKRNDN 108 (137)
Q Consensus 96 l~v~~a~~~~~~~ 108 (137)
|.|.++.++....
T Consensus 86 l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 86 IRVDVADQAQDKD 98 (104)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998876544
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=111.68 Aligned_cols=87 Identities=21% Similarity=0.398 Sum_probs=80.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~ 99 (137)
.....++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|.+|+.+++ ..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~-~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF-HDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCC-CBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCC-CEECCeEEEEE
Confidence 34566899999999999999999999999 99999999999899999999999999999999999999 99999999999
Q ss_pred ecCCCCCCC
Q psy13181 100 IADGKRNDN 108 (137)
Q Consensus 100 ~a~~~~~~~ 108 (137)
++.++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998776543
No 12
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=114.87 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
.+.++|||+|||+.+++++|+++|++| .|..|.++.++.|++++|||||+|.+.++|++|+. ||+ ..|.|+.|.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng-~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL-TSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEEE
Confidence 346799999999999999999999999 99999999999999999999999999999999999 999 999999999999
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
+...+
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 87543
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.8e-20 Score=113.69 Aligned_cols=88 Identities=23% Similarity=0.382 Sum_probs=81.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++|+. |++ ..|.++.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM-IKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS-CBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEE
Confidence 334567899999999999999999999999 99999999999889999999999999999999999 999 999999999
Q ss_pred EEecCCCCCCC
Q psy13181 98 LDIADGKRNDN 108 (137)
Q Consensus 98 v~~a~~~~~~~ 108 (137)
|.++.+++...
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99998876544
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=2.3e-19 Score=113.78 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=81.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++|+. |++ ..|.++.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG-FQIGMKRL 97 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEEC
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC-CEECCEEE
Confidence 3334566899999999999999999999999 99999999999899999999999999999999998 999 99999999
Q ss_pred EEEecCCCCCCCC
Q psy13181 97 RLDIADGKRNDNK 109 (137)
Q Consensus 97 ~v~~a~~~~~~~~ 109 (137)
+|.++.++.....
T Consensus 98 ~V~~a~~~~~~~~ 110 (115)
T 2cpz_A 98 KVQLKRSKNDSKS 110 (115)
T ss_dssp EEECCCCSCCCCC
T ss_pred EEEEcCCCCcCCC
Confidence 9999988765443
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-19 Score=110.75 Aligned_cols=86 Identities=24% Similarity=0.320 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG-QVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT-EESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEE
Confidence 3456899999999999999999999999 99999999998889999999999999999999998 999 99999999999
Q ss_pred ecCCCCCCC
Q psy13181 100 IADGKRNDN 108 (137)
Q Consensus 100 ~a~~~~~~~ 108 (137)
++.++....
T Consensus 84 ~a~~~~~~~ 92 (99)
T 1whw_A 84 PSTIKKEAS 92 (99)
T ss_dssp ECCCCSTTC
T ss_pred EcCCCcccc
Confidence 999876543
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=112.13 Aligned_cols=87 Identities=21% Similarity=0.352 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|++|+. |++ ..|.++.|.|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT-EEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEE
Confidence 4567899999999999999999999999 99999999998899999999999999999999999 999 99999999999
Q ss_pred ecCCCCCCCC
Q psy13181 100 IADGKRNDNK 109 (137)
Q Consensus 100 ~a~~~~~~~~ 109 (137)
++.++.....
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2cqb_A 88 LAKPMRIKES 97 (102)
T ss_dssp ECCCCCCCCC
T ss_pred eCCCCCCCCC
Confidence 9987765443
No 17
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=114.82 Aligned_cols=87 Identities=21% Similarity=0.446 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++ ++.+++||||+|.+.++|++|+. |++ ..|.|+.|.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNG-KSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSS-CBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 3456899999999999999999999999 99999999988 89999999999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCC
Q psy13181 100 IADGKRNDNKG 110 (137)
Q Consensus 100 ~a~~~~~~~~~ 110 (137)
++.++......
T Consensus 82 ~a~~~~~~~~~ 92 (116)
T 2fy1_A 82 QAKKPSFQSGG 92 (116)
T ss_dssp ECCCSSCSSSS
T ss_pred ECCCCCCCCCC
Confidence 99877654433
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=109.62 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|++|+. |++ ..++|+.|.|.
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 81 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWLGGRQIRTN 81 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEEEEE
Confidence 3466899999999999999999999999 99999999998899999999999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy13181 100 IADGKR 105 (137)
Q Consensus 100 ~a~~~~ 105 (137)
++.+++
T Consensus 82 ~a~~kp 87 (87)
T 3bs9_A 82 WATRKP 87 (87)
T ss_dssp EEC---
T ss_pred ecCCCC
Confidence 998753
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-19 Score=109.47 Aligned_cols=85 Identities=22% Similarity=0.429 Sum_probs=78.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||..+++++|+++|++| .|..|.++.++ ++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG-MTIKENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT-EESSSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 334567899999999999999999999999 99999999998 89999999999999999999998 999 999999999
Q ss_pred EEecCCCCC
Q psy13181 98 LDIADGKRN 106 (137)
Q Consensus 98 v~~a~~~~~ 106 (137)
|.++.+++.
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987764
No 20
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-19 Score=109.79 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=79.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 18 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
........++|||+|||..+++++|+++|++| .|..|.++.+ ++.++++|||+|.+.++|.+|+. |++ ..|.++.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~ 84 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG-RIVATKP 84 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTT-CBSSSSB
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCC-CEeCCcE
Confidence 33445577899999999999999999999999 9999999987 78999999999999999999999 999 9999999
Q ss_pred EEEEecCCCCCCC
Q psy13181 96 VRLDIADGKRNDN 108 (137)
Q Consensus 96 l~v~~a~~~~~~~ 108 (137)
|.|.++.++....
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 85 LYVALAQRKEERQ 97 (103)
T ss_dssp CEEEECSSCCCCC
T ss_pred EEEEEecccccCC
Confidence 9999998876543
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=112.73 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|++|+. |++ ..|.++.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG-AELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS-CCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC-CEECCcEEEE
Confidence 34567899999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCCCC
Q psy13181 99 DIADGKRND 107 (137)
Q Consensus 99 ~~a~~~~~~ 107 (137)
.++.+....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999866543
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=2.9e-19 Score=106.93 Aligned_cols=80 Identities=20% Similarity=0.403 Sum_probs=76.2
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
+.+|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|++|+. |++ ..|+|+.|.|.++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcC-CeeCCcEEEEEecC
Confidence 3689999999999999999999999 99999999998899999999999999999999999 999 99999999999998
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
+++
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 765
No 23
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-19 Score=111.93 Aligned_cols=87 Identities=23% Similarity=0.380 Sum_probs=80.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hC------CCeee
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD------GRITV 91 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~------~~~~l 91 (137)
......++|||+|||+.+++++|+++|.+| .|..|.++.++.++.+++||||+|.+.++|.+|+. ++ + ..|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG-LKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC-EES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC-cEE
Confidence 344567899999999999999999999999 99999999999999999999999999999999999 99 9 999
Q ss_pred cCeEEEEEecCCCCCC
Q psy13181 92 DGLQVRLDIADGKRND 107 (137)
Q Consensus 92 ~g~~l~v~~a~~~~~~ 107 (137)
+|+.|.|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999877544
No 24
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=112.86 Aligned_cols=88 Identities=30% Similarity=0.548 Sum_probs=80.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|.|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG-KSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT-CCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCeEEEE
Confidence 34567899999999999999999999999 99999999998889999999999999999999998 999 9999999999
Q ss_pred EecCCCCCCCC
Q psy13181 99 DIADGKRNDNK 109 (137)
Q Consensus 99 ~~a~~~~~~~~ 109 (137)
.++.++...+.
T Consensus 87 ~~a~~~~~~~~ 97 (102)
T 1x5s_A 87 DQAGKSSDNRS 97 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EECCCCCCCCC
Confidence 99987765543
No 25
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.4e-19 Score=108.88 Aligned_cols=84 Identities=32% Similarity=0.465 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
.....++|||+|||..+++++|+++|+.| ..|.++.++.++.+++||||+|.+.++|++||. |++ ..|.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 34567899999999999999999999986 356677888889999999999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy13181 100 IADGKRND 107 (137)
Q Consensus 100 ~a~~~~~~ 107 (137)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99877654
No 26
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.6e-19 Score=112.06 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=79.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-cee--------EEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCee
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLV--------SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT 90 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~--------~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~ 90 (137)
.....++|||+|||..+++++|+++|++| .|. .|.++.++.++.+++||||+|.+.++|.+|+. |++ ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG-KD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT-CE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC-Cc
Confidence 34567899999999999999999999999 887 69999998899999999999999999999999 999 99
Q ss_pred ecCeEEEEEecCCCCCC
Q psy13181 91 VDGLQVRLDIADGKRND 107 (137)
Q Consensus 91 l~g~~l~v~~a~~~~~~ 107 (137)
|.++.|.|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999876654
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-19 Score=108.27 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=77.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
....+.++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|+++.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT-EEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 334567899999999999999999999999 99999999999999999999999999999999999 999 999999999
Q ss_pred EEecCC
Q psy13181 98 LDIADG 103 (137)
Q Consensus 98 v~~a~~ 103 (137)
|.++++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=109.56 Aligned_cols=84 Identities=18% Similarity=0.316 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEE-EEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i-~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
...++|||+|||..+++++|+++|++| .|..+ .++.++.++.++++|||+|.+.++|++|+. |++ ..|.++.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG-QYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTT-CEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 356899999999999999999999999 99999 999998899999999999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy13181 100 IADGKRND 107 (137)
Q Consensus 100 ~a~~~~~~ 107 (137)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 29
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=111.29 Aligned_cols=86 Identities=29% Similarity=0.454 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcC-C-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCee-ecCeEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPE-Q-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT-VDGLQV 96 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~-~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~-l~g~~l 96 (137)
...+.++|||+|||..+++++|+++|++ | .|..|.++.++ ++.+++||||+|.+.++|.+|+. |++ .. |.|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG-AVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTT-CCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccC-CcccCCEeE
Confidence 3456689999999999999999999999 9 99999999998 89999999999999999999999 999 88 999999
Q ss_pred EEEecCCCCCCC
Q psy13181 97 RLDIADGKRNDN 108 (137)
Q Consensus 97 ~v~~a~~~~~~~ 108 (137)
.|.++.++....
T Consensus 83 ~v~~a~~~~~~~ 94 (104)
T 2dhg_A 83 RLSVAIPKASRV 94 (104)
T ss_dssp CCCBCCCCCSCC
T ss_pred EEEEccCCCcCC
Confidence 999998766443
No 30
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-18 Score=107.88 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|.+| .|..|.++.++ ++.++++|||+|.+.++|++|+. |++ ..|.++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNG-QLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCC-CEeCCCEEEEE
Confidence 4556899999999999999999999999 99999999987 58999999999999999999999 999 99999999999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
++.....
T Consensus 90 ~a~~~~~ 96 (114)
T 2do0_A 90 MDERALP 96 (114)
T ss_dssp ECSCCCC
T ss_pred EcccCCC
Confidence 9875443
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-19 Score=110.14 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=80.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeec-CCCCCeecEEEEEEcCHHHHHHHHH-h-CCCeeecCe
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKD-KETDRFKGFCYVEFVDVENLRQALL-K-DGRITVDGL 94 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~-~~t~~~~g~~fv~f~~~~~a~~al~-l-~~~~~l~g~ 94 (137)
.......++|||+|||..+++++|+++|++| .|..|.++.+ +.++.+++||||+|.+.++|.+|+. | ++ ..|.++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~~g~ 87 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHS-THLYGR 87 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTC-CBSSSC
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccC-CeECCC
Confidence 3344567899999999999999999999999 9999999998 7789999999999999999999999 9 89 999999
Q ss_pred EEEEEecCCCCCC
Q psy13181 95 QVRLDIADGKRND 107 (137)
Q Consensus 95 ~l~v~~a~~~~~~ 107 (137)
.|.|.++.++...
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999877654
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.2e-19 Score=107.34 Aligned_cols=81 Identities=28% Similarity=0.454 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN-KQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT-EEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEE
Confidence 34566899999999999999999999999 99999999999889999999999999999999998 999 9999999999
Q ss_pred EecC
Q psy13181 99 DIAD 102 (137)
Q Consensus 99 ~~a~ 102 (137)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 33
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=112.74 Aligned_cols=82 Identities=21% Similarity=0.403 Sum_probs=74.6
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
.+|||+|||.+++|++|+++|++| .|..|.+++++.|+.++|||||+|.+.++|.+|++ +++...++|++|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 589999999999999999999998 58899999999999999999999999999999998 743278999999999998
Q ss_pred CCCCC
Q psy13181 103 GKRND 107 (137)
Q Consensus 103 ~~~~~ 107 (137)
++++.
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87643
No 34
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=2.4e-19 Score=116.25 Aligned_cols=87 Identities=26% Similarity=0.439 Sum_probs=80.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.....+.++|||+|||..+++++|+++|++| .|..|.++.++.++..++||||+|.+.++|++|+. |++ ..|+|+.|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng-~~i~g~~l 118 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MELDGRRI 118 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT-CCSSSSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCEEE
Confidence 3444567899999999999999999999999 99999999999999999999999999999999999 999 99999999
Q ss_pred EEEecCCCCC
Q psy13181 97 RLDIADGKRN 106 (137)
Q Consensus 97 ~v~~a~~~~~ 106 (137)
.|.++.+++.
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999987653
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.7e-19 Score=111.85 Aligned_cols=88 Identities=18% Similarity=0.358 Sum_probs=80.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee---cCe
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV---DGL 94 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l---~g~ 94 (137)
.+....++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|.+|+. |++ ..+ .++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE-QKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT-TCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC-CcccCCCCc
Confidence 344567899999999999999999999999 99999999999999999999999999999999999 999 877 889
Q ss_pred EEEEEecCCCCCCC
Q psy13181 95 QVRLDIADGKRNDN 108 (137)
Q Consensus 95 ~l~v~~a~~~~~~~ 108 (137)
.|.|.++.++....
T Consensus 87 ~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 87 PIQVKPADSESRGG 100 (106)
T ss_dssp CCEEEECCCCSCCC
T ss_pred eEEEEECCcccccC
Confidence 99999998776543
No 36
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=7.4e-19 Score=134.32 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
.+..+|||+|||..+++++|..+|.+| .|..|.|+.++.++.++|||||+|.+.++|.+||. |++ ..|.|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng-~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG-KKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC-CEECCEEEEEEE
Confidence 345799999999999999999999999 99999999998899999999999999999999998 999 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
+.++..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987653
No 37
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-19 Score=109.30 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEe
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 100 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~ 100 (137)
.....++|||+|||+++++++|+++|++|.+..|.++.++ +++++|+|||+|.+.++|++||.+++ ..|+++.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDK-ANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSS-CCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCC-CeECCcEEEEEE
Confidence 3456689999999999999999999999944489999998 79999999999999999999999999 999999999999
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87655
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7e-19 Score=108.49 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCC---CCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKE---TDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~---t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
...++|||+|||..+++++|+++|++| .|..|.++.++. |+.++++|||+|.+.++|++|+. |++ ..|.++.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG-HTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT-CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC-CeeCCeEEE
Confidence 345799999999999999999999999 999999998876 66899999999999999999999 999 999999999
Q ss_pred EEecCCCCCCC
Q psy13181 98 LDIADGKRNDN 108 (137)
Q Consensus 98 v~~a~~~~~~~ 108 (137)
|.++.++....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99998776544
No 39
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=110.34 Aligned_cols=87 Identities=24% Similarity=0.365 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~ 99 (137)
.....++|||+|||+.+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++||..++ ..|+++.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP-HTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS-EEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC-CeECCEEEEEE
Confidence 34567899999999999999999999999 99999999999999999999999999999999999988 99999999999
Q ss_pred ecCCCCCCC
Q psy13181 100 IADGKRNDN 108 (137)
Q Consensus 100 ~a~~~~~~~ 108 (137)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998776543
No 40
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=8.8e-19 Score=108.33 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=77.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeE--------EEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCC
Q psy13181 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS--------VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDG 87 (137)
Q Consensus 18 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~--------i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~ 87 (137)
...+.....+|||+|||..+++++|+++|++| .|.. +.++.++.++.++|+|||+|.+.++|++|+. |++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 34445667899999999999999999999999 8988 9999999999999999999999999999999 999
Q ss_pred CeeecCeEEEEEecC
Q psy13181 88 RITVDGLQVRLDIAD 102 (137)
Q Consensus 88 ~~~l~g~~l~v~~a~ 102 (137)
..|.|+.|+|.+|+
T Consensus 86 -~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 -KEFSGNPIKVSFAT 99 (99)
T ss_dssp -CBSSSSBCEEEECC
T ss_pred -CEeCCcEEEEEecC
Confidence 99999999999874
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=5.3e-19 Score=106.20 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|.+|+. |++ ..|+|+.|+|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCC-CEECCcEEEEE
Confidence 3566899999999999999999999999 99999999998899999999999999999999998 999 99999999999
Q ss_pred ecC
Q psy13181 100 IAD 102 (137)
Q Consensus 100 ~a~ 102 (137)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 42
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-18 Score=107.95 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC---
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--- 93 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--- 93 (137)
+.+....++|||+|||..+++++|+++|++| .|..|.++.+ +||||+|.+.++|++||+ |++ ..|.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~~ 80 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEG 80 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS-EEEECTTS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc-CCccCCcC
Confidence 3344567899999999999999999999999 9999998865 699999999999999999 999 99999
Q ss_pred --eEEEEEecCCCCCCC
Q psy13181 94 --LQVRLDIADGKRNDN 108 (137)
Q Consensus 94 --~~l~v~~a~~~~~~~ 108 (137)
+.|+|.++.+++..+
T Consensus 81 ~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp CEEEEEEEESSCCSCCC
T ss_pred cceEEEEEeCCCCCCCC
Confidence 999999999876543
No 43
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=9.9e-19 Score=109.98 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=79.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
+......++|||+|||..+++++|+++|++| .|..|.++.++.++.++|+|||+|.+.++|.+|+. |++ ..|.|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT-CCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEE
Confidence 3445567899999999999999999999999 99999999999899999999999999999999999 999 99999999
Q ss_pred EEEecCCCC
Q psy13181 97 RLDIADGKR 105 (137)
Q Consensus 97 ~v~~a~~~~ 105 (137)
.|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998764
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=110.27 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-c--eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC---eeecCeE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-K--LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR---ITVDGLQ 95 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~--i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~---~~l~g~~ 95 (137)
..-.+|||+|||+.+|+++|+++|++| . +.+|.+++|+.|++++|||||+|.+.++|.+|++ |++. +.|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 344689999999999999999999999 4 6789999999999999999999999999999999 9872 2699999
Q ss_pred EEEEecCC
Q psy13181 96 VRLDIADG 103 (137)
Q Consensus 96 l~v~~a~~ 103 (137)
|.|++|++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=4e-19 Score=111.83 Aligned_cols=88 Identities=17% Similarity=0.248 Sum_probs=80.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
+......++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.|+.|
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l 98 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTI 98 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCcEE
Confidence 3334566899999999999999999999999 99999999999899999999999999999999999 999 99999999
Q ss_pred EEEecCCCCCC
Q psy13181 97 RLDIADGKRND 107 (137)
Q Consensus 97 ~v~~a~~~~~~ 107 (137)
.|.++.++...
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=110.76 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.|+.|.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG-QDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEE
Confidence 4456899999999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy13181 100 IADGKR 105 (137)
Q Consensus 100 ~a~~~~ 105 (137)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 47
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=109.28 Aligned_cols=84 Identities=23% Similarity=0.431 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-cee-EEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE---
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ--- 95 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~-~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~--- 95 (137)
....++|||+|||..+++++|+++|++| .|. .|.++.++.++.+++||||+|.+.++|++|+. |++ ..|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING-KPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT-SEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC-CccCCCCcce
Confidence 4566899999999999999999999999 898 99999999999999999999999999999999 999 9999999
Q ss_pred -EEEEecCCCCC
Q psy13181 96 -VRLDIADGKRN 106 (137)
Q Consensus 96 -l~v~~a~~~~~ 106 (137)
|+|.++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999886654
No 48
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=1.4e-18 Score=104.93 Aligned_cols=80 Identities=24% Similarity=0.398 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~ 99 (137)
.....++|||+|||..+++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+.+++ ..|+|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~-~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE-HRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC-EEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC-CEECCEEEEEE
Confidence 34567899999999999999999999999 99999999999999999999999999999999999877 88999999998
Q ss_pred ec
Q psy13181 100 IA 101 (137)
Q Consensus 100 ~a 101 (137)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 49
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-18 Score=105.87 Aligned_cols=87 Identities=22% Similarity=0.364 Sum_probs=78.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 98 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v 98 (137)
......++|||+|||..+++++|+++|.+| .|..|.++.++.++.+++||||+|.+.++|.+|+. ++ ..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~-~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QR-HMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SC-EEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cC-CeeCCeEEEE
Confidence 334566899999999999999999999999 99999999999999999999999999999999998 56 8899999999
Q ss_pred EecCCCCCCC
Q psy13181 99 DIADGKRNDN 108 (137)
Q Consensus 99 ~~a~~~~~~~ 108 (137)
.++.++....
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqg_A 88 KLPNSKQSQD 97 (103)
T ss_dssp ECCCTTCCCC
T ss_pred EecCCCCcCC
Confidence 9998876543
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=112.43 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..++|||+|||..+++++|+++|.+| .|..|.++.++.++.+++||||+|.+.++|.+||..++ ..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~-~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP-HSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCS-EEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCC-cEECCEEEEEEECC
Confidence 44899999999999999999999999 99999999999999999999999999999999999988 99999999999998
Q ss_pred CCCCCC
Q psy13181 103 GKRNDN 108 (137)
Q Consensus 103 ~~~~~~ 108 (137)
++....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 776543
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=2.2e-18 Score=107.52 Aligned_cols=85 Identities=19% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC---eEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG---LQV 96 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g---~~l 96 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++ ++.+++||||+|.+.++|.+|+. |++ ..+.+ +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG-SQTMPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS-CCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC-CccCCCCCccE
Confidence 3457899999999999999999999999 99999999988 68999999999999999999999 999 88887 999
Q ss_pred EEEecCCCCCCC
Q psy13181 97 RLDIADGKRNDN 108 (137)
Q Consensus 97 ~v~~a~~~~~~~ 108 (137)
.|.++.++....
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998776543
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-18 Score=105.67 Aligned_cols=87 Identities=22% Similarity=0.392 Sum_probs=77.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||..+++++|+++|++| .|..|.++.++. .++++|||+|.+.++|.+|+. |++ ..|+++.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 85 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHG-TVVEGRKI 85 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCC-CEECCEEE
Confidence 3445667899999999999999999999999 999999998864 378999999999999999999 999 99999999
Q ss_pred EEEecCCCCCCC
Q psy13181 97 RLDIADGKRNDN 108 (137)
Q Consensus 97 ~v~~a~~~~~~~ 108 (137)
.|.++.++....
T Consensus 86 ~v~~a~~~~~~~ 97 (103)
T 2cq3_A 86 EVNNATARVMTN 97 (103)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcccCCCCC
Confidence 999998776543
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=8.9e-19 Score=107.74 Aligned_cols=80 Identities=18% Similarity=0.406 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
.++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.|.++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNG-YQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEEcC
Confidence 5799999999999999999999999 99999999999899999999999999999999999 999 99999999999998
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 54
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-18 Score=104.29 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEe
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 100 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~ 100 (137)
+....++|||+|||..+++++|+++|++|.|..|.++.+ .+++++|+|||+|.+.++|.+|+.+++ ..|+|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g-~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNR-EYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCS-EEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCC-ceeCCcEEEEEE
Confidence 345678999999999999999999999988888999988 679999999999999999999999999 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
+.++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987654
No 55
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-18 Score=107.19 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=74.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||..+++++|+++|++| .|..|.+..+ +.+++||||+|.+.++|++|+. |++ ..|.++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG-YDYDGYRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEE
Confidence 3444567899999999999999999999999 9999988654 4578999999999999999998 999 99999999
Q ss_pred EEEecCCCCCC
Q psy13181 97 RLDIADGKRND 107 (137)
Q Consensus 97 ~v~~a~~~~~~ 107 (137)
.|.++.++...
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999876544
No 56
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=3.1e-18 Score=106.64 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++ ++||||+|.+.++|++|+. |++ ..|.++.|.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNG-KDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTT-EEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCC-CccCCCEEEEE
Confidence 3456899999999999999999999999 99999886 3499999999999999999 999 99999999999
Q ss_pred ecCCCCCCCCC
Q psy13181 100 IADGKRNDNKG 110 (137)
Q Consensus 100 ~a~~~~~~~~~ 110 (137)
++.++......
T Consensus 79 ~a~~~~~~~~~ 89 (103)
T 2dgu_A 79 FAKPPDQKRKE 89 (103)
T ss_dssp ECCCCCCCCCC
T ss_pred EcCCCcccchh
Confidence 99887655443
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-18 Score=105.80 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=77.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||..+++++|+++|++| .|..|.++.++.+ .++||||+|.+.++|.+|+. |++ ..|.++.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 85 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNG-RKILGKEV 85 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTT-EEETTEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCC-CCcCCCeE
Confidence 3344567899999999999999999999999 9999999988654 58899999999999999999 999 99999999
Q ss_pred EEEecCCCCCCC
Q psy13181 97 RLDIADGKRNDN 108 (137)
Q Consensus 97 ~v~~a~~~~~~~ 108 (137)
.|.++.++...+
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2cqi_A 86 KVNWATTPSSQK 97 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEECCCCcccc
Confidence 999998765443
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=107.17 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
......+|||+|||..+++++|+++|.+| .|..+.++.++.++.++++|||+|.+.++|++|+. |++ ..|.++.|+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTT-CEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCC-CeeCCeEEEE
Confidence 34556899999999999999999999999 88878888888899999999999999999999998 999 9999999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++..+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9987543
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=1.5e-18 Score=105.70 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
+....++|||+|||..+++++|+++|++| .|..|.++.+ ++.++++|||+|.+.++|++|+. |++ ..|+++.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v 80 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNG-MKLSGREIDV 80 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTT-CCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 34567899999999999999999999999 9999988874 68899999999999999999999 999 9999999999
Q ss_pred EecCCCCCCCC
Q psy13181 99 DIADGKRNDNK 109 (137)
Q Consensus 99 ~~a~~~~~~~~ 109 (137)
.++.+......
T Consensus 81 ~~a~~~~~~~~ 91 (92)
T 2dgv_A 81 RIDRNASGPSS 91 (92)
T ss_dssp EECSCCSSCCC
T ss_pred EEcCCCCCCCC
Confidence 99988766543
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.6e-18 Score=110.31 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||.++++++|+++|++| .|..|.++.++.++++++||||+|.+.+++++|+. |++ ..|+|+.|+|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG-FQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC-CEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEE
Confidence 4556899999999999999999999999 99999999998899999999999999999999999 999 99999999999
Q ss_pred ecC
Q psy13181 100 IAD 102 (137)
Q Consensus 100 ~a~ 102 (137)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 61
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=113.72 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ce-eEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KL-VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i-~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|+.| .+ ..|.++.++ ++.++|||||+|.+.++|++||.+++ ..|+++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHR-KKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCS-EEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCC-CccCCeEEEEE
Confidence 4556899999999999999999999999 77 789999998 89999999999999999999999998 99999999999
Q ss_pred ecCCCC
Q psy13181 100 IADGKR 105 (137)
Q Consensus 100 ~a~~~~ 105 (137)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998765
No 62
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-18 Score=107.29 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---hcCcCC-ceeEEEEeecCCCC---CeecEEEEEEcCHHHHHHHHH-hCCCeeec
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVE---RFFPEQ-KLVSVRLVKDKETD---RFKGFCYVEFVDVENLRQALL-KDGRITVD 92 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~---~~f~~~-~i~~i~~~~~~~t~---~~~g~~fv~f~~~~~a~~al~-l~~~~~l~ 92 (137)
......+|||+|||+.+++++|+ ++|++| .|..|.++.++.++ .++|+|||+|.+.++|++|+. |++ ..|+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng-~~~~ 89 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN-VVVD 89 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT-EEET
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC-CEEC
Confidence 34456899999999999999999 999999 99999999887654 455999999999999999999 999 9999
Q ss_pred CeEEEEEecCCCCC
Q psy13181 93 GLQVRLDIADGKRN 106 (137)
Q Consensus 93 g~~l~v~~a~~~~~ 106 (137)
|+.|+|.++.++..
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999998764
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=2.5e-18 Score=107.59 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=76.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
+.+....++|||+|||..+++++|+++|++| .|..|.++.++ ++.++++|||+|.+.++|++|+. |++ ..|.|+.|
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l 100 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG-VPLDGRPM 100 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC-CEeCCcEE
Confidence 3445667899999999999999999999999 99999999998 89999999999999999999999 999 99999999
Q ss_pred EEEecC
Q psy13181 97 RLDIAD 102 (137)
Q Consensus 97 ~v~~a~ 102 (137)
.|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=1.8e-18 Score=116.33 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+.+|++| .|..|.++.++.++.+++||||+|.+.++|.+||. |++ ..|.|+.|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG-AEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC-CEECCEEEEEE
Confidence 4456899999999999999999999999 99999999999999999999999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy13181 100 IADGKRND 107 (137)
Q Consensus 100 ~a~~~~~~ 107 (137)
++.++...
T Consensus 148 ~a~~~~~~ 155 (165)
T 1rk8_A 148 WCFVKGPK 155 (165)
T ss_dssp ESEECC--
T ss_pred EecCCCCC
Confidence 99876543
No 65
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.8e-18 Score=104.32 Aligned_cols=83 Identities=19% Similarity=0.406 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .| .++.+ .++..+++|||+|.+.++|++|+. |++ ..|.++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK-REIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSS-EEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCC-CEeCCeEEEE
Confidence 44567899999999999999999999999 65 44555 568899999999999999999999 999 9999999999
Q ss_pred EecCCCCCCC
Q psy13181 99 DIADGKRNDN 108 (137)
Q Consensus 99 ~~a~~~~~~~ 108 (137)
.++.++...+
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2fc9_A 86 ELQGPRGSPN 95 (101)
T ss_dssp EECSSCCCCC
T ss_pred EEcCCCCCCC
Confidence 9998775443
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=105.90 Aligned_cols=83 Identities=13% Similarity=0.198 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----hcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
.....+|||+|||..+++++|+ ++|++| .|..|.++.++.+ ++||||+|.+.++|++|+. |++ ..|+|+.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g-~~~~gr~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR-YKIGSKK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT-EEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC-CEECCeE
Confidence 3456899999999999999999 999999 9999999988765 7899999999999999999 999 9999999
Q ss_pred EEEEecCCCCCCC
Q psy13181 96 VRLDIADGKRNDN 108 (137)
Q Consensus 96 l~v~~a~~~~~~~ 108 (137)
|+|.++.++....
T Consensus 82 l~V~~a~~~~~~~ 94 (96)
T 2dgx_A 82 ILVSLATGASGPS 94 (96)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEEcCCCCCCC
Confidence 9999998776543
No 67
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=2.4e-18 Score=109.26 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
..+|||+|||+.+++++|+++|++| .|..|.++.++. .++|||||+|.+.++|++|+. |++ ..|+|+.|.|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~-~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEECC
Confidence 4689999999999999999999999 999999998864 478999999999999999999 999 99999999999998
Q ss_pred CCCC
Q psy13181 103 GKRN 106 (137)
Q Consensus 103 ~~~~ 106 (137)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7643
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=105.08 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=75.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||..+++++|+++|++| .|..|.++.++. +.++++|||+|.+.++|.+|+. |++ ..|.++.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 88 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNG-IRLYGRPIN 88 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTT-CEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCC-CEECCCEEE
Confidence 344567899999999999999999999999 999999999886 8999999999999999999999 999 999999999
Q ss_pred EEecCC
Q psy13181 98 LDIADG 103 (137)
Q Consensus 98 v~~a~~ 103 (137)
|.+++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999763
No 69
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=112.98 Aligned_cols=85 Identities=26% Similarity=0.423 Sum_probs=77.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeE--EEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCe----eec
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS--VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRI----TVD 92 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~--i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~----~l~ 92 (137)
......+|||+|||+.+++++|+++|++| .|.. |.+++++.+++++|||||+|.+. ++.+|+. |++ . .|+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g-~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA-LHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT-CCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC-CCCCccCC
Confidence 34566899999999999999999999999 8866 99999999999999999999999 9999999 999 8 999
Q ss_pred CeEEEEEecCCCCCC
Q psy13181 93 GLQVRLDIADGKRND 107 (137)
Q Consensus 93 g~~l~v~~a~~~~~~ 107 (137)
|+.|.|.++.++.+.
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999876543
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=3.3e-18 Score=103.52 Aligned_cols=80 Identities=30% Similarity=0.452 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~ 103 (137)
.++|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|++|+.+++ ..|.|+.|.|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g-~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDE-SLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTT-CEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCC-CEECCcEEEEEEccC
Confidence 4789999999999999999999999 99999999998899999999999999999999999999 999999999999976
Q ss_pred CC
Q psy13181 104 KR 105 (137)
Q Consensus 104 ~~ 105 (137)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=103.54 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCC-eecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDR-FKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~-~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
..++|||+|||..+++++|+++|++| .|..+.++.++.++. ++++|||+|.+.++|.+|+. |++ ..++|+.|.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDG-GQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCC-CeECCeEEEEEE
Confidence 45799999999999999999999999 999999999887655 89999999999999999999 999 999999999999
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=1.8e-18 Score=105.98 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
....+|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|++|+. |++ ..|.++.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLND-RPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEEe
Confidence 345899999999999999999999999 88888888888899999999999999999999999 999 999999999998
Q ss_pred cCC
Q psy13181 101 ADG 103 (137)
Q Consensus 101 a~~ 103 (137)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 763
No 73
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=6.7e-18 Score=106.28 Aligned_cols=84 Identities=21% Similarity=0.371 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEe
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 100 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~ 100 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++.++.++|||||+|.+.++|.+|+...+ ..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEE
Confidence 3456899999999999999999999999 99999999999899999999999999999999999546 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
+.++..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987654
No 74
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=111.98 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=77.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeE
Q psy13181 17 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQ 95 (137)
Q Consensus 17 ~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~ 95 (137)
....+....++|||+|||+.+++++|+++|..| .|..+.++.+..++.++|||||+|.+.++|++||.+++ ..|+++.
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g-~~~~gr~ 95 (124)
T 1wel_A 17 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHK-QYMGNRF 95 (124)
T ss_dssp CCSSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCS-BCSTTSC
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCC-CeECCcE
Confidence 344455677899999999999999999999999 88776666667789999999999999999999999999 9999999
Q ss_pred EEEEecCCCC
Q psy13181 96 VRLDIADGKR 105 (137)
Q Consensus 96 l~v~~a~~~~ 105 (137)
|.|.++.++.
T Consensus 96 i~V~~a~~~~ 105 (124)
T 1wel_A 96 IQVHPITKKG 105 (124)
T ss_dssp BEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999987643
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-19 Score=109.23 Aligned_cols=83 Identities=34% Similarity=0.543 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG-REFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS-BSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC-CeeCCcEEEEEe
Confidence 345799999999999999999999999 99999999999899999999999999999999999 999 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987653
No 76
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.5e-18 Score=106.33 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-c-eeEEEEe-ecCCCCCeecEEEEEEcCHHHHHHHHH-hC--CCeeecCeEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-K-LVSVRLV-KDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQV 96 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~-i~~i~~~-~~~~t~~~~g~~fv~f~~~~~a~~al~-l~--~~~~l~g~~l 96 (137)
...++|||+|||..+++++|+++|.+| . |..+.++ .++.++.+++||||+|.+.++|.+|+. |+ + ..|.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~-~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGR-IQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCC-SCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCC-ceecCCeE
Confidence 456899999999999999999999999 7 9999988 788888999999999999999999999 97 6 89999999
Q ss_pred EEEecCCCCCC
Q psy13181 97 RLDIADGKRND 107 (137)
Q Consensus 97 ~v~~a~~~~~~ 107 (137)
.|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999887653
No 77
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=104.52 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
.+.++|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA-SGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH-HTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC-CeEeeEEEeecC
Confidence 456899999999999999999999999 99999999998899999999999999999999999 999 999999887765
Q ss_pred c
Q psy13181 101 A 101 (137)
Q Consensus 101 a 101 (137)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-17 Score=103.77 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeE-EEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~-i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v 98 (137)
+.....+|||+|||+.+++++|+++|++| .|.. |.++.+ .+++++|+|||+|.+.++|++||..++ ..|+++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~-~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHK-ERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTT-CCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCc-chhCCcEEEE
Confidence 34566899999999999999999999999 8876 788888 679999999999999999999999888 9999999999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++..+..
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99876653
No 79
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=5.2e-19 Score=109.75 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCceEEEcCCCC------CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC-e
Q psy13181 24 PPYTAFVGNLPN------GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG-L 94 (137)
Q Consensus 24 ~~~~l~v~nlp~------~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g-~ 94 (137)
..++|||+|||. .+++++|+++|++| .|..|.++.++.|++++|||||+|.+.++|++|+. |++ ..|.+ +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng-~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG-KRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC-cccCCCe
Confidence 357999999999 99999999999999 99999999999999999999999999999999999 999 99999 9
Q ss_pred EEEEEecCCCC
Q psy13181 95 QVRLDIADGKR 105 (137)
Q Consensus 95 ~l~v~~a~~~~ 105 (137)
.|.|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999987643
No 80
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.2e-18 Score=123.07 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=73.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCCc---eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQK---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~~---i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
..++|||+|||+.+++++|+++|++|. |..|.|++++.|+++++||||+|.+.++|++||. |++ ..|.++.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng-~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT-SCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CeECCEEeEEE
Confidence 456899999999999999999999993 9999999999999999999999999999999999 999 99999999999
Q ss_pred ecCC
Q psy13181 100 IADG 103 (137)
Q Consensus 100 ~a~~ 103 (137)
++.+
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 81
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=109.60 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.++|++||.|++ ..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG-QRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT-EEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC-CEeCCeEEEEEecC
Confidence 34799999999999999999999999 99999999999999999999999999999999999999 99999999999987
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 82
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=8.8e-19 Score=106.64 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
.+|||+|||.++++++|+++|++| .+..+.++.++.+++++|||||+|.+.++|++|++ |++ ..|+|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g-~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK-RELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG-SCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC-CeeCCEEEEEEEC
Confidence 579999999999999999999998 48899999999999999999999999999999998 999 9999999999999
Q ss_pred CCCCC
Q psy13181 102 DGKRN 106 (137)
Q Consensus 102 ~~~~~ 106 (137)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87653
No 83
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=1.1e-17 Score=111.45 Aligned_cols=84 Identities=26% Similarity=0.404 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
.....+|||+|||..+++++|+++|++| .|..|.++.++.++.++|||||+|.+.++|.+|+. |++ ..|.|+.|.|.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT-EESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 3456899999999999999999999999 99999999998899999999999999999999999 999 99999999999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
++.++..
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9987654
No 84
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-17 Score=103.95 Aligned_cols=81 Identities=14% Similarity=0.316 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee--------
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV-------- 91 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l-------- 91 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++ ++.+++||||+|.+.++|.+|+. |++ ..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNG-KFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBT-CCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC-CEEcCCccccC
Confidence 4566899999999999999999999999 99999999998 89999999999999999999999 999 888
Q ss_pred cCeEEEEEecCCC
Q psy13181 92 DGLQVRLDIADGK 104 (137)
Q Consensus 92 ~g~~l~v~~a~~~ 104 (137)
.+++|.|.++.++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999998864
No 85
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=1.4e-17 Score=106.83 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..|.++.++ ++.++++|||+|.+.++|.+|+. |++ ..|.|+.|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTT-EESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCC-CEECCcEEEE
Confidence 44566899999999999999999999999 99999999998 89999999999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987653
No 86
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=100.68 Aligned_cols=78 Identities=18% Similarity=0.420 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++ +++|||+|.+.++|++|+. |++ ..|.++.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHH-YKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT-CBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC-CccCCcEEEEE
Confidence 4567899999999999999999999999 99999886 4699999999999999999 999 99999999999
Q ss_pred ecCCCCCCC
Q psy13181 100 IADGKRNDN 108 (137)
Q Consensus 100 ~a~~~~~~~ 108 (137)
++.++....
T Consensus 76 ~a~~~~~~~ 84 (90)
T 2dnq_A 76 ASKNKSKAS 84 (90)
T ss_dssp CSSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998776543
No 87
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.2e-18 Score=105.78 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~ 103 (137)
...+|||+|||+.+++++|+++|++|.|..|.++.++. ++++|+|||+|.+.++|++||.+++ ..|+++.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR-MLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTT-EEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCC-CeECCeEEEEEECCc
Confidence 45799999999999999999999999888999999876 8999999999999999999999999 999999999998865
Q ss_pred C
Q psy13181 104 K 104 (137)
Q Consensus 104 ~ 104 (137)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 88
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.4e-19 Score=115.90 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=74.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEe
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 100 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~ 100 (137)
.....++|||+|||+++++++|+++|++|.+..|.++.++. ++++|||||+|.+.++|++||.+++ ..|+++.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g-~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDR-ANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCS-CSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCC-CEECCEEEEEEE
Confidence 34566899999999999999999999999555899999986 8999999999999999999999999 999999999999
Q ss_pred cCCCCCC
Q psy13181 101 ADGKRND 107 (137)
Q Consensus 101 a~~~~~~ 107 (137)
+.++...
T Consensus 120 a~~~~~~ 126 (139)
T 2hgn_A 120 NSTTGAS 126 (139)
T ss_dssp CCCSCC-
T ss_pred CCCCCCC
Confidence 8876543
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=1.3e-17 Score=106.88 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=76.2
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~ 103 (137)
.++|||+|||..+++++|+++|++| .|..|.++.++.++.+++||||+|.+.+++.+|+.|++ ..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDE-TVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTT-CEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeECCeEEEEEECCC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999 999999999999886
Q ss_pred CCC
Q psy13181 104 KRN 106 (137)
Q Consensus 104 ~~~ 106 (137)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 90
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=105.85 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-
Q psy13181 12 RYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR- 88 (137)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~- 88 (137)
+.-+........+.++|||+|||+.++|++|+++|++| .|..|.++.+ +++|||+|.+.++|.+|+. +++.
T Consensus 18 ~~~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~ 91 (119)
T 2ad9_A 18 GSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVT 91 (119)
T ss_dssp ----CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHC
T ss_pred ccccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCC
Confidence 33344445555677899999999999999999999999 9999998865 5799999999999999999 8731
Q ss_pred eeecCeEEEEEecCCCCCCC
Q psy13181 89 ITVDGLQVRLDIADGKRNDN 108 (137)
Q Consensus 89 ~~l~g~~l~v~~a~~~~~~~ 108 (137)
..|.|++|.|.++.+++...
T Consensus 92 ~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 92 PVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp CCBTTBCCEEEECSSSSCCC
T ss_pred ceECCeEEEEEEccCCCCCc
Confidence 68999999999998776544
No 91
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=106.03 Aligned_cols=85 Identities=39% Similarity=0.757 Sum_probs=74.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecC-CCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDK-ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 98 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~-~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v 98 (137)
.+....++|||+|||..+++++|+++|++|.|..|.++.++ .+++++|+|||+|.+.++|.+|+.|++ ..|+|+.|.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g-~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE-ESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTT-CCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCC-CEECCeEEEE
Confidence 34456799999999999999999999999988889999887 689999999999999999999999999 9999999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 92
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=2.3e-18 Score=112.39 Aligned_cols=87 Identities=25% Similarity=0.376 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|++|+. |++ ..|.|+.|.
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~i~g~~l~ 120 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG-AVLDGRELR 120 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTT-CCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCEEEE
Confidence 334566899999999999999999999999 99999999998889999999999999999999999 999 999999999
Q ss_pred EEecCCCCCC
Q psy13181 98 LDIADGKRND 107 (137)
Q Consensus 98 v~~a~~~~~~ 107 (137)
|.++++....
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 93
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9.7e-20 Score=115.78 Aligned_cols=85 Identities=25% Similarity=0.370 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeE--------EEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVS--------VRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV 91 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~--------i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l 91 (137)
..+.++|||+|||..+++++|+++|++| .|.. |.++.++.++.+++||||+|.+.++|.+|+. |++ ..|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG-KEF 82 (116)
Confidence 3456899999999999999999999999 8888 8899998889999999999999999999999 999 999
Q ss_pred cCeEEEEEecCCCCCC
Q psy13181 92 DGLQVRLDIADGKRND 107 (137)
Q Consensus 92 ~g~~l~v~~a~~~~~~ 107 (137)
.++.|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999877654
No 94
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=99.24 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..|.++++ +|||+|.+.++|.+|+. |++ ..|.++.|.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDN-TEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTT-EEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCC-CeeCCcEEEE
Confidence 34567899999999999999999999999 9999988633 99999999999999999 999 9999999999
Q ss_pred EecCCCCCCCC
Q psy13181 99 DIADGKRNDNK 109 (137)
Q Consensus 99 ~~a~~~~~~~~ 109 (137)
.++.++.....
T Consensus 77 ~~a~~~~~~~~ 87 (92)
T 2dgt_A 77 QLSTSRLRTAS 87 (92)
T ss_dssp EESSCCCSCCC
T ss_pred EEccCCCCCCC
Confidence 99987765443
No 95
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=106.26 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-c---eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-K---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 97 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~---i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~ 97 (137)
....++|||+|||+++++++|+++|+.| . |..|.++.++. ++++|+|||+|.+.++|++||.+++ ..|+++.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g-~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDR-ESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTT-EEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCC-CeECCeEEE
Confidence 3456899999999999999999999999 6 89999999987 8999999999999999999999999 999999999
Q ss_pred EEecCCCC
Q psy13181 98 LDIADGKR 105 (137)
Q Consensus 98 v~~a~~~~ 105 (137)
|.++..++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 96
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=6.4e-18 Score=110.41 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-c---eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-K---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 97 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~---i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~ 97 (137)
....++|||+|||+++++++|+++|++| . |..|.+++++. ++++|+|||+|.+.++|++||.+++ ..|+++.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g-~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDR-ESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTE-EESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCC-CEECCEEEE
Confidence 4556899999999999999999999999 7 78999999987 9999999999999999999999999 999999999
Q ss_pred EEecCCCC
Q psy13181 98 LDIADGKR 105 (137)
Q Consensus 98 v~~a~~~~ 105 (137)
|.++.+++
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99987543
No 97
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=108.69 Aligned_cols=81 Identities=21% Similarity=0.358 Sum_probs=75.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|++|+. |++ ..|.|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE-EEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC-CEECCEEEE
Confidence 344567899999999999999999999999 99999999998899999999999999999999998 999 999999999
Q ss_pred EEec
Q psy13181 98 LDIA 101 (137)
Q Consensus 98 v~~a 101 (137)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 98
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.6e-18 Score=107.67 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
+..+.++|||+|||..+++++|+++|.+| .|..+.+..+..++.+++||||+|.+.++|.+|+. |++ ..|.|+.|.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG-YKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT-CBCSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEE
Confidence 34466899999999999999999999999 77332222222267889999999999999999999 999 9999999999
Q ss_pred EecCCCCCCC
Q psy13181 99 DIADGKRNDN 108 (137)
Q Consensus 99 ~~a~~~~~~~ 108 (137)
.++.++....
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9998776543
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=105.52 Aligned_cols=79 Identities=14% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
...++|||+|||+++++++|+++|++| .|..|.+++++. +.++|||||+|.+.++|.+|+.+++ ..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~-~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSC-CCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCC-CEECCEEEEEEEc
Confidence 455899999999999999999999999 999999999987 8999999999999999999999999 9999999999986
Q ss_pred CC
Q psy13181 102 DG 103 (137)
Q Consensus 102 ~~ 103 (137)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 100
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=2.7e-18 Score=100.92 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=70.4
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
+|||+|||+++++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|++|+++++ ..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF-HEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSC-CCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCC-CEECCEEEEEEeC
Confidence 58999999999999999999999 99999999998889999999999999999999999999 9999999999875
No 101
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-16 Score=99.53 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hC--CCeeecCeEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD--GRITVDGLQV 96 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~--~~~~l~g~~l 96 (137)
...+.++|||+|||+.+++++|+++|++| .|..|.++.+ +++|||+|.+.++|.+|+. |+ + ..|.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~-~~~~Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVT-PHLRNQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSC-CEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCC-ceECCcEE
Confidence 34566899999999999999999999999 9999988754 5799999999999999998 74 6 78999999
Q ss_pred EEEecCCCCCCC
Q psy13181 97 RLDIADGKRNDN 108 (137)
Q Consensus 97 ~v~~a~~~~~~~ 108 (137)
.|.++.+++...
T Consensus 84 ~V~~a~~~~~~~ 95 (101)
T 2cq1_A 84 YIQYSNHKELKT 95 (101)
T ss_dssp EEEECSCSSCCC
T ss_pred EEEEcCcccCcC
Confidence 999998776443
No 102
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=112.19 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
..++|||+|||+++++++|+++|++| .|..|.++.++.+++++|||||+|.+.++|++||. |++ ..|+|+.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng-~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPG-KVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTT-CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC-CEECCeEeEEE
Confidence 35799999999999999999999998 38899999999999999999999999999999999 999 99999999999
Q ss_pred ecCCC
Q psy13181 100 IADGK 104 (137)
Q Consensus 100 ~a~~~ 104 (137)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98754
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=104.88 Aligned_cols=84 Identities=23% Similarity=0.408 Sum_probs=75.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 18 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
........++|||+|||..+++++|+++|++| .|..|.++.++. .++++|||+|.+.++|++|+. |++ ..|+|+.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~ 98 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHG-TVVEGRK 98 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTT-CEETTEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCC-CEECCEE
Confidence 34445567899999999999999999999999 999999998853 478999999999999999999 999 9999999
Q ss_pred EEEEecCCC
Q psy13181 96 VRLDIADGK 104 (137)
Q Consensus 96 l~v~~a~~~ 104 (137)
|.|.++.++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999875
No 104
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=101.80 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..+ ..++.++|+|||+|.+.++|.+|+. |++ ..|.|+.|.|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v 85 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRSVSL 85 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTE-EEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEE
Confidence 34566899999999999999999999998 66555 3457889999999999999999999 999 9999999999
Q ss_pred EecCCCCCCC
Q psy13181 99 DIADGKRNDN 108 (137)
Q Consensus 99 ~~a~~~~~~~ 108 (137)
.++.++...+
T Consensus 86 ~~a~~~~~~~ 95 (96)
T 1fjc_A 86 YYTGEKGGTR 95 (96)
T ss_dssp EECSSSCCCC
T ss_pred EEcCCCCCCC
Confidence 9998776554
No 105
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=6.2e-18 Score=107.40 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE----
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ---- 95 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~---- 95 (137)
....++|||+|||..+++++|+++|++| .|..|.++.+ +||||+|.+.++|++||. |++ ..|+|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g-~~~~gr~~~~~ 84 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN-TKFRSHEGETA 84 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTT-CBCCCTTSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCC-CEECCcEeeeE
Confidence 3456899999999999999999999999 9999988765 799999999999999999 999 9999988
Q ss_pred -EEEEecCCCCCCCC
Q psy13181 96 -VRLDIADGKRNDNK 109 (137)
Q Consensus 96 -l~v~~a~~~~~~~~ 109 (137)
|+|..+.++...+.
T Consensus 85 ~i~v~~~~~~~~~~~ 99 (115)
T 3beg_B 85 YIRVKVDGPRSPSYG 99 (115)
T ss_dssp BCEEEECC----CCC
T ss_pred EEEeccCCCCCCCCC
Confidence 88888776554443
No 106
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=5e-17 Score=102.22 Aligned_cols=95 Identities=22% Similarity=0.483 Sum_probs=76.7
Q ss_pred ccCCccCCCCCCC---CCCCCCCCceEEEcCCCCC-CCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHH
Q psy13181 5 SYGGYPERYGRNQ---KTLPTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENL 79 (137)
Q Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a 79 (137)
.+.+++.+..... ...+....++|||+|||.. +++++|+++|++| .|..|.+ .+++|||+|.+.++|
T Consensus 4 g~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 4 GSSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CCCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 4555555444332 2233345589999999999 9999999999999 9998877 367999999999999
Q ss_pred HHHHH-hCCCeeecCeEEEEEecCCCCCCC
Q psy13181 80 RQALL-KDGRITVDGLQVRLDIADGKRNDN 108 (137)
Q Consensus 80 ~~al~-l~~~~~l~g~~l~v~~a~~~~~~~ 108 (137)
++|+. |++ ..|+++.|.|.++.+++..+
T Consensus 76 ~~A~~~l~g-~~~~g~~l~V~~a~~~~~~~ 104 (110)
T 1wf1_A 76 RAAVLGENG-RVLAGQTLDINMAGEPKPDR 104 (110)
T ss_dssp HHHHHHHTT-CEETTEECCEEESCCCCSCC
T ss_pred HHHHHHcCC-CEECCeEEEEEECCCCCCCC
Confidence 99998 999 99999999999998655433
No 107
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-18 Score=107.69 Aligned_cols=84 Identities=26% Similarity=0.434 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
...++|||+|||..+++++|+++|++| .+.. .++.++.++.+++||||+|.+.++|++|++|++ ..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGG-CCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCC-cEECCcEEEEEEc
Confidence 457899999999999999999999999 6666 556666678889999999999999999999999 9999999999999
Q ss_pred CCCCCCC
Q psy13181 102 DGKRNDN 108 (137)
Q Consensus 102 ~~~~~~~ 108 (137)
.++...+
T Consensus 93 ~~~~~~~ 99 (101)
T 1fj7_A 93 KGRDGTR 99 (101)
T ss_dssp SCCCCSS
T ss_pred CCCCCCC
Confidence 8776543
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-17 Score=101.28 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-eeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~-~~l~g~~l~v 98 (137)
..+.++|||+|||+.+++++|+++|++| .|..|.++.+ +++|||+|.+.++|.+|+. |++. ..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3456899999999999999999999999 9999988753 5799999999999999999 8651 5699999999
Q ss_pred EecCCCCCCCCCC
Q psy13181 99 DIADGKRNDNKGG 111 (137)
Q Consensus 99 ~~a~~~~~~~~~~ 111 (137)
.++..+...+.++
T Consensus 86 ~~a~~~~~~~~~~ 98 (104)
T 1wex_A 86 NYSTSKRITRPGN 98 (104)
T ss_dssp EECSSSSCCCSCC
T ss_pred EEccCccccCCCC
Confidence 9999877655443
No 109
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-17 Score=99.37 Aligned_cols=77 Identities=19% Similarity=0.389 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec--CeEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD--GLQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~--g~~l~v 98 (137)
.+.++|||+|||..+++++|+++|++| .|..|.+..+ +++|||+|.+.++|++|+. |++ ..|. ++.|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g-~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRG-FPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTT-CBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCC-CEeCCCCcEEEE
Confidence 456899999999999999999999999 9999988753 5699999999999999999 999 9999 999999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=103.39 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-eeecCeEEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQVRLD 99 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~-~~l~g~~l~v~ 99 (137)
....+|||+|||+.++|++|+++|++| .|.+|.++++ +|||||+|.+.++|.+|++ +++. ..|.|++|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456899999999999999999999999 9999999865 5799999999999999999 8631 78999999999
Q ss_pred ecCCCCCCCC
Q psy13181 100 IADGKRNDNK 109 (137)
Q Consensus 100 ~a~~~~~~~~ 109 (137)
++.+++....
T Consensus 88 ~A~~~~~~~~ 97 (105)
T 1sjq_A 88 FSNHKELKTD 97 (105)
T ss_dssp CCSSSSCCCT
T ss_pred EcCCCCCCcc
Confidence 9987765443
No 111
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=7.2e-18 Score=108.79 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=74.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCCcee--EEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLV--SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~--~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~ 97 (137)
.+.....+|||+|||+++++++|+++|++|.|. .|.++.++. ++++|||||+|.+.++|++||.+++ ..|+++.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~-~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK-ERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT-CCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC-CEECCEEEE
Confidence 334566899999999999999999999999665 899999987 8999999999999999999999888 999999999
Q ss_pred EEecCCC
Q psy13181 98 LDIADGK 104 (137)
Q Consensus 98 v~~a~~~ 104 (137)
|..+.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 112
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.4e-17 Score=99.97 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-eeecCeEEEE
Q psy13181 23 EPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~-~~l~g~~l~v 98 (137)
.+.++|||+|||+ .+++++|+++|++| .|..|.+++++ ++|||+|.+.++|.+|+. |++. ..|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 99999999999999 99999998653 599999999999999999 8851 5699999999
Q ss_pred EecCCCCCC
Q psy13181 99 DIADGKRND 107 (137)
Q Consensus 99 ~~a~~~~~~ 107 (137)
.++..+...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876543
No 113
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=2.8e-18 Score=104.21 Aligned_cols=79 Identities=30% Similarity=0.505 Sum_probs=71.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
++|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.+ |.+|+. |++ ..++|+.|.|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g-~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDN-TDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCS-SCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCC-CEECCeEEEEEEcCC
Confidence 589999999999999999999999 9999999999989999999999999999 999999 999 999999999999987
Q ss_pred CCC
Q psy13181 104 KRN 106 (137)
Q Consensus 104 ~~~ 106 (137)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 114
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-17 Score=97.96 Aligned_cols=77 Identities=18% Similarity=0.477 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|||..+++++|+++|++| .|..|.++++ +|||+|.+.++|++|+. |++ ..|.++.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNG-KEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTT-CEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCC-CEECCcEEEEE
Confidence 3556899999999999999999999999 9999988733 99999999999999999 999 99999999999
Q ss_pred ecCCCCCC
Q psy13181 100 IADGKRND 107 (137)
Q Consensus 100 ~a~~~~~~ 107 (137)
++.++...
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=98.18 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....++|||+|||..+++++|+++|++| .|..|.+..+ +++|||+|.+.++|.+|+. |++ ..|.++.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g-~~~~g~~l~v 83 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDN-MPLRGKQLRV 83 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTT-CCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCC-CEeCCceEEE
Confidence 34566899999999999999999999999 9999988754 5699999999999999998 999 9999999999
Q ss_pred EecCCCCCCC
Q psy13181 99 DIADGKRNDN 108 (137)
Q Consensus 99 ~~a~~~~~~~ 108 (137)
.++.++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpj_A 84 RFACHSASLT 93 (99)
T ss_dssp EESSCCSCCC
T ss_pred EEcCCCCCCC
Confidence 9998766543
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=102.45 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC
Q psy13181 22 TEPPYTAFVGNLPNGI------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG 93 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~------~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g 93 (137)
....++|||+|||..+ ++++|+.+|++| .|..|.++ +.++.++|||||+|.+.++|.+|+. |++ ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g-~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS-EECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC-cccCC
Confidence 4456899999999999 789999999999 99999887 4678999999999999999999999 999 99999
Q ss_pred e-EEEEEecCCCC
Q psy13181 94 L-QVRLDIADGKR 105 (137)
Q Consensus 94 ~-~l~v~~a~~~~ 105 (137)
+ .|.|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999987554
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-18 Score=105.39 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-c---eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-K---LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 96 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~---i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l 96 (137)
......+|||+|||+++++++|+++|+.| . |..|.++.++. ++++|+|||+|.+.++|.+||.+++ ..|+++.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~-~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHR-MYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTT-CCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCc-ceeCCeEE
Confidence 34567899999999999999999999998 5 88999999987 8999999999999999999999999 99999999
Q ss_pred EEEecCCCC
Q psy13181 97 RLDIADGKR 105 (137)
Q Consensus 97 ~v~~a~~~~ 105 (137)
.|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999987653
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=99.88 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=70.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||..+++++|+++|++| .|. +.++.+ .+++||||+|.+.++|++|+. |++ ..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 87 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQG-LRLGTDTLR 87 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTT-CCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCC-CEECCcEEE
Confidence 344567899999999999999999999999 775 555543 457899999999999999999 999 999999999
Q ss_pred EEecCCCCC
Q psy13181 98 LDIADGKRN 106 (137)
Q Consensus 98 v~~a~~~~~ 106 (137)
|.++.+++.
T Consensus 88 V~~a~~~~~ 96 (97)
T 2e5j_A 88 VALARQQRD 96 (97)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCCC
Confidence 999987653
No 119
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=7.5e-17 Score=108.02 Aligned_cols=96 Identities=25% Similarity=0.435 Sum_probs=82.8
Q ss_pred cCCccCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH
Q psy13181 6 YGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84 (137)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~ 84 (137)
+.+.......+....+.....+|||+|||..+++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp ETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred ecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 34444444444444444567899999999999999999999999 99999999998889999999999999999999999
Q ss_pred -hCCCeeecCeEEEEEecC
Q psy13181 85 -KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 85 -l~~~~~l~g~~l~v~~a~ 102 (137)
|++ ..|+|+.|.|.+|.
T Consensus 155 ~l~g-~~~~g~~l~V~~As 172 (172)
T 2g4b_A 155 GLNG-MQLGDKKLLVQRAS 172 (172)
T ss_dssp HHTT-CEETTEECEEEECC
T ss_pred HcCC-CEECCeEEEEEeCC
Confidence 999 99999999999873
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=9.6e-17 Score=111.72 Aligned_cols=84 Identities=25% Similarity=0.392 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
+..+.++|||+|||++++|++|+++|++| .|..|.+++++.+++++|||||+|.+.++|.+|+. +++ ..+.++.|++
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~-~~~~g~~i~~ 89 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF-DVIKGKPVRI 89 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh-hhcCCccccc
Confidence 34456899999999999999999999999 99999999999999999999999999999999999 999 9999999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++....
T Consensus 90 ~~~~~~~ 96 (213)
T 4f02_A 90 MWSQRDP 96 (213)
T ss_dssp EECCCCT
T ss_pred ccccccc
Confidence 9987543
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=1.2e-16 Score=109.15 Aligned_cols=88 Identities=18% Similarity=0.377 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
....+|||+|||..+++++|+++|++| .|..|.++.++.++.++|+|||+|.+.++|.+|+..++ ..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~-~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSC-CEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCC-cEECCEEEEEEec
Confidence 355899999999999999999999999 99999999999899999999999999999999999778 9999999999999
Q ss_pred CCCCCCCCCC
Q psy13181 102 DGKRNDNKGG 111 (137)
Q Consensus 102 ~~~~~~~~~~ 111 (137)
.++....+.+
T Consensus 181 ~~k~~~~~~~ 190 (196)
T 1l3k_A 181 LSKQEMASAS 190 (196)
T ss_dssp C---------
T ss_pred CChhHhcccc
Confidence 9887665543
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-16 Score=95.89 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=68.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC---ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 94 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~---~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~ 94 (137)
.......++|||+|||..+++++|+++|++| .|..|.+. +++|||+|.+.++|.+|+. |++ ..|.++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g-~~~~g~ 79 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNG-KVLDGS 79 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS-EEETTE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC-CEeCCc
Confidence 3344567899999999999999999999998 46666543 4599999999999999999 999 999999
Q ss_pred EEEEEecCCCCCC
Q psy13181 95 QVRLDIADGKRND 107 (137)
Q Consensus 95 ~l~v~~a~~~~~~ 107 (137)
.|.|.++.++...
T Consensus 80 ~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 PIEVTLAKPVDKD 92 (99)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=100.62 Aligned_cols=79 Identities=20% Similarity=0.437 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||+|||..+++++|+++|++| .|..|.++.+ ++||||+|.+.++|.+|+. |++ ..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG-TTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCC-CEECCcEEEEEe
Confidence 456899999999999999999999999 9999998865 5699999999999999998 999 999999999999
Q ss_pred cCCCCCCC
Q psy13181 101 ADGKRNDN 108 (137)
Q Consensus 101 a~~~~~~~ 108 (137)
+.++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 98876543
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=99.30 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-eeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~-~~l~g~~l~v 98 (137)
..+.++|||+|||..+++++|+++|++| .|.++.++++ +++|||+|.+.++|.+|+. |++. +.|.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 4567899999999999999999999999 9999988743 5699999999999999999 8872 3589999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++++++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 125
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-16 Score=96.20 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
...++|||+|||..+++++|+++|++| .|..| +.++.++. ||||+|.+.+++.+|+.|++ ..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g-~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQ-HSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSC-CEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCC-eEECCEEEEEEEC
Confidence 345799999999999999999999999 88887 56666655 99999999999999999999 9999999999988
Q ss_pred CCCCC
Q psy13181 102 DGKRN 106 (137)
Q Consensus 102 ~~~~~ 106 (137)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76554
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=101.32 Aligned_cols=77 Identities=31% Similarity=0.563 Sum_probs=70.5
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
++|||+|||..+++++|+++|++| .|..|.++.+ ++++|||+|.+.++|.+|+. |++ ..+.|+.|.|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDG-KVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHH-SCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCC-CeECCcEEEEEEccC
Confidence 479999999999999999999999 9999998876 57799999999999999999 999 999999999999988
Q ss_pred CCCCC
Q psy13181 104 KRNDN 108 (137)
Q Consensus 104 ~~~~~ 108 (137)
+....
T Consensus 75 ~~~~~ 79 (101)
T 2hvz_A 75 MPRRS 79 (101)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 76443
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=1.1e-16 Score=100.63 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||..+++++|+++|++| .|..|.++ +++|||+|.+.++|.+|+. |++ ..|+|+.|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l 95 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHG-KSFANQPL 95 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTT-CEETTEEC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCC-CEECCeEE
Confidence 3344567899999999999999999999999 99999886 5699999999999999999 999 99999999
Q ss_pred EEEecCCCCC
Q psy13181 97 RLDIADGKRN 106 (137)
Q Consensus 97 ~v~~a~~~~~ 106 (137)
.|.++.++..
T Consensus 96 ~V~~a~~~~~ 105 (108)
T 2jvo_A 96 EVVYSKLPAK 105 (108)
T ss_dssp EEESCSCCC-
T ss_pred EEEEecCCCC
Confidence 9999987654
No 128
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=7.5e-18 Score=98.91 Aligned_cols=74 Identities=23% Similarity=0.480 Sum_probs=70.0
Q ss_pred eEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 27 ~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
+|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|++|+.+++ ..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY-HNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS-CCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEC
Confidence 58999999999999999999999 99999999998899999999999999999999999888 8999999999875
No 129
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.7e-16 Score=103.27 Aligned_cols=82 Identities=20% Similarity=0.412 Sum_probs=77.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
.......+|||+|||..+++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+. |++ ..++|+.|.
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~ 160 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG-QDLNGRPLR 160 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT-CEETTEECE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-CccCCcEEE
Confidence 344567899999999999999999999999 99999999998899999999999999999999999 999 999999999
Q ss_pred EEecC
Q psy13181 98 LDIAD 102 (137)
Q Consensus 98 v~~a~ 102 (137)
|.+|+
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99986
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-17 Score=96.98 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=69.8
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
++|||+|||..+++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+. ++ ..++|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--CccCCEEEEEEec
Confidence 479999999999999999999999 99999999999889999999999999999999999 65 8999999999986
No 131
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=1.7e-16 Score=108.38 Aligned_cols=87 Identities=24% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEE
Q psy13181 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 96 (137)
Q Consensus 18 ~~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l 96 (137)
.+......++|||+|||+++++++|+++|++| .|..|.++.++.++.++|||||+|.+.++|.+|+.+++ ..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~-~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP-HKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS-CEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC-CEECCEEe
Confidence 33445567899999999999999999999999 99999999999999999999999999999999999888 99999999
Q ss_pred EEEecCCCC
Q psy13181 97 RLDIADGKR 105 (137)
Q Consensus 97 ~v~~a~~~~ 105 (137)
.|.++.++.
T Consensus 85 ~v~~~~~~~ 93 (196)
T 1l3k_A 85 EPKRAVSRE 93 (196)
T ss_dssp EEEECCC--
T ss_pred eeecccCcc
Confidence 999987654
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=8.9e-17 Score=101.73 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
+....++|||+|||..+++++|+++|++| .|..|.++.+. .++++|||+|.+.++|.+|+. |++ ..++|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 79 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSG-FNVSNRYLVV 79 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTT-CBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEEE
Confidence 44567899999999999999999999999 99999998764 448999999999999999999 999 9999999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++.++.
T Consensus 80 ~~a~~~~ 86 (115)
T 3lqv_A 80 LYYNANR 86 (115)
T ss_dssp EECCHHH
T ss_pred EEecCCh
Confidence 9998654
No 133
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=2.4e-16 Score=97.13 Aligned_cols=78 Identities=18% Similarity=0.390 Sum_probs=68.7
Q ss_pred CCCCCCCceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 19 TLPTEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
..+....++|||+|||. .+++++|+++|++| .|..+.+. +++|||+|.+.++|.+|+. |++ ..+.|+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~ 86 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQ-EMNFGKK 86 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTT-SEETTEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC-CEECCEE
Confidence 33445678999999998 99999999999999 99998873 5799999999999999999 999 9999999
Q ss_pred EEEEecCCCC
Q psy13181 96 VRLDIADGKR 105 (137)
Q Consensus 96 l~v~~a~~~~ 105 (137)
|.|.+++++.
T Consensus 87 l~V~~a~~~~ 96 (97)
T 2xnq_A 87 LILEVSSSNA 96 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCC
Confidence 9999998654
No 134
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.6e-17 Score=99.11 Aligned_cols=77 Identities=19% Similarity=0.440 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
..+.++|||+|||. .+++++|+++|++| .|..|.+. +++|||+|.+.++|.+|+. |++ ..+.|+.|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQ-EMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTC-SSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC-CeeCCcEEEE
Confidence 34678999999998 99999999999999 99998874 5699999999999999999 999 9999999999
Q ss_pred EecCCCCCC
Q psy13181 99 DIADGKRND 107 (137)
Q Consensus 99 ~~a~~~~~~ 107 (137)
.++.++...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999876543
No 135
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=5.5e-17 Score=99.66 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----hcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
..+.++|||+|||..+++++|+ ++|++| .|..|.+.. ++.++++|||+|.+.++|..|+. |++ ..|.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG-FPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT-CEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC-CEECCcE
Confidence 4567899999999999999999 999999 999988763 46678999999999999999999 999 9999999
Q ss_pred EEEEecCCCC
Q psy13181 96 VRLDIADGKR 105 (137)
Q Consensus 96 l~v~~a~~~~ 105 (137)
|.|.++.+++
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998765
No 136
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=93.79 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-h-CCCeeecCeEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K-DGRITVDGLQV 96 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l-~~~~~l~g~~l 96 (137)
......++|||+|||..+++++|+++|++| .|..|.++.+ +++|||+|.+.++|.+|+. | ++ ..+.|+.|
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~-~~~~g~~l 79 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNK-LIVNGRRL 79 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTT-CEETTEEC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCC-eeECCCEE
Confidence 334566899999999999999999999999 9999988864 5799999999999999999 8 88 99999999
Q ss_pred EEEecC
Q psy13181 97 RLDIAD 102 (137)
Q Consensus 97 ~v~~a~ 102 (137)
.|.+++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999874
No 137
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=9.4e-17 Score=109.18 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||+|||..+++++|+++|++| .|..|.++.++ ++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.|.+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng-~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG-VPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTT-CBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEE
Confidence 346899999999999999999999999 99999999998 88999999999999999999999 999 999999999999
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8764
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=4.8e-16 Score=103.30 Aligned_cols=81 Identities=22% Similarity=0.424 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
.++|||+|||+.+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|.+|+. |++ ..+.++.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG-LRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC-CccCCceEEEEecC
Confidence 4789999999999999999999999 99999999999899999999999999999999999 999 99999999999998
Q ss_pred CCCC
Q psy13181 103 GKRN 106 (137)
Q Consensus 103 ~~~~ 106 (137)
+...
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 6543
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-16 Score=98.75 Aligned_cols=75 Identities=19% Similarity=0.373 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
...++|||+|||..+++++|+++|++| .|..+.+.. +++||||+|.+.++|.+|+. |++ ..|+|+.|+|.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALAN-FPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTT-CEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEEe
Confidence 345899999999999999999999999 999998873 46799999999999999999 999 999999999999
Q ss_pred cCCC
Q psy13181 101 ADGK 104 (137)
Q Consensus 101 a~~~ 104 (137)
++++
T Consensus 98 a~~~ 101 (101)
T 2la4_A 98 GKER 101 (101)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8764
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=4.1e-17 Score=101.20 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEe
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 100 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~ 100 (137)
....++|||+|||..+++++|+++|++| .|..|.++.++ ++.++|+|||+|.+.++|++|+. ++ ..|+|+.|.|..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~-~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQ-INFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CC-CEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CC-CeECCEEEEEEE
Confidence 3456899999999999999999999999 99999999998 89999999999999999999999 88 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 141
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=102.84 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----hcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
..+..+|||+|||+.+++++|+ ++|++| .|..|.+.. ++.++|||||+|.+.++|..|+. |++ ..|.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng-~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQG-YPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTT-CCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCC-CEeCCCE
Confidence 4456899999999999999876 689999 898887743 57789999999999999999999 999 9999999
Q ss_pred EEEEecCCCC
Q psy13181 96 VRLDIADGKR 105 (137)
Q Consensus 96 l~v~~a~~~~ 105 (137)
|.|.++.++.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998765
No 142
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=1.2e-16 Score=101.01 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....+|||+|||+.+++++|+++|++| .|..+.+.. ..++|||||+|.+.++|++|++ |++ ..|+|+.|+|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng-~~l~Gr~i~V 99 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNN-IEFRGSVITV 99 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTT-EEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCC-CEECCeEEEE
Confidence 4456899999999999999999999988 477776643 2468899999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++...+.
T Consensus 100 ~~a~~~p~ 107 (111)
T 2jvr_A 100 ERDDNPPP 107 (111)
T ss_dssp EESCC---
T ss_pred EECCCCCC
Confidence 99976543
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.9e-17 Score=104.50 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ce----eEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KL----VSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVR 97 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i----~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~ 97 (137)
....+|||+|||+++++++|+++|++| .| ..|.++.++ +++++|+|||+|.+.++|++||..++ ..|+++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~-~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHK-DLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTT-EESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCC-CeeCCeEEE
Confidence 456899999999999999999999999 64 689998885 79999999999999999999999988 999999999
Q ss_pred EEecCCCC
Q psy13181 98 LDIADGKR 105 (137)
Q Consensus 98 v~~a~~~~ 105 (137)
|..+.+++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99886543
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=3.9e-16 Score=104.02 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
+.++|||+|||.++++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+. +++ ..+.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG-ITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC-CEeCCcEEEEEec
Confidence 35799999999999999999999999 99999999998899999999999999999999999 999 9999999999999
Q ss_pred CCCCC
Q psy13181 102 DGKRN 106 (137)
Q Consensus 102 ~~~~~ 106 (137)
.+...
T Consensus 81 ~~~~~ 85 (168)
T 1b7f_A 81 RPGGE 85 (168)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87653
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=6.3e-16 Score=106.96 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|||+|||..+++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.|.++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~i~V~~a 202 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNL-FDLGGQYLRVGKA 202 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBCSSSBCEEEEC
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccC-CEeCCcEEEEEEe
Confidence 45799999999999999999999999 99999999998899999999999999999999999 999 9999999999999
Q ss_pred CCCCCC
Q psy13181 102 DGKRND 107 (137)
Q Consensus 102 ~~~~~~ 107 (137)
.++...
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 877544
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=2.4e-16 Score=104.19 Aligned_cols=80 Identities=31% Similarity=0.480 Sum_probs=72.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
......++|||+|||+.+++++|+++|++| .|..|.++.+ ++|||||+|.+.++|..|+. |++ ..|.|+.|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~ 141 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDG-RTLCGCRVR 141 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSS-SCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCC-CEECCeEEE
Confidence 334567899999999999999999999999 9999999865 47899999999999999999 999 999999999
Q ss_pred EEecCCCC
Q psy13181 98 LDIADGKR 105 (137)
Q Consensus 98 v~~a~~~~ 105 (137)
|.++.+++
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998764
No 147
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=3e-16 Score=94.53 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
.....|+|+||++.++|++|+++|.+| .|..+.+.. ++|||||+|.+.++|.+|++ ||+ ..|.++.|+|.+
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~-~~l~gr~I~V~~ 77 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN-CVLANTTIFAES 77 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT-EEETTEEEEEEC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC-CEECCcEEEEEE
Confidence 345689999999999999999999999 999998864 47899999999999999999 999 999999999999
Q ss_pred cC
Q psy13181 101 AD 102 (137)
Q Consensus 101 a~ 102 (137)
|.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 148
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=95.40 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=67.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-c-eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-K-LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~-i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
....++|||+|||..+++++|+++|++| . +..+.+. .+++|||+|.+.++|++|+. |++...|.|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 3456899999999999999999999999 7 5555442 36799999999999999999 99756899999999
Q ss_pred EecCCCCCC
Q psy13181 99 DIADGKRND 107 (137)
Q Consensus 99 ~~a~~~~~~ 107 (137)
.++.++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=96.74 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEE-EEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i-~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
....++|||+|||+.+++++|+++|++| .|..+ .++.++.++ .|||+|.+.++|.+|+. |++ ..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V 86 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNG-FQLENFTLKV 86 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTT-CBCSSCBCEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCC-CEECCcEEEE
Confidence 3456899999999999999999999999 99999 588776543 39999999999999999 999 9999999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++.++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998773
No 150
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.9e-16 Score=96.76 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC-eeecCeEEE
Q psy13181 22 TEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR-ITVDGLQVR 97 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~-~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~-~~l~g~~l~ 97 (137)
..+.++|||+|||++ +++++|+++|++| .|..|.+++. +++|||+|.+.++|.+|+. |++. ..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 9999999999999 9999988743 5799999999999999999 8631 679999999
Q ss_pred EEecCCCCCC
Q psy13181 98 LDIADGKRND 107 (137)
Q Consensus 98 v~~a~~~~~~ 107 (137)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999876644
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=5.9e-16 Score=103.15 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=74.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eE
Q psy13181 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQ 95 (137)
Q Consensus 20 ~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~ 95 (137)
.......+|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|.+|+. |++ ..+.| ++
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~~~ 162 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN-VIPEGGSQP 162 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CCCTTCSSC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC-CEecCCCeE
Confidence 334567899999999999999999999999 99999999998889999999999999999999999 999 99977 99
Q ss_pred EEEEec
Q psy13181 96 VRLDIA 101 (137)
Q Consensus 96 l~v~~a 101 (137)
|.|.+|
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999875
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=95.42 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=64.2
Q ss_pred ceEEEcCCCCCC------CHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe-EE
Q psy13181 26 YTAFVGNLPNGI------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL-QV 96 (137)
Q Consensus 26 ~~l~v~nlp~~~------~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~-~l 96 (137)
++|||+|||..+ ++++|+++|++| .|..+.++ +.++.++|+|||+|.+.++|.+|+. |++ ..|.|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG-YKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSS-CCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcC-cccCCceeE
Confidence 689999999999 679999999999 99999877 4578899999999999999999999 999 999998 87
Q ss_pred EE
Q psy13181 97 RL 98 (137)
Q Consensus 97 ~v 98 (137)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 66
No 153
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=3.4e-17 Score=109.25 Aligned_cols=82 Identities=18% Similarity=0.407 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEec
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIA 101 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a 101 (137)
....+|||+|||..+++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+.+++ ..++|++|.|.++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~-~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF-IDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSE-ECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCC-EEeCCeEEEEeec
Confidence 345799999999999999999999999 99999999998889999999999999999999999999 9999999999999
Q ss_pred CCCC
Q psy13181 102 DGKR 105 (137)
Q Consensus 102 ~~~~ 105 (137)
.++.
T Consensus 164 ~pk~ 167 (167)
T 2cjk_A 164 EPRH 167 (167)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8763
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=1.1e-15 Score=104.38 Aligned_cols=83 Identities=25% Similarity=0.443 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
....+|||+|||..+++++|+++|++| .|..+.++.++.++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG-MQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEECCEEEEEEE
Confidence 466899999999999999999999999 99999999998889999999999999999999999 999 999999999999
Q ss_pred cCCCCC
Q psy13181 101 ADGKRN 106 (137)
Q Consensus 101 a~~~~~ 106 (137)
+.++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=1.9e-15 Score=91.33 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=66.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
..++|||+|||+.+++++|+++|++|.|..+.+. +++++|||+|.+.++|++|+. |++ ..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQ-YSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTT-EEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCC-CeECCcEEEEEEcC
Confidence 4578999999999999999999999866666663 467899999999999999999 999 99999999999987
Q ss_pred CCC
Q psy13181 103 GKR 105 (137)
Q Consensus 103 ~~~ 105 (137)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 156
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-15 Score=91.03 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|| .+++++|+++|++| .|..|.+. ..+++|||+|.+.++|.+|+. |++ ..|.++.|.|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g-~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTT-EEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEEE
Confidence 345689999996 89999999999999 99999884 346799999999999999998 999 99999999999
Q ss_pred ecCCCCCC
Q psy13181 100 IADGKRND 107 (137)
Q Consensus 100 ~a~~~~~~ 107 (137)
++.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 157
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=104.54 Aligned_cols=83 Identities=20% Similarity=0.361 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEE--E---eecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVR--L---VKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 94 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~--~---~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~ 94 (137)
..+..+|||+|||+.+++++|+.+|++| .|..+. + +....++.++|||||+|.+.++|.+|+. |++ ..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng-~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANG-YVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTT-BEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCC-CEeCCc
Confidence 4566899999999999999999999999 765530 0 1112357889999999999999999999 999 999999
Q ss_pred EEEEEecCCCC
Q psy13181 95 QVRLDIADGKR 105 (137)
Q Consensus 95 ~l~v~~a~~~~ 105 (137)
.|.|.++.+..
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 158
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=91.78 Aligned_cols=78 Identities=24% Similarity=0.474 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..++|||+|||..+++++|+++|++| .|..|.++.+ +++||||+|.+.++|++++.. . +.+.++.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~-~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-D-LIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-E-EEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-C-ceeCCEEEEEEecC
Confidence 45899999999999999999999999 9999988754 578999999999998764333 3 66799999999998
Q ss_pred CCCCCC
Q psy13181 103 GKRNDN 108 (137)
Q Consensus 103 ~~~~~~ 108 (137)
++....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 776543
No 159
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.2e-15 Score=101.27 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=72.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE--E
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ--V 96 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~--l 96 (137)
......+|||+|||..+++++|+++|++| .+..+.++.++.++.++++|||+|.+.++|.+|+. |++ ..+.|+. |
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~~~i 162 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG-QKPSGATEPI 162 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CCCTTCSSCC
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC-CccCCCccce
Confidence 34456899999999999999999999999 99999999998889999999999999999999999 999 9999964 8
Q ss_pred EEEec
Q psy13181 97 RLDIA 101 (137)
Q Consensus 97 ~v~~a 101 (137)
.|.+|
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88775
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=2.5e-15 Score=91.18 Aligned_cols=78 Identities=26% Similarity=0.479 Sum_probs=61.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCC-eeecCeEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR-ITVDGLQVRL 98 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~-~~l~g~~l~v 98 (137)
+.....+|||+|||+++++++|+++|++| .|.+|.++.+ ++|||||+|.+.++|++ +++. +.+.++.|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEE
Confidence 44567899999999999999999999999 9999988764 57899999999999884 3331 5567999999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987653
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.61 E-value=2.9e-15 Score=104.22 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|||+|||..+++++|+++|++| .|..|.++.+.. .++++|||+|.+.++|.+|+. ||+ ..|+|++|.|.++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng-~~~~g~~i~V~~a 178 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNG-MLLNDRKVFVGRF 178 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCC-CEECCEEEEEEEc
Confidence 45789999999999999999999999 999999998863 478999999999999999999 999 9999999999999
Q ss_pred CCCC
Q psy13181 102 DGKR 105 (137)
Q Consensus 102 ~~~~ 105 (137)
.++.
T Consensus 179 ~~~~ 182 (213)
T 4f02_A 179 KSRK 182 (213)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 8764
No 162
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=7.9e-15 Score=98.50 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
.....+|||+|||..+++++|+++|++| .|..+ ..++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.|.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v~ 169 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG-AEIDGRSVSLY 169 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE-EEETTEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 4466899999999999999999999999 76554 4567889999999999999999999 999 99999999999
Q ss_pred ecCCCC
Q psy13181 100 IADGKR 105 (137)
Q Consensus 100 ~a~~~~ 105 (137)
++.+++
T Consensus 170 ~a~~k~ 175 (175)
T 1fje_B 170 YTGEKG 175 (175)
T ss_dssp ECSSCC
T ss_pred ecCCCC
Confidence 998764
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=2.9e-15 Score=103.62 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+|||.++++++|+++|++| .|..|.++.++.++.++++|||+|.+.++|.+|+. |++ ..|.++.|.|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS-VMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS-CCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC-CeeCCeeEEEecC
Confidence 34799999999999999999999999 99999999998889999999999999999999999 999 9999999999887
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=95.08 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
..++|||+|||..+++++|+++|++| .|..|.++. .+++|||+|.+.++|++|+. ||+ ..|.++.|.|.++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g-~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAY-SKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTT-CBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCC-CEECCeEEEEEEC
Confidence 45799999999999999999999999 999988764 45699999999999999999 999 9999999999998
Q ss_pred CCC
Q psy13181 102 DGK 104 (137)
Q Consensus 102 ~~~ 104 (137)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 754
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=2.2e-14 Score=92.15 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=65.7
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecE-EEEEEcCHHHHHHHHH-hCCCeeecC--eEEEEE
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGF-CYVEFVDVENLRQALL-KDGRITVDG--LQVRLD 99 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~-~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~v~ 99 (137)
...|||+||++.+++++|+++|++| .|.+|.++. + .|+ |||+|.+.++|..|+. |+| ..|.+ +.|+|.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG-~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNG-ADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTT-CCCBTTBSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCC-CEecCCCeEEEEE
Confidence 3457899999999999999999999 999998864 2 265 9999999999999999 999 99987 689999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
+|+++..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9987753
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=4.7e-15 Score=99.26 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecC--eEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDG--LQVR 97 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~ 97 (137)
.....+|||+||+..+++++|+++|++| .|.+|.+..+. .+++|||+|.+.++|+.|+. |+| ..|.+ +.|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG-~~i~g~g~~L~ 117 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDG-QNIYNACCTLR 117 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTT-BCSSSSCSCEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCC-CEecCCCcEEE
Confidence 3445679999999999999999999999 99999886432 46799999999999999999 999 99965 9999
Q ss_pred EEecCCCCC
Q psy13181 98 LDIADGKRN 106 (137)
Q Consensus 98 v~~a~~~~~ 106 (137)
|.+++++..
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999998753
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.4e-15 Score=98.06 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~ 103 (137)
++|||+|||.++++++|+++|++| .|..|.++.++. +.++++|||+|.+.++|.+|+. +++ ..+.++.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNG-KQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCC-CccCCCeeEEEEcCC
Confidence 589999999999999999999999 999999998875 6789999999999999999998 999 999999999999876
Q ss_pred CCC
Q psy13181 104 KRN 106 (137)
Q Consensus 104 ~~~ 106 (137)
...
T Consensus 79 ~~~ 81 (166)
T 3md3_A 79 SQQ 81 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 168
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=93.28 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCC---CCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKET---DRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVR 97 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t---~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~ 97 (137)
...++|||+|||+.+++++|+++|++| .|. +.++.++.+ ++++|||||+|.+.++|++||. |+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcEEE
Confidence 456899999999999999999999999 887 888887776 6889999999999999999998 73 24555555
Q ss_pred EEec
Q psy13181 98 LDIA 101 (137)
Q Consensus 98 v~~a 101 (137)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5443
No 169
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=1.9e-14 Score=93.03 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=68.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecE-EEEEEcCHHHHHHHHH-hCCCeeecC--eEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGF-CYVEFVDVENLRQALL-KDGRITVDG--LQVR 97 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~-~fv~f~~~~~a~~al~-l~~~~~l~g--~~l~ 97 (137)
...-.|||+||+..+++++|+++|++| .|.+|.++.+. +++ |||+|.+.++|.+|+. |+| ..|.+ ..|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG-~~i~g~~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDG-QNIYNACCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTT-CEEETTEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCC-CeecCCCcEEE
Confidence 445678899999999999999999999 99999887542 456 9999999999999999 999 99988 8999
Q ss_pred EEecCCCCC
Q psy13181 98 LDIADGKRN 106 (137)
Q Consensus 98 v~~a~~~~~ 106 (137)
|.+++++.-
T Consensus 100 I~~ak~~~l 108 (130)
T 3zzy_A 100 IDFSKLTSL 108 (130)
T ss_dssp EEECSCSSC
T ss_pred EEecCCCce
Confidence 999987753
No 170
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.9e-15 Score=94.69 Aligned_cols=76 Identities=9% Similarity=0.188 Sum_probs=67.6
Q ss_pred ceEEEcCC----CCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcC----HHH----HHHHHH---hCCCe
Q psy13181 26 YTAFVGNL----PNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD----VEN----LRQALL---KDGRI 89 (137)
Q Consensus 26 ~~l~v~nl----p~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~----~~~----a~~al~---l~~~~ 89 (137)
.+|||+|| |+.+++.+|+.+|++| .|..+.++.|+.|+.++||+||+|.+ .+. |.+|+. +++ .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng-~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG-C 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC-E
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC-C
Confidence 68999999 9999999999999999 99999999999999999999999995 322 666655 689 9
Q ss_pred eecCeEEEEEecC
Q psy13181 90 TVDGLQVRLDIAD 102 (137)
Q Consensus 90 ~l~g~~l~v~~a~ 102 (137)
.|+|+.|+|.+..
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999865
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=2e-14 Score=99.75 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCceEEEcCCC-CCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEe
Q psy13181 24 PPYTAFVGNLP-NGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDI 100 (137)
Q Consensus 24 ~~~~l~v~nlp-~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~ 100 (137)
+..+|||+||| ..+++++|+++|++| .|.+|.++.++ +|+|||+|.+.++|++|+. |++ ..|.|+.|.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng-~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNN-NFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTT-CEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCC-CEECCceEEEEE
Confidence 35799999999 899999999999999 99999997653 6799999999999999999 999 999999999999
Q ss_pred cCCCC
Q psy13181 101 ADGKR 105 (137)
Q Consensus 101 a~~~~ 105 (137)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87543
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=93.40 Aligned_cols=77 Identities=14% Similarity=0.316 Sum_probs=67.3
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeee-----c
Q psy13181 22 TEPPYTAFV--GNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITV-----D 92 (137)
Q Consensus 22 ~~~~~~l~v--~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l-----~ 92 (137)
..+..+||| +||+..+++++|+++|++| .|..|.++.+ ++||||+|.+.++|++|+. ||+ ..| .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG-~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNG-KEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTT-CEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCC-CEEccccCC
Confidence 445688999 7799999999999999999 9988877532 5799999999999999999 999 887 6
Q ss_pred CeEEEEEecCCCC
Q psy13181 93 GLQVRLDIADGKR 105 (137)
Q Consensus 93 g~~l~v~~a~~~~ 105 (137)
+.+|.|.++...+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999987544
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.5e-14 Score=96.78 Aligned_cols=81 Identities=20% Similarity=0.425 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCC--CeecEEEEEEcCHHHHHHHHH-hCCCeeec---CeEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETD--RFKGFCYVEFVDVENLRQALL-KDGRITVD---GLQV 96 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~--~~~g~~fv~f~~~~~a~~al~-l~~~~~l~---g~~l 96 (137)
..++|||+|||+++++++|+++|++| .|..|.++.++.++ .++++|||+|.+.++|.+|+. |++ ..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN-MKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT-TCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC-cEEccCCccce
Confidence 45799999999999999999999999 99999999998876 899999999999999999999 998 6665 5778
Q ss_pred EEEecCCCC
Q psy13181 97 RLDIADGKR 105 (137)
Q Consensus 97 ~v~~a~~~~ 105 (137)
.+..+.+..
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 887776543
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.7e-14 Score=92.32 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLD 99 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~ 99 (137)
....++|||+|| .+++++|+++|++| .|..|.+. .+++||||+|.+.++|.+|+. |++ ..|.|+.|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng-~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNG-TQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTT-CBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCC-CEECCeEEEEE
Confidence 356689999996 69999999999999 99888885 346799999999999999998 999 99999999999
Q ss_pred ecCCCCC
Q psy13181 100 IADGKRN 106 (137)
Q Consensus 100 ~a~~~~~ 106 (137)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987653
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=2.9e-14 Score=102.63 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----hcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVE----RFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~----~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
..+.++|||+|||..+++++|+ ++|++| .|..|.+++ ++++++||||+|.+.++|.+|+. |++ ..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG-FPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCcE
Confidence 4567899999999999999966 899999 999998875 57789999999999999999998 999 9999999
Q ss_pred EEEEecCCCC
Q psy13181 96 VRLDIADGKR 105 (137)
Q Consensus 96 l~v~~a~~~~ 105 (137)
|+|.++..+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.56 E-value=3.9e-14 Score=97.41 Aligned_cols=77 Identities=14% Similarity=0.371 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecCC
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADG 103 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~~ 103 (137)
.++|||+|||..+++++|+++|++| .|..|.++++.. +.++|+|||+|.+.++|.+|+...+ ..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4789999999999999999999999 999999998864 8899999999999999999999556 789999999998764
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=1.1e-14 Score=96.99 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEecC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~a~ 102 (137)
..++|||+|||.++++++|+++|++| .|..|.+++++.++.++|+|||+|.+.++|.+|+.. + ..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~-~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-Q-HILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-C-CEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-c-cccCCeEccccccc
Confidence 35799999999999999999999999 999999999998999999999999999999999983 4 68899999998876
Q ss_pred CC
Q psy13181 103 GK 104 (137)
Q Consensus 103 ~~ 104 (137)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.2e-14 Score=87.36 Aligned_cols=71 Identities=32% Similarity=0.606 Sum_probs=62.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC------------ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCee
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ------------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRIT 90 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~------------~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~ 90 (137)
...++|||+|||..+++++|+++|++| .+..+.+..+ +++|||+|.+.++|.+|+.|++ ..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g-~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDG-II 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTT-CE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCC-CE
Confidence 456899999999999999999999887 4677776543 6799999999999999999999 99
Q ss_pred ecCeEEEEEe
Q psy13181 91 VDGLQVRLDI 100 (137)
Q Consensus 91 l~g~~l~v~~ 100 (137)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=86.97 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=62.7
Q ss_pred Cce-EEEcCCCCCCCHHH----HHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 25 PYT-AFVGNLPNGITQGD----VERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 25 ~~~-l~v~nlp~~~~e~~----l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
..+ |||+|||+.+++++ |+++|++| .|.+| ++ |+|||+|.+.++|.+|++ |++ ..|.|++|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G-~~l~gr~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMEN-EDVFGNRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTT-CCSSSSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcC-CccCCceE
Confidence 445 99999999999988 55789998 57666 33 899999999999999999 999 99999999
Q ss_pred EEEecCCCCCC
Q psy13181 97 RLDIADGKRND 107 (137)
Q Consensus 97 ~v~~a~~~~~~ 107 (137)
+|.+|+.++.-
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999987653
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=2.6e-14 Score=95.62 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec---CeEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD---GLQVR 97 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~---g~~l~ 97 (137)
....+|||+|||..+++++|+++|++| .|..+.++.++ ++.++++|||+|.+.++|.+|+. |++ ..+. +++|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~~~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ-AQTMEGCSSPMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT-SCCCTTCSSCCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC-CcccCCCCCCeE
Confidence 356799999999999999999999999 99999999886 48899999999999999999999 999 6665 39999
Q ss_pred EEecC
Q psy13181 98 LDIAD 102 (137)
Q Consensus 98 v~~a~ 102 (137)
|.+|.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=8.2e-14 Score=100.34 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCC-CHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNGI-TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~-~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
.....+|||+|||..+ ++++|+++|+.| .|..+.++.+. ++.++++|||+|.+.++|.+|+. |++ ..|+|+.|.|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~l~v 258 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADG-LSLGGSHLRV 258 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTT-CEETTEECEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCC-CccCCeEEEE
Confidence 3466899999999995 999999999999 99999998887 68999999999999999999999 999 9999999999
Q ss_pred EecCCCCC
Q psy13181 99 DIADGKRN 106 (137)
Q Consensus 99 ~~a~~~~~ 106 (137)
.++.++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99987764
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=2.9e-14 Score=103.05 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHhcCcCC-ceeEEEEeecCC-CCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKE-TDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~-~~e~~l~~~f~~~-~i~~i~~~~~~~-t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v 98 (137)
.....+|||+|||.. +++++|+++|++| .|..|.++.+.. |+.++++|||+|.+.++|.+|+.|++ ..|.|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g-~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNR-SLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTT-EEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcC-CEECCcEEEE
Confidence 446689999999999 9999999999999 999999998876 58899999999999999999999999 9999999999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++.+++
T Consensus 286 ~~a~~k~ 292 (292)
T 2ghp_A 286 SLADKKP 292 (292)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998764
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=7.4e-14 Score=100.56 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
...+|||+|||..+++++|+++|++| .|..+.++.++.++.++|+|||+|.+.++|.+|+. |++ ..++|+.|.|.++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~i~v~~a 172 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG-KPLGPRTLYVHWT 172 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEETTEECEEEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC-CEeCCcEEEEEEC
Confidence 45799999999999999999999999 99999999999899999999999999999999998 999 9999999999999
Q ss_pred CCCC
Q psy13181 102 DGKR 105 (137)
Q Consensus 102 ~~~~ 105 (137)
.++.
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 8654
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=6.1e-15 Score=99.04 Aligned_cols=83 Identities=27% Similarity=0.440 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEE
Q psy13181 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99 (137)
Q Consensus 21 ~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~ 99 (137)
.....++|||+|||..+++++|+++|.++ .+.. .++.+..++.++++|||+|.+.++|.+|++|++ ..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g-~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGG-EEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCC-CEeCCeEEEEe
Confidence 34567899999999999999999999988 5444 234444567789999999999999999999999 99999999999
Q ss_pred ecCCCC
Q psy13181 100 IADGKR 105 (137)
Q Consensus 100 ~a~~~~ 105 (137)
++.++.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 998654
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=3e-14 Score=100.04 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEE
Q psy13181 22 TEPPYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRL 98 (137)
Q Consensus 22 ~~~~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v 98 (137)
..+.++|||+|||. .+++++|+++|++| .|..|.++.++ +++|||+|.+.++|.+|++ |++ ..|.|+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g-~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG-HKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTT-CBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCC-CeECCeEEEE
Confidence 45668999999999 99999999999999 99999998765 5699999999999999999 999 9999999999
Q ss_pred EecCCC
Q psy13181 99 DIADGK 104 (137)
Q Consensus 99 ~~a~~~ 104 (137)
.++.++
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 999865
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=2.8e-13 Score=84.60 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHhcCcCC-ceeEEEEeecCCC-CCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe
Q psy13181 23 EPPYTAFVGNLPN-----GITQGDVERFFPEQ-KLVSVRLVKDKET-DRFKGFCYVEFVDVENLRQALL-KDGRITVDGL 94 (137)
Q Consensus 23 ~~~~~l~v~nlp~-----~~~e~~l~~~f~~~-~i~~i~~~~~~~t-~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~ 94 (137)
.++++|+|.||.. +-++++|+++|++| .|..|.++.++.+ +.++|++||+|.+.++|.+|+. ||| ..++|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG-~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG-RYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT-CEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC-CEECCc
Confidence 4567999999962 23689999999999 9999999988653 5789999999999999999999 999 999999
Q ss_pred EEEEEecCC
Q psy13181 95 QVRLDIADG 103 (137)
Q Consensus 95 ~l~v~~a~~ 103 (137)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=3.6e-13 Score=96.87 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec-CeEEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRLD 99 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-g~~l~v~ 99 (137)
...++|||+|||..+++++|+++|++| .|..|.++.++ +++|||+|.+.++|.+|+. |++ ..|. |+.|+|.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQG-FKITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCC-cEeCCCCEEEEE
Confidence 356889999999999999999999999 99999988654 4799999999999999999 999 9998 9999999
Q ss_pred ecC
Q psy13181 100 IAD 102 (137)
Q Consensus 100 ~a~ 102 (137)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-12 Score=82.60 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCC-----------HHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCC
Q psy13181 22 TEPPYTAFVGNLPNGIT-----------QGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGR 88 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~-----------e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~ 88 (137)
..+.++|+|.||..... +++|+++|++| .|..|.+ .++. ++|+|||+|.+.++|.+|+. |++
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng- 86 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDG- 86 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTT-
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCC-
Confidence 34678999999944332 57999999999 9999955 5542 68999999999999999999 999
Q ss_pred eeecCeEEEEEecCCCCCC
Q psy13181 89 ITVDGLQVRLDIADGKRND 107 (137)
Q Consensus 89 ~~l~g~~l~v~~a~~~~~~ 107 (137)
..|+++.|.|.++.++...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp CEETTEECEEEECCSCCCS
T ss_pred CEECCcEEEEEEeCCCCCc
Confidence 9999999999999876543
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1e-13 Score=98.12 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCee
Q psy13181 22 TEPPYTAFVGNLPNGI---------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRIT 90 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~---------~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~ 90 (137)
....++|||+||+..+ +|++|+.+|++| .|..|.++.+ ++||||+|.+.++|+.|++ |++ ..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g-~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSN-QT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTT-CC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCC-CE
Confidence 4567899999999998 799999999999 9999998853 6799999999999999999 999 88
Q ss_pred e------------cCeEEEEEecCCCCC
Q psy13181 91 V------------DGLQVRLDIADGKRN 106 (137)
Q Consensus 91 l------------~g~~l~v~~a~~~~~ 106 (137)
| .|+.|.|.+|..++.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 8 899999999987654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=1e-13 Score=94.88 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=69.0
Q ss_pred CceEEEcCCCC-CCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEec
Q psy13181 25 PYTAFVGNLPN-GITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIA 101 (137)
Q Consensus 25 ~~~l~v~nlp~-~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a 101 (137)
.++|||+|||+ .+++++|+++|++| .|..|.++.++ +++|||+|.+.++|.+|+. |++ ..+.|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNG-HKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTT-CCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCC-CeecCeEEEEEEe
Confidence 47999999999 99999999999999 99999988764 5699999999999999999 999 9999999999999
Q ss_pred CCCC
Q psy13181 102 DGKR 105 (137)
Q Consensus 102 ~~~~ 105 (137)
..+.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8653
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=7.5e-13 Score=94.60 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=70.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
.......++|||+|||.++++++|+++|++| .|..|.+.++ +++|||+|.+.++|..|+. +++ ..|.++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g-~~i~g~~l 88 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDG-TILKSRPL 88 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTT-CEETTEEC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCC-cEECCcee
Confidence 3334566899999999999999999999999 9999988643 5799999999999999999 999 99999999
Q ss_pred EEEecCCC
Q psy13181 97 RLDIADGK 104 (137)
Q Consensus 97 ~v~~a~~~ 104 (137)
.|.++.+.
T Consensus 89 ~v~~a~~~ 96 (261)
T 3sde_A 89 RIRFATHG 96 (261)
T ss_dssp EEEECCCS
T ss_pred EeeecccC
Confidence 99998753
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.41 E-value=6.9e-13 Score=95.81 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=69.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEEEEEe
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDI 100 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l~v~~ 100 (137)
....++|||+|||..+++++|+++|+.| .|..|.++.++.+ ++++|||+|.+.++|.+|+.+++ ..|.++.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~-~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTH-KVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTT-CEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCC-cEeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999988754 47899999999999999999999 999999999998
Q ss_pred cCC
Q psy13181 101 ADG 103 (137)
Q Consensus 101 a~~ 103 (137)
+..
T Consensus 115 ~~~ 117 (292)
T 2ghp_A 115 LTE 117 (292)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=6.5e-14 Score=95.56 Aligned_cols=75 Identities=29% Similarity=0.559 Sum_probs=63.5
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-c-----------eeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeee
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-K-----------LVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 91 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~-----------i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l 91 (137)
..++|||+|||.++++++|+++|++| . +..+.+ +.++++|||+|.+.++|.+|+.|++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g-~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDG-IIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTT-EEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcC-CEE
Confidence 45799999999999999999999987 3 233333 3457899999999999999999999 999
Q ss_pred cCeEEEEEecCCCC
Q psy13181 92 DGLQVRLDIADGKR 105 (137)
Q Consensus 92 ~g~~l~v~~a~~~~ 105 (137)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999987654
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=1.4e-12 Score=93.24 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec---CeEEEE
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD---GLQVRL 98 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~---g~~l~v 98 (137)
...+|||+|||..+++++|+++|+.| .|..|.++.+ .++.++|+|||+|.+.++|.+|+. |++...+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35799999999999999999999999 9999999999 478999999999999999999999 84415555 899999
Q ss_pred EecCCCC
Q psy13181 99 DIADGKR 105 (137)
Q Consensus 99 ~~a~~~~ 105 (137)
.++.+..
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9998654
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=3.9e-13 Score=93.21 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=65.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ce--eEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCe----
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KL--VSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGL---- 94 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i--~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~---- 94 (137)
.+.++|||+|||+.+++++|+++|++| .| ..+.++.++ +..+++|||+|.+.++|.+||. ||+ ..|.+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng-~~~~g~~~~~ 197 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNH-YQMKNPNGPY 197 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTT-CEECCSSSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCC-CCccCCCCCc
Confidence 345789999999999999999999999 77 888888765 4456899999999999999999 999 999875
Q ss_pred EEEEEec
Q psy13181 95 QVRLDIA 101 (137)
Q Consensus 95 ~l~v~~a 101 (137)
++.|+++
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 5666654
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=1.5e-12 Score=88.98 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec-CeEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-g~~l~v 98 (137)
.+..+|||+|||..+++++|+++|++| .|..+.++.+ .+++|||+|.+.++|.+|+. |++ ..++ |+.|.|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g-~~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHN-HDLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTS-SCCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcC-CccCCCCeEEE
Confidence 347899999999999999999999998 6788887653 26799999999999999999 999 9999 999999
Q ss_pred EecCCC
Q psy13181 99 DIADGK 104 (137)
Q Consensus 99 ~~a~~~ 104 (137)
.+++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998764
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=3.8e-12 Score=89.27 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec-CeEEEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-GLQVRL 98 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-g~~l~v 98 (137)
.+..+|||+|||..+++++|+++|++| .|..+.++.+ .+++|||+|.+.++|.+|+. |++ ..+. ++.|.|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g-~~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHN-HDLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTT-CBSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCC-CccCCCCeEEE
Confidence 346899999999999999999999999 6788887542 25799999999999999999 999 9999 999999
Q ss_pred EecCCC
Q psy13181 99 DIADGK 104 (137)
Q Consensus 99 ~~a~~~ 104 (137)
.+++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 998864
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.35 E-value=3.5e-12 Score=85.04 Aligned_cols=75 Identities=29% Similarity=0.538 Sum_probs=63.4
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCC------------ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeee
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQ------------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITV 91 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~------------~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l 91 (137)
..++|||+|||.++++++|+++|++| .+..+.+. .++++|||+|.+.++|.+|+.+++ ..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~-~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDG-IIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTT-CEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCC-cEe
Confidence 45799999999999999999999987 23334332 347899999999999999999999 999
Q ss_pred cCeEEEEEecCCCC
Q psy13181 92 DGLQVRLDIADGKR 105 (137)
Q Consensus 92 ~g~~l~v~~a~~~~ 105 (137)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ 89 (172)
T ss_dssp TTEECEEECCSSCC
T ss_pred cCceeeecCCcccC
Confidence 99999999877553
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=4.1e-12 Score=79.22 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=67.5
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHhcCcCC-ceeEEEEeecCCC--CCeecEEEEEEcCHHHHHHHHH-hCCCe
Q psy13181 24 PPYTAFVGNL--PNGIT--------QGDVERFFPEQ-KLVSVRLVKDKET--DRFKGFCYVEFVDVENLRQALL-KDGRI 89 (137)
Q Consensus 24 ~~~~l~v~nl--p~~~~--------e~~l~~~f~~~-~i~~i~~~~~~~t--~~~~g~~fv~f~~~~~a~~al~-l~~~~ 89 (137)
+++.|.|.|+ |.++. +++|++.|++| .|..|.+++++.+ +..+|++||+|.+.++|.+|+. ||| .
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG-~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG-R 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT-C
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC-C
Confidence 5678899997 33443 36899999999 9999999888754 3578999999999999999999 999 9
Q ss_pred eecCeEEEEEecCC
Q psy13181 90 TVDGLQVRLDIADG 103 (137)
Q Consensus 90 ~l~g~~l~v~~a~~ 103 (137)
.++|+.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999764
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=6.9e-12 Score=79.79 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=67.9
Q ss_pred CCceEEEcCCC--CCC---CHHHHHhcCcCC-ceeEEEEeecCC----CCCeecEEEEEEcCHHHHHHHHH-hCCCeeec
Q psy13181 24 PPYTAFVGNLP--NGI---TQGDVERFFPEQ-KLVSVRLVKDKE----TDRFKGFCYVEFVDVENLRQALL-KDGRITVD 92 (137)
Q Consensus 24 ~~~~l~v~nlp--~~~---~e~~l~~~f~~~-~i~~i~~~~~~~----t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~ 92 (137)
++++|+|.|+- .++ .+++|++.|++| .|..|.+++++. ++..+|++||+|.+.++|.+|+. ||| ..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG-r~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG-RWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT-CEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC-CEEC
Confidence 56789999983 223 358999999999 999999998864 35678999999999999999999 999 9999
Q ss_pred CeEEEEEecCC
Q psy13181 93 GLQVRLDIADG 103 (137)
Q Consensus 93 g~~l~v~~a~~ 103 (137)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1e-12 Score=81.82 Aligned_cols=70 Identities=13% Similarity=0.340 Sum_probs=60.1
Q ss_pred EcCCCCCCCHHHHHhcC------------cCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 30 VGNLPNGITQGDVERFF------------PEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 30 v~nlp~~~~e~~l~~~f------------~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
+.+|+..+++++|++.| ++| .|..|.++++.. +.++|+|||+|.+.++|.+|+. ||| ..++|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng-~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNN-RWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTT-CEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCC-CEECCEE
Confidence 45566667777776665 999 999999998765 6889999999999999999999 999 9999999
Q ss_pred EEEEec
Q psy13181 96 VRLDIA 101 (137)
Q Consensus 96 l~v~~a 101 (137)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-10 Score=70.06 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=61.2
Q ss_pred CceEEEcCCC-------CCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 25 PYTAFVGNLP-------NGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 25 ~~~l~v~nlp-------~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
..+|.|.-.. ..+++++|+++|++| .|..|.++ +.++|||||+|.+.++|+.|+. +++ +.+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~~g~~ 81 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---LVDNP 81 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---CSSSB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---CCCCe
Confidence 4566665433 568999999999999 99999887 3568899999999999999999 655 46899
Q ss_pred EEEEecCCCCCC
Q psy13181 96 VRLDIADGKRND 107 (137)
Q Consensus 96 l~v~~a~~~~~~ 107 (137)
|.|.++.++...
T Consensus 82 l~V~~a~~~~~~ 93 (100)
T 2d9o_A 82 LKISWLEGQPQD 93 (100)
T ss_dssp CEEECSSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.20 E-value=4.4e-11 Score=88.71 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=63.1
Q ss_pred CCCCCCCceEEEcC--CCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeec--
Q psy13181 19 TLPTEPPYTAFVGN--LPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVD-- 92 (137)
Q Consensus 19 ~~~~~~~~~l~v~n--lp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~-- 92 (137)
.....++.+|||+| |+..++|++|+++|++| .|..|.+.. .++||||+|.+.++|++|++ ||| ..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG-~~~~~~ 84 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNG-KEVVDD 84 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTT-CEEECT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCC-Cccccc
Confidence 33456778999999 57899999999999999 998887653 36799999999999999999 999 7663
Q ss_pred -Ce--EEEEEecC
Q psy13181 93 -GL--QVRLDIAD 102 (137)
Q Consensus 93 -g~--~l~v~~a~ 102 (137)
|+ .|.|.++.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 33 57777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=6.6e-10 Score=70.14 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=62.8
Q ss_pred CCCCceEEEcCCCCCC----------CHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCe
Q psy13181 22 TEPPYTAFVGNLPNGI----------TQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRI 89 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~----------~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~ 89 (137)
..+++.|.|.|+=..- .+++|++.|++| .|..|.+.++. .+|++||.|.+.++|.+|+. ||| .
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG-~ 78 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHG-R 78 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTT-C
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCC-C
Confidence 3456788888873221 125789999999 99999886553 37899999999999999999 999 9
Q ss_pred eecCeEEEEEecCC
Q psy13181 90 TVDGLQVRLDIADG 103 (137)
Q Consensus 90 ~l~g~~l~v~~a~~ 103 (137)
.++|+.|.|.++..
T Consensus 79 ~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 79 WFAGKMITAAYVPL 92 (114)
T ss_dssp EETTEECEEEEECH
T ss_pred EECCEEEEEEEEcH
Confidence 99999999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.3e-09 Score=69.37 Aligned_cols=79 Identities=9% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcC-HHHHHHHHH-hC--CCeeec
Q psy13181 19 TLPTEPPYTAFVGNLPNG-ITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-VENLRQALL-KD--GRITVD 92 (137)
Q Consensus 19 ~~~~~~~~~l~v~nlp~~-~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~-~~~a~~al~-l~--~~~~l~ 92 (137)
.........|+|+||+.. +++++|+++|++| .|.+|.+..+.. .|||.|.+ ..+|..++. ++ + +.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~-~~i~ 84 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGN-LQLR 84 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSC-BCTT
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCC-cEEe
Confidence 344567789999999999 9999999999999 999999988765 59999999 889999998 74 5 8999
Q ss_pred CeEEEEEecCCC
Q psy13181 93 GLQVRLDIADGK 104 (137)
Q Consensus 93 g~~l~v~~a~~~ 104 (137)
+..+.++....+
T Consensus 85 g~~~~~evL~Ge 96 (121)
T 1owx_A 85 NKEVTWEVLEGE 96 (121)
T ss_dssp SSSEEEEECCHH
T ss_pred CcEEEEEECCCH
Confidence 998998876643
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2.6e-09 Score=64.30 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=59.9
Q ss_pred CCceEEEcCCC----CCCCH----HHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCe
Q psy13181 24 PPYTAFVGNLP----NGITQ----GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGL 94 (137)
Q Consensus 24 ~~~~l~v~nlp----~~~~e----~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~ 94 (137)
+..+|+|.-.+ .++.. .+|.+.|.+| .+..++++.++ +||+|.+.++|.+|+.|+| ..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG-~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNG-KELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTT-CEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCC-eEeCCe
Confidence 45678887665 23333 5788889999 89999998764 8999999999999999999 999999
Q ss_pred EEEEEecCCC
Q psy13181 95 QVRLDIADGK 104 (137)
Q Consensus 95 ~l~v~~a~~~ 104 (137)
.|+|.++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998764
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=3.2e-08 Score=59.87 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCCceEEEcCCCCC-----C-CH---HHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeec
Q psy13181 23 EPPYTAFVGNLPNG-----I-TQ---GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVD 92 (137)
Q Consensus 23 ~~~~~l~v~nlp~~-----~-~e---~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~ 92 (137)
++..+|+|.-++.. + ++ .+|.+.|.+| .+..++++.++ +||+|.+.++|.+||.|++ ..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG-~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDG-MKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGG-SEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCC-eeeC
Confidence 45578999877642 3 32 4678888888 88888888763 9999999999999999999 9999
Q ss_pred CeEEEEEecC
Q psy13181 93 GLQVRLDIAD 102 (137)
Q Consensus 93 g~~l~v~~a~ 102 (137)
|+.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.59 E-value=1.6e-07 Score=65.30 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCHHHHHhcCcCC-ceeEEEEeecCC----CCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 37 ITQGDVERFFPEQ-KLVSVRLVKDKE----TDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 37 ~~e~~l~~~f~~~-~i~~i~~~~~~~----t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
-.+++|...|++| .|..+.++.+.. ++..+|++||+|.+.++|.+|+. |+| ..++|+.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g-r~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG-RWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT-CBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC-ceECCeEEEEEEcC
Confidence 3457899999999 999999886543 45889999999999999999999 999 99999999999975
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=5.1e-06 Score=51.44 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=60.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC------ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQ 95 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~------~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~ 95 (137)
...++|-+.+||..++...|+.++.++ .+..|.+..|.. -|+|+|.+...|-+|.- |+| ..|.++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G-~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNG-SQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSS-EEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCC-eeecCeE
Confidence 346889999999999999999988765 477887876654 79999999988888876 999 9999999
Q ss_pred EEEEe
Q psy13181 96 VRLDI 100 (137)
Q Consensus 96 l~v~~ 100 (137)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 98863
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00035 Score=42.70 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=58.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcC----C--ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecCeEE
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPE----Q--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQV 96 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~----~--~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g~~l 96 (137)
....+|.|.|||+.++++.|.-+|+. . .+..+.... ..|+|+|.+.+.+++.|+... +.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~-H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD-HELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC-CBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc-ceecCeEE
Confidence 34579999999999999999999976 2 566655432 379999999999999988655 89999999
Q ss_pred EEEecCCC
Q psy13181 97 RLDIADGK 104 (137)
Q Consensus 97 ~v~~a~~~ 104 (137)
.|....++
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99876544
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.74 E-value=0.00036 Score=41.86 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=53.7
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCC--eecEEEEEEcCHHHHHHHHH-hCCCeeecC
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDR--FKGFCYVEFVDVENLRQALL-KDGRITVDG 93 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~--~~g~~fv~f~~~~~a~~al~-l~~~~~l~g 93 (137)
.+|.|++||+.++|+++.+.+... .+....++..+.+.+ ...-|+|.|.+.+++....+ ++| ..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g-~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG-YVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT-CEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC-cEEEc
Confidence 478999999999999999999988 777777666544332 23568999999999999999 999 66543
No 212
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.64 E-value=0.00033 Score=42.45 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=55.4
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCC--eecEEEEEEcCHHHHHHHHH-hCCCeeecC-----eE
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDR--FKGFCYVEFVDVENLRQALL-KDGRITVDG-----LQ 95 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~--~~g~~fv~f~~~~~a~~al~-l~~~~~l~g-----~~ 95 (137)
.-+|.|+.||+.+||+++.+.+... .+.+..++....+.+ ...-|+|.|.+.+++....+ ++| ..+.+ .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g-~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG-YIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT-EEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC-cEEEeCCCCEee
Confidence 4579999999999999999999887 655444433332222 12458999999999999999 999 66643 33
Q ss_pred EEEEecC
Q psy13181 96 VRLDIAD 102 (137)
Q Consensus 96 l~v~~a~ 102 (137)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4455553
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.63 E-value=0.00024 Score=43.02 Aligned_cols=55 Identities=16% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-h
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-K 85 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l 85 (137)
...+.++| .+|.++...||.++|+.|.-..|.++-| | .|||.|.+++.|..++. +
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD--T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD--T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET--T-----EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC--C-----eEEEEecCHHHHHHHHHhc
Confidence 45566777 9999999999999999994344556654 3 79999999999999988 6
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00027 Score=42.91 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD 86 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~ 86 (137)
..+.++| .+|.++...||.++|+.|+-..|.++-| | .|||.|.+++.|..++. +.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 3455666 9999999999999999995556777755 3 79999999999998888 63
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.00 E-value=0.0021 Score=39.35 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=57.3
Q ss_pred CCceEEEcCCCCCC-CH----HHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEE
Q psy13181 24 PPYTAFVGNLPNGI-TQ----GDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQV 96 (137)
Q Consensus 24 ~~~~l~v~nlp~~~-~e----~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l 96 (137)
-+.+|+|-||+.++ .. +.++++|..+ .+....+++. -.-..|.|.+.++|.+|-. ||+ ..+.|+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~-~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHK-TEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTT-SEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhcc-ceecCcee
Confidence 35689999998765 22 4667888888 6665555533 2257899999999999988 999 99999999
Q ss_pred EEEecCCC
Q psy13181 97 RLDIADGK 104 (137)
Q Consensus 97 ~v~~a~~~ 104 (137)
+|-++.+.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99998744
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.012 Score=36.81 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=56.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHHhCCCeeecC-eEEEEEe
Q psy13181 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDG-LQVRLDI 100 (137)
Q Consensus 23 ~~~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~l~~~~~l~g-~~l~v~~ 100 (137)
....-|.|-++|+.. ...|...|++| .|.+.... ....+.+|.|.+..+|++||..|+ ..|++ ..|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG-~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDG-RIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTT-CEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCC-eEecCCEEEEEEE
Confidence 345788899999986 45577788899 88877652 123499999999999999999999 88874 6677776
Q ss_pred cC
Q psy13181 101 AD 102 (137)
Q Consensus 101 a~ 102 (137)
..
T Consensus 94 ~~ 95 (119)
T 1wwh_A 94 CI 95 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.53 E-value=0.0042 Score=47.70 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=40.7
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~ 84 (137)
.++|+|. .|..+++.+|.++|++| .|..+.+-.++. -|+.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999 999987765543 499999999999887765
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.63 E-value=0.036 Score=35.25 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=52.9
Q ss_pred CceEEEcCCCCCCCHHHHHhcCcCC-ceeE-EEEee------------cCCCC-CeecEEEEEEcCHHHHHHHHHhCCCe
Q psy13181 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVS-VRLVK------------DKETD-RFKGFCYVEFVDVENLRQALLKDGRI 89 (137)
Q Consensus 25 ~~~l~v~nlp~~~~e~~l~~~f~~~-~i~~-i~~~~------------~~~t~-~~~g~~fv~f~~~~~a~~al~l~~~~ 89 (137)
...|.|-++|+..+.. +.+.|++| .|.+ ..... .+... ....+..|.|++..+|.+||..+| .
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG-~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG-A 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT-C
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC-e
Confidence 3567787887776655 66677888 6654 11110 00000 124688999999999999999999 9
Q ss_pred eecCeEEEEEecCC
Q psy13181 90 TVDGLQVRLDIADG 103 (137)
Q Consensus 90 ~l~g~~l~v~~a~~ 103 (137)
.|+|..|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887653
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.14 E-value=0.068 Score=34.38 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.5
Q ss_pred EEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCC
Q psy13181 53 SVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDG 87 (137)
Q Consensus 53 ~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~ 87 (137)
.+.++++.. +.+|++||+|.+.++|++|+. +++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcc
Confidence 345666654 578999999999999999997 664
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.53 E-value=0.049 Score=34.87 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCeecEEEEEEcCHHHHHHHHH-h-CCCeeecCeEEEEEecCCC
Q psy13181 63 DRFKGFCYVEFVDVENLRQALL-K-DGRITVDGLQVRLDIADGK 104 (137)
Q Consensus 63 ~~~~g~~fv~f~~~~~a~~al~-l-~~~~~l~g~~l~v~~a~~~ 104 (137)
.+..|+++++|.+.++|++|+. + ++ ..++| .+.+.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng-~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYAND-NGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHH-HTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcC-CCCCC-ceecccccCc
Confidence 4668899999999999999999 9 99 99999 9999987754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.67 E-value=0.94 Score=35.13 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=43.2
Q ss_pred CCceEEEcCCCCCCCHHHHHhcCcCCceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hC
Q psy13181 24 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD 86 (137)
Q Consensus 24 ~~~~l~v~nlp~~~~e~~l~~~f~~~~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~ 86 (137)
.+..++|+ +|..|...+|.+.|+.|.-.+|.++-+ | .+||.|.+.+.+..++. +.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd--t-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS--S-----EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC--C-----eEEEEECCHHHHHHHHHHHH
Confidence 44566666 999999999999999884445656543 2 79999999999999988 64
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=64.66 E-value=27 Score=23.01 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=39.7
Q ss_pred CceEEEcCCCC-C--------CCHHHHHhcC--cCCceeEEEEeecCCCCCeecEEEEEEc-CHHHHHHHHHhC
Q psy13181 25 PYTAFVGNLPN-G--------ITQGDVERFF--PEQKLVSVRLVKDKETDRFKGFCYVEFV-DVENLRQALLKD 86 (137)
Q Consensus 25 ~~~l~v~nlp~-~--------~~e~~l~~~f--~~~~i~~i~~~~~~~t~~~~g~~fv~f~-~~~~a~~al~l~ 86 (137)
++.+.|.|+|. . .+...|++.| ..|....+..+..+. -+.++++|.|. +..-...|+.++
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSS--BEEEEEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCC--CCceeEEEEecCChHHHHHHHHHH
Confidence 35778888887 2 3336788866 888444555555543 47889999997 456666666543
No 223
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=31.16 E-value=65 Score=19.25 Aligned_cols=65 Identities=8% Similarity=0.121 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHhcCcC-C-ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecCCCCC
Q psy13181 32 NLPNGITQGDVERFFPE-Q-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIADGKRN 106 (137)
Q Consensus 32 nlp~~~~e~~l~~~f~~-~-~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~~~~~ 106 (137)
.++..+.-++|..-+.. | ...++... +. ...|-..+.++..+|++ |+- .-..+.++|-+..++..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDr--ss~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDR--SIHMKSLKILLVINGST 90 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHH--CSSCCSEEEEEEECCCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHcc--CCcccceEEEEecCCCC
Confidence 46788888888766543 3 55555443 21 46788899999999999 764 33344456655555443
No 224
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.22 E-value=37 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=20.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHhcCc
Q psy13181 22 TEPPYTAFVGNLPNGITQGDVERFFP 47 (137)
Q Consensus 22 ~~~~~~l~v~nlp~~~~e~~l~~~f~ 47 (137)
+....+|.|-.-|..++++++..++.
T Consensus 26 ~~e~~rl~IP~DP~~WS~~~V~~WL~ 51 (128)
T 2ytu_A 26 TTNERRVIVPADPTLWTQEHVRQWLE 51 (128)
T ss_dssp CCCSSCCSCCSCGGGCCTTHHHHHHH
T ss_pred hhhhhhccCCcchhhCCHHHHHHHHH
Confidence 34456788888899999999999874
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.20 E-value=90 Score=16.79 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCCCHHHHHhcCcCC------ceeEEEEeecCCCCCeecEEEEEEcCHHHHHHHHH-hCCCeeecCeEEEEEecC
Q psy13181 35 NGITQGDVERFFPEQ------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KDGRITVDGLQVRLDIAD 102 (137)
Q Consensus 35 ~~~~e~~l~~~f~~~------~i~~i~~~~~~~t~~~~g~~fv~f~~~~~a~~al~-l~~~~~l~g~~l~v~~a~ 102 (137)
..+...+|..++..- .|-.|.+.. .+.||+.... .+..++. |.. ..+.++.+.|+.+.
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~-~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKN-TTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTT-CCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhcc-ccCcCceEEEEECC
Confidence 345556676666432 455665532 2788887754 4566667 888 88889998888754
No 226
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=24.15 E-value=16 Score=26.82 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=4.4
Q ss_pred CCHHHHHhc
Q psy13181 37 ITQGDVERF 45 (137)
Q Consensus 37 ~~e~~l~~~ 45 (137)
+++++|...
T Consensus 229 vt~~~l~~i 237 (358)
T 2pk2_A 229 VTLELLDEL 237 (358)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 455555444
No 227
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.49 E-value=20 Score=25.24 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=25.0
Q ss_pred ceEEEcCCCCCCCHHHHHhcCcCC-ceeEEEEee
Q psy13181 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVK 58 (137)
Q Consensus 26 ~~l~v~nlp~~~~e~~l~~~f~~~-~i~~i~~~~ 58 (137)
..+.|+|||..++..-|.+++... .+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 357899999999999999998755 555554443
Done!