RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13181
(137 letters)
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 60.9 bits (147), Expect = 8e-14
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 14 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVE 72
G + LP PPYTAF+GNLP +T+ ++ FF + +R KGF Y E
Sbjct: 4 GSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAE 63
Query: 73 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
F D+++L AL + ++ ++R+D+AD ++ + G
Sbjct: 64 FEDLDSLLSALSLNEE-SLGNKRIRVDVADQAQDKDSGP 101
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 57.7 bits (139), Expect = 1e-12
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 10 PERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGF 68
P R + + T F L I D+E FF V VR++ D+ + R KG
Sbjct: 3 PVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI 62
Query: 69 CYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 106
YVEF +++++ A+ G+ + G+ + + + ++N
Sbjct: 63 AYVEFCEIQSVPLAIGLTGQ-RLLGVPIIVQASQAEKN 99
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.7 bits (126), Expect = 8e-11
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+ V LP T+ D++ +F +++ V++ KD +T KGF +V F + E
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 81 QALLKDGRITVDGLQVRLDIADGKRNDN 108
+ + R +DG + + K++ +
Sbjct: 65 KVM--SQRHMIDGRWCDCKLPNSKQSQD 90
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 52.0 bits (124), Expect = 1e-10
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPEQK-LVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P V N+P ++ ++ FF + + +K E G V F + A
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 83 LLKDGRITVDGLQVRLDIA 101
++ + +V+L +
Sbjct: 68 VIDLNDRPIGSRKVKLVLG 86
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 52.3 bits (125), Expect = 2e-10
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 20 LPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENL 79
LP E ++ NLP IT ++ F K +R ++ T +G YV + D+ +
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIF--GKYGPIRQIRVGNTPETRGTAYVVYEDIFDA 59
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNR 118
+ A V + + + R K K+ +
Sbjct: 60 KNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQ 98
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 49.6 bits (118), Expect = 1e-09
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKE-TDRFKGFCYVEFVDVENLR 80
+ V N+P Q ++ F +L +VRL K T +GF +V+F+ ++ +
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 81 QAL--LKDGRITVDGLQVRLDIADGK 104
+A L + G ++ L+ AD +
Sbjct: 66 KAFNALCHSTH-LYGRRLVLEWADSE 90
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 49.1 bits (117), Expect = 1e-09
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+VG+L +T+ + F P ++S+R+ +D T R G+ YV F + +AL
Sbjct: 4 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 63
Query: 88 RITVDGLQVRLDIADGKRN 106
+ G VR+ + +R+
Sbjct: 64 FDVIKGKPVRIMWS--QRD 80
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 49.4 bits (117), Expect = 2e-09
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLV--SVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
F+GNL I + + F ++ + ++++D +T KG+ ++ F + A+
Sbjct: 2 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 61
Query: 87 GRITVDGLQVRLDIADGKRNDNKG 110
+ + + A K D+KG
Sbjct: 62 NGQYLCNRPITVSYAFKK--DSKG 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 47.3 bits (112), Expect = 8e-09
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G LPN + V+ L + LVKD T KG+ + E+VD+ QA+
Sbjct: 5 FIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 64
Query: 88 RITVDGLQVRLDIADGKRND 107
+ + ++ + A +
Sbjct: 65 GMQLGDKKLLVQRASVGAKN 84
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 47.6 bits (113), Expect = 8e-09
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 27 TAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T +VGNL T+ + F + + + DK GFC+VE+ + A+
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 86 DGRITVDGLQVRLDIADGKR 105
+D +R D G +
Sbjct: 69 INGTRLDDRIIRTDWDAGFK 88
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 47.0 bits (111), Expect = 1e-08
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
E F+G L T + F L +++D T R +GF +V + VE +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 82 ALLKDGRITVDGLQVRLDIA 101
A+ VDG V A
Sbjct: 64 AMNARPH-KVDGRVVEPKRA 82
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 46.1 bits (109), Expect = 2e-08
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
V NL G++ D++ F E + V + R G V F + +A+ +
Sbjct: 4 LVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNG 63
Query: 89 ITVDGLQVRLDIAD 102
+ +DG + + +
Sbjct: 64 VPLDGRPMNIQLVT 77
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.7 bits (110), Expect = 2e-08
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSV-RLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + +E+ F + +S +VKD+ET R +GF +V F ++++ + A++
Sbjct: 9 FVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
Query: 88 RITVDGLQVRLDIADGKRNDNK 109
+VDG Q+R+D A K +DN+
Sbjct: 69 GKSVDGRQIRVDQAG-KSSDNR 89
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.3 bits (109), Expect = 3e-08
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENL 79
P EP ++ NL +T+ D+ F + + T R +G ++ F + E
Sbjct: 14 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIA 73
Query: 80 RQALLKDGRITVDGLQVRLDIADGKR 105
QAL + G + ++ K+
Sbjct: 74 WQALHLVNGYKLYGKILVIEFGKNKK 99
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 45.0 bits (106), Expect = 6e-08
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L TQ + +F ++ +++D T R +GF +V F+D + + L +
Sbjct: 4 FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63
Query: 88 RITVDGLQVRLDIA 101
+D + +A
Sbjct: 64 H-ELDSKTIDPKVA 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 45.0 bits (106), Expect = 6e-08
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L + + +F ++ S+ L D +T++ +GFC++ F + E +++ + K
Sbjct: 3 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62
Query: 88 RITVDGLQVRLDIA 101
V + + +A
Sbjct: 63 H-NVGLSKCEIKVA 75
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 45.1 bits (106), Expect = 6e-08
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-DG 87
++GNL +T D+ + F ++K L + G+ +V++ D +A+ G
Sbjct: 5 YIGNLSPAVTADDLRQLFGDRK-----LPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSG 59
Query: 88 RITVDGLQVRLDIADGKRN 106
++ + G + +D + K+
Sbjct: 60 KVELHGKIMEVDYSVSKKL 78
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 44.6 bits (105), Expect = 8e-08
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+G L T+ D++ +F ++V L D T R +GF +V F + E++ + + +
Sbjct: 3 FIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKE 62
Query: 88 RITVDGLQVR 97
++G +
Sbjct: 63 H-KLNGKVID 71
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 45.1 bits (106), Expect = 8e-08
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 29 FVGNLPNGITQGDVERFFPE--QKLVSVRLVKDKE-TDRFKGFCYVEFVDVENLRQAL-- 83
F+G +P + ++ + + ++ V + + +GF +VE+ A
Sbjct: 5 FIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 64
Query: 84 LKDGRITVDGLQVRLDIADGKRN 106
L GRI + G Q+ +D A+ + +
Sbjct: 65 LMPGRIQLWGHQIAVDWAEPEID 87
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 44.9 bits (105), Expect = 8e-08
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P+ F+GNL + +++ E + V D T + F YV+F E+L +A
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA 70
Query: 83 LLKDGRITVDGLQVRLDIADGK 104
L G V G +++L+ G+
Sbjct: 71 LELTGL-KVFGNEIKLEKPKGR 91
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 45.0 bits (106), Expect = 9e-08
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
T NL IT+ +++ F + + + + KG Y+EF + +
Sbjct: 13 VRAARTLLAKNLSFNITEDELKEVFEDAL----EIRLVSQDGKSKGIAYIEFKSEADAEK 68
Query: 82 ALLKDGRITVDGLQVRLDIADGKRN 106
L + +DG V L K
Sbjct: 69 NLEEKQGAEIDGRSVSLYYTGEKGG 93
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.1 bits (106), Expect = 1e-07
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
E F+G L T+ + ++ + KL +++D + R +GF +V F + +
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 82 ALLKDGRITVDGLQVRLDIADGK 104
A+ ++DG V A +
Sbjct: 78 AMAARPH-SIDGRVVEPKRAVAR 99
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 44.6 bits (105), Expect = 1e-07
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 29 FVGNLPNGITQGDVERFF----PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
F+ NL T+ ++ F + + GF +VE+ E ++AL
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 85 KDGRITVDGLQVRLDIADGKR 105
+ TVDG ++ + I++
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 44.7 bits (105), Expect = 1e-07
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P V N+P D+ + F + + + + KGF +V F + + +A
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNERGSKGFGFVTFENSADADRA 67
Query: 83 LLKDGRITVDGLQVRLDIADGKRNDN 108
K V+G ++ ++ A + N
Sbjct: 68 REKLHGTVVEGRKIEVNNATARVMTN 93
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 44.7 bits (105), Expect = 1e-07
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+ FV NL ++ D+E+ F L + D T + KGF +V F+ E+
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 81 QALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
+A + G + + + K+ ++ G
Sbjct: 65 KAYAEVDGQVFQGRMLHVLPSTIKKEASQSG 95
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 44.6 bits (105), Expect = 1e-07
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
T +VG L +++ + F +V+ + KD+ T + +G+ +VEF+ E+
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 65
Query: 81 QALLKDGRITVDGLQVRLDIADGKRND 107
A+ I + G +R++ A +
Sbjct: 66 YAIKIMDMIKLYGKPIRVNKASAHNKN 92
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 44.7 bits (105), Expect = 1e-07
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 27 TAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+VG L + + F P + +++ D ET++ +GF +VEF E+ A+
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 86 DGRITVDGLQVRLDIADGKRN 106
+ G +R+++A R
Sbjct: 67 MNESELFGRTIRVNLAKPMRI 87
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 44.3 bits (104), Expect = 1e-07
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
+VGNLP I D+E F K ++R + K F +VEF D + A
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVF--YKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69
Query: 83 LLKDGRITVDGLQVRLDIADGKRN 106
+ DG ++R++ R
Sbjct: 70 VYGRDGYDYDGYRLRVEFPRSGRG 93
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.3 bits (104), Expect = 2e-07
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
+ T V NL + D++ F P + + L KDK T + KGF ++ F E+ +
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 65
Query: 82 ALLKDGRITVDGLQVRLDIADGKRN 106
A+ D L + ++ A N
Sbjct: 66 AIAGVSGFGYDHLILNVEWAKPSTN 90
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.9 bits (103), Expect = 2e-07
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
FVG +T+ ++ FF + ++ F+ F +V F D + + +D
Sbjct: 9 FVGRCTGDMTEDELREFFSQYG----DVMDVFIPKPFRAFAFVTFADDQIAQSLCGED-- 62
Query: 89 ITVDGLQVRLDIADGKRNDNKGG 111
+ + G+ V + A+ K N N G
Sbjct: 63 LIIKGISVHISNAEPKHNSNSGP 85
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 43.5 bits (102), Expect = 2e-07
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
+V NL ++ +E+ F + + + + + +V F + E+ +A+
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNI-----KPGAVERVKKIRDYAFVHFSNREDAVEAMKAL 64
Query: 87 GRITVDGLQVRLDIADGKRNDN 108
+DG + + +A D+
Sbjct: 65 NGKVLDGSPIEVTLAKPVDKDS 86
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 43.6 bits (102), Expect = 3e-07
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 20 LPTEPP--YTAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDV 76
LP++ T F+ NL + + L VR+V +T+ KG + +F+
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 60
Query: 77 ENLRQAL------LKDGRITVDGLQVRLDIADGK 104
E ++ L + G + +DG Q+++D+A +
Sbjct: 61 EAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 94
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 42.8 bits (100), Expect = 3e-07
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG L T DV+ +F + K+ L+ DK T+R +GF +V F + + +
Sbjct: 3 FVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHF 62
Query: 88 RITVDGLQVRLDIA 101
++ V A
Sbjct: 63 H-EINNKMVECKKA 75
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 42.7 bits (100), Expect = 5e-07
Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPE--QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
P +T ++ NL I + ++++ + + + + + +G +V F +V +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 82 ALLKDGRITVDGLQVRLDIADGKRN 106
AL +R+ A +
Sbjct: 62 ALRSMQGFPFYDKPMRIQYAKTDSD 86
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 42.5 bits (100), Expect = 7e-07
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 14 GRNQKTLPTEPPYTAFVGNL-PNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVE 72
G + KT P F+GNL + + DVE F + + KGF +V+
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI-------VGCSVHKGFAFVQ 56
Query: 73 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG 110
+V+ N R A+ + + G + +++A + + G
Sbjct: 57 YVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSG 94
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 42.4 bits (99), Expect = 1e-06
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 14 GRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEF 73
G + + + + + LP T+ D+ FF + V + + R G VEF
Sbjct: 4 GSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG-RVTGEADVEF 62
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKGG 111
E+ A+ KD + V L + G
Sbjct: 63 ATHEDAVAAMAKDKA-NMQHRYVELFLNSTAGTSGSGP 99
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 41.6 bits (97), Expect = 1e-06
Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG + + + +F + K+ + ++ D+ + + +GF +V F D +++ + +++
Sbjct: 6 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY 65
Query: 88 RITVDGLQVRLDIA 101
TV+G + A
Sbjct: 66 -HTVNGHNCEVRKA 78
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 41.7 bits (97), Expect = 1e-06
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 29 FVGNLPNGITQGDVERFFPEQ---KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ NL + ++ R E KE ++ F + ++ +AL
Sbjct: 8 MIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQM 67
Query: 86 DGRITVDGLQVRLDIADGK 104
+ + ++ + +AD K
Sbjct: 68 NRS-LLGNREISVSLADKK 85
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 41.6 bits (97), Expect = 1e-06
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
+P V L T+ D+ F + + V +V D+++ R +GF +V F +V++ ++
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 82 ALLKDGRITVDGLQVR 97
A + + +DG ++R
Sbjct: 67 AKERANGMELDGRRIR 82
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 41.6 bits (97), Expect = 2e-06
Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+V LP +TQ ++E+ F ++++ R++ D+ T +G ++ F +A+
Sbjct: 10 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 69
Query: 88 RITVDGLQVRLDI 100
G + +
Sbjct: 70 GQKPSGATEPITV 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 41.8 bits (97), Expect = 2e-06
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENL 79
A + N+P IT+ DV +F + + V + G V+F + ++
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 80 RQALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGG 120
R++ + ++G + + + + Q + G
Sbjct: 64 RKSERLHRK-KLNGREAFVHVVTLEDMREIEKNPPAQGKSG 103
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.3 bits (96), Expect = 3e-06
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 27 TAFVGNLPNGITQGDV-ERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
+ FVGN+P T+ + + F +VS RLV D+ET + KG+ + E+ D E A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 86 DGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGS 122
G +R+D A ++N + ++ G G+
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEE-----LKSLGTGA 101
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 40.9 bits (95), Expect = 4e-06
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
FVG LP T + ++F + ++ D++T + +G+ +V D +A KD
Sbjct: 14 FVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA-CKDP 72
Query: 88 RITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGGM 125
+DG + +++A + + G + G+
Sbjct: 73 NPIIDGRKANVNLAYLGAKP-------RSLQTGFAIGV 103
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 40.4 bits (94), Expect = 4e-06
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
P T +VGNL +T+ + Q E +C+VEF + + A
Sbjct: 6 GQPRTLYVGNLSRDVTEVLI-LQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAA 64
Query: 83 LLKDGRITVDGLQVRLDIADGKRN 106
L + G +V+++ A +
Sbjct: 65 LAAMNGRKILGKEVKVNWATTPSS 88
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.7 bits (92), Expect = 7e-06
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 29 FVGNLPNGITQGDVERFFPEQ------KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
+VGN+P GIT+ + FF Q V + ++ K F ++EF V+ QA
Sbjct: 5 YVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQA 64
Query: 83 LLKDGRITVDGLQVR 97
+ DG I G ++
Sbjct: 65 MAFDG-IIFQGQSLK 78
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 39.2 bits (91), Expect = 1e-05
Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 29 FVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
F+ NL I + F ++S ++V D+ + + +V F E +A+ K
Sbjct: 12 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEKMN 69
Query: 88 RITVDGLQVRLDIADGKR 105
+ ++ +V + ++
Sbjct: 70 GMLLNDRKVFVGRFKSRK 87
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 39.2 bits (91), Expect = 1e-05
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 29 FVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
V LP +T ++ F + + R+++D +T G+ +V+F + ++A+
Sbjct: 6 IVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 65
Query: 88 RITVDGLQVRLDIA 101
ITV ++++ A
Sbjct: 66 GITVRNKRLKVSYA 79
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 39.2 bits (91), Expect = 1e-05
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
+V NLP IT ++ F + +V +++DK T R +G +V + E ++A+
Sbjct: 10 YVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 69
Query: 88 RITVDGLQVRLDI 100
+ +G L +
Sbjct: 70 NVIPEGGSQPLSV 82
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 38.9 bits (90), Expect = 1e-05
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 26 YTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
+ FV ++ + +++ F + ++ ++ L D+ T KG+ VE+ + A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 85 KDGRITVDGLQVRLDIADGK 104
+ G +++D K
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.4 bits (93), Expect = 1e-05
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPEQ-KLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
E F+G L T + F + L +++D T R +GF +V + VE +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 82 AL 83
A+
Sbjct: 64 AM 65
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 38.5 bits (89), Expect = 2e-05
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 29 FVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDG 87
V LP +TQ + F ++ S +LV+DK T + G+ +V ++D ++ +A+
Sbjct: 6 IVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65
Query: 88 RITVDGLQVRLDIA 101
+ + +++ A
Sbjct: 66 GLRLQTKTIKVSYA 79
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 39.0 bits (90), Expect = 2e-05
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFF---------PEQKLVSVRLVKDKETDRFKGFCYVEF 73
+V L + +T D+ FF + + DKET + KG V +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 74 VDVENLRQALLKDGRITVDGLQVRLDIADGKRNDN 108
D + A+ G ++++ +A K N
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 100
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 38.8 bits (90), Expect = 2e-05
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 27 TAFVGNLPNGITQGDVERFF-PEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLK 85
T + G + +G+T + + F P +++ +R+ KG+ +V F E+ A++
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVS 73
Query: 86 DGRITVDGLQVRLDIADGKRN 106
T++G V+ +
Sbjct: 74 VNGTTIEGHVVKCYWGKESPD 94
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 38.0 bits (88), Expect = 3e-05
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
FVGNLP IT+ ++ + F + + + KGF ++ A ++
Sbjct: 12 FVGNLPPDITEEEMRKLFEK-----YGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN 66
Query: 89 ITVDGLQVRLDIADGKRN 106
+ + G Q+R+ A +
Sbjct: 67 MPLRGKQLRVRFACHSAS 84
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.8 bits (87), Expect = 5e-05
Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQA 82
F+ +LP D+ + F +VS ++ DK+T+ K F +V + + + + A
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 83 LLKDGRITVDGLQVRLDIADGKRNDNK 109
+ + ++++ + +ND+K
Sbjct: 77 IQSMNGFQIGMKRLKVQLKR-SKNDSK 102
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 36.7 bits (84), Expect = 8e-05
Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 26 YTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALL 84
T ++ N P TQ ++ + + + + + F Y++ E+ R +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 85 KDGRITVDGLQVRLDIAD 102
K + ++G + +++
Sbjct: 62 KLNGLKIEGYTLVTKVSN 79
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 36.6 bits (84), Expect = 1e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
+ ++ P T D++ + ++ V ++ FKG +V F +E+ ++ +
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 67
Query: 87 GRITVDGLQVRLDIAD 102
G + + D
Sbjct: 68 G-QKYKETDLLILFKD 82
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 36.5 bits (84), Expect = 1e-04
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
V P + +F ++ + + ++ + R+AL KDGR
Sbjct: 8 TVFGFPQASASYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKALSKDGR 61
Query: 89 ITVDGLQVR 97
I + + +
Sbjct: 62 IFGESIMIG 70
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 36.0 bits (82), Expect = 1e-04
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKD 86
T V NLP Q V ++F + V + F +EF + A+ K
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVA-DSLKKNFRFARIEFARYDGALAAITKT 60
Query: 87 GRITVDGLQVRLD 99
+ V ++ +
Sbjct: 61 HK-VVGQNEIIVS 72
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 36.4 bits (84), Expect = 2e-04
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 49 QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGRITVDGLQVRLDIADGKRN 106
K +R + G V F D E + G Q+ DG +
Sbjct: 41 SKFGQIRKLLLF-DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 36.8 bits (84), Expect = 2e-04
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 23 EPPYTAFVGNLPNGITQGDVERFFPE-QKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
+ V +P + + + + F + SV++V D+ET + +G+ +V+F + +Q
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 82 ALLKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSG 123
A+ + ++++ +A G G+G
Sbjct: 100 AIAGLNGFNILNKRLKVALAASGHQRPGIA----GAVGDGNG 137
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 36.3 bits (83), Expect = 2e-04
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 6/90 (6%)
Query: 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
+ V LP + D++ E + G VE++ E++
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAG------DVCYADVQKDGMGMVEYLRKEDME 64
Query: 81 QALLKDGRITVDGLQVRLDIADGKRNDNKG 110
AL K + + G
Sbjct: 65 YALRKLDDTKFRSHEGETSYIRVYPERSSG 94
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 35.5 bits (81), Expect = 4e-04
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
V L + + D+ + + FK VEF ++++ +
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKF-----GTICYVMMMPFKRQALVEFENIDSAK 65
Query: 81 QAL--LKDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRG 119
+ + D + + G Q + + KR G N+ + G
Sbjct: 66 ECVTFAADVPVYIAGQQAFFNYSTSKRITRPG--NSGPSSG 104
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 35.2 bits (80), Expect = 5e-04
Identities = 8/88 (9%), Positives = 23/88 (26%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQ 81
+ + + R E + + + + F + +
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAAD 61
Query: 82 ALLKDGRITVDGLQVRLDIADGKRNDNK 109
A L+ + G +++L A +
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTLHIGSS 89
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.7 bits (79), Expect = 6e-04
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
P T + N+P +++ D++ F V + K + + ++ VE QAL
Sbjct: 9 PSATLHLSNIPPSVSEEDLKVLFSSNGGV---VKGFKFFQKDRKMALIQMGSVEEAVQAL 65
Query: 84 -LKDGRITVDGLQVRLDIA 101
+ +R+ +
Sbjct: 66 IDLHNHDLGENHHLRVSFS 84
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 33.9 bits (77), Expect = 0.001
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 13 YGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVE 72
YG+ P +VG L + + R F ++ + + F Y++
Sbjct: 11 YGKAN------PTTRLWVGGLGPNTSLAALAREFDRF-----GSIRTIDHVKGDSFAYIQ 59
Query: 73 FVDVENLRQALLKDGRITVDGLQVRLDIADGKRNDNKG 110
+ ++ + A K + G RL + K + G
Sbjct: 60 YESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSSG 97
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 33.2 bits (75), Expect = 0.002
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLV-SVRLVKDKETDRFKGFCYVEFVDVENLRQALLK-D 86
++ L G T D+ + + S + + DK T++ KG+ +V+F ++A+
Sbjct: 2 YIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 61
Query: 87 GRITVDGLQVR 97
V +
Sbjct: 62 AS-GVQAQMAK 71
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 33.5 bits (76), Expect = 0.002
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 24 PPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQAL 83
P V NL +T + + F + V + + +++ D + + A
Sbjct: 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT---KNNQFQALLQYADPVSAQHAK 62
Query: 84 LK-DGR-ITVDGLQVRLDIADGKRNDNKGGFNNKQNR 118
L DG+ I +R+D + + K +NN ++R
Sbjct: 63 LSLDGQNIYNACCTLRIDFSKLTSLNVK--YNNDKSR 97
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 32.1 bits (72), Expect = 0.006
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 29 FVGNLPNGITQGDVERFFPEQK----LVSVRLVKDKETDR---FKGFCYVEFVDVENLRQ 81
FV L + +V + + V + YV ++ E+ +
Sbjct: 12 FVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALR 71
Query: 82 ALLKDGRITVDGLQVR 97
A+ + VDG ++
Sbjct: 72 AIQCVNNVVVDGRTLK 87
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 31.4 bits (70), Expect = 0.007
Identities = 11/73 (15%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
+ LP +T +V + + +K D++KG +V ++ E A+ +
Sbjct: 2 LIRGLPGDVTNQEVHDLLSDYE------LKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQ 55
Query: 89 ITVDGLQVRLDIA 101
+ ++ + +
Sbjct: 56 SRLRERELSVQLQ 68
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.6 bits (71), Expect = 0.008
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
V NLP +V + +K DR K +V ++ E + A+ +
Sbjct: 9 LVKNLPQDSNCQEVHDLLKDYD------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQ 62
Query: 89 ITVDGLQVRLDIADGKRNDNKG 110
+ G + + + G
Sbjct: 63 YSFRGKDLIVQLQPTDALLCSG 84
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 31.7 bits (71), Expect = 0.009
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 8 GYPERYGRNQKTLPTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKG 67
G + + Q+ PT ++ NLP + + ++E V + + +G
Sbjct: 5 GVQAQMAKQQEQDPT----NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRG 60
Query: 68 FCYVEFVDVENLRQAL 83
+ E +
Sbjct: 61 VGFARMESTEKCEAVI 76
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.2 bits (67), Expect = 0.027
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 7/87 (8%)
Query: 21 PTEPPYTAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLR 80
P + LP +T+ +V V + + K ++E E
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPF-----GKVTNILMLKGKNQAFLELATEEAAI 58
Query: 81 QAL--LKDGRITVDGLQVRLDIADGKR 105
+ + + + ++ K
Sbjct: 59 TMVNYYSAVTPHLRNQPIYIQYSNHKE 85
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 29.9 bits (66), Expect = 0.035
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 29 FVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVDVENLRQALLKDGR 88
V LP + D++ E G VEFV E++ A+ K
Sbjct: 4 VVSGLPPSGSWQDLKDHMREAG------DVCYADVYRDGTGVVEFVRKEDMTYAVRKLDN 57
Query: 89 ITVDGLQVRLDIADGKRNDNKGG 111
+ K + +
Sbjct: 58 TKFRSHEGETAYIRVKVDGPRSP 80
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 29.1 bits (64), Expect = 0.055
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 23 EPPY-TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFV-DVENLR 80
+PP F+ NLP + + F + + V+ F +
Sbjct: 5 QPPNQILFLTNLPEETNEMMLSMLF--NQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAK 62
Query: 81 QALLKDGRITVDGLQVRLDIA 101
+AL G +++ A
Sbjct: 63 EAL--QGFKITPTHAMKITFA 81
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.1 bits (64), Expect = 0.073
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVD--VENLRQALL 84
NLP G +++ F + L+ + F +L +
Sbjct: 12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF 71
Query: 85 KDGRITVDGLQVRLDIADGKRNDNKGGFNNKQNRGGGSGG 124
+ ++ + + A ++ D++ ++ G S G
Sbjct: 72 HHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAESGPSSG 111
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 29.0 bits (64), Expect = 0.10
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 27 TAFVGNLPNGITQGDVERFFPEQKLVSVRLVKDKETDRFKGFCYVEFVD-VENLRQAL-- 83
F G+L + + D+ F +K + R + F + +
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHG-----EIKWIDFVRGAKEGIILFKEKAKEALGKAKD 67
Query: 84 LKDGRITVDGLQVRLDIADGKRN---------DNKGGFNNKQNRG 119
+G + + +V ++ +G+ D + N +++G
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKG 112
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.9 bits (59), Expect = 0.49
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 43 ERFFPEQKLVSVRLVKDKETDRF--KGFCYVEFVDVENLRQALLK-DGRITVDGLQVRLD 99
+ + S+ + + + G +VEF V + ++A+ GR V
Sbjct: 33 DECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK-FANRVVVTK 91
Query: 100 IADGKRNDNK 109
D +
Sbjct: 92 YCDPDSYHRR 101
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 25.0 bits (54), Expect = 3.6
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 75 DVENLRQALLKDGRITVDGLQVRLDIADGK 104
DVE + + L G ++D + R + +G+
Sbjct: 15 DVEIIARETLYRGFFSLDLYRFRHRLFNGQ 44
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 24.7 bits (53), Expect = 4.6
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 22 TEPPYTAFVGNLPNGITQGDVERF--FPEQKLVSVRLVKDKETDRFKGF 68
E P + + G QGD +F +PE+ + +D D F+ F
Sbjct: 273 IETP---YEPPIQQG--QGDTSQFDKYPEEDINYGVQGEDPYADLFRDF 316
>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 73
Score = 23.6 bits (51), Expect = 4.6
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 76 VENLRQALLKDGRITVDGLQVRL 98
+ L + ++GR+ + V L
Sbjct: 45 YQALLEEWSREGRLQLAANTVAL 67
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 24.2 bits (52), Expect = 7.7
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 18 KTLPTEPPYTAFVGNLPNGITQGDVERFFPE 48
+P P T P D+E P
Sbjct: 291 DVVPVPKPATGQPAMFPASTGPQDLELSCPS 321
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.140 0.418
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,812
Number of extensions: 24418
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 83
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.9 bits)