Your job contains 1 sequence.
>psy13181
MADYSYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDK
ETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGG
GSGGMGGNKYNQHQDKG
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13181
(137 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0262734 - symbol:Rbp2 "RNA-binding protein 2" spec... 300 3.7e-29 2
ZFIN|ZDB-GENE-010328-19 - symbol:eif4h "eukaryotic transl... 298 1.9e-26 1
UNIPROTKB|E1BZH4 - symbol:LOC100859865 "Uncharacterized p... 297 2.5e-26 1
UNIPROTKB|F1NYA2 - symbol:LOC100859865 "Uncharacterized p... 297 2.5e-26 1
UNIPROTKB|A7MBG9 - symbol:WBSCR1 "WBSCR1 protein" species... 297 2.5e-26 1
UNIPROTKB|Q1JPH6 - symbol:EIF4H "Eukaryotic translation i... 297 2.5e-26 1
UNIPROTKB|E2RQG8 - symbol:EIF4H "Uncharacterized protein"... 297 2.5e-26 1
UNIPROTKB|Q15056 - symbol:EIF4H "Eukaryotic translation i... 297 2.5e-26 1
UNIPROTKB|I3L594 - symbol:EIF4H "Uncharacterized protein"... 297 2.5e-26 1
UNIPROTKB|I3LRD5 - symbol:EIF4H "Uncharacterized protein"... 297 2.5e-26 1
MGI|MGI:1341822 - symbol:Eif4h "eukaryotic translation in... 297 2.5e-26 1
RGD|1359222 - symbol:Eif4h "eukaryotic translation initia... 297 2.5e-26 1
UNIPROTKB|Q5XI72 - symbol:Eif4h "Eukaryotic translation i... 297 2.5e-26 1
FB|FBgn0039797 - symbol:CG1340 species:7227 "Drosophila m... 243 5.1e-20 1
ASPGD|ASPL0000069068 - symbol:AN7350 species:162425 "Emer... 184 1.0e-14 2
UNIPROTKB|G4N5M5 - symbol:MGG_05264 "Translation initiati... 173 2.5e-13 2
ZFIN|ZDB-GENE-060629-1 - symbol:eif4ba "eukaryotic transl... 179 8.9e-13 1
UNIPROTKB|F8VSC7 - symbol:EIF4B "Eukaryotic translation i... 169 9.1e-13 1
UNIPROTKB|F8W0K0 - symbol:EIF4B "Eukaryotic translation i... 169 9.1e-13 1
POMBASE|SPBC18H10.04c - symbol:sce3 "translation initiati... 175 9.5e-13 1
UNIPROTKB|F8VP89 - symbol:EIF4B "Eukaryotic translation i... 169 1.2e-12 1
ZFIN|ZDB-GENE-030131-8563 - symbol:eif4bb "eukaryotic tra... 164 1.6e-12 2
UNIPROTKB|F8VYE9 - symbol:EIF4B "Eukaryotic translation i... 164 3.1e-12 1
MGI|MGI:95304 - symbol:Eif4b "eukaryotic translation init... 172 5.0e-12 1
RGD|1306479 - symbol:Eif4b "eukaryotic translation initia... 172 5.0e-12 1
UNIPROTKB|F1MYS7 - symbol:EIF4B "Uncharacterized protein"... 170 8.1e-12 1
UNIPROTKB|E2RKS4 - symbol:EIF4B "Uncharacterized protein"... 170 8.2e-12 1
UNIPROTKB|P23588 - symbol:EIF4B "Eukaryotic translation i... 169 1.0e-11 1
UNIPROTKB|E7EX17 - symbol:EIF4B "Eukaryotic translation i... 169 1.1e-11 1
UNIPROTKB|F8VX11 - symbol:EIF4B "Eukaryotic translation i... 163 1.6e-11 1
UNIPROTKB|F8VRU1 - symbol:EIF4B "Eukaryotic translation i... 149 1.2e-10 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 149 4.6e-10 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 151 7.0e-10 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 135 3.6e-09 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 131 9.7e-09 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 9.7e-09 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 131 1.0e-08 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 130 1.2e-08 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 131 1.3e-08 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 129 1.6e-08 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 129 1.6e-08 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 129 1.6e-08 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 131 3.5e-08 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 125 4.2e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 125 4.2e-08 1
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 134 6.3e-08 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 131 6.9e-08 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 121 1.1e-07 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 121 1.1e-07 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 121 1.1e-07 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 121 1.1e-07 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 121 1.1e-07 1
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 130 1.4e-07 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 129 1.5e-07 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 124 1.5e-07 1
DICTYBASE|DDB_G0284167 - symbol:DDB_G0284167 "RNA-binding... 124 2.0e-07 1
FB|FBgn0020660 - symbol:eIF-4B "Eukaryotic initiation fac... 127 2.2e-07 1
UNIPROTKB|F1P133 - symbol:F1P133 "Uncharacterized protein... 118 2.3e-07 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 123 2.5e-07 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 121 4.7e-07 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 115 4.8e-07 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 115 4.8e-07 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 124 5.3e-07 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 114 6.1e-07 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 114 6.1e-07 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 113 7.8e-07 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 113 7.8e-07 1
ASPGD|ASPL0000074275 - symbol:AN4665 species:162425 "Emer... 118 8.2e-07 1
MGI|MGI:1919414 - symbol:Rbmx2 "RNA binding motif protein... 119 8.9e-07 1
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 117 1.8e-06 1
UNIPROTKB|Q9Y388 - symbol:RBMX2 "RNA-binding motif protei... 116 1.9e-06 1
UNIPROTKB|F1PRG0 - symbol:RBMX2 "Uncharacterized protein"... 116 1.9e-06 1
UNIPROTKB|F1LMQ9 - symbol:Rbmx2 "RNA-binding motif protei... 116 1.9e-06 1
RGD|1562693 - symbol:Rbmx2 "RNA binding motif protein, X-... 116 1.9e-06 1
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37... 104 1.9e-06 2
UNIPROTKB|G5E5I0 - symbol:RBMX2 "Uncharacterized protein"... 116 2.0e-06 1
UNIPROTKB|J9P250 - symbol:RBMX2 "Uncharacterized protein"... 116 2.1e-06 1
UNIPROTKB|G3MWK4 - symbol:SRSF12 "Uncharacterized protein... 112 3.3e-06 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 107 3.4e-06 1
UNIPROTKB|Q8WXF0 - symbol:SRSF12 "Serine/arginine-rich sp... 111 4.2e-06 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 106 4.3e-06 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 114 4.5e-06 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 114 4.5e-06 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 112 4.5e-06 1
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 116 5.0e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 105 5.5e-06 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 110 6.8e-06 1
UNIPROTKB|G3X6K3 - symbol:LOC534630 "Uncharacterized prot... 111 6.8e-06 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 104 7.0e-06 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 104 7.0e-06 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 104 7.0e-06 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 104 7.0e-06 1
WARNING: Descriptions of 227 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0262734 [details] [associations]
symbol:Rbp2 "RNA-binding protein 2" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005875 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003743
GeneTree:ENSGT00530000063406 CTD:5948 FlyBase:FBgn0262734
ChiTaRS:RBP2 EMBL:BT088437 RefSeq:NP_996487.1 UniGene:Dm.18619
SMR:Q7KUX7 STRING:Q7KUX7 EnsemblMetazoa:FBtr0074281 GeneID:49809
KEGG:dme:Dmel_CG4429 UCSC:CG4429-RC InParanoid:Q7KUX7
GenomeRNAi:49809 NextBio:839902 Uniprot:Q7KUX7
Length = 358
Score = 300 (110.7 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 63/112 (56%), Positives = 79/112 (70%)
Query: 7 GGYPE-RYG----RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKE 61
GGY R G R K LPTEPP+ AFVGNLP G+ QGDV + F + ++ VRLVKD+E
Sbjct: 5 GGYEHARSGFGGDRASKQLPTEPPFIAFVGNLPQGLVQGDVIKIFQDFEVKYVRLVKDRE 64
Query: 62 TDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQ--VRLDIADGKRNDNKGG 111
TD+FKGFCYVEF ++NL +AL DGRI +D L +R+DIAD ++ND GG
Sbjct: 65 TDQFKGFCYVEFETLDNLERALECDGRIKLDDLSAPLRIDIADRRKNDRPGG 116
Score = 39 (18.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 102 DGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQDK 136
D R +G + N Q+R N +N+H+D+
Sbjct: 232 DRDRGQREGSYGN-QSRDGDRY----NNFNRHRDR 261
>ZFIN|ZDB-GENE-010328-19 [details] [associations]
symbol:eif4h "eukaryotic translation initiation
factor 4h" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-010328-19 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OrthoDB:EOG46DM3S eggNOG:NOG240551
EMBL:BC065640 IPI:IPI00481882 UniGene:Dr.76638
ProteinModelPortal:Q6P0F5 SMR:Q6P0F5 STRING:Q6P0F5 PRIDE:Q6P0F5
InParanoid:Q6P0F5 NextBio:20816803 ArrayExpress:Q6P0F5 Bgee:Q6P0F5
Uniprot:Q6P0F5
Length = 263
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 59/105 (56%), Positives = 76/105 (72%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFK 66
GG P R QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DKETD+FK
Sbjct: 26 GGGPSG-PRKQKELPTEPPYTAYVGNLPFNTVQGDIDAIFRDLSVRSVRLVRDKETDKFK 84
Query: 67 GFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
GFCYVEF D+E+L++AL DG + D +R+DIA+G+R + GG
Sbjct: 85 GFCYVEFDDLESLKEALTYDGALLGDR-SLRVDIAEGRRQERGGG 128
>UNIPROTKB|E1BZH4 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
OMA:PRTVSEP EMBL:AADN02026007 IPI:IPI00604206 RefSeq:XP_003642445.1
Ensembl:ENSGALT00000001998 GeneID:100859865 KEGG:gga:100859865
Uniprot:E1BZH4
Length = 254
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 61/110 (55%), Positives = 79/110 (71%)
Query: 7 GGYPERYG----RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET 62
GG R G R QK LPTEPP+TA+VGNLP QGD++ F + + SVRLV+DKET
Sbjct: 17 GGRGSRGGGLGSRKQKELPTEPPFTAYVGNLPFNTVQGDIDAIFKDLSVRSVRLVRDKET 76
Query: 63 DRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
D+FKGFCYVEF +VE+L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 77 DKFKGFCYVEFDEVESLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 124
>UNIPROTKB|F1NYA2 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
Length = 146
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 61/110 (55%), Positives = 79/110 (71%)
Query: 7 GGYPERYG----RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET 62
GG R G R QK LPTEPP+TA+VGNLP QGD++ F + + SVRLV+DKET
Sbjct: 17 GGRGSRGGGLGSRKQKELPTEPPFTAYVGNLPFNTVQGDIDAIFKDLSVRSVRLVRDKET 76
Query: 63 DRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
D+FKGFCYVEF +VE+L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 77 DKFKGFCYVEFDEVESLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 124
>UNIPROTKB|A7MBG9 [details] [associations]
symbol:WBSCR1 "WBSCR1 protein" species:9913 "Bos taurus"
[GO:0048589 "developmental growth" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063406 IPI:IPI00691331
UniGene:Bt.57927 UniGene:Bt.89526 HOVERGEN:HBG018193
EMBL:DAAA02058194 EMBL:BC151552 SMR:A7MBG9
Ensembl:ENSBTAT00000064159 OMA:PNMDFRE Uniprot:A7MBG9
Length = 222
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>UNIPROTKB|Q1JPH6 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:BT025377 EMBL:BT030478 IPI:IPI00691331 RefSeq:NP_001069220.1
UniGene:Bt.57927 UniGene:Bt.89526 ProteinModelPortal:Q1JPH6
SMR:Q1JPH6 PRIDE:Q1JPH6 GeneID:517409 KEGG:bta:517409 CTD:7458
HOVERGEN:HBG018193 NextBio:20872431 ArrayExpress:Q1JPH6
Uniprot:Q1JPH6
Length = 228
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>UNIPROTKB|E2RQG8 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:PNMDFRE EMBL:AAEX03004233
Ensembl:ENSCAFT00000019083 Uniprot:E2RQG8
Length = 251
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 27 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 83
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 84 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 129
>UNIPROTKB|Q15056 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=TAS] [GO:0016281 "eukaryotic translation
initiation factor 4F complex" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0048471 GO:GO:0019048 GO:GO:0000166
GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:CH471200 Orphanet:904 eggNOG:COG0724 Reactome:REACT_1762
CTD:7458 HOVERGEN:HBG018193 EMBL:AF045555 EMBL:D26068 EMBL:AK290676
EMBL:BC010021 EMBL:BC021214 EMBL:BC066928 IPI:IPI00014263
IPI:IPI00375127 RefSeq:NP_071496.1 RefSeq:NP_114381.1
UniGene:Hs.520943 ProteinModelPortal:Q15056 SMR:Q15056
IntAct:Q15056 STRING:Q15056 PhosphoSite:Q15056 DMDM:18276665
PaxDb:Q15056 PRIDE:Q15056 DNASU:7458 Ensembl:ENST00000265753
Ensembl:ENST00000353999 Ensembl:ENST00000575843
Ensembl:ENST00000575925 GeneID:7458 KEGG:hsa:7458 UCSC:uc003uad.1
UCSC:uc003uae.1 GeneCards:GC07P073588 HGNC:HGNC:12741 HPA:HPA030542
MIM:603431 neXtProt:NX_Q15056 PharmGKB:PA162384997
HOGENOM:HOG000013063 InParanoid:Q15056 OMA:PRTVSEP
OrthoDB:EOG46DM3S PhylomeDB:Q15056 ChEMBL:CHEMBL1293274
ChiTaRS:EIF4H GenomeRNAi:7458 NextBio:29206 ArrayExpress:Q15056
Bgee:Q15056 CleanEx:HS_EIF4H Genevestigator:Q15056 Uniprot:Q15056
Length = 248
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>UNIPROTKB|I3L594 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 CTD:7458 EMBL:FP340223
RefSeq:NP_001230377.1 UniGene:Ssc.54702 Ensembl:ENSSSCT00000029656
GeneID:100627717 KEGG:ssc:100627717 Uniprot:I3L594
Length = 228
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>UNIPROTKB|I3LRD5 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048589 "developmental growth" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
CTD:7458 OMA:PRTVSEP EMBL:FP340223 UniGene:Ssc.54702
GeneID:100627717 KEGG:ssc:100627717 RefSeq:NP_001230376.1
Ensembl:ENSSSCT00000024462 Uniprot:I3LRD5
Length = 248
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>MGI|MGI:1341822 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0019953 "sexual
reproduction" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1341822 GO:GO:0048471
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048589 GO:GO:0003743
GO:GO:0019953 eggNOG:COG0724 EMBL:AF289664
GeneTree:ENSGT00530000063406 CTD:7458 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OMA:PRTVSEP OrthoDB:EOG46DM3S ChiTaRS:EIF4H
EMBL:AF139987 EMBL:BC014796 IPI:IPI00124742 IPI:IPI00222560
RefSeq:NP_291039.1 UniGene:Mm.27955 PDB:2DNG PDBsum:2DNG
ProteinModelPortal:Q9WUK2 SMR:Q9WUK2 STRING:Q9WUK2
PhosphoSite:Q9WUK2 PaxDb:Q9WUK2 PRIDE:Q9WUK2
Ensembl:ENSMUST00000036125 GeneID:22384 KEGG:mmu:22384
InParanoid:Q9WUK2 EvolutionaryTrace:Q9WUK2 NextBio:302749
PMAP-CutDB:Q9WUK2 Bgee:Q9WUK2 CleanEx:MM_EIF4H
Genevestigator:Q9WUK2 GermOnline:ENSMUSG00000040731 Uniprot:Q9WUK2
Length = 248
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>RGD|1359222 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>UNIPROTKB|Q5XI72 [details] [associations]
symbol:Eif4h "Eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0048589 "developmental growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/108 (54%), Positives = 80/108 (74%)
Query: 5 SYGGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDR 64
S GG+ R +QK LPTEPPYTA+VGNLP QGD++ F + + SVRLV+DK+TD+
Sbjct: 24 SAGGHGSR---SQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDK 80
Query: 65 FKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
FKGFCYVEF +V++L++AL DG + D +R+DIA+G++ D KGGF
Sbjct: 81 FKGFCYVEFDEVDSLKEALTYDGALLGDR-SLRVDIAEGRKQD-KGGF 126
>FB|FBgn0039797 [details] [associations]
symbol:CG1340 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0005829 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0003743 GeneTree:ENSGT00530000063406
HSSP:P33240 FlyBase:FBgn0039797 EMBL:BT003308 RefSeq:NP_651820.1
UniGene:Dm.11867 SMR:Q9VA45 MINT:MINT-1742166 STRING:Q9VA45
EnsemblMetazoa:FBtr0085699 GeneID:43645 KEGG:dme:Dmel_CG1340
UCSC:CG1340-RA InParanoid:Q9VA45 OMA:EFKGYGY GenomeRNAi:43645
NextBio:835038 Uniprot:Q9VA45
Length = 459
Score = 243 (90.6 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 48/96 (50%), Positives = 68/96 (70%)
Query: 17 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDV 76
Q+ +PTEPP+ A+VGNLP G+ QGDV + F + ++ +VRL+KD+ETD FKG+ YVEF +
Sbjct: 54 QRQVPTEPPFIAYVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETDEFKGYGYVEFETL 113
Query: 77 ENLRQALLKDGRITVDGLQ--VRLDIADGKRNDNKG 110
L+ AL +GRI +D +R+DIAD +R N G
Sbjct: 114 AQLKSALNCNGRIKLDNFSAPLRIDIADHRRQ-NPG 148
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 184 (69.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 43/96 (44%), Positives = 57/96 (59%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R LPTEPPYTA +GNL T GD+ F + + +VR+V+DK T KGF YVEF
Sbjct: 71 REPLPLPTEPPYTAHIGNLSFDATSGDISDLFADCGVTNVRIVEDKLTKAPKGFGYVEFE 130
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADG-KRNDNK 109
V+ L++AL G T+ G +R+ IA+ K D K
Sbjct: 131 TVDGLKKALDLSGA-TLQGRSIRVSIAEPPKERDVK 165
Score = 33 (16.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 102 DGK-RNDNKGGFNNK 115
+G+ RND+ GF +
Sbjct: 235 EGRPRNDDNAGFRTR 249
>UNIPROTKB|G4N5M5 [details] [associations]
symbol:MGG_05264 "Translation initiation factor 4B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CM001233 Gene3D:3.30.70.330 GO:GO:0003743
KO:K03258 RefSeq:XP_003712822.1 EnsemblFungi:MGG_05264T0
GeneID:2675531 KEGG:mgr:MGG_05264 Uniprot:G4N5M5
Length = 563
Score = 173 (66.0 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
+P +PPYTA +GNL T V FF ++VSVR+V+D+E R KGF Y EF E L
Sbjct: 76 IPDKPPYTAHLGNLSYDATNETVTDFFAACEVVSVRIVEDREQQRPKGFGYAEFATAEGL 135
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRN 106
++AL DG + G +R+ IAD +N
Sbjct: 136 QKALNFDGD-SFQGRVIRIRIADPPKN 161
Score = 33 (16.7 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 100 IADGKRNDNKG 110
+AD RND +G
Sbjct: 181 LADMPRNDRRG 191
>ZFIN|ZDB-GENE-060629-1 [details] [associations]
symbol:eif4ba "eukaryotic translation initiation
factor 4Ba" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060629-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
EMBL:BX511107 IPI:IPI00861203 Ensembl:ENSDART00000087899
Bgee:F1QNK2 Uniprot:F1QNK2
Length = 615
Score = 179 (68.1 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 41/107 (38%), Positives = 62/107 (57%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 85 DRSRLPRSPPYTAFLGNLPYDVTEDSIKNFFRGLSISAVRLPREPSNPERLKGFGYAEFD 144
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADG---KRNDNKGGFNNKQNR 118
DVE+L QAL + + ++R+DIAD K D++ +NR
Sbjct: 145 DVESLLQALSLNEE-NLGNRRIRVDIADQSNEKERDDRSVSGRDRNR 190
>UNIPROTKB|F8VSC7 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01020867
ProteinModelPortal:F8VSC7 SMR:F8VSC7 Ensembl:ENST00000550704
ArrayExpress:F8VSC7 Bgee:F8VSC7 Uniprot:F8VSC7
Length = 227
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|F8W0K0 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021052
ProteinModelPortal:F8W0K0 SMR:F8W0K0 Ensembl:ENST00000551002
ArrayExpress:F8W0K0 Bgee:F8W0K0 Uniprot:F8W0K0
Length = 170
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 40 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 99
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 100 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 144
>POMBASE|SPBC18H10.04c [details] [associations]
symbol:sce3 "translation initiation factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003723
"RNA binding" evidence=ISM] [GO:0003743 "translation initiation
factor activity" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005840 "ribosome" evidence=ISO] [GO:0006413 "translational
initiation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC18H10.04c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0005840 GO:GO:0003743
eggNOG:COG0724 GO:GO:0002183 KO:K03258 EMBL:AJ000318 PIR:T45516
RefSeq:NP_595728.1 ProteinModelPortal:O14369 STRING:O14369
PRIDE:O14369 EnsemblFungi:SPBC18H10.04c.1 GeneID:2540528
KEGG:spo:SPBC18H10.04c OMA:ENHRDFS OrthoDB:EOG40KC7K
NextBio:20801655 Uniprot:O14369
Length = 388
Score = 175 (66.7 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 41/100 (41%), Positives = 59/100 (59%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFK 66
GG Y R+ +P+EPP+TA VGNL +T+ D+ FF E + S+RLV D T+R +
Sbjct: 75 GGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSR 133
Query: 67 GFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 106
GF YVEF + L AL G + G VR+ +A+ +R+
Sbjct: 134 GFGYVEFETADTLSAALALSGEDLM-GRPVRITVAEPRRS 172
>UNIPROTKB|F8VP89 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021042
ProteinModelPortal:F8VP89 SMR:F8VP89 Ensembl:ENST00000552490
ArrayExpress:F8VP89 Bgee:F8VP89 Uniprot:F8VP89
Length = 275
Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>ZFIN|ZDB-GENE-030131-8563 [details] [associations]
symbol:eif4bb "eukaryotic translation initiation
factor 4Bb" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-8563 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
EMBL:CR936541 IPI:IPI00488890 Ensembl:ENSDART00000128308
Uniprot:F1Q8G3
Length = 632
Score = 164 (62.8 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +++ + FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPRSPPYTAFLGNLPYDVSEESIRDFFRGLAISAVRLPREPNNPERLKGFGYAEFD 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 109
D+E+L +AL + + ++R+DIAD + ND +
Sbjct: 146 DIESLLRALSLNEE-NLGNRRIRVDIAD-QSNDKE 178
Score = 36 (17.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 103 GKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQD 135
G R+ ++GGF+++ Y +D
Sbjct: 277 GSRDYDRGGFDSRGGGRRGFSSGFRRDYEDRRD 309
>UNIPROTKB|F8VYE9 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021378
ProteinModelPortal:F8VYE9 SMR:F8VYE9 Ensembl:ENST00000550390
ArrayExpress:F8VYE9 Bgee:F8VYE9 Uniprot:F8VYE9
Length = 185
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
D+++L AL + ++ ++R+D+AD ++ G
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKGTPG 181
>MGI|MGI:95304 [details] [associations]
symbol:Eif4b "eukaryotic translation initiation factor 4B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:95304 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 CTD:1975 eggNOG:NOG238591 HOGENOM:HOG000006553
HOVERGEN:HBG006129 KO:K03258 EMBL:AK045250 EMBL:AK077423
EMBL:AK170354 IPI:IPI00221581 RefSeq:NP_663600.2 UniGene:Mm.290022
UniGene:Mm.391795 ProteinModelPortal:Q8BGD9 SMR:Q8BGD9
MINT:MINT-1954873 STRING:Q8BGD9 PhosphoSite:Q8BGD9 PaxDb:Q8BGD9
PRIDE:Q8BGD9 Ensembl:ENSMUST00000169681 GeneID:75705 KEGG:mmu:75705
UCSC:uc007xuk.2 GeneTree:ENSGT00530000063406 InParanoid:Q8BGD9
OMA:YAEFDDV OrthoDB:EOG4SQWWX ChiTaRS:EIF4B NextBio:343748
Bgee:Q8BGD9 CleanEx:MM_EIF4B Genevestigator:Q8BGD9
GermOnline:ENSMUSG00000058655 Uniprot:Q8BGD9
Length = 611
Score = 172 (65.6 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 37/106 (34%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ DR KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>RGD|1306479 [details] [associations]
symbol:Eif4b "eukaryotic translation initiation factor 4B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306479 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 EMBL:CH474035 CTD:1975
eggNOG:NOG238591 HOGENOM:HOG000006553 HOVERGEN:HBG006129 KO:K03258
GeneTree:ENSGT00530000063406 OrthoDB:EOG4SQWWX EMBL:BC085933
IPI:IPI00373045 RefSeq:NP_001008325.1 UniGene:Rn.95954 SMR:Q5RKG9
STRING:Q5RKG9 Ensembl:ENSRNOT00000014033 GeneID:300253
KEGG:rno:300253 UCSC:RGD:1306479 InParanoid:Q5RKG9 NextBio:646645
Genevestigator:Q5RKG9 Uniprot:Q5RKG9
Length = 611
Score = 172 (65.6 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 37/106 (34%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ DR KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|F1MYS7 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:DAAA02012872
EMBL:DAAA02012873 IPI:IPI00700182 UniGene:Bt.77209
Ensembl:ENSBTAT00000009044 Uniprot:F1MYS7
Length = 610
Score = 170 (64.9 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|E2RKS4 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:AAEX03015001
EMBL:AAEX03015000 ProteinModelPortal:E2RKS4
Ensembl:ENSCAFT00000011414 Uniprot:E2RKS4
Length = 612
Score = 170 (64.9 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEDSIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|P23588 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102 GO:GO:0008286
GO:GO:0000166 GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330
EMBL:CH471054 GO:GO:0003743 GO:GO:0000289 Reactome:REACT_1762
EMBL:X55733 EMBL:AB076839 EMBL:CR456958 EMBL:AK222528 EMBL:BC073139
EMBL:BC073154 EMBL:BC098437 IPI:IPI00012079 PIR:S12566
RefSeq:NP_001408.2 UniGene:Hs.648394 UniGene:Hs.702041 PDB:1WI8
PDB:2J76 PDBsum:1WI8 PDBsum:2J76 ProteinModelPortal:P23588
SMR:P23588 IntAct:P23588 MINT:MINT-210187 STRING:P23588
PhosphoSite:P23588 DMDM:205371761 PaxDb:P23588 PRIDE:P23588
Ensembl:ENST00000262056 GeneID:1975 KEGG:hsa:1975 UCSC:uc001sbh.4
CTD:1975 GeneCards:GC12P053400 HGNC:HGNC:3285 HPA:CAB019440
MIM:603928 neXtProt:NX_P23588 PharmGKB:PA27713 eggNOG:NOG238591
HOGENOM:HOG000006553 HOVERGEN:HBG006129 InParanoid:P23588 KO:K03258
PhylomeDB:P23588 EvolutionaryTrace:P23588 GenomeRNAi:1975
NextBio:7995 PMAP-CutDB:P23588 ArrayExpress:P23588 Bgee:P23588
CleanEx:HS_EIF4B Genevestigator:P23588 GermOnline:ENSG00000063046
Uniprot:P23588
Length = 611
Score = 169 (64.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|E7EX17 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 OMA:YAEFDDV EMBL:AC068888 IPI:IPI01022506
ProteinModelPortal:E7EX17 SMR:E7EX17 PRIDE:E7EX17
Ensembl:ENST00000420463 UCSC:uc010snu.2 ArrayExpress:E7EX17
Bgee:E7EX17 Uniprot:E7EX17
Length = 616
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/106 (33%), Positives = 63/106 (59%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG--GFNNKQNR 118
D+++L AL + ++ ++R+D+AD ++ ++ F +NR
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVADQAQDKDRDDRSFGRDRNR 190
>UNIPROTKB|F8VX11 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021182
ProteinModelPortal:F8VX11 SMR:F8VX11 Ensembl:ENST00000549481
ArrayExpress:F8VX11 Bgee:F8VX11 Uniprot:F8VX11
Length = 360
Score = 163 (62.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIAD 102
D+++L AL + ++ ++R+D+AD
Sbjct: 146 DLDSLLSALSLNEE-SLGNRRIRVDVAD 172
>UNIPROTKB|F8VRU1 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021513
ProteinModelPortal:F8VRU1 SMR:F8VRU1 Ensembl:ENST00000549077
ArrayExpress:F8VRU1 Bgee:F8VRU1 Uniprot:F8VRU1
Length = 175
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKET-DRFKGFCYVEFV 74
++ LP PPYTAF+GNLP +T+ ++ FF + +VRL ++ +R KGF Y EF
Sbjct: 86 DRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 145
Query: 75 DVENLRQAL 83
D+++L AL
Sbjct: 146 DLDSLLSAL 154
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 149 (57.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 38/106 (35%), Positives = 61/106 (57%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRF 65
G PER R EP + +VGNLP + G +E+ F E K+V R+V D+ET R
Sbjct: 230 GSRPERAPRVY-----EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 284
Query: 66 KGFCYVEFVDVENLRQALLK-DGRITVDGLQVRLDIADGKRNDNKG 110
+GF +V DV+ L +A+ DG+ ++G +R+++A+ +R +G
Sbjct: 285 RGFGFVTMSDVDELNEAISALDGQ-NLEGRAIRVNVAE-ERPPRRG 328
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 151 (58.2 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 38/114 (33%), Positives = 58/114 (50%)
Query: 2 ADYSYGGYPERYGRNQKTL--PTEPPY-TAFVGNLPNGITQGDVERFF-PEQKLVSVRLV 57
A+ GG+ ER ++ T P T FVGNLP + V F P+ ++ +RL
Sbjct: 357 ANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLP 416
Query: 58 KDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
D E+ R KGF YV++ V+ R+A + +DG +RLD + + N+ GG
Sbjct: 417 TDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPRANNGGGG 470
Score = 132 (51.5 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
FVGNL +T+ + + F + +S R++ +++T R +GF YVEF + + +A
Sbjct: 280 FVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKE 339
Query: 89 ITVDGLQVRLDIADGK-RNDNKGGFNNK-QNR 118
+DG ++ LD A G+ N ++GGF + QNR
Sbjct: 340 HEIDGRKINLDYATGRPANKDQGGFKERAQNR 371
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L T+ +E+ F + ++ V +VKD+E+ R +GF +V F + E+ + A++
Sbjct: 9 FVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGGF 112
+VDG Q+R+D A ND +GG+
Sbjct: 69 GKSVDGRQIRVDQAGKSSNDRRGGY 93
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 131 (51.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/85 (36%), Positives = 48/85 (56%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F + ++ V +VKD+ET R +GF +V F + E+ + A+
Sbjct: 9 FVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGGF 112
TVDG Q+R+D A ND +GG+
Sbjct: 69 GKTVDGRQIRVDQAGKSSNDRRGGY 93
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 131 (51.2 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 31/101 (30%), Positives = 52/101 (51%)
Query: 13 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYV 71
+ RN + + F+G L T+ +E F + ++ V +++D+ETDR +GF +V
Sbjct: 10 FNRNSEVIIMSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFV 69
Query: 72 EFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGF 112
F + E+ + A+ VDG +R+D A GK GGF
Sbjct: 70 TFENPEDAKDAMAAMNGKQVDGRMIRVDEA-GKSGGRSGGF 109
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 131 (51.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK +DN+
Sbjct: 69 GKSVDGRQIRVDQA-GKSSDNR 89
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 29 FVGNLPNGITQGD-VERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
F+G L N T D +E+ F + +S V +VKD+ET R +GF +V F +V++ + A++
Sbjct: 8 FIGGL-NFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 87 GRITVDGLQVRLDIADGKRNDNKGGF 112
+VDG Q+R+D A + +GG+
Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERRGGY 92
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L + +E+ F + +S V +VKD+ET R +GF +V F + ++ + A++
Sbjct: 8 FIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMN 67
Query: 88 RITVDGLQVRLDIADGKRNDNKGGF 112
VDG Q+R+D A D +GG+
Sbjct: 68 GKAVDGRQIRVDQAGKSSGDRRGGY 92
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F GNL I + D+E FF E ++V VRL + FKG+ ++EF E ++AL
Sbjct: 385 TLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 86 DGRITVDGLQVRLDIADGK---RNDNKG 110
+G++ + G VRLD+A+ + RN N G
Sbjct: 444 NGKLLL-GRDVRLDLANERGTPRNSNPG 470
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 131 (51.2 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 21 PTEPPYTAFVGNLP-NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
P+EP T F+GNL N E F ++VSVR+ ET++ KGF YV+F ++E+
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 80 RQAL-LKDGRITVDGLQVRLDIADGKRNDNKGG 111
++AL G +D VRLD + + N N GG
Sbjct: 322 KKALDALQGEY-IDNRPVRLDFSSPRPN-NDGG 352
Score = 105 (42.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 31/129 (24%), Positives = 56/129 (43%)
Query: 11 ERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFC 69
E + QK TE P T FVG L I +++ F ++ R++ ++ TDR +G+
Sbjct: 153 ESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYG 212
Query: 70 YVEFVDVENLRQALLKDGRITVDGLQVRLDIADGK---RNDNKGGFNNKQNRXXXXXXXX 126
YV+F + +A+ + +DG + D++ K ND F + +
Sbjct: 213 YVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLG 272
Query: 127 XNKYNQHQD 135
+N +D
Sbjct: 273 NLSFNADRD 281
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 30 VGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
VG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 89 ITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK ++N+
Sbjct: 70 KSVDGRQIRVDQA-GKSSENR 89
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 30 VGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
VG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 89 ITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK ++N+
Sbjct: 70 KSVDGRQIRVDQA-GKSSENR 89
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 30 VGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
VG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 89 ITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A GK ++N+
Sbjct: 70 KSVDGRQIRVDQA-GKSSENR 89
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
++ +VGN P T+ D+ +F + VS VR+V D+ET R +GF +VEF + ++A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 85 KDGRITVDGLQVRLDIADGKRN 106
+ + +G +R+++A + N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
++ +VGN P T+ D+ +F + VS VR+V D+ET R +GF +VEF + ++A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 85 KDGRITVDGLQVRLDIADGKRN 106
+ + +G +R+++A + N
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 11 ERYGRNQKTLPTEPPY----TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRF 65
E+ Q P+ P T F NL I + DVE FF E ++V VR +++ F
Sbjct: 278 EKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSF 337
Query: 66 KGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIAD--GKRND 107
+GF +VEF E ++AL GR + G ++RLDIA G+R +
Sbjct: 338 RGFGHVEFASSEEAQKALEFHGRPLL-GREIRLDIAQERGERGE 380
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 129 (50.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 37/110 (33%), Positives = 56/110 (50%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRF 65
G ++YG T+ E T FVGNLP + V FF E ++ S+RL ++E+ R
Sbjct: 327 GARAKKYG---DTVSPESD-TLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRR 382
Query: 66 KGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
KGF YV F VE+ + A + +++G RLD + + GGF +
Sbjct: 383 KGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTPRPPREDGGFGGR 432
Score = 122 (48.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 32/100 (32%), Positives = 51/100 (51%)
Query: 11 ERYGRNQKTLPTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFC 69
E + KT ++ P T FVGNL + + E F + S R++ D+E+ R KGF
Sbjct: 224 EAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFG 283
Query: 70 YVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKR-NDN 108
YV+F E +A + +DG ++++D + GK N N
Sbjct: 284 YVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSN 323
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 124 (48.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGGFNNKQNR 118
+VDG Q+R+D A G D G N ++R
Sbjct: 69 GKSVDGRQIRVDQAGG--GDRGYGGNRFESR 97
>DICTYBASE|DDB_G0284167 [details] [associations]
symbol:DDB_G0284167 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000063 eggNOG:COG0724 RefSeq:XP_638767.1
ProteinModelPortal:Q54Q30 STRING:Q54Q30 EnsemblProtists:DDB0233340
GeneID:8624438 KEGG:ddi:DDB_G0284167 InParanoid:Q54Q30 OMA:DASANNE
Uniprot:Q54Q30
Length = 293
Score = 124 (48.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 34/93 (36%), Positives = 50/93 (53%)
Query: 19 TLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVE 77
T PT P + FVGNL + +E F E K++SVR++K K GF V+ D+E
Sbjct: 10 TTPTTPAHRIFVGNLTENVESSTLETAFAEFGKVLSVRIIKKKFKSNTFGF--VDMEDLE 67
Query: 78 NLRQALLK-DGRITVDGLQVRLDIADGKRNDNK 109
+A+ +GR DG QV ++IA K ++K
Sbjct: 68 TANKAVAAINGR-EFDGKQVNVEIAREKSTESK 99
>FB|FBgn0020660 [details] [associations]
symbol:eIF-4B "Eukaryotic initiation factor 4B" species:7227
"Drosophila melanogaster" [GO:0005829 "cytosol"
evidence=ISS;IDA;IPI] [GO:0003743 "translation initiation factor
activity" evidence=ISS;IPI] [GO:0006413 "translational initiation"
evidence=ISS;IPI] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0046427 "positive regulation of
JAK-STAT cascade" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0000166 GO:GO:0008283 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046427 GO:GO:0003743 EMBL:CM000457
KO:K03258 GeneTree:ENSGT00530000063406 UniGene:Dm.5911
GeneID:3355041 KEGG:dme:Dmel_CG10837 CTD:3355041
FlyBase:FBgn0020660 ChiTaRS:eIF-4B GenomeRNAi:3355041
NextBio:850265 EMBL:BT015266 EMBL:BN000680 RefSeq:NP_001015319.1
SMR:Q7PLL3 IntAct:Q7PLL3 STRING:Q7PLL3 EnsemblMetazoa:FBtr0113680
UCSC:CG10837-RB InParanoid:Q7PLL3 OMA:PRANRIF Uniprot:Q7PLL3
Length = 459
Score = 127 (49.8 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVK-DKETDRFKGFCYVEFV 74
+ ++P + P+ A++ NLP + D+ FF L+S+RL + D E R +GF YVE
Sbjct: 70 DDNSIPHKAPFIAYINNLPFDANEDDLYEFFEGINLISLRLPREDGENGRSRGFGYVELE 129
Query: 75 DVENLRQAL-LKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNR 118
+ E+L L L D ++ G ++R+++++ ND + K NR
Sbjct: 130 NREDLIHVLSLPDP--SIKGRRIRIELSN--ENDQQS--RQKSNR 168
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GDV F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 123 (48.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 7 GGYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRF 65
G PER R + + +VGNLP + G +ER F E K+V R+V D+ET R
Sbjct: 193 GSRPERQPRVY-----DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRS 247
Query: 66 KGFCYVEFVDVENLRQALLK-DGRITVDGLQVRLDIAD 102
+GF +V+ + + A+ DG+ ++G +++++A+
Sbjct: 248 RGFGFVQMSNENEVNVAIAALDGQ-NLEGRAIKVNVAE 284
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 121 (47.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 27/91 (29%), Positives = 52/91 (57%)
Query: 20 LPTEPPY-TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVE 77
+ ++PP FVGN+P G+++ + F K+++ RLV D+ET + KGF + E+ D +
Sbjct: 1 MSSKPPSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDND 60
Query: 78 NLRQALLKDGRITVDGLQVRLDIADGKRNDN 108
+ A+ + G ++R+D ++ K + N
Sbjct: 61 SAASAVRNLNDTEIMGRKLRVDFSNEKPSTN 91
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VG+L +T +++ FF + ++ +L+ D+ET R KGF ++ + + ++A+ K
Sbjct: 21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80
Query: 88 RITVDGLQVRLDIA-----DGKRNDNKGGFNNKQNR 118
I + G ++R++IA D +R+ GG + R
Sbjct: 81 GIDLQGRKIRVNIARENTGDRRRDGGSGGRGGRGGR 116
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/96 (27%), Positives = 53/96 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VG+L +T +++ FF + ++ +L+ D+ET R KGF ++ + + ++A+ K
Sbjct: 21 YVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKAN 80
Query: 88 RITVDGLQVRLDIA-----DGKRNDNKGGFNNKQNR 118
I + G ++R++IA D +R+ GG + R
Sbjct: 81 GIDLQGRKIRVNIARENTGDRRRDGGSGGRGGRGGR 116
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 124 (48.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+EP T FVGNL T+ D+ F + S+RL D ++ R KGF YV F D+++ +
Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421
Query: 81 QALLKDGRITVDGLQVRLDIAD----GKRNDNKGGFNNK 115
+ + +G + G RLD + G +GGF +
Sbjct: 422 KCVEMNGHF-IAGRPCRLDFSTPRTGGGSRGGRGGFGGR 459
Score = 99 (39.9 bits), Expect = 0.00026, P = 0.00026
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T FVG L + + + F E +V R++ D ++ R KG+ YV+F E + A+
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 86 DGRITVDGLQVRLDIAD 102
+G +DG V LD+++
Sbjct: 324 NGTKEIDGRMVNLDLSN 340
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLD 99
+VDG Q+R+D
Sbjct: 69 GKSVDGRQIRVD 80
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
Y FVG L ++ F + ++ +++ D+ET R +GF +V F E +RQA+
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGGF 112
+DG + ++ A +R+D GGF
Sbjct: 66 AMNGQDLDGRNITVNEAQSRRSDGGGGF 93
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P T +VGNLP + +G+V+ F E V SVRLV+D++T R KGF +VE + ++A
Sbjct: 62 PTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEA-GAQKA 120
Query: 83 LLKDGRITVDGLQVR-LDIADGKRNDNK 109
++K + Q R L + + K D++
Sbjct: 121 MVK---LNDFNFQERTLKVREAKTQDSE 145
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P T +VGNLP + +G+V+ F E V SVRLV+D++T R KGF +VE + ++A
Sbjct: 62 PTMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEA-GAQKA 120
Query: 83 LLKDGRITVDGLQVR-LDIADGKRNDNK 109
++K + Q R L + + K D++
Sbjct: 121 MVK---LNDFNFQERTLKVREAKTQDSE 145
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 118 (46.6 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
++G LP +++GD+ F + + V + LV+DKET + +GF ++++ D + A+ G
Sbjct: 36 YIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNLG 95
Query: 88 RITVDGLQVRLDIADGKRNDNKGGFNN 114
TV G +R+D K+ D NN
Sbjct: 96 GATVLGRVLRVDHTRYKKRDEDEDTNN 122
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 31/102 (30%), Positives = 58/102 (56%)
Query: 10 PERYGRNQ-KTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKG 67
P+ G NQ K + T+ FVG +P+ +T+ +++ FF + +V ++++D ET+R +G
Sbjct: 95 PKGAGGNQSKDIKTKK---IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRG 151
Query: 68 FCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNK 109
F +V F E + + L K I + QV + A+ K++ N+
Sbjct: 152 FGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNR 193
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 38 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 97
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 98 GIKIKGRTIRVD 109
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 38 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 97
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 98 GIKIKGRTIRVD 109
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 116 (45.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>TAIR|locus:2101714 [details] [associations]
symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
Length = 427
Score = 104 (41.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 11 ERYGRNQKTLPTEPPY-TAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGF 68
++Y N T PY T FV L ++ ++R F + V LV D+ T++ KG+
Sbjct: 122 KKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGY 181
Query: 69 CYVEFVDVENLRQALLK-DGRITVDGLQVRLDIADGKRNDN 108
++E++ +++ A + DG+ +DG +V +D+ G+ N
Sbjct: 182 AFIEYMHTRDMKAAYKQADGQ-KIDGRRVLVDVERGRTVPN 221
Score = 34 (17.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 103 GKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQDKG 137
GK + +++Q R +K+++ +D+G
Sbjct: 272 GKERERSRELSHEQPRERSRDRPREDKHHRDRDQG 306
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 116 (45.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 112 (44.5 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 33/97 (34%), Positives = 46/97 (47%)
Query: 22 TEPPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
T PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 5 TRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
AL R V G Q+ + A G R G +K+
Sbjct: 65 EDALYNLNRKWVCGRQIEIQFAQGDRK-TPGQMKSKE 100
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F D E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 111 (44.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 22 TEPPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
T PP T+ F+ N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
AL R V G Q+ + A G R G +K+
Sbjct: 65 EDALYNLNRKWVCGRQIEIQFAQGDRK-TPGQMKSKE 100
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L + +E F +S V +VKD+ET R +GFC++ F + E+ A+
Sbjct: 9 FLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMN 68
Query: 88 RITVDGLQVRLDIADGK 104
++DG Q+R+D A GK
Sbjct: 69 GKSLDGRQIRVDHA-GK 84
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 114 (45.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 11 ERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFC 69
++YG +Q P P T F+GNL + ++ F E ++S R+ +T + KGF
Sbjct: 259 KQYGDSQS--P--PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFG 314
Query: 70 YVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
YV+F V+ + AL ++G RLD + + N N NN++
Sbjct: 315 YVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRR 361
Score = 105 (42.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEF 73
+++ TE P T FVG L I ++R F ++ R++ ++ T + +G+ YV+F
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 114
+AL + +DG + LD++ GK + +K NN
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKS--NN 255
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 114 (45.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 11 ERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFC 69
++YG +Q P P T F+GNL + ++ F E ++S R+ +T + KGF
Sbjct: 259 KQYGDSQS--P--PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFG 314
Query: 70 YVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
YV+F V+ + AL ++G RLD + + N N NN++
Sbjct: 315 YVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNNRR 361
Score = 105 (42.0 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEF 73
+++ TE P T FVG L I ++R F ++ R++ ++ T + +G+ YV+F
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 114
+AL + +DG + LD++ GK + +K NN
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKS--NN 255
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 112 (44.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL- 84
T +VGNLP I + +VE F + +V + L K R G+ +VEF D + A+
Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 85 KDGRITVDGLQVRLDIADGKR---NDNKGGFN 113
+DG DG ++R+++A G R +D +G FN
Sbjct: 65 RDG-YDFDGHRLRVELAHGGRRSSDDTRGSFN 95
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 116 (45.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 30/88 (34%), Positives = 49/88 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
++GNL T+ D+ + F + + SVRL K+KET FKG+ +V+F D ++ AL D +
Sbjct: 265 YIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQ 324
Query: 89 ITVDGLQVRLDIA--DGKRNDNKGGFNN 114
+ + G V++ A D D+ G N
Sbjct: 325 V-ICGRPVKICCALKDRPATDHTPGETN 351
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 22/78 (28%), Positives = 48/78 (61%)
Query: 26 YTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
++ +VGN P T+ ++ FF ++ +VR+V D+ET R +GF ++EF + + ++A+
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 85 KDGRITVDGLQVRLDIAD 102
+ +G +R+++A+
Sbjct: 65 QMNGAEFNGRPLRVNLAN 82
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 110 (43.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL G+ +E F EQ K+V R++ D+++ R KGF +V + + ++ A+ D
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 87 GRITVDGLQVRLDIADGK 104
G +DG Q+R+ A+ +
Sbjct: 267 GA-DLDGRQIRVSEAEAR 283
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 111 (44.1 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LP +T+GD+ F + ++V++ LV DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+R+D A ++GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGSRGG 92
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+R+D A ++GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGSRGG 92
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
FV L T + + F P ++ RL++D ET R KGF ++ F ++ R+AL D
Sbjct: 10 FVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLD 69
Query: 87 GRITVDGLQVRLDIADGKRNDNKGGFNNK 115
G+I VDG + +++A G +NK
Sbjct: 70 GKI-VDGRLIFVEVAKNAEEVRAGINSNK 97
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 23/78 (29%), Positives = 47/78 (60%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
++ +VGN+P T+ ++ +F V+ VR+V D+ET R +GF +VEF + ++A+
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
Query: 85 KDGRITVDGLQVRLDIAD 102
+ + +G +R++ A+
Sbjct: 66 QLNGVAFNGRNLRVNYAN 83
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 107 (42.7 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T +V NLP +T D+ R F + K+V V ++KDK+T R KG ++ F+D ++ +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 86 DGRITVDGLQVRLDIA 101
+ G ++ IA
Sbjct: 71 INNKQLFGRVIKASIA 86
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 110 (43.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VGNLP IT ++ + F E +V V++V DK TDR +GF +V +E ++A+
Sbjct: 119 YVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFN 178
Query: 88 RITVDGLQVRLDIADGKR 105
+ G V+++ + R
Sbjct: 179 SSQIGGRTVKVNFPEVPR 196
Score = 107 (42.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 23 EPPYTAFVGNLPNGIT-QGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
+ P+ + GNL +T QG + F + ++ +++ ++ T R +GF ++ F EN++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 82 ALLKDGRITVDGLQVRLDIA 101
AL + V+G +RL++A
Sbjct: 276 ALATMNGVEVEGRALRLNLA 295
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMN 68
Query: 88 RITVDGLQVRLDIADGK--RNDNKGGF 112
++DG Q+R+D A GK R GGF
Sbjct: 69 GESLDGRQIRVDHA-GKSARGTRGGGF 94
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 78
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 24/91 (26%), Positives = 47/91 (51%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+E Y FVG L D++R F + ++ +++ D+E+ R +GF +V F D + +R
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 81 QALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
A+ + +DG + ++ A + + GG
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGSGGGGG 92
>CGD|CAL0004924 [details] [associations]
symbol:TIF3 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0002181 "cytoplasmic translation"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004924 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000064 EMBL:AACQ01000065 eggNOG:NOG238591
KO:K03258 RefSeq:XP_716672.1 RefSeq:XP_716731.1
ProteinModelPortal:Q5A4L8 STRING:Q5A4L8 GeneID:3641646
GeneID:3641707 KEGG:cal:CaO19.10927 KEGG:cal:CaO19.3423
Uniprot:Q5A4L8
Length = 455
Score = 112 (44.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQK----LVS-VRLVKDKETDRFKGFC 69
R + +P +PPY A V NLP + + +V R F ++ ++S + L KD++T R +GF
Sbjct: 86 RKEFPIPDQPPYRARVSNLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFA 145
Query: 70 YVEFVDVENLRQALLKDGRITVDGLQVRLDIA---DGKRNDNKGGFNNKQNR 118
+V F D L ++L G ++ +++A G+ D + G + R
Sbjct: 146 FVTFNDRALLEESL-NLSMTEFQGRKIYVNVAAPPKGEDGDWRAGRSGSNRR 196
>UNIPROTKB|Q5A4L8 [details] [associations]
symbol:TIF3 "Putative uncharacterized protein TIF3"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004924
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000064
EMBL:AACQ01000065 eggNOG:NOG238591 KO:K03258 RefSeq:XP_716672.1
RefSeq:XP_716731.1 ProteinModelPortal:Q5A4L8 STRING:Q5A4L8
GeneID:3641646 GeneID:3641707 KEGG:cal:CaO19.10927
KEGG:cal:CaO19.3423 Uniprot:Q5A4L8
Length = 455
Score = 112 (44.5 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 32/112 (28%), Positives = 57/112 (50%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQK----LVS-VRLVKDKETDRFKGFC 69
R + +P +PPY A V NLP + + +V R F ++ ++S + L KD++T R +GF
Sbjct: 86 RKEFPIPDQPPYRARVSNLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFA 145
Query: 70 YVEFVDVENLRQALLKDGRITVDGLQVRLDIA---DGKRNDNKGGFNNKQNR 118
+V F D L ++L G ++ +++A G+ D + G + R
Sbjct: 146 FVTFNDRALLEESL-NLSMTEFQGRKIYVNVAAPPKGEDGDWRAGRSGSNRR 196
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 106 (42.4 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 78
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D E+
Sbjct: 11 TVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKES 63
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 113 (44.8 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 35/103 (33%), Positives = 51/103 (49%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 418 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 475
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K KGGF +
Sbjct: 476 SEEDAKTAKEAMEDGEI--DGNKVTLDWAKPK---GKGGFGGR 513
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 109 (43.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-------VENLR 80
++GNL N +T+GD+ F + + + V LV+D ET + KG+C++ + D V+N
Sbjct: 39 YIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFN 98
Query: 81 QALLKDGRITVDG-LQVRLD---IADGKRNDNK 109
L + + VD L RL + D +N+ K
Sbjct: 99 GYKLLERPLVVDHILNYRLPKKYLKDADKNEYK 131
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 109 (43.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-------VENLR 80
++GNL N +T+GD+ F + + + V LV+D ET + KG+C++ + D V+N
Sbjct: 39 YIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNFN 98
Query: 81 QALLKDGRITVDG-LQVRLD---IADGKRNDNK 109
L + + VD L RL + D +N+ K
Sbjct: 99 GYKLLERPLVVDHILNYRLPKKYLKDADKNEYK 131
>UNIPROTKB|I3LK87 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR Ensembl:ENSSSCT00000023251
Uniprot:I3LK87
Length = 312
Score = 109 (43.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 29 FVGNLPNGITQGDVERFFPE----QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
F+G LP +T+GD+ F + ++V++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FLGGLPYELTEGDIICVFSQINRYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 98
Query: 85 KDGRITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 NFNGIKIKGRTIRVD 113
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 109 (43.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+ +++ + F + ++S+++V D+ET + KG+ ++EF D++ A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGG 111
+ G +R+D A G N + G
Sbjct: 79 LNGYELSGRILRVDSAAGGMNMEEFG 104
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVGN+P T+ + E +VS RLV D+ET + KG+ + E+ D E A
Sbjct: 12 FVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQ 71
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
++G Q+R+D A+ + +K
Sbjct: 72 SYEINGRQLRVDFAENDKGTDK 93
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F V R+V D+ET KGF +V+F
Sbjct: 186 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFN 243
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 244 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 281
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E LV S RLV D+ET + KG+ + E+ D E A+
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 85 LNGR-EFSGRALRVDNAASEKN 105
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 110 (43.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 81 LNGR-EFSGRALRVDNAASEKN 101
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQAL-- 83
T +VGNLP + V F E V SVRL+KDK T + +GF +VE ++L +A+
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISA 130
Query: 84 LKDGRITVDGLQVR 97
L D L+VR
Sbjct: 131 LNDTEFQQRTLKVR 144
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQAL-- 83
T +VGNLP + V F E V SVRL+KDK T + +GF +VE ++L +A+
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISA 130
Query: 84 LKDGRITVDGLQVR 97
L D L+VR
Sbjct: 131 LNDTEFQQRTLKVR 144
>ZFIN|ZDB-GENE-050626-88 [details] [associations]
symbol:rbmx2 "RNA binding motif protein, X-linked 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050626-88 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00600000084414 EMBL:AL935199
IPI:IPI00505218 Ensembl:ENSDART00000143373 Bgee:F1RAH8
Uniprot:F1RAH8
Length = 450
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G P +T+GD+ F + ++ ++ LV+DK+T + KGFC++ + D + A+
Sbjct: 39 FIGGFPYELTEGDIICVFSQYGEIANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFN 98
Query: 88 RITVDGLQVRLD 99
I + G +R+D
Sbjct: 99 GIKIKGRTIRVD 110
>SGD|S000001323 [details] [associations]
symbol:SNP1 "Component of U1 snRNP required for mRNA splicing
via spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IPI] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030619 "U1 snRNA binding"
evidence=IPI] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000001323 GO:GO:0000166
EMBL:BK006942 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
EMBL:Z38060 GO:GO:0000243 eggNOG:COG0724 GO:GO:0071004
GO:GO:0005685 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 HOGENOM:HOG000000970 OrthoDB:EOG4HMNKR
GO:GO:0030619 EMBL:X59986 EMBL:AY558085 PIR:S16815
RefSeq:NP_012203.1 ProteinModelPortal:Q00916 SMR:Q00916
DIP:DIP-663N IntAct:Q00916 MINT:MINT-397124 STRING:Q00916
PaxDb:Q00916 PeptideAtlas:Q00916 EnsemblFungi:YIL061C GeneID:854749
KEGG:sce:YIL061C CYGD:YIL061c OMA:ETSSSAY NextBio:977479
Genevestigator:Q00916 GermOnline:YIL061C Uniprot:Q00916
Length = 300
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/87 (29%), Positives = 51/87 (58%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T+P T F+G LP + + +++++F + ++ +R+VKDK T + KG+ ++ F D + +
Sbjct: 103 TDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSK 162
Query: 81 QALLKDGRITVDGLQV--RLDIADGKR 105
A + G G+Q+ R+ I D +R
Sbjct: 163 MAFKEIG--VHRGIQIKDRICIVDIER 187
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++ +
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 86 DGRITVDGLQVRLDIA 101
+ G ++ IA
Sbjct: 71 INNKQLFGRVIKASIA 86
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 109 (43.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
Y F+G LP+ +T+ D+ FF K+ V ++ D+E + +GF ++ F + E+ + +
Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEE-ESSVEHVT 154
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGGFNNKQN 117
+ I ++G QV + A+ + D GG N+ +
Sbjct: 155 NERYINLNGKQVEIKKAEPR--DGSGGQNSNNS 185
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
F+G++P T+ DV F E +V V L+KD++T +G C+V++ E +A+
Sbjct: 125 FIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALH 184
Query: 87 GRITVDGLQ--VRLDIADGKRNDNKGGFNNK 115
+ T+ G +++ ADG+R + G +K
Sbjct: 185 NQYTLPGAMGPIQVRYADGER-ERHGAIEHK 214
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
F+G++P T+ DV F E +V V L+KD++T +G C+V++ E +A+
Sbjct: 125 FIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALH 184
Query: 87 GRITVDGLQ--VRLDIADGKRNDNKGGFNNK 115
+ T+ G +++ ADG+R + G +K
Sbjct: 185 NQYTLPGAMGPIQVRYADGER-ERHGAIEHK 214
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 109 (43.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|Q5JRI1 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 HGNC:HGNC:16713 IPI:IPI00645384 SMR:Q5JRI1
Ensembl:ENST00000374453 Uniprot:Q5JRI1
Length = 172
Score = 100 (40.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 103 (41.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 78
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 103 (41.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 78
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 103 (41.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVEN 78
T +V NLP +T D+ R F + K+V V ++KDK+T + KG ++ F+D ++
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 101 (40.6 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L T+ +E F + +++ V + +++ET+R +GF +V F + ++ + AL
Sbjct: 8 FIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMN 67
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
+VDG +R+D A GK GG
Sbjct: 68 GKSVDGRTIRVDEA-GKGGGGGGG 90
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 11 ERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCY 70
E G N ++ P++ T FV L T+ ++ F + V R+V D+ET KGF +
Sbjct: 557 ELQGSNSRSQPSK---TLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGF 611
Query: 71 VEFVDVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
V+F E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 612 VDFNSEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 653
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 12 RYGRNQKTLPTEPPY----TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFK 66
R R++K P P T F +P T+ DV FF + K+ VRL+ D+ + R K
Sbjct: 150 RRHRDKKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSK 209
Query: 67 GFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 106
G Y+EF DV ++ A+ G++ + G V + ++ ++N
Sbjct: 210 GVGYIEFYDVMSVPMAIALSGQLFL-GQPVMVKPSEAEKN 248
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E F +S V +VKD+ET R +GF ++ F + E+ +
Sbjct: 9 FVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+R+D A +GG
Sbjct: 69 GESLDGRQIRVDHAGKSARGTRGG 92
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 29 FVGNLPNGIT-QGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L T QG E F ++V ++V D+ +DR KGF +V F + ++AL++
Sbjct: 37 FIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFN 96
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++G + +D A K++ GG
Sbjct: 97 GQQLNGRTIFVDYAKAKQSLGGGG 120
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 106 (42.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 27 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 86
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 87 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 116
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 109 (43.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 100 (40.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 100 (40.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 109 (43.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 109 (43.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + R+V D+ET KGF +V+F
Sbjct: 215 RGSPNARSQPSKTLFVKGLSEETTEETLKESFDGS--IRARIVTDRETGSSKGFGFVDFN 272
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 273 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 310
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 31 GNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DGR 88
GN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+ +GR
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 89 ITVDGLQVRLDIADGKRN 106
G +R+D A ++N
Sbjct: 62 -EFSGRALRVDNAASEKN 78
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ ++ F E +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 86 -DGRITVDGLQVRLDIADGKRN 106
+GR G +R+D A ++N
Sbjct: 77 LNGR-EFSGRALRVDNAASEKN 97
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 29 FVGNLPNGITQGDVER-FFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL-KD 86
+VGNLP I + ++E F+ ++V + L K R +C+VEF + A+ +D
Sbjct: 10 YVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIKGRD 66
Query: 87 GRITVDGLQVRLDIADGKR----NDNKGGF 112
G +DG ++R+++A G R +D +GG+
Sbjct: 67 G-YNLDGCRLRVELAHGGRGQSSSDRRGGY 95
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 34/103 (33%), Positives = 51/103 (49%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 564 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 621
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 622 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 659
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 34/103 (33%), Positives = 51/103 (49%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 561 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 618
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 619 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 656
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 109 (43.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 34/103 (33%), Positives = 51/103 (49%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + V R+V D+ET KGF +V+F
Sbjct: 565 RGSPNARSQPSKTLFVKGLSEDTTEETLKESF--EGSVRARIVTDRETGSSKGFGFVDFN 622
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 623 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 660
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 109 (43.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 32/96 (33%), Positives = 48/96 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T FV L I + D+ F + V +VRL+ DK T R KG YVEF E + +A+
Sbjct: 267 TVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKAIAL 326
Query: 86 DGRITVDGLQVRL-DIADGKR--NDNKGGFNNKQNR 118
G + +DG Q+ + I K+ N G + ++R
Sbjct: 327 SGSV-LDGQQILVHSIQPEKKVIKSNSTGSSGGESR 361
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 106 (42.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>POMBASE|SPBC17G9.05 [details] [associations]
symbol:rct1 "RRM-containing cyclophilin regulating
transcription Rct1" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISM] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0006457 "protein folding"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0044732 "mitotic spindle pole body" evidence=IDA] [GO:1901407
"regulation of phosphorylation of RNA polymerase II C-terminal
domain" evidence=IMP] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC17G9.05 GO:GO:0006457 GO:GO:0008360 GO:GO:0044732
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000790 GO:GO:0006368
GO:GO:1901407 eggNOG:COG0652 GO:GO:0003755 SUPFAM:SSF50891
HOGENOM:HOG000186284 KO:K12735 OMA:DRTQNRS OrthoDB:EOG4WWVT7
PIR:T39728 RefSeq:NP_595894.1 ProteinModelPortal:Q9UUE4
STRING:Q9UUE4 EnsemblFungi:SPBC17G9.05.1 GeneID:2539942
KEGG:spo:SPBC17G9.05 NextBio:20801085 Uniprot:Q9UUE4
Length = 432
Score = 106 (42.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/114 (23%), Positives = 56/114 (49%)
Query: 24 PPYTAFVGNLPNGITQG-DVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
P FV L N +TQ D+E F K++S ++++DKET + ++EF + E++ +
Sbjct: 242 PENVLFVCKL-NPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Query: 82 ALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQD 135
A K + +D ++ +D + + +N+ ++R +Y++ D
Sbjct: 301 AYFKMQNVLIDDSRIHVDFSQSVARYRQY-YNSNRDRKRSSSRSDDREYHRRSD 353
>UNIPROTKB|D4A5G0 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01622 EMBL:AC118414 IPI:IPI00951290
ProteinModelPortal:D4A5G0 Ensembl:ENSRNOT00000068388
ArrayExpress:D4A5G0 Uniprot:D4A5G0
Length = 440
Score = 106 (42.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 145 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 204
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 205 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 234
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 102 (41.0 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
+ PY +VGNL +T+ +E F E+ K+VS ++ + T + GF +V F E++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 82 ALLKDGRITVDGLQVRLDIA 101
A++ ++G ++R++ A
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
>DICTYBASE|DDB_G0280529 [details] [associations]
symbol:cstf2 "cleavage stimulation factor 64 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
Length = 541
Score = 107 (42.7 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 27 TAFVGNLPNGITQGD-VERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P + D +E F K+VS RL++DK++ + KG+ + E+ +V+N A+
Sbjct: 4 SVFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSAIRN 63
Query: 86 DGRITVDGLQVRLDIADGKR 105
T +R+ AD ++
Sbjct: 64 YMLFTFGNRVLRVSYADNEK 83
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F V R+V D+ET KGF +V+F
Sbjct: 561 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFN 618
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 619 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 656
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F V R+V D+ET KGF +V+F
Sbjct: 562 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFN 619
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 620 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 657
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F V R+V D+ET KGF +V+F
Sbjct: 563 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFN 620
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 621 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 658
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F V R+V D+ET KGF +V+F
Sbjct: 566 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFN 623
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 624 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 661
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 102 (41.0 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 30/94 (31%), Positives = 50/94 (53%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL- 84
T +VGNLP I + +VE F + +V + L K R G+ +VEF D + A+
Sbjct: 8 TIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 85 KDGRITVDGLQVRLDIADGKR---NDNKGGFNNK 115
+DG DG +R+++A G R +D +G ++ +
Sbjct: 65 RDG-YDFDGHHLRVELAHGGRRSSHDARGSYSGR 97
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + R+V D+ET KGF +V+F
Sbjct: 476 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--IRARIVTDRETGSSKGFGFVDFN 533
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 534 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 571
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + R+V D+ET KGF +V+F
Sbjct: 481 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--IRARIVTDRETGSSKGFGFVDFN 538
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 539 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 576
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 107 (42.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + R+V D+ET KGF +V+F
Sbjct: 481 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--IRARIVTDRETGSSKGFGFVDFN 538
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 539 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 576
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 106 (42.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 106 (42.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 106 (42.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T + FVG+L IT D++ F P K+ R+VKD T + KG+ +V F + +
Sbjct: 54 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 113
Query: 81 QALLKDGRITVDGLQVR 97
A++ G + G Q+R
Sbjct: 114 NAIVHMGGQWLGGRQIR 130
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 106 (42.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 106 (42.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 106 (42.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 106 (42.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 106 (42.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL 213
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
G+ V G+ + + + ++N NN Q
Sbjct: 214 TGQ-RVLGVPIIVQASQAEKNRAAAMANNLQ 243
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 103 (41.3 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VG +P +T+GD+ F + ++V V L++DK T + KGF ++ + D + A+
Sbjct: 39 YVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLN 98
Query: 88 RITVDGLQVRLDIADG-KRNDNKGGFNNKQNR 118
V G +++D K+++ + +QNR
Sbjct: 99 GALVLGRTIKVDHCGAYKKHEEEDEETRRQNR 130
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 107 (42.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + R+V D+ET KGF +V+F
Sbjct: 571 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGS--IRARIVTDRETGSSKGFGFVDFN 628
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 629 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 666
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 103 (41.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + + + +F +V + +V DKET + +GF +VEF D + + + +L+
Sbjct: 125 FVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQ 184
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++G V + A K+ND +GG
Sbjct: 185 H-QLNGKMVDVKKALPKQNDQQGG 207
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 100 (40.3 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 16 NQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGF---CYV 71
N++ L E + FVGNL +T + F E +V R+V D +T R +G+ CY
Sbjct: 167 NKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYS 226
Query: 72 EFVDVENLRQALLKDGRITVDGLQVRLDIADGKR 105
++E ++L DG ++G +R+++A GK+
Sbjct: 227 SKAEMETALESL--DG-FELEGRAIRVNLAQGKK 257
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 101 (40.6 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 5 SYGGYPERYGRNQKTLPTEP-PYTAF-VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKE 61
SY ++ NQ P P T V L T+ D+ F L V +V D+
Sbjct: 112 SYSHDSKKDSHNQGDARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQR 171
Query: 62 TDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKR 105
T R +GF +V F +++ ++A+ + + +DG ++R+D + KR
Sbjct: 172 TGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRVDYSITKR 215
>UNIPROTKB|O75494 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IDA]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=NAS]
[GO:0006376 "mRNA splice site selection" evidence=IDA] [GO:0003723
"RNA binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016482
"cytoplasmic transport" evidence=IDA] [GO:0051082 "unfolded protein
binding" evidence=NAS] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0050733 "RS domain binding"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0006406 GO:GO:0016482 GO:GO:0048025
GO:GO:0006376 HOVERGEN:HBG107480 EMBL:AL590609 EMBL:AF047448
EMBL:AF067730 EMBL:AF449427 EMBL:AY150180 EMBL:AY150181
EMBL:AF419331 EMBL:AF419332 EMBL:AY048592 EMBL:AK001286
EMBL:AK001656 EMBL:AK296175 EMBL:BC001107 EMBL:BC005039
EMBL:BC010074 IPI:IPI00009071 IPI:IPI00074587 IPI:IPI00386662
IPI:IPI00412643 IPI:IPI00979506 RefSeq:NP_001177934.1
RefSeq:NP_001177935.1 RefSeq:NP_001177938.1 RefSeq:NP_006616.1
RefSeq:NP_473357.1 RefSeq:XP_003846472.1 RefSeq:XP_003846473.1
RefSeq:XP_003960063.1 UniGene:Hs.3530 UniGene:Hs.652334
ProteinModelPortal:O75494 SMR:O75494 IntAct:O75494
MINT:MINT-5002282 STRING:O75494 PhosphoSite:O75494 PaxDb:O75494
PRIDE:O75494 DNASU:10772 Ensembl:ENST00000343255
Ensembl:ENST00000344989 Ensembl:ENST00000374452
Ensembl:ENST00000453840 Ensembl:ENST00000492112 GeneID:100996657
GeneID:10772 KEGG:hsa:100996657 KEGG:hsa:10772 UCSC:uc021oin.1
UCSC:uc021oio.1 UCSC:uc021oir.1 UCSC:uc021ois.1 CTD:10772
GeneCards:GC01M024293 HGNC:HGNC:16713 MIM:605221 neXtProt:NX_O75494
PharmGKB:PA28427 eggNOG:NOG312850 InParanoid:O75494 KO:K12900
OMA:FAYVQYT OrthoDB:EOG4HMJBR NextBio:40903 ArrayExpress:O75494
Bgee:O75494 Genevestigator:O75494 GermOnline:ENSG00000188529
GO:GO:0050733 Uniprot:O75494
Length = 262
Score = 100 (40.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>MGI|MGI:1333805 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISO;IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISO;IC] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=ISO;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;IDA] [GO:0051082 "unfolded
protein binding" evidence=NAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1333805 GO:GO:0005654 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 GO:GO:0016482 GO:GO:0048025 GO:GO:0006376
HOVERGEN:HBG107480 EMBL:AL672076 GeneTree:ENSGT00700000104403
CTD:10772 eggNOG:NOG312850 KO:K12900 OMA:FAYVQYT OrthoDB:EOG4HMJBR
EMBL:AF042383 EMBL:AB015894 EMBL:AB015895 EMBL:AF060490
EMBL:AK014345 EMBL:AK168524 EMBL:AK168558 EMBL:BC037591
EMBL:BC043060 EMBL:BC083082 IPI:IPI00117232 IPI:IPI00473196
IPI:IPI00990689 RefSeq:NP_001073856.1 RefSeq:NP_034308.1
UniGene:Mm.10229 UniGene:Mm.472035 ProteinModelPortal:Q9R0U0
SMR:Q9R0U0 STRING:Q9R0U0 PhosphoSite:Q9R0U0 PaxDb:Q9R0U0
PRIDE:Q9R0U0 Ensembl:ENSMUST00000097844 Ensembl:ENSMUST00000105853
Ensembl:ENSMUST00000126641 GeneID:14105 KEGG:mmu:14105
UCSC:uc008vhb.1 UCSC:uc008vhd.1 InParanoid:B1AV44 ChiTaRS:SRSF10
NextBio:285142 Bgee:Q9R0U0 CleanEx:MM_FUSIP1 Genevestigator:Q9R0U0
GermOnline:ENSMUSG00000028676 Uniprot:Q9R0U0
Length = 262
Score = 100 (40.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>UNIPROTKB|F2Z3T5 [details] [associations]
symbol:Fusip1 "Protein Fusip1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0016482 "cytoplasmic
transport" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00195918
ProteinModelPortal:F2Z3T5 SMR:F2Z3T5 PRIDE:F2Z3T5
Ensembl:ENSRNOT00000011154 Uniprot:F2Z3T5
Length = 262
Score = 100 (40.3 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP T+ FV N+ + D+ R F +V V + D T R +GF YV+F DV +
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKR 105
AL R + G Q+ + A G R
Sbjct: 67 ALHNLDRKWICGRQIEIQFAQGDR 90
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LL 84
T FV L T+ + F + +S R+V D++T KGF +V+F E+ + A +
Sbjct: 552 TLFVRGLSEDTTEETLRESF--EGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 609
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGG 111
+DG I DG +V LD A K +GG
Sbjct: 610 EDGEI--DGNKVTLDFAKPKGEFQRGG 634
Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T FV NLP +T+ +++ F + + VRLV +KE KG Y+EF +AL +
Sbjct: 370 TLFVKNLPYRVTEDEMKNVF--ENALEVRLVLNKEGSS-KGMAYIEFKTEAEAEKALEEK 426
Query: 87 GRITVDGLQVRLDIADGK--RNDNKGG 111
VDG + +D K + KGG
Sbjct: 427 QGTEVDGRAMVIDYTGEKSQQESQKGG 453
Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T V NL ++ ++ F +K S+++ ++ + R KG+ +VEF E+ ++AL
Sbjct: 460 TLIVNNLSYAASEETLQELF--KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSC 516
Query: 87 GRITVDGLQVRLDIADG---KRNDN-KGGFNNK 115
++G +RL+ + K N N +GGFN +
Sbjct: 517 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQ 549
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LL 84
T FV L T+ + F + +S R+V D++T KGF +V+F E+ + A +
Sbjct: 554 TLFVRGLSEDTTEETLRESF--EGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGG 111
+DG I DG +V LD A K +GG
Sbjct: 612 EDGEI--DGNKVTLDFAKPKGEFQRGG 636
Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T FV NLP +T+ +++ F + + VRLV +KE KG Y+EF +AL +
Sbjct: 372 TLFVKNLPYRVTEDEMKNVF--ENALEVRLVLNKEGSS-KGMAYIEFKTEAEAEKALEEK 428
Query: 87 GRITVDGLQVRLDIADGK--RNDNKGG 111
VDG + +D K + KGG
Sbjct: 429 QGTEVDGRAMVIDYTGEKSQQESQKGG 455
Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T V NL ++ ++ F +K S+++ ++ + R KG+ +VEF E+ ++AL
Sbjct: 462 TLIVNNLSYAASEETLQELF--KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSC 518
Query: 87 GRITVDGLQVRLDIADG---KRNDN-KGGFNNK 115
++G +RL+ + K N N +GGFN +
Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQ 551
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 106 (42.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 30/87 (34%), Positives = 45/87 (51%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA--LL 84
T FV L T+ + F + +S R+V D++T KGF +V+F E+ + A +
Sbjct: 554 TLFVRGLSEDTTEETLRESF--EGSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGG 111
+DG I DG +V LD A K +GG
Sbjct: 612 EDGEI--DGNKVTLDFAKPKGEFQRGG 636
Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T FV NLP +T+ +++ F + + VRLV +KE KG Y+EF +AL +
Sbjct: 372 TLFVKNLPYRVTEDEMKNVF--ENALEVRLVLNKEGSS-KGMAYIEFKTEAEAEKALEEK 428
Query: 87 GRITVDGLQVRLDIADGK--RNDNKGG 111
VDG + +D K + KGG
Sbjct: 429 QGTEVDGRAMVIDYTGEKSQQESQKGG 455
Score = 97 (39.2 bits), Expect = 0.00065, P = 0.00065
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T V NL ++ ++ F +K S+++ ++ + R KG+ +VEF E+ ++AL
Sbjct: 462 TLIVNNLSYAASEETLQELF--KKATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSC 518
Query: 87 GRITVDGLQVRLDIADG---KRNDN-KGGFNNK 115
++G +RL+ + K N N +GGFN +
Sbjct: 519 NNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQ 551
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 97 (39.2 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 14 GRNQKTLPTEPPYTAF-VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYV 71
G +++ P T+ + NL T D+ R F + V + +DK + + KGF +V
Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
Query: 72 EFVDVENLRQALLK-DGRITVDGLQVRLDIADGKR-NDNKGG 111
F + + AL + DG++ VDG ++R+ +A R +D +GG
Sbjct: 66 RFYERRDAEHALDRTDGKL-VDGRELRVTLAKYDRPSDERGG 106
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 97 (39.2 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 14 GRNQKTLPTEPPYTAF-VGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYV 71
G +++ P T+ + NL T D+ R F + V + +DK + + KGF +V
Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65
Query: 72 EFVDVENLRQALLK-DGRITVDGLQVRLDIADGKR-NDNKGG 111
F + + AL + DG++ VDG ++R+ +A R +D +GG
Sbjct: 66 RFYERRDAEHALDRTDGKL-VDGRELRVTLAKYDRPSDERGG 106
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 106 (42.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 15 RNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV 74
R ++P T FV L T+ ++ F + R+V D+ET KGF +V+F
Sbjct: 574 RGSPNARSQPSKTLFVKGLSEETTEETLKESFDGS--IRARIVTDRETGSSKGFGFVDFN 631
Query: 75 DVENLRQA--LLKDGRITVDGLQVRLDIADGKRNDNKGGFNNK 115
E+ + A ++DG I DG +V LD A K +GGF +
Sbjct: 632 SEEDAKAAKEAMEDGEI--DGNKVTLDWAKPK---GEGGFGGR 669
>FB|FBgn0032822 [details] [associations]
symbol:CG10466 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:COG0724 KO:K13107 GeneTree:ENSGT00600000084414 HSSP:P33240
RefSeq:NP_610003.1 UniGene:Dm.28254 ProteinModelPortal:Q9VIS0
SMR:Q9VIS0 IntAct:Q9VIS0 MINT:MINT-903544 STRING:Q9VIS0
PaxDb:Q9VIS0 PRIDE:Q9VIS0 EnsemblMetazoa:FBtr0081291
EnsemblMetazoa:FBtr0332178 GeneID:35268 KEGG:dme:Dmel_CG10466
UCSC:CG10466-RA FlyBase:FBgn0032822 InParanoid:Q9VIS0 OMA:YMEGCAP
OrthoDB:EOG4ZPCBP PhylomeDB:Q9VIS0 GenomeRNAi:35268 NextBio:792713
ArrayExpress:Q9VIS0 Bgee:Q9VIS0 Uniprot:Q9VIS0
Length = 154
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/78 (29%), Positives = 44/78 (56%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FV P +T+GD+ F + ++V++ L++D +T + KGFC++ + D + A+
Sbjct: 37 FVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLN 96
Query: 88 RITVDGLQVRLD-IADGK 104
I + +R+D +AD K
Sbjct: 97 GIKILDRTLRVDHVADYK 114
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/88 (25%), Positives = 46/88 (52%)
Query: 27 TAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKD---KETDRFKGFCYVEFVDVENLRQA 82
T +VG LP T+ + + F P ++ V++ K+ K + +GF YVE+ D ++ ++A
Sbjct: 10 TLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDADDAKEA 69
Query: 83 LLKDGRITVDGLQVRLDIADGKRNDNKG 110
+ + G +++ A ++ N+G
Sbjct: 70 MDNMDQSEFFGRIIKVHAAKPPKSANEG 97
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 100 (40.3 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VGN+ G T ++E F V+ V ++ DK T KGF Y+EF D E++R A+ D
Sbjct: 101 YVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDE 160
Query: 88 RITVDGLQVRLDIADGKRNDNKGGFN 113
+ G Q+++ G + N+ G +
Sbjct: 161 SL-FRGRQIKV----GAKRTNRPGIS 181
>FB|FBgn0036156 [details] [associations]
symbol:CG11726 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BT023584 RefSeq:NP_648461.1
UniGene:Dm.27118 SMR:Q9VTH9 IntAct:Q9VTH9 MINT:MINT-910732
EnsemblMetazoa:FBtr0076172 GeneID:39275 KEGG:dme:Dmel_CG11726
UCSC:CG11726-RA FlyBase:FBgn0036156 eggNOG:NOG249279
InParanoid:Q9VTH9 OrthoDB:EOG4ZGMVC GenomeRNAi:39275 NextBio:812849
Uniprot:Q9VTH9
Length = 291
Score = 100 (40.3 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 17 QKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDV 76
++ + EPP+ A V NLP T+G++ + F + S+ + K+ R KGF YVE
Sbjct: 76 EEEVSMEPPFVALVSNLPMECTEGELRKVFTSFSIRSLTI--PKKGKRPKGFAYVEMDSR 133
Query: 77 ENLRQALLKD 86
E+L + L D
Sbjct: 134 EDLVRLLKMD 143
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 94 (38.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
+VGNL N + ++ER F L SV + ++ GF +VEF D + A+ + D
Sbjct: 13 YVGNLGNNGNKTELERAFGYYGPLRSVWVARNPP-----GFAFVEFEDPRDAADAVRELD 67
Query: 87 GRITVDGLQVRLDIADG-KRNDNKG 110
GR T+ G +VR+++++G KR+ N+G
Sbjct: 68 GR-TLCGCRVRVELSNGEKRSRNRG 91
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 95 (38.5 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 26 YTA-FVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
YT +VG LP T+ + R + EQ ++ V +V D+ET R +G+ +V F D E+ +A
Sbjct: 51 YTKIYVGGLP-WETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRA 109
Query: 83 LLKDGRITVDGLQVRLDIA--DGKRNDNK 109
++ + +DG + + ++A G+ N+N+
Sbjct: 110 C-QNPKPVIDGREAKCNLAYIGGRVNNNQ 137
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 100 (40.3 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 34/128 (26%), Positives = 55/128 (42%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
EPP FVG L IT+ + +F ++ S+ L D +T+ +GFC+V F +E Q
Sbjct: 112 EPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFA-LEEPVQ 170
Query: 82 ALLKDGRITVDGLQVRLDIADGK----RNDNK--------GGFNNKQNRXXXXXXXXXNK 129
LL++ + + + +A K + N+ GGF + R N
Sbjct: 171 KLLENRYHQIGSGKCEIKVAQPKEVYRQQQNRDRGFGGGRGGFRGRGGRGQGFNQGYNNY 230
Query: 130 YNQHQDKG 137
Y Q+ G
Sbjct: 231 YGQNYGGG 238
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 104 (41.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 30/101 (29%), Positives = 45/101 (44%)
Query: 10 PERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGF 68
P + + + T T + + D+E FF V VR++ D T R KG
Sbjct: 154 PPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGI 213
Query: 69 CYVEFVDVENLRQALLKDG-RITVDGLQVRLDIADGKRNDN 108
CYVEF D E++ L +G R+ LQ++ A+ R N
Sbjct: 214 CYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERNRAAN 254
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 94 (38.1 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VG LP + + FF +++ V +V D+ETDR +G+ +V F D E+ +A KD
Sbjct: 16 YVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC-KDP 74
Query: 88 RITVDG 93
T++G
Sbjct: 75 NPTIEG 80
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 21 PTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
P+ P + +VG+L +T+ + E+F P ++S+R+ +D T R G+ YV F +
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 114
+AL + G VR+ + + K G N
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 21 PTEPPYTAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
P+ P + +VG+L +T+ + E+F P ++S+R+ +D T R G+ YV F +
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNN 114
+AL + G VR+ + + K G N
Sbjct: 66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 100
>ZFIN|ZDB-GENE-040426-1415 [details] [associations]
symbol:zgc:65772 "zgc:65772" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1415 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
KO:K12900 EMBL:FP017231 EMBL:BC056275 EMBL:BC066442 IPI:IPI00934956
RefSeq:NP_956827.1 UniGene:Dr.84143 Ensembl:ENSDART00000101091
GeneID:393505 KEGG:dre:393505 InParanoid:Q7SZS0 NextBio:20814531
Uniprot:Q7SZS0
Length = 248
Score = 98 (39.6 bits), Expect = 0.00010, P = 0.00010
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 24 PPYTA-FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
PP ++ FV N+ + D+ R F +V V + D + R +GF Y++F DV +
Sbjct: 7 PPNSSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAED 66
Query: 82 ALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQ 116
AL R V G Q+ + A G R G NK+
Sbjct: 67 ALHNLDRKWVCGRQIEIQFAQGDRK-TPGQMKNKE 100
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 93 (37.8 bits), Expect = 0.00011, P = 0.00011
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 29 FVGNLP-NGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L N Q + F + V +VKD ET R +GF ++ F + E+ A+
Sbjct: 9 FVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRATN 68
Query: 88 RITVDGLQVRLDIADGKRNDNKGG 111
++DG Q+ +D A +GG
Sbjct: 69 GESLDGRQIHVDHAGKSARGTRGG 92
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 94 (38.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLR 80
T+P F+ +LP T + F + ++ +V D +T + KG+ +V F DVE+ +
Sbjct: 33 TQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAK 92
Query: 81 QALLKDGRITVDGLQVRLDIA 101
AL + T +G +++++ A
Sbjct: 93 AALEELNGSTFEGKKIKVEYA 113
Score = 33 (16.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 102 DGKRNDNKGGFNNKQNRXXXXXXXXXNKYNQHQDKG 137
D K+ND K N++N K ++ D G
Sbjct: 666 DTKKNDKK----NEKNGRDSDSKGKKRKRSESNDGG 697
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 27 TAFV--GNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVD-------V 76
TAFV G L + +++GD+ F + + V ++LV+DKET + +GF ++++ D V
Sbjct: 32 TAFVYFGGLDDTLSEGDIITIFSQYGEPVFLKLVRDKETGKSRGFGWLKYEDQRSTDLAV 91
Query: 77 ENLRQALLKDGRITVD 92
+NL A++KD + VD
Sbjct: 92 DNLGGAVIKDRMMRVD 107
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ +VGN+ G T ++E+ F VS V + D+ + KGF YVEF + E ++ AL
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAM 138
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNR 118
+ + G Q+++D KR NK G + NR
Sbjct: 139 TDSL-LRGRQIKVD---PKRT-NKPGMSTT-NR 165
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 103 (41.3 bits), Expect = 0.00011, P = 0.00011
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 24 PPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P + +VGN+ I + D++ F P +L V+L KD ET R +G+ +V+F D R+A
Sbjct: 271 PFHRLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREA 329
Query: 83 LLKDGRITVDGLQVRLDIADGK 104
L K + G +R+ + + K
Sbjct: 330 LEKMNGYDLGGRAIRVGLGNDK 351
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
TAF+ NL + D+ +FF + V S+R++ K+T + +G Y +FVD E+L A+ K
Sbjct: 652 TAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAK 711
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQN 117
+ ++ ++ IA K F + N
Sbjct: 712 NRKMFFGK---KISIARSNPKKGKKEFTRRGN 740
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQ--KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
FVGNLP IT+ + FF Q + +VR+V+DK+T + KGF +V F ++ AL
Sbjct: 249 FVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL 305
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 27/82 (32%), Positives = 47/82 (57%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVGNLP I++ ++ F E + +VRLV+D+++ KGF YV F +++ AL +G
Sbjct: 255 FVGNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALKLNG 314
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
T+ ++R+ + K + K
Sbjct: 315 S-TLQQRKIRVKRSVKKEKEKK 335
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T FV L N +T ++ FF + V ++V+DK + R KG YVEF ++++ A+
Sbjct: 241 TVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIAL 300
Query: 86 DGRITVDGLQVRLDIADGKRN 106
G+ + GL V + + + ++N
Sbjct: 301 SGKRLL-GLPVIVQLTEAEKN 320
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 101 (40.6 bits), Expect = 0.00013, P = 0.00013
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG +P+ + + + FF + +L ++++D T R +GF +V + + + L K
Sbjct: 133 FVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN 192
Query: 88 RITVDGLQVRLDIADGKR 105
RI + G QV + A+ K+
Sbjct: 193 RIELSGTQVEIKKAEPKK 210
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVS-VRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
FVG L + +E+ F + +S V +VKD+ET R +GF +V F ++++ + A++ +
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 87 GRITV 91
G++ +
Sbjct: 69 GKVRI 73
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VGNLP + + D+ ++F + SV++V++ T R KG+ +V +V + +AL G
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAHG 106
Query: 88 RITVDGLQVRLDIADGKRNDN 108
+ + G + + IA + +
Sbjct: 107 K-DLQGRSLVVRIAKSREQQH 126
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VGNLP + + D+ ++F + SV++V++ T R KG+ +V +V + +AL G
Sbjct: 47 YVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDAHG 106
Query: 88 RITVDGLQVRLDIADGKRNDN 108
+ + G + + IA + +
Sbjct: 107 K-DLQGRSLVVRIAKSREQQH 126
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 100 (40.3 bits), Expect = 0.00013, P = 0.00013
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 41 DVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLD 99
D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+ G+ V G+ + +
Sbjct: 11 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQ 69
Query: 100 IADGKRNDNKGGFNNKQ 116
+ ++N NN Q
Sbjct: 70 ASQAEKNRAAAMANNLQ 86
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 98 (39.6 bits), Expect = 0.00013, P = 0.00013
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T + FVG+L IT D++ F P ++ R+VKD T + KG+ +V F + +
Sbjct: 87 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 146
Query: 81 QALLKDGRITVDGLQVRLDIADGKRNDNKGGF--NNKQ 116
A+ + G + G Q+R + A K K + N KQ
Sbjct: 147 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 184
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
T F L I D+E FF K+ VR++ D+ + R KG YVEFVDV ++ A+
Sbjct: 132 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI 189
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T + FVG+L IT D++ F P ++ R+VKD T + KG+ +V F + +
Sbjct: 91 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 150
Query: 81 QALLKDGRITVDGLQVRLDIADGKRNDNKGGF--NNKQ 116
A+ + G + G Q+R + A K K + N KQ
Sbjct: 151 NAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 188
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 27 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
+ FVGNLP + + +E+ F + +++VR+V+DK T KGF YV F + +++ AL
Sbjct: 266 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 323
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 97 (39.2 bits), Expect = 0.00016, P = 0.00016
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 27 TAFVGNLPNGITQGDVER-FFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL- 84
T +VGNLP I + +VE F+ +V + L K R G+ +VEF D + A+
Sbjct: 8 TIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYG 64
Query: 85 KDGRITVDGLQVRLDIADGKR 105
+DG DG ++R++IA G R
Sbjct: 65 RDG-YDFDGCRLRVEIAHGGR 84
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 19 TLPTEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVE 77
T ++ + FVG+L IT D++ F P ++ R+VKD T + KG+ +V F +
Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158
Query: 78 NLRQALLKDGRITVDGLQVRLDIADGK 104
+ A+ + G + G Q+R + A K
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRK 185
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 100 (40.3 bits), Expect = 0.00016, P = 0.00016
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 27 TAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
+ FVGNLP + + +E+ F + +++VR+V+DK T KGF YV F + +++ AL
Sbjct: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL 345
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T + FVG+L IT D++ F P K+ R+VKD T + KG+ +V F + +
Sbjct: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
Query: 81 QALLKDGRITVDGLQVRLDIADGK 104
A++ G + G Q+R + A K
Sbjct: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 25 PYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
P F+G L + +E F + ++V V L+KD+ET++ +GF +V F + + A
Sbjct: 7 PGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAA 66
Query: 84 LK-DGRITVD 92
+G++TVD
Sbjct: 67 RDMNGKMTVD 76
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T + FVG+L IT D++ F P K+ R+VKD T + KG+ +V F + +
Sbjct: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
Query: 81 QALLKDGRITVDGLQVRLDIADGK 104
A++ G + G Q+R + A K
Sbjct: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 95 (38.5 bits), Expect = 0.00017, P = 0.00017
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T +V N+P +T D+ + + K+V V +VKDK T KG +V F+D E+
Sbjct: 11 TVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRS 70
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQN 117
+ G V+ IA N F K+N
Sbjct: 71 LNNKQLFGRMVKASIAID--NGRAAEFIRKRN 100
WARNING: HSPs involving 77 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.139 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 137 128 0.00091 102 3 11 22 0.44 31
29 0.41 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 327
No. of states in DFA: 525 (56 KB)
Total size of DFA: 122 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 14.42u 0.07s 14.49t Elapsed: 00:00:08
Total cpu time: 14.45u 0.07s 14.52t Elapsed: 00:00:09
Start: Thu Aug 15 13:15:51 2013 End: Thu Aug 15 13:16:00 2013
WARNINGS ISSUED: 2