BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13182
(194 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03577|SYDC_CAEEL Aspartate--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=drs-1 PE=3 SV=1
Length = 531
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 2 ESEAQKVSKKALKKQAKEQEKKEKKDQRKSAQQNVEESEPVEDVSARLYGKTPLIMSEKD 61
E E K+SKK L K A++ +K EK ++ QQ + ED S YG L+ S++
Sbjct: 6 EGEQPKLSKKELNKLARKAKKDEKAGEKGGNQQQAAAMDQ-EDASKDFYGSYGLVNSKEK 64
Query: 62 VDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQ 121
+F+ ++++N K VWVRGR+HT+R+KGK CF+V+R+ +T+Q + + + +SKQ
Sbjct: 65 KVLNFLKVKEINVSNATKDVWVRGRIHTTRSKGKNCFLVLRQGVYTVQVAMFMNEKISKQ 124
Query: 122 MIKYVSQIPKESILDIQAHVQATPTIVES 150
M+K+VS I KESI+D+ A + +ES
Sbjct: 125 MLKFVSSISKESIVDVYATINKVDNPIES 153
>sp|Q5R9I5|SYDC_PONAB Aspartate--tRNA ligase, cytoplasmic OS=Pongo abelii GN=DARS PE=2
SV=1
Length = 501
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 80/122 (65%)
Query: 29 RKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLH 88
RKS ++ E + ED + YG + +I S++ DR V +R L D+ VWVR R+H
Sbjct: 8 RKSQEKPREIMDAAEDYAKERYGISSMIQSQEKSDRVLVRVRDLTIQKADEVVWVRARVH 67
Query: 89 TSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIV 148
TSRAKGKQCF+V+R+Q F +Q +++VGD SKQM+K+ + I KESI+D++ V+ +
Sbjct: 68 TSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVVRKVNQKI 127
Query: 149 ES 150
ES
Sbjct: 128 ES 129
>sp|P14868|SYDC_HUMAN Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens GN=DARS PE=1
SV=2
Length = 501
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 77/114 (67%)
Query: 29 RKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLH 88
RKS ++ E + ED + YG + +I S++ DR V +R L D+ VWVR R+H
Sbjct: 8 RKSQEKPREIMDAAEDYAKERYGISSMIQSQEKPDRVLVRVRDLTIQKADEVVWVRARVH 67
Query: 89 TSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQ 142
TSRAKGKQCF+V+R+Q F +Q +++VGD SKQM+K+ + I KESI+D++ V+
Sbjct: 68 TSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVVR 121
>sp|P15178|SYDC_RAT Aspartate--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Dars
PE=2 SV=1
Length = 501
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 76/114 (66%)
Query: 29 RKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLH 88
RK ++ E + ED + YG + +I S++ DR V ++ L D+ VWVR R+H
Sbjct: 8 RKGQEKPREIVDAAEDYAKERYGVSSMIQSQEKPDRVLVRVKDLTVQKADEVVWVRARVH 67
Query: 89 TSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQ 142
TSRAKGKQCF+V+R+Q F +Q +++VGD SKQM+K+ + I KESI+D++ V+
Sbjct: 68 TSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIIDVEGIVR 121
>sp|Q922B2|SYDC_MOUSE Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus GN=Dars PE=2
SV=2
Length = 501
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 29 RKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLH 88
RK ++ E + ED + YG + +I S++ DR V ++ L D VWVR R+H
Sbjct: 8 RKGQEKPREIVDAAEDYAKERYGISSMIQSQEKPDRVLVRVKDLTVQKADDVVWVRARVH 67
Query: 89 TSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQ 142
TSRAKGKQCF+V+R+Q F +Q +++VGD SKQM+K+ + I KESI+D++ V+
Sbjct: 68 TSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIIDVEGVVR 121
>sp|Q3SYZ4|SYDC_BOVIN Aspartate--tRNA ligase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1
Length = 501
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 75/114 (65%)
Query: 29 RKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLH 88
R+S ++ E + ED + YG + +I S++ DR V I L + VWVR R+H
Sbjct: 8 RRSQEKPREIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRISDLTVQKAGEVVWVRARVH 67
Query: 89 TSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQ 142
TSRAKGKQCF+V+R+Q F +Q +++VGD SKQM+K+ + I KESI+D++ V+
Sbjct: 68 TSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVVR 121
>sp|Q75JQ1|SYDC1_DICDI Aspartate--tRNA ligase, cytoplasmic 1 OS=Dictyostelium discoideum
GN=aspS1 PE=3 SV=1
Length = 576
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 80/119 (67%), Gaps = 2/119 (1%)
Query: 33 QQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRA 92
Q+N ++ E VE+ ++ +G+ P+ S++ + R++ + QL + V K+V +R RL TSR
Sbjct: 54 QKNEKKQEQVEENNSN-WGELPMNQSKEKITREWTDVSQLTESLVGKSVLIRARLSTSRL 112
Query: 93 KGKQ-CFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVES 150
+G CFV +R+ +T+Q +++ G + SK M+++V Q+PKESI+D+QA V +T +ES
Sbjct: 113 QGANLCFVQLRDGLYTVQAVVAKGGSNSKSMVQFVGQVPKESIVDVQATVVSTSVPIES 171
>sp|P04802|SYDC_YEAST Aspartate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPS1 PE=1 SV=3
Length = 557
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 16/155 (10%)
Query: 1 MESEAQKVSKKALKKQAKEQEKKEKKDQR----KSAQQNVEESEPVEDVSARLYGKTPLI 56
+ + + +SKKALKK KEQEK+ KK++R ++ ++ E+ ED + YGK PLI
Sbjct: 22 LGEDGKPLSKKALKKLQKEQEKQRKKEERALQLEAEREAREKKAAAEDTAKDNYGKLPLI 81
Query: 57 MSEKDVDRD------FVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQ-CFVVIREQNFTIQ 109
S +D DR FV + + KD DK V R R+H +R +G F+ +R+Q IQ
Sbjct: 82 QS-RDSDRTGQKRVKFVDLDE-AKD-SDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQ 138
Query: 110 GILSVG--DTVSKQMIKYVSQIPKESILDIQAHVQ 142
G++ T+SK M+K+ + ESI+ ++ V+
Sbjct: 139 GLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVK 173
>sp|O74407|SYDC_SCHPO Aspartate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 580
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 44 DVSARLYGKTPLIMSEKDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKG-KQCFVVIR 102
D SA YG PL S R + I ++ +TV +R R++TSR +G K CF +R
Sbjct: 70 DYSAGKYGDLPLNRSTARPGRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCFFSLR 129
Query: 103 EQNFTIQGILSVG-DTVSKQMIKYVSQIPKESILDIQAHVQATPTIVES 150
++ TIQ + V DT+SKQM+K+ I ESI+ ++ V+ +P I++S
Sbjct: 130 QKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKS 178
>sp|O73630|NFKB2_XENLA Nuclear factor NF-kappa-B p100 subunit OS=Xenopus laevis GN=nfkb2
PE=2 SV=1
Length = 958
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 89 TSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIV 148
T+ K QC +++R+ N + LS+ S+ ++ Y + +L +Q H+ AT
Sbjct: 444 TTAQKEAQCQMIMRQANLRM---LSLTQRTSRALLDYATTADPRMLLAVQRHLTATQDEN 500
Query: 149 ESLPM--SILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 189
P+ +++ +V +Q+++ + IP + IL++ H+Q TP
Sbjct: 501 GDTPLHLAVIHGQSSVIEQLVQIILSIPNQQILNMSNHLQQTP 543
>sp|A9GBR2|SYN_SORC5 Asparagine--tRNA ligase OS=Sorangium cellulosum (strain So ce56)
GN=asnS PE=3 SV=1
Length = 446
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 76 YVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESIL 135
+V TV +RG L+ R+ GK F+ +R+ T+Q +++ D V ++ ++ +ES++
Sbjct: 15 HVGSTVVLRGWLYNKRSSGKLHFLELRDGFGTVQCVMAKSD-VGDEVFAAADKVTQESVI 73
Query: 136 DIQAHVQATP 145
D+ V+A P
Sbjct: 74 DVVGEVKAHP 83
>sp|A5D2C2|SYN_PELTS Asparagine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=asnS PE=3 SV=1
Length = 430
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYV 126
V I+ L +Y + V ++G L+ R+ GK CF+++R+ +QG++ + +
Sbjct: 4 VLIKHLG-NYAGQEVLIKGWLYNKRSSGKICFLIVRDGTGLVQGVVE-KKAAGEDLFSLA 61
Query: 127 SQIPKESILDIQAHVQATP 145
I +ES L ++ V+ P
Sbjct: 62 GNITQESSLMLRGTVREEP 80
>sp|Q5HAL5|SYD_EHRRW Aspartate--tRNA ligase OS=Ehrlichia ruminantium (strain
Welgevonden) GN=aspS PE=3 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.068, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 71 QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
+L ++++D+TV + G ++ R GK FV +R+ Q + + DT Q+I + +
Sbjct: 11 ELREEHIDQTVTLSGWVYRKRDHGKIIFVDLRDHYGITQLVFNDSDTTIFQLI---TTLR 67
Query: 131 KESILDIQAHVQA--TPTIVESLPMSILSVGDTVSKQMIKYVSQIPKESILDIQAHVQ 186
ES++ I+ V+A + TI E+L + V VS I+ S+I +I +Q + +
Sbjct: 68 LESVITIKGIVKARDSSTINETLDTGSIEV--IVSSINIETASEILPINIASMQDYSE 123
>sp|Q72KF7|SYN_THET2 Asparagine--tRNA ligase OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=asnS PE=3 SV=1
Length = 438
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 76 YVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESIL 135
+VD+ V +RG L+ R+KGK F+++R+ +Q + G+ V + + + +P+E+ L
Sbjct: 11 HVDQEVELRGWLYQRRSKGKIHFLILRDGTGFLQATVVQGE-VPEAVFREADHLPQETAL 69
Query: 136 DIQAHVQ 142
+ V+
Sbjct: 70 RVWGRVR 76
>sp|P54263|SYN_THET8 Asparagine--tRNA ligase OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=asnS PE=1 SV=2
Length = 438
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 76 YVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESIL 135
+VD+ V +RG L+ R+KGK F+++R+ +Q + G+ V + + + +P+E+ L
Sbjct: 11 HVDQEVELRGWLYQRRSKGKIHFLILRDGTGFLQATVVQGE-VPEAVFREADHLPQETAL 69
Query: 136 DIQAHVQ 142
+ V+
Sbjct: 70 RVWGRVR 76
>sp|A9A945|SYD_METM6 Aspartate--tRNA ligase OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=aspS PE=3 SV=1
Length = 438
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 85 GRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144
G +H+ RA GK FV++R++ TIQ ++ V ++ + ++ KE I+ I+ V A
Sbjct: 29 GWVHSIRALGKLAFVILRDREGTIQAVVP-KQKVDEETFEIAKKLGKEDIIAIRGKVVAN 87
Query: 145 ---PTIVESLPMSI 155
P E +P+ I
Sbjct: 88 EKAPKGFEVIPIEI 101
>sp|A6VHK5|SYD_METM7 Aspartate--tRNA ligase OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=aspS PE=3 SV=1
Length = 438
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 85 GRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144
G +H+ RA GK FV++R++ TIQ ++ V ++ + ++ KE I+ I+ V A
Sbjct: 29 GWVHSIRALGKLAFVILRDREGTIQAVVP-KQKVDEETFEIAKKLGKEDIIAIRGKVVAN 87
Query: 145 ---PTIVESLPMSI 155
P E +P+ I
Sbjct: 88 EKAPKGFEVIPIEI 101
>sp|Q5FG09|SYD_EHRRG Aspartate--tRNA ligase OS=Ehrlichia ruminantium (strain Gardel)
GN=aspS PE=3 SV=1
Length = 590
Score = 37.0 bits (84), Expect = 0.092, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 15/113 (13%)
Query: 71 QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
+L ++++D+TV + G ++ R GK FV +R+ Q + + DT Q+I + +
Sbjct: 11 ELREEHIDQTVTLSGWVYRKRDHGKIIFVDLRDHYGITQLVFNDSDTTIFQLI---TTLR 67
Query: 131 KESILDIQAHVQA--TPTIVESLPMSILSVGDTVSKQMIKYVSQIPKESILDI 181
ES++ I+ V+A + TI E+L DT S ++I VS I E+ DI
Sbjct: 68 LESVITIKGIVKARDSSTINETL--------DTGSIEVI--VSSINIETASDI 110
>sp|A4G0V5|SYD_METM5 Aspartate--tRNA ligase OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=aspS PE=3 SV=1
Length = 438
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 85 GRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144
G +H+ RA GK FV++R++ TIQ ++ V ++ ++ KE I+ I+ V A
Sbjct: 29 GWVHSIRALGKLAFVILRDREGTIQAVVP-KQKVDEETFAIAKKLGKEDIIAIRGKVVAN 87
Query: 145 ---PTIVESLPMSI 155
P E +P+ I
Sbjct: 88 EKAPKGFEVIPIEI 101
>sp|Q6LWU0|SYD_METMP Aspartate--tRNA ligase OS=Methanococcus maripaludis (strain S2 /
LL) GN=aspS PE=3 SV=1
Length = 438
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 85 GRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144
G +H+ RA GK FV++R++ TIQ ++ V ++ + ++ KE I+ I+ V A
Sbjct: 29 GWVHSIRALGKLAFVILRDRAGTIQAVVP-KQKVDEETFEIAKKLGKEDIVAIKGKVVAN 87
Query: 145 ---PTIVESLPMSI 155
P E +P+ I
Sbjct: 88 EKAPKGFEVIPIEI 101
>sp|A4J412|SYN_DESRM Asparagine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
GN=asnS PE=3 SV=1
Length = 429
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 69 IRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQ 128
IR L K +VD+ V ++G L+ R+ GK F+++R+ +QG+L + + ++ + +
Sbjct: 6 IRHLGK-HVDEEVSIQGWLYNKRSSGKIQFLIVRDGTGLVQGVLVKKE--APEIFELAKE 62
Query: 129 IPKESILDIQAHVQATPTIVESLPMSILSV 158
+ +ES + ++ V+ P + +++ +
Sbjct: 63 LTQESAIRLRGIVREEPRSMGGYELTVTGL 92
>sp|Q58950|SYD_METJA Aspartate--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=aspS PE=3 SV=1
Length = 438
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 81 VWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAH 140
V + G +H+ RA GK FV++R++ T+Q I++ V ++ + ++ E ++ ++
Sbjct: 25 VIIMGWVHSIRALGKIIFVILRDREGTVQ-IVAPKQKVGDELFSQIKKLGAEDVIAVKGK 83
Query: 141 VQAT---PTIVESLPMSI 155
V A P E LP+ +
Sbjct: 84 VIANEKAPNGFEILPLEL 101
>sp|Q2NHT0|SYD_METST Aspartate--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=aspS PE=3 SV=1
Length = 439
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 14/108 (12%)
Query: 70 RQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQI 129
++ + +TV V G +H R G FV+IR++N Q + + +S++M+ V
Sbjct: 15 NEIGPELAGETVKVTGWVHEIRDLGGIVFVLIRDKNGITQ-LTAPSKKLSEEMMADVRAA 73
Query: 130 PKESILDIQAHVQAT---PTIVESLPMSILSVGDTVSKQMIKYVSQIP 174
KE+I+ + VQ + P VE +P +I D ++ VSQ+P
Sbjct: 74 RKETIITLTGTVQESAKAPNGVEIIPSNI----DVIN------VSQLP 111
>sp|A6USZ9|SYD_META3 Aspartate--tRNA ligase OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=aspS PE=3 SV=1
Length = 438
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 71 QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
++N + + + + G H+ R GK F+++R++ TIQ I++ VS++ +
Sbjct: 15 EVNSEMDGQEIIIMGWNHSIRKLGKLVFIILRDREGTIQ-IVAPKQKVSEETFATAKSLG 73
Query: 131 KESILDIQAHVQAT---PTIVESLPMS--ILSVGDT 161
KE ++ I+ V A P E +P+ IL+ DT
Sbjct: 74 KEDVMAIKGKVVANEKAPAGFEVIPIEIKILNKADT 109
>sp|Q73MC2|SYD_TREDE Aspartate--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=aspS PE=3 SV=1
Length = 590
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
LNKD+ KTV + G +H R G F+ +R++ Q + V D S+ + + +
Sbjct: 13 LNKDFAGKTVVLNGWIHRKRDHGGITFLNLRDRYGLTQ--VVVDDDASEDLKALAVSLKQ 70
Query: 132 ESILDIQAHVQATP 145
E + ++ V+ P
Sbjct: 71 EFCIAVEGLVRPRP 84
>sp|Q12XU7|SYD_METBU Aspartate--tRNA ligase OS=Methanococcoides burtonii (strain DSM
6242) GN=aspS PE=3 SV=1
Length = 443
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYV 126
+ I Q+ D V WV H R G CFVV+R++ Q I V + K++
Sbjct: 14 IDIEQIGDDKVTVCGWV----HEVRDLGGICFVVVRDREGRAQ-ITLVKKKIDKEIFDAA 68
Query: 127 SQIPKESILDIQAHVQA---TPTIVESLPMSIL 156
++ +ESI+ + +A P E +P SI+
Sbjct: 69 RKLVRESIVAVTGTAKAEGKAPNGYEIIPESIV 101
>sp|O29342|SYD_ARCFU Aspartate--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=aspS
PE=3 SV=1
Length = 430
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 85 GRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHV--- 141
G +H R G F+++R++ +Q L VSKQ+ K +I +ES++ + V
Sbjct: 21 GWVHEVRDLGGLVFILLRDREGIVQITLPR-KFVSKQVFKLAKKIRRESVIAVTGEVRRE 79
Query: 142 QATPTIVESLPMSILSVGDTVSKQMIKYVSQIPKE 176
+ P VE +P SI + + + ++ ++P E
Sbjct: 80 EKAPGGVEIIPESIEVLNEADAPLPLEVTEKVPAE 114
>sp|A5GWT2|SYD_SYNR3 Aspartate--tRNA ligase OS=Synechococcus sp. (strain RCC307) GN=aspS
PE=3 SV=1
Length = 604
Score = 33.5 bits (75), Expect = 0.93, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
L D +D TV + G + R G F+ +R+++ T+Q ++V + + +
Sbjct: 9 LRSDAIDSTVLLSGWVDRRRDHGGVIFIDLRDRSGTVQ--ITVDPDLGAEAFAVAEHLRN 66
Query: 132 ESILDIQAHVQATP 145
E++L ++ V+A P
Sbjct: 67 ETVLQVEGRVRARP 80
>sp|Q8TXG4|SYD_METKA Aspartate--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=aspS PE=3 SV=1
Length = 431
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 85 GRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144
G +H R G FV++R++ +Q L V K+ + V ++ KES++ ++ VQA
Sbjct: 23 GWVHEVRDLGGIKFVLLRDRTGIVQLTLP-KQKVPKETFEKVPKLTKESVIRVEGTVQAN 81
Query: 145 ---PTIVESLP--MSILSVGDT 161
P VE +P + +LS DT
Sbjct: 82 EKAPGGVEVIPQRIEVLSESDT 103
>sp|Q04EX6|SYN_OENOB Asparagine--tRNA ligase OS=Oenococcus oeni (strain ATCC BAA-331 /
PSU-1) GN=asnS PE=3 SV=1
Length = 434
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 76 YVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESIL 135
+V +TV + L R GK F+ +R+ +QG++SVGD V + K + +ES
Sbjct: 15 FVGQTVKIGVWLRQKRGSGKIAFLQLRDGTGFMQGVVSVGD-VDEATFKLAEHLKQESSF 73
Query: 136 DIQAHVQ 142
+ +
Sbjct: 74 YVTGEIH 80
>sp|A5GPL9|SYD_SYNPW Aspartate--tRNA ligase OS=Synechococcus sp. (strain WH7803) GN=aspS
PE=3 SV=1
Length = 611
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
L K+++D +V + G + R G F+ +R++ T+Q ++V + + +
Sbjct: 9 LRKEHIDNSVQLCGWVDRRRDHGGVIFIDLRDRTGTVQ--ITVDPDLGAEAFAVAEHLRS 66
Query: 132 ESILDIQAHVQATPTIVESL 151
E++L I V+A P ESL
Sbjct: 67 ETVLQISGKVRARPA--ESL 84
>sp|B0BQ90|SYD_ACTPJ Aspartate--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype
3 (strain JL03) GN=aspS PE=3 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
LN+ +V +TV + G +H R G+ F+ IR++ +Q D + + K S +
Sbjct: 10 LNRSHVGQTVTLSGWVHRVRNLGRFIFMQIRDREGIVQVFF---DEKDEAIFKIASSLRS 66
Query: 132 ESILDIQAHVQA 143
E+ + IQ V A
Sbjct: 67 EACVQIQGEVIA 78
>sp|A3N1F3|SYD_ACTP2 Aspartate--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype
5b (strain L20) GN=aspS PE=3 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
LN+ +V +TV + G +H R G+ F+ IR++ +Q D + + K S +
Sbjct: 10 LNRSHVGQTVTLSGWVHRVRNLGRFIFMQIRDREGIVQVFF---DEKDEAIFKIASSLRS 66
Query: 132 ESILDIQAHVQA 143
E+ + IQ V A
Sbjct: 67 EACVQIQGEVIA 78
>sp|B3GY37|SYD_ACTP7 Aspartate--tRNA ligase OS=Actinobacillus pleuropneumoniae serotype
7 (strain AP76) GN=aspS PE=3 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 2.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
LN+ +V +TV + G +H R G+ F+ IR++ +Q D + + K S +
Sbjct: 10 LNRSHVGQTVTLSGWVHRVRNLGRFIFMQIRDREGIVQVFF---DEKDEAIFKIASSLRS 66
Query: 132 ESILDIQAHVQA 143
E+ + IQ V A
Sbjct: 67 EACVQIQGEVIA 78
>sp|Q7VNF0|SYD_HAEDU Aspartate--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=aspS PE=3 SV=1
Length = 589
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 72 LNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK 131
LN+ +V + V + G +H R G+ F+ IR++ +Q D + K SQ+
Sbjct: 10 LNRSHVGQAVTLSGWVHRIRNLGRFIFMQIRDREGIVQVFF---DEKDDTLFKVASQLRA 66
Query: 132 ESILDIQAHVQA 143
E+ + IQ V A
Sbjct: 67 EACVQIQGQVIA 78
>sp|A0PXN4|SYK_CLONN Lysine--tRNA ligase OS=Clostridium novyi (strain NT) GN=lysS PE=3
SV=1
Length = 510
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 79 KTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQ 138
K V V GRL + R GK F IR++ IQ + + D +++ +Y + DI
Sbjct: 70 KNVTVAGRLMSKRVHGKAGFSDIRDRYGKIQLYIKINDVGEEKLKEYKT-------FDIG 122
Query: 139 AHVQATPTIVES 150
V T T+ ++
Sbjct: 123 DFVSITGTVFKT 134
>sp|Q8E0I1|SYK_STRA5 Lysine--tRNA ligase OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=lysS PE=3 SV=1
Length = 496
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 71 QLNKDYVDK----------TVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSK 120
QLN+ Y DK T + GRL T R KGK F I+++ IQ I D+V +
Sbjct: 43 QLNEKYADKSKEDLHDIEETATIAGRLMTKRGKGKVGFAHIQDREGQIQ-IYVRKDSVGE 101
Query: 121 QMIKYVSQIPKESILDIQAHVQAT 144
+ + + L ++ V T
Sbjct: 102 ENYEIFKKADLGDFLGVEGQVMRT 125
>sp|Q8E656|SYK_STRA3 Lysine--tRNA ligase OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=lysS PE=3 SV=1
Length = 496
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 71 QLNKDYVDK----------TVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSK 120
QLN+ Y DK T + GRL T R KGK F I+++ IQ I D+V +
Sbjct: 43 QLNEKYADKSKEDLHDIEETATIAGRLMTKRGKGKVGFAHIQDREGQIQ-IYVRKDSVGE 101
Query: 121 QMIKYVSQIPKESILDIQAHVQAT 144
+ + + L ++ V T
Sbjct: 102 ENYEIFKKADLGDFLGVEGQVMRT 125
>sp|Q899G7|SYK_CLOTE Lysine--tRNA ligase OS=Clostridium tetani (strain Massachusetts /
E88) GN=lysS PE=3 SV=1
Length = 502
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 78 DKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDI 137
DK V V GRL + R GK F I ++ IQ + + D +++ +Y S DI
Sbjct: 60 DKEVTVAGRLMSKRVHGKAGFSDIHDRYGKIQLYIKINDVGEERLKEYKS-------FDI 112
Query: 138 QAHVQATPTIVES 150
V T T+ ++
Sbjct: 113 GDFVTITGTVFKT 125
>sp|Q3K1V5|SYK_STRA1 Lysine--tRNA ligase OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=lysS PE=3 SV=1
Length = 496
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 71 QLNKDYVDK----------TVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSK 120
QLN+ Y DK T + GRL T R KGK F I+++ IQ I D+V +
Sbjct: 43 QLNEKYADKSKEDLHDIEETATIAGRLMTKRGKGKVGFAHIQDREGQIQ-IYVRKDSVGE 101
Query: 121 QMIKYVSQIPKESILDIQAHVQAT 144
+ + + L ++ V T
Sbjct: 102 ENYEIFKKADLGDFLGVEGQVMRT 125
>sp|B5RM04|SYD_BORDL Aspartate--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=aspS
PE=3 SV=1
Length = 585
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 71 QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
Q+N ++K + + G + R GK F+ IR++ Q ++S ++++K SQI
Sbjct: 9 QINNKLINKKIEINGWVKKIRNHGKVTFINIRDRYDEAQILVS-----DEKLLKITSQIK 63
Query: 131 KESILDIQAHVQATP 145
E + IQ + P
Sbjct: 64 MEYCIKIQGKLNLRP 78
>sp|B5RRQ0|SYD_BORRA Aspartate--tRNA ligase OS=Borrelia recurrentis (strain A1) GN=aspS
PE=3 SV=1
Length = 583
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 71 QLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP 130
Q+N ++K + + G + R GK F+ IR++ Q ++S ++++K SQI
Sbjct: 9 QINNKLINKKIEINGWVKKIRNHGKVTFINIRDRYDEAQILVS-----DEKLLKITSQIK 63
Query: 131 KESILDIQAHVQATP 145
E + IQ + P
Sbjct: 64 MEYCIKIQGKLNLRP 78
>sp|Q6BU46|SYNC_DEBHA Asparagine--tRNA ligase, cytoplasmic OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DED81 PE=3 SV=1
Length = 552
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 7 KVSKKALKKQAKEQEKKEKKDQRKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDF 66
++S ALKK K E +KK ++++ Q EE +D +A+ + + LI ++D +
Sbjct: 56 EISASALKKAKKGAEGLKKKQEKQAKLQ--EEQRKHQDDAAKKFAEMDLISIKED---ES 110
Query: 67 VP------IRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSK 120
+P +R + +D + V V+G +H R + F+ +R+ IQ IL+ GD
Sbjct: 111 LPQAKKIKLRTV-QDNIGTRVVVQGWIHRLRLQKGLGFITLRDGTGFIQCILT-GDLAK- 167
Query: 121 QMIKYVSQIPKESILDIQAHVQATP 145
K ++ ES + I+ + P
Sbjct: 168 --CKTTHELTLESTVTIKGVINKLP 190
>sp|P67572|SYN_STAAN Asparagine--tRNA ligase OS=Staphylococcus aureus (strain N315)
GN=asnS PE=1 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 74 KDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKES 133
KD++++ V + L R+ GK F+ +R+ +QG++ V V +++ K +I +ES
Sbjct: 9 KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV-VKSEVDEEVFKLAKEIAQES 67
Query: 134 ILDIQA 139
L +
Sbjct: 68 SLYVTG 73
>sp|P67571|SYN_STAAM Asparagine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=asnS PE=1 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 74 KDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKES 133
KD++++ V + L R+ GK F+ +R+ +QG++ V V +++ K +I +ES
Sbjct: 9 KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV-VKSEVDEEVFKLAKEIAQES 67
Query: 134 ILDIQA 139
L +
Sbjct: 68 SLYVTG 73
>sp|Q6GGV5|SYN_STAAR Asparagine--tRNA ligase OS=Staphylococcus aureus (strain MRSA252)
GN=asnS PE=3 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 74 KDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKES 133
KD++++ V + L R+ GK F+ +R+ +QG++ V V +++ K +I +ES
Sbjct: 9 KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV-VKSEVDEEVFKLAKEITQES 67
Query: 134 ILDIQA 139
L +
Sbjct: 68 SLYVTG 73
>sp|P38707|SYNC_YEAST Asparagine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DED81 PE=1 SV=1
Length = 554
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 2 ESEAQKVSKKALKKQAKEQEKKEKKDQRKSAQQNVEESEPVEDVSARLYGKTPLIMSEKD 61
++E Q++S ALKK K + +KK ++ Q+ ++ + E+ + +L + L ++ K+
Sbjct: 53 DNEYQEISASALKKARKGCDGLKKKAVKQKEQELKKQQKEAENAAKQL---SALNITIKE 109
Query: 62 VDRDFVPIR-QLNKDY--VDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTV 118
+ I+ ++ Y V + V V G +H R+ K FVV+R+ + IQ +LS GD
Sbjct: 110 DESLPAAIKTRIYDSYSKVGQRVKVSGWIHRLRSNKKVIFVVLRDGSGFIQCVLS-GDLA 168
Query: 119 SKQ 121
Q
Sbjct: 169 LAQ 171
>sp|A8Z434|SYN_STAAT Asparagine--tRNA ligase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=asnS PE=3 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 74 KDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKES 133
KD++++ V + L R+ GK F+ +R+ +QG++ V V +++ K +I +ES
Sbjct: 9 KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV-VKSEVDEEVFKLAKEITQES 67
Query: 134 ILDIQA 139
L +
Sbjct: 68 SLYVTG 73
>sp|A6QH05|SYN_STAAE Asparagine--tRNA ligase OS=Staphylococcus aureus (strain Newman)
GN=asnS PE=3 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 74 KDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKES 133
KD++++ V + L R+ GK F+ +R+ +QG++ V V +++ K +I +ES
Sbjct: 9 KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV-VKSEVDEEVFKLAKEITQES 67
Query: 134 ILDIQA 139
L +
Sbjct: 68 SLYVTG 73
>sp|Q8NWP3|SYN_STAAW Asparagine--tRNA ligase OS=Staphylococcus aureus (strain MW2)
GN=asnS PE=3 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 74 KDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKES 133
KD++++ V + L R+ GK F+ +R+ +QG++ V V +++ K +I +ES
Sbjct: 9 KDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVV-VKSEVDEEVFKLAKEITQES 67
Query: 134 ILDIQA 139
L +
Sbjct: 68 SLYVTG 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,926,005
Number of Sequences: 539616
Number of extensions: 2437907
Number of successful extensions: 23345
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 279
Number of HSP's that attempted gapping in prelim test: 20404
Number of HSP's gapped (non-prelim): 2525
length of query: 194
length of database: 191,569,459
effective HSP length: 111
effective length of query: 83
effective length of database: 131,672,083
effective search space: 10928782889
effective search space used: 10928782889
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)