Query psy13182
Match_columns 194
No_of_seqs 191 out of 1294
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 22:14:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i7f_A Aspartyl-tRNA synthetas 99.9 8.9E-26 3E-30 208.4 13.2 146 42-187 24-187 (548)
2 1eov_A ASPRS, aspartyl-tRNA sy 99.8 2.4E-20 8.1E-25 170.5 13.8 127 47-173 2-138 (487)
3 3nem_A Aspartyl-tRNA synthetas 99.6 5.8E-15 2E-19 133.3 12.9 107 66-174 4-110 (438)
4 1l0w_A Aspartyl-tRNA synthetas 99.5 2.2E-14 7.6E-19 133.5 11.1 102 67-173 5-110 (580)
5 1c0a_A Aspartyl tRNA synthetas 99.5 4.1E-14 1.4E-18 131.8 12.2 104 67-174 4-113 (585)
6 1wyd_A Hypothetical aspartyl-t 99.5 3.1E-14 1.1E-18 128.2 10.9 103 67-174 5-107 (429)
7 1x54_A Asparaginyl-tRNA synthe 99.5 3E-14 1E-18 128.5 10.8 103 66-171 4-106 (434)
8 3m4p_A Ehasnrs, asparaginyl-tR 99.5 8.5E-13 2.9E-17 119.7 14.3 103 60-166 13-123 (456)
9 1n9w_A Aspartyl-tRNA synthetas 99.5 3.5E-13 1.2E-17 121.2 11.5 95 66-174 2-97 (422)
10 1e1o_A Lysyl-tRNA synthetase, 99.4 1.5E-12 5.1E-17 119.4 9.0 89 78-170 64-153 (504)
11 3a74_A Lysyl-tRNA synthetase; 99.4 1.2E-12 4.1E-17 119.7 8.2 89 78-170 56-144 (493)
12 4ex5_A Lysine--tRNA ligase; st 99.3 2.3E-12 7.7E-17 118.7 8.9 90 78-171 86-175 (529)
13 4ah6_A Aspartate--tRNA ligase, 99.3 7.5E-12 2.6E-16 117.0 9.1 104 66-174 12-121 (617)
14 3bju_A Lysyl-tRNA synthetase; 99.3 3.2E-11 1.1E-15 111.0 12.4 94 76-172 53-148 (521)
15 2xgt_A Asparaginyl-tRNA synthe 99.2 2.4E-11 8.2E-16 109.5 9.4 85 68-159 2-87 (435)
16 3i7f_A Aspartyl-tRNA synthetas 97.1 0.00072 2.5E-08 62.5 6.2 75 90-193 58-133 (548)
17 1jmc_A Protein (replication pr 97.0 0.0064 2.2E-07 49.7 10.5 119 64-189 6-151 (246)
18 4gop_C Putative uncharacterize 96.4 0.0072 2.5E-07 53.9 7.6 118 65-189 2-146 (444)
19 1ynx_A Replication factor-A pr 95.8 0.055 1.9E-06 39.4 8.5 89 64-159 2-99 (114)
20 2k50_A Replication factor A re 95.7 0.081 2.8E-06 38.2 9.0 70 65-143 6-85 (115)
21 3au7_A TIAS, putative uncharac 94.9 0.34 1.2E-05 43.0 12.1 65 76-143 282-348 (402)
22 3kdf_D Replication protein A 3 93.4 0.49 1.7E-05 35.0 8.6 63 79-144 32-95 (132)
23 4gop_B Putative uncharacterize 92.9 0.77 2.6E-05 34.1 9.1 64 79-144 37-100 (136)
24 3kf6_A Protein STN1; OB fold, 92.8 1.1 3.7E-05 34.7 10.0 64 79-144 48-112 (159)
25 3dm3_A Replication factor A; p 92.3 1.5 5.1E-05 31.4 9.6 68 65-144 4-82 (105)
26 3nem_A Aspartyl-tRNA synthetas 89.8 0.64 2.2E-05 41.5 6.7 68 93-190 15-83 (438)
27 3e0e_A Replication protein A; 89.1 4.3 0.00015 28.3 9.6 66 67-144 3-79 (97)
28 1o7i_A SSB, SSO2364, single st 88.1 5.7 0.00019 28.6 9.8 67 66-144 2-79 (119)
29 1eov_A ASPRS, aspartyl-tRNA sy 87.9 0.84 2.9E-05 41.3 6.1 72 92-191 34-108 (487)
30 2pi2_A Replication protein A 3 87.0 3 0.0001 34.5 8.6 62 80-144 73-135 (270)
31 2kqr_A Asparaginyl-tRNA synthe 86.4 0.47 1.6E-05 34.9 2.9 26 6-31 54-79 (113)
32 3kdf_A Replication protein A 1 85.8 2.9 9.9E-05 30.8 7.1 67 65-144 10-76 (121)
33 2kbn_A Conserved protein; nucl 85.3 6.5 0.00022 28.0 8.7 70 65-144 4-77 (109)
34 1x54_A Asparaginyl-tRNA synthe 85.0 1 3.4E-05 40.2 4.9 68 93-190 15-83 (434)
35 1e1o_A Lysyl-tRNA synthetase, 81.2 3.4 0.00012 37.5 7.0 67 94-190 64-132 (504)
36 1nnx_A Protein YGIW; structura 79.5 5.8 0.0002 28.7 6.5 66 68-144 27-93 (109)
37 2pi2_E Replication protein A 1 78.3 8.8 0.0003 29.0 7.4 66 65-143 31-96 (142)
38 3a74_A Lysyl-tRNA synthetase; 78.1 2.2 7.6E-05 38.6 4.7 67 94-190 56-123 (493)
39 4ex5_A Lysine--tRNA ligase; st 78.1 2.1 7.3E-05 39.1 4.6 67 94-190 86-153 (529)
40 1wyd_A Hypothetical aspartyl-t 76.0 4.8 0.00016 35.7 6.1 65 93-190 15-80 (429)
41 2hpi_A DNA polymerase III alph 72.7 6.2 0.00021 39.7 6.6 65 76-145 1040-1109(1220)
42 1c0a_A Aspartyl tRNA synthetas 72.1 4.4 0.00015 37.4 5.1 66 93-190 14-80 (585)
43 1l0w_A Aspartyl-tRNA synthetas 68.7 5.7 0.0002 36.6 5.0 64 93-189 15-79 (580)
44 1n9w_A Aspartyl-tRNA synthetas 66.6 12 0.0004 33.1 6.5 20 171-190 50-70 (422)
45 4gop_A Putative uncharacterize 66.1 23 0.00077 25.5 6.9 64 65-144 6-70 (114)
46 3m4p_A Ehasnrs, asparaginyl-tR 64.2 9.8 0.00034 34.0 5.5 67 92-190 28-96 (456)
47 2k75_A Uncharacterized protein 63.8 35 0.0012 23.9 8.9 65 65-143 2-75 (106)
48 3bju_A Lysyl-tRNA synthetase; 63.2 7.6 0.00026 35.3 4.7 67 94-190 55-125 (521)
49 3f2b_A DNA-directed DNA polyme 57.2 68 0.0023 31.7 10.4 74 66-144 7-85 (1041)
50 2xgt_A Asparaginyl-tRNA synthe 55.0 15 0.00053 32.4 5.1 64 93-189 10-75 (435)
51 3kf8_A Protein STN1; OB fold; 52.2 48 0.0016 26.8 7.2 61 79-144 86-160 (220)
52 3en2_A Probable primosomal rep 49.8 38 0.0013 23.8 5.6 38 102-145 44-81 (101)
53 3f1z_A Putative nucleic acid-b 44.9 53 0.0018 23.3 5.6 67 74-144 45-118 (133)
54 3mxn_B RECQ-mediated genome in 43.4 1.1E+02 0.0036 23.3 7.5 58 77-144 57-114 (150)
55 3fhw_A Primosomal replication 37.4 54 0.0019 23.6 4.9 38 102-145 43-80 (115)
56 1txy_A Primosomal replication 31.7 1E+02 0.0035 21.2 5.5 32 108-144 50-81 (104)
57 4ah6_A Aspartate--tRNA ligase, 31.5 20 0.00067 33.4 2.0 25 165-189 63-87 (617)
58 1gm5_A RECG; helicase, replica 30.4 38 0.0013 32.2 3.8 61 76-143 163-229 (780)
59 3k8a_A Putative primosomal rep 25.1 1.4E+02 0.0047 20.8 5.1 33 107-146 54-86 (103)
60 3tqy_A Single-stranded DNA-bin 22.6 2.1E+02 0.0073 21.3 6.2 50 104-159 54-105 (158)
61 2vw9_A Single-stranded DNA bin 22.0 2.2E+02 0.0074 20.5 6.0 52 103-159 46-98 (134)
62 1qvc_A Single stranded DNA bin 21.3 2.2E+02 0.0074 20.8 5.9 50 104-158 51-101 (145)
63 3kuv_A Fluoroacetyl coenzyme A 21.0 2.2E+02 0.0074 20.8 5.8 38 67-106 72-111 (139)
64 3qoo_A Uncharacterized protein 20.7 2.5E+02 0.0086 20.5 6.1 39 67-107 71-111 (138)
No 1
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.93 E-value=8.9e-26 Score=208.36 Aligned_cols=146 Identities=25% Similarity=0.369 Sum_probs=126.6
Q ss_pred ccchhhhccCCccccccC--CCCCCceEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEecccccc
Q psy13182 42 VEDVSARLYGKTPLIMSE--KDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVS 119 (194)
Q Consensus 42 ~~d~~~~~Yg~~~l~qs~--~~~~~~~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s 119 (194)
++|.++++||++||+||+ .+++++|+.|++|+.++.|+.|+|+||||+.|.+|+++|+.|||+++++|+|+...+..+
T Consensus 24 ~~~~~~~~yg~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~iQ~v~~~~~~~~ 103 (548)
T 3i7f_A 24 PELVSGENFKVMPMHQSQPCYKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETIS 103 (548)
T ss_dssp CCCCCCSSEEECCCCSSCGGGCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEECSSSSC
T ss_pred ccchhhhhcCcCccccccccccCCCceEEhhhcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEECCCccC
Confidence 468899999999999999 789999999999998899999999999999999999999999999999999998754578
Q ss_pred HHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeec----cccchhhcccccCCCC------------CceEeEEE
Q psy13182 120 KQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVG----DTVSKQMIKYVSQIPK------------ESILDIQA 183 (194)
Q Consensus 120 ~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~----~~is~~~~~~~~~l~~------------esi~~~~~ 183 (194)
++|++|+..|+.||+|.|+|+|.+++.++.+|+.+++||+ .++|++...+|+++.. ++|.+|.+
T Consensus 104 ~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~ 183 (548)
T 3i7f_A 104 KEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDE 183 (548)
T ss_dssp HHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC--
T ss_pred HHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999 3578887888888743 25677777
Q ss_pred EEec
Q psy13182 184 HVQA 187 (194)
Q Consensus 184 ~~~~ 187 (194)
++.+
T Consensus 184 ~~~~ 187 (548)
T 3i7f_A 184 KIAK 187 (548)
T ss_dssp ----
T ss_pred cccc
Confidence 7655
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.83 E-value=2.4e-20 Score=170.54 Aligned_cols=127 Identities=28% Similarity=0.412 Sum_probs=111.2
Q ss_pred hhccCCccccccC--CCCCCceEEccccccc-CCCcEEEEEEEEEeeecCCCe-EEEEEEecceEEEEEEeccc-c-ccH
Q psy13182 47 ARLYGKTPLIMSE--KDVDRDFVPIRQLNKD-YVDKTVWVRGRLHTSRAKGKQ-CFVVIREQNFTIQGILSVGD-T-VSK 120 (194)
Q Consensus 47 ~~~Yg~~~l~qs~--~~~~~~~~~i~~L~~~-~~g~~V~vrgrv~~~R~~Gk~-~Fl~lRd~~~~vQ~v~~~~~-~-~s~ 120 (194)
+++||++||+||+ ..+.++++.|++|... +.|+.|+|+|||++.|.+|++ +|+.|||+++.+|+|+.... . .++
T Consensus 2 ~~~yG~~~~~~s~~~~~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~ 81 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISK 81 (487)
T ss_dssp CSSEEECCCCCCCGGGCCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCH
T ss_pred CcccccccccccccccccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccH
Confidence 4689999999997 6788899999999876 889999999999999999997 99999999999999997542 2 578
Q ss_pred HHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeec----cccchhhcccccCC
Q psy13182 121 QMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVG----DTVSKQMIKYVSQI 173 (194)
Q Consensus 121 ~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~----~~is~~~~~~~~~l 173 (194)
++++++..|..|++|.|+|+|.+++.++.+++.+++||+ ..+|++...+|+++
T Consensus 82 ~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~ 138 (487)
T 1eov_A 82 NMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILL 138 (487)
T ss_dssp HHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCH
T ss_pred HHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcch
Confidence 899999999999999999999999988888999999998 24677665677653
No 3
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=99.60 E-value=5.8e-15 Score=133.33 Aligned_cols=107 Identities=13% Similarity=0.162 Sum_probs=90.2
Q ss_pred eEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecC
Q psy13182 66 FVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 145 (194)
Q Consensus 66 ~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~ 145 (194)
.+.|++|..++.|+.|+|+|||++.|.+|+++|+.|||+++.+|+++... ..+.++++++..|..||+|.|+|+|..++
T Consensus 4 t~~~~~l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~-~~~~~~~~~~~~l~~~~~V~V~G~v~~~~ 82 (438)
T 3nem_A 4 THYSSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKK-KVDPELFKLIPKLRSEDVVAVEGVVNFTP 82 (438)
T ss_dssp SCCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TSCHHHHHHGGGCCTTCEEEEEEEEEECT
T ss_pred EEEHHHcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCC-cCCHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 46788998888999999999999999999999999999999999998753 45678899999999999999999999988
Q ss_pred cccCCCceeeeeeccccchhhcccccCCC
Q psy13182 146 TIVESLPMSILSVGDTVSKQMIKYVSQIP 174 (194)
Q Consensus 146 ~~i~~~t~~~~El~~~is~~~~~~~~~l~ 174 (194)
....+.+++.-++. .++++...+|.++.
T Consensus 83 ~~~~~~el~~~~i~-vl~~~~~~lP~~~~ 110 (438)
T 3nem_A 83 KAKLGFEILPEKIV-VLNRAETPLPLDPT 110 (438)
T ss_dssp TSTTSEEEEEEEEE-EEECBCSSCSSCTT
T ss_pred CCCCcEEEEEEEEE-EEecCCCCCCCCcc
Confidence 76555555555555 57777667787754
No 4
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=99.54 E-value=2.2e-14 Score=133.48 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=85.1
Q ss_pred EEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCc
Q psy13182 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPT 146 (194)
Q Consensus 67 ~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~ 146 (194)
+++++|...+.|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+.... . +++++..|..|++|.|+|+|..++.
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~---~-~~~~~~~l~~e~~V~V~G~v~~~~~ 80 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS---P-AYATAERVRPEWVVRAKGLVRLRPE 80 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTS---T-THHHHTTCCTTCEEEEEEEEEECSS
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh---h-HHHHHhcCCCCcEEEEEEEEEcCCC
Confidence 56888988889999999999999999999999999999999999986542 2 6788899999999999999999986
Q ss_pred ccCCCceeeeeec----cccchhhcccccCC
Q psy13182 147 IVESLPMSILSVG----DTVSKQMIKYVSQI 173 (194)
Q Consensus 147 ~i~~~t~~~~El~----~~is~~~~~~~~~l 173 (194)
.+.++..+++||+ .++|++. .+|+.+
T Consensus 81 ~~~~~~~ge~Ei~~~~i~vl~~a~-~lP~~i 110 (580)
T 1l0w_A 81 PNPRLATGRVEVELSALEVLAEAK-TPPFPV 110 (580)
T ss_dssp CCTTSTTTTEEEEEEEEEEEECCC-CCSSCC
T ss_pred cCccCCCccEEEEEeEEEEeccCc-CCCCCc
Confidence 6666667777777 2466655 456555
No 5
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=99.53 E-value=4.1e-14 Score=131.82 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=83.7
Q ss_pred EEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCc
Q psy13182 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPT 146 (194)
Q Consensus 67 ~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~ 146 (194)
+.+++|...+.|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+... ..++++++..|..|++|.|+|+|..++.
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~---~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 80 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPD---RADALKLASELRNEFCIQVTGTVRARDE 80 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGG---GHHHHHHHTTCCTTCEEEEEEEEEECCT
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCC---chHHHHHHhcCCCCCEEEEEeEEEccCc
Confidence 4678888888999999999999999999999999999999999998643 2567888999999999999999999876
Q ss_pred c--cCCCceeeeeec----cccchhhcccccCCC
Q psy13182 147 I--VESLPMSILSVG----DTVSKQMIKYVSQIP 174 (194)
Q Consensus 147 ~--i~~~t~~~~El~----~~is~~~~~~~~~l~ 174 (194)
. +..+..+++||+ .+++++. .+|+.+.
T Consensus 81 ~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~ 113 (585)
T 1c0a_A 81 KNINRDMATGEIEVLASSLTIINRAD-VLPLDSN 113 (585)
T ss_dssp TTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTT
T ss_pred ccccccCCCccEEEEEeEEEEEeccC-CCCCCcc
Confidence 4 333444566666 2466654 4666554
No 6
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.53 E-value=3.1e-14 Score=128.22 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=83.6
Q ss_pred EEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCc
Q psy13182 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPT 146 (194)
Q Consensus 67 ~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~ 146 (194)
+.|++|..++.|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+.... ++++++..|..|++|.|+|+|.+++.
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~----~~~~~~~~l~~~~~v~v~G~v~~~~~ 80 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS----SAFGISQELTQESVIQVRGIVKADKR 80 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTS----TTHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh----HHHHHHHhCCCCCEEEEEEEEEecCC
Confidence 45788877789999999999999999999999999999999999987542 46778899999999999999999986
Q ss_pred ccCCCceeeeeeccccchhhcccccCCC
Q psy13182 147 IVESLPMSILSVGDTVSKQMIKYVSQIP 174 (194)
Q Consensus 147 ~i~~~t~~~~El~~~is~~~~~~~~~l~ 174 (194)
...+.+++.-++. .+|++...+|+++.
T Consensus 81 ~~~~~el~~~~~~-vl~~~~~~~P~~~~ 107 (429)
T 1wyd_A 81 APRGIELHAEEIT-LLSKAKAPLPLDVS 107 (429)
T ss_dssp SGGGEEEEEEEEE-EEECCCSSCSSCSS
T ss_pred CCccEEEEEeEEE-EeccCCCCCCCCcc
Confidence 5444454444444 57777666776554
No 7
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.53 E-value=3e-14 Score=128.47 Aligned_cols=103 Identities=16% Similarity=0.225 Sum_probs=83.5
Q ss_pred eEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecC
Q psy13182 66 FVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 145 (194)
Q Consensus 66 ~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~ 145 (194)
.+.|++|..++.|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+... ..++++++++..|..|++|.|+|+|..++
T Consensus 4 ~~~~~~l~~~~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~-~~~~~~~~~~~~l~~~~~v~v~G~v~~~~ 82 (434)
T 1x54_A 4 KVYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKN-VVGEETFEKAKKLGRESSVIVEGIVKADE 82 (434)
T ss_dssp CCCGGGCCGGGTTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHH-HHCHHHHHHHHTCCTTCEEEEEEEEEECT
T ss_pred EEEHHHhhHHhCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECC-cCCHHHHHHHhcCCCCCEEEEEEEEEecC
Confidence 35688887778999999999999999999999999999999999998642 34567888999999999999999999997
Q ss_pred cccCCCceeeeeeccccchhhccccc
Q psy13182 146 TIVESLPMSILSVGDTVSKQMIKYVS 171 (194)
Q Consensus 146 ~~i~~~t~~~~El~~~is~~~~~~~~ 171 (194)
....+.+++.-++. .+|++ ..+|.
T Consensus 83 ~~~~~~el~~~~~~-vl~~~-~~~P~ 106 (434)
T 1x54_A 83 RAPGGAEVHVEKLE-VIQAV-SEFPI 106 (434)
T ss_dssp TSGGGEEEEEEEEE-EEECC-SCCSS
T ss_pred CCCccEEEEEeEEE-EeecC-CCCCC
Confidence 65444444444444 56766 55665
No 8
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=99.45 E-value=8.5e-13 Score=119.72 Aligned_cols=103 Identities=16% Similarity=0.117 Sum_probs=78.6
Q ss_pred CCCCCceEEcccccccCCCcEEEEEEEEEeeecCC-CeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEE
Q psy13182 60 KDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKG-KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQ 138 (194)
Q Consensus 60 ~~~~~~~~~i~~L~~~~~g~~V~vrgrv~~~R~~G-k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~ 138 (194)
+.|.++++.|.++ .++.|+.|+|+|||++.|.+| +++|+.|||+++.+|+|+.... .+.. ..+..|..|++|.|+
T Consensus 13 ~~~~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~-~~~~--~~~~~l~~g~~V~V~ 88 (456)
T 3m4p_A 13 PVETPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE-LCEP--EKVKLLTRECSLEIT 88 (456)
T ss_dssp ---CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT-TTCH--HHHTTCCTTCEEEEE
T ss_pred CCCcceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc-chhh--HHhhcCCCccEEEEE
Confidence 4567889999999 568899999999999999997 5999999999999999997532 2221 235689999999999
Q ss_pred EEEEecCcccC---CCceeeeeec----cccchhh
Q psy13182 139 AHVQATPTIVE---SLPMSILSVG----DTVSKQM 166 (194)
Q Consensus 139 G~V~~~~~~i~---~~t~~~~El~----~~is~~~ 166 (194)
|+|..++.... -+|++++||+ .+++++.
T Consensus 89 G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 89 GRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp EEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC
T ss_pred eEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC
Confidence 99998875332 2455677776 2356554
No 9
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.45 E-value=3.5e-13 Score=121.20 Aligned_cols=95 Identities=24% Similarity=0.304 Sum_probs=75.3
Q ss_pred eEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCC-CccEEEEEEEEEec
Q psy13182 66 FVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIP-KESILDIQAHVQAT 144 (194)
Q Consensus 66 ~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~-rESiV~V~G~V~~~ 144 (194)
++.|++|. ++.|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+.. ..|. .||+|.|+|+|.++
T Consensus 2 ~~~~~~l~-~~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~------------~~l~~~~~~v~v~G~v~~~ 68 (422)
T 1n9w_A 2 RVLVRDLK-AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG------------LKLPLPESALRVRGLVVEN 68 (422)
T ss_dssp BCCGGGGG-GCTTSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES------------CCCCCTTCEEEEEEEEEEC
T ss_pred eEEHHHHH-hcCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc------------cccCCCCCEEEEEEEEEec
Confidence 46788887 7889999999999999999999999999999999999863 3578 99999999999999
Q ss_pred CcccCCCceeeeeeccccchhhcccccCCC
Q psy13182 145 PTIVESLPMSILSVGDTVSKQMIKYVSQIP 174 (194)
Q Consensus 145 ~~~i~~~t~~~~El~~~is~~~~~~~~~l~ 174 (194)
+....+.+++.-++. ++|++...+|+++.
T Consensus 69 ~~~~~~~el~~~~~~-vl~~~~~~~P~~~~ 97 (422)
T 1n9w_A 69 AKAPGGLEVQAKEVE-VLSPALEPTPVEIP 97 (422)
T ss_dssp TTSTTSEEEEEEEEE-EEECCCSCCC----
T ss_pred CCCCccEEEEEeEEE-EeccCCcCCCCCcc
Confidence 865445555555554 57777666776543
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=99.36 E-value=1.5e-12 Score=119.42 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=70.2
Q ss_pred CcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHH-HHhcCCCccEEEEEEEEEecCcccCCCceeee
Q psy13182 78 DKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIK-YVSQIPKESILDIQAHVQATPTIVESLPMSIL 156 (194)
Q Consensus 78 g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k-~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~ 156 (194)
|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+... ..+.++++ .+..|..|++|.|+|+|.+++. ...+++.-
T Consensus 64 ~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~-~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~--ge~ei~~~ 140 (504)
T 1e1o_A 64 NIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD-SLPEGVYNDQFKKWDLGDIIGARGTLFKTQT--GELSIHCT 140 (504)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TSSTTHHHHTGGGCCTTCEEEEEEEEEECTT--CCEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECC-cCCHHHHHHHHhcCCCCCEEEEEEEEEecCC--ceEEEEEE
Confidence 78999999999999999999999999999999998754 23445666 7789999999999999999865 33444444
Q ss_pred eeccccchhhcccc
Q psy13182 157 SVGDTVSKQMIKYV 170 (194)
Q Consensus 157 El~~~is~~~~~~~ 170 (194)
++. .++++..++|
T Consensus 141 ~i~-vl~~a~~plP 153 (504)
T 1e1o_A 141 ELR-LLTKALRPLP 153 (504)
T ss_dssp EEE-EEECCSSCCC
T ss_pred EEE-EecccCCCCC
Confidence 444 5676654455
No 11
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=99.35 E-value=1.2e-12 Score=119.75 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=70.9
Q ss_pred CcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeee
Q psy13182 78 DKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILS 157 (194)
Q Consensus 78 g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~E 157 (194)
|+.|+|+|||++.|.+|+++|+.|||+++.+|+|+... ..+.++++.+..|..|++|.|+|+|.+++. ...+++.-+
T Consensus 56 ~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~-~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~--ge~ei~~~~ 132 (493)
T 3a74_A 56 QIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQD-DVGEQQYELFKISDLGDIVGVRGTMFKTKV--GELSIKVSS 132 (493)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHH-HHHHHHHHHHHHCCTTCEEEEEEEEEECTT--CCEEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECC-cCCHHHHHHHhcCCCCCEEEEEEEEEeCCC--CcEEEEEEE
Confidence 78999999999999999999999999999999998743 234567788889999999999999999865 334444444
Q ss_pred eccccchhhcccc
Q psy13182 158 VGDTVSKQMIKYV 170 (194)
Q Consensus 158 l~~~is~~~~~~~ 170 (194)
+. .++++..++|
T Consensus 133 i~-vl~~~~~plP 144 (493)
T 3a74_A 133 YE-FLTKALRPLP 144 (493)
T ss_dssp EE-EEECCSSCCC
T ss_pred EE-EcccccCCCC
Confidence 44 5676654455
No 12
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=99.33 E-value=2.3e-12 Score=118.73 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=71.7
Q ss_pred CcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeee
Q psy13182 78 DKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILS 157 (194)
Q Consensus 78 g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~E 157 (194)
|+.|+|+|||++.|.+||++|+.|||+++.+|+|+... .++.++++++..|..|++|.|+|+|.+++. ...+++.-+
T Consensus 86 g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~-~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~--gelel~~~~ 162 (529)
T 4ex5_A 86 SLEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPA-DVGAETYDAFKKWDLGDIVAARGVLFRTNK--GELSVKCTQ 162 (529)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHH-HHCHHHHHHHHTCCTTCEEEEEEEEEECTT--SCEEEEEEE
T ss_pred CcEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECC-cCCHHHHHHHhcCCCCCEEEEEEEEEEcCC--CcEEEEEEE
Confidence 78999999999999999999999999999999998753 345677888999999999999999999754 334444444
Q ss_pred eccccchhhccccc
Q psy13182 158 VGDTVSKQMIKYVS 171 (194)
Q Consensus 158 l~~~is~~~~~~~~ 171 (194)
+. .+|++.-.+|.
T Consensus 163 i~-vLs~a~~plP~ 175 (529)
T 4ex5_A 163 LR-LLAKALRPLPD 175 (529)
T ss_dssp EE-EEECCSSCCCC
T ss_pred EE-EEecCCCCCCc
Confidence 43 46766544554
No 13
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=99.28 E-value=7.5e-12 Score=117.01 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=82.9
Q ss_pred eEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecC
Q psy13182 66 FVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 145 (194)
Q Consensus 66 ~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~ 145 (194)
.+.+++|...+.|++|+|.|||++.|.. +|+.|||+++.+|+|+... ..+.++++++..|..|++|.|+|+|..++
T Consensus 12 t~~~~~l~~~~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~iQvv~~~~-~~~~~~~~~~~~l~~e~~V~V~G~v~~~~ 87 (617)
T 4ah6_A 12 TNTCGELRSSHLGQEVTLCGWIQYRRQN---TFLVLRDFDGLVQVIIPQD-ESAASVKKILCEAPVESVVQVSGTVISRP 87 (617)
T ss_dssp SSCGGGCCGGGTTCEEEEEEEECCCCTT---TEEEEECSSCEEEEECCCS-SSSHHHHHHHHHCCSSCEEEEEEEEEECS
T ss_pred ceEHHHhHHHhCCCEEEEEEEeeeecCe---EEEEEEeCCcCEEEEEeCC-cCcHHHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 3678999888999999999999999964 5999999999999998653 34567899999999999999999999876
Q ss_pred ccc--CCCceeeeeec----cccchhhcccccCCC
Q psy13182 146 TIV--ESLPMSILSVG----DTVSKQMIKYVSQIP 174 (194)
Q Consensus 146 ~~i--~~~t~~~~El~----~~is~~~~~~~~~l~ 174 (194)
... ..+..+++||+ .+++++. ++|+.+.
T Consensus 88 ~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~ 121 (617)
T 4ah6_A 88 AGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIK 121 (617)
T ss_dssp TTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTT
T ss_pred ccccCccCCCCcEEEEEeEEEEeecCC-CCCcccc
Confidence 542 23445566766 2467766 7787653
No 14
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=99.26 E-value=3.2e-11 Score=110.97 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCCcEEEEEEEEEeeecCC-CeEEEEEEecceEEEEEEeccccccH-HHHHHHhcCCCccEEEEEEEEEecCcccCCCce
Q psy13182 76 YVDKTVWVRGRLHTSRAKG-KQCFVVIREQNFTIQGILSVGDTVSK-QMIKYVSQIPKESILDIQAHVQATPTIVESLPM 153 (194)
Q Consensus 76 ~~g~~V~vrgrv~~~R~~G-k~~Fl~lRd~~~~vQ~v~~~~~~~s~-~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~ 153 (194)
..|+.|+|+|||++.|.+| +++|+.|||+++++|+++......+. .+..+...|..|++|.|+|+|.+++. ...++
T Consensus 53 ~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~--ge~ei 130 (521)
T 3bju_A 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKK--GELSI 130 (521)
T ss_dssp CSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTT--CCEEE
T ss_pred cCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCC--CCEEE
Confidence 4578899999999999999 99999999999999999876422133 34445678999999999999999863 34455
Q ss_pred eeeeeccccchhhcccccC
Q psy13182 154 SILSVGDTVSKQMIKYVSQ 172 (194)
Q Consensus 154 ~~~El~~~is~~~~~~~~~ 172 (194)
+.-++. .+|++..++|..
T Consensus 131 ~~~~i~-~l~~~~~~lP~~ 148 (521)
T 3bju_A 131 IPYEIT-LLSPCLHMLPHL 148 (521)
T ss_dssp EEEEEE-EEECCCSCCCCC
T ss_pred EEeEEE-EeecCCCCCCCc
Confidence 444444 567766556644
No 15
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=99.23 E-value=2.4e-11 Score=109.53 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=63.1
Q ss_pred EcccccccCCCcEEEEEEEEEeeecCC-CeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCc
Q psy13182 68 PIRQLNKDYVDKTVWVRGRLHTSRAKG-KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPT 146 (194)
Q Consensus 68 ~i~~L~~~~~g~~V~vrgrv~~~R~~G-k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~ 146 (194)
+|.++. ++.|+.|+|+|||++.|.+| +++|+.|||+++.+|+|+... .+. .+.. ..|..|++|.|+|+|.+++.
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~--~~~-~~~~-~~l~~~~~v~v~G~v~~~~~ 76 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK--LCQ-TYDA-LTVNTECTVEIYGAIKEVPE 76 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG--GGS-SHHH-HHCCTTCEEEEEEEEEECC-
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc--chh-HHHH-hcCCCCCEEEEEEEEEecCC
Confidence 467774 57899999999999999997 689999999999999998732 111 1222 36999999999999999763
Q ss_pred ccCCCceeeeeec
Q psy13182 147 IVESLPMSILSVG 159 (194)
Q Consensus 147 ~i~~~t~~~~El~ 159 (194)
. .+..+++||+
T Consensus 77 ~--~~~~g~~El~ 87 (435)
T 2xgt_A 77 G--KEAPNGHELI 87 (435)
T ss_dssp -------TTEEEE
T ss_pred C--cCCCCcEEEE
Confidence 2 2233455555
No 16
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.07 E-value=0.00072 Score=62.46 Aligned_cols=75 Identities=27% Similarity=0.340 Sum_probs=59.8
Q ss_pred eecCCCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhcc
Q psy13182 90 SRAKGKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIK 168 (194)
Q Consensus 90 ~R~~Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~ 168 (194)
....|+.+.|..|.++.+.++ ++|.. .|...-.||+++... ..+++.|.+
T Consensus 58 ~~~~g~~V~v~Gwv~~~R~~gkl~Fi~--------------LrD~~g~iQ~v~~~~---------------~~~~~~~~~ 108 (548)
T 3i7f_A 58 PAMAEKTVTIRARVQAVRGKGNMVFLF--------------LRKGIYTCQALVMKS---------------ETISKEFVQ 108 (548)
T ss_dssp GGGTTCEEEEEEEEEEEEECSSEEEEE--------------EEETTEEEEEEEECS---------------SSSCHHHHH
T ss_pred hhcCCCEEEEEEEEEEEecCCCeEEEE--------------EEECCeeEEEEEECC---------------CccCHHHHH
Confidence 345688899999999988886 77765 444445899988764 246788999
Q ss_pred cccCCCCCceEeEEEEEecCCcccc
Q psy13182 169 YVSQIPKESILDIQAHVQATPTIVE 193 (194)
Q Consensus 169 ~~~~l~~esi~~~~~~~~~~~~~~~ 193 (194)
|...|+.||||.|+|+|.+++.+++
T Consensus 109 ~~~~l~~es~V~V~G~v~~~~~~~~ 133 (548)
T 3i7f_A 109 FCQKISAESICDITGIVKAVEKPIE 133 (548)
T ss_dssp HHHTCCTTEEEEEEEEEEECSSCCT
T ss_pred HHhCCCCCCEEEEEEEEEeCCcccc
Confidence 9999999999999999999987653
No 17
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=96.96 E-value=0.0064 Score=49.69 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=77.5
Q ss_pred CceEEcccccccCCCcEEEEEEEEEee---e------cCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccE
Q psy13182 64 RDFVPIRQLNKDYVDKTVWVRGRLHTS---R------AKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESI 134 (194)
Q Consensus 64 ~~~~~i~~L~~~~~g~~V~vrgrv~~~---R------~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESi 134 (194)
+.++.|.+|++.. ..+.|+|||.+. | ..|++.-+.|.|.++.+++.++.. ..-+|...|..+.+
T Consensus 6 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~-----~~~~~~~~l~~G~v 78 (246)
T 1jmc_A 6 SKVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE-----QVDKFFPLIEVNKV 78 (246)
T ss_dssp -CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHH-----HHHHHGGGCCTTCE
T ss_pred cceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChH-----HHHHhhhhcccCCE
Confidence 4578899997643 357888988764 2 234667788999999999998843 23356677889999
Q ss_pred EEEEEEEEecCcccCCCceeeeeeccc----cchh-----hccccc---------CCCCCceEeEEEEEecCC
Q psy13182 135 LDIQAHVQATPTIVESLPMSILSVGDT----VSKQ-----MIKYVS---------QIPKESILDIQAHVQATP 189 (194)
Q Consensus 135 V~V~G~V~~~~~~i~~~t~~~~El~~~----is~~-----~~~~~~---------~l~~esi~~~~~~~~~~~ 189 (194)
+.|.+.-..+..+.-..+.+++||... |... .+...+ ++...++|||-|.|....
T Consensus 79 y~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~ 151 (246)
T 1jmc_A 79 YYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGIDDLENKSKDSLVDIIGICKSYE 151 (246)
T ss_dssp EEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSCSCCCCCCCCBCCGGGGGGSCTTCEEEEEEEEEEEC
T ss_pred EEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCcccCCcceeeeEEHHHHhcccCCCceeEEEEEEEec
Confidence 999986555444444456678888721 1110 111111 134678999999987653
No 18
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.43 E-value=0.0072 Score=53.91 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=77.7
Q ss_pred ceEEcccccccCCCcEEEEEEEEEee---e------cCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEE
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTS---R------AKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESIL 135 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~---R------~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV 135 (194)
+++.|.+|++.. ..++|+|||.+. | ..|++..+.|.|.++.|+++++.. ..-+|...|..+.++
T Consensus 2 ~~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G~I~at~~~~-----~~~~f~~~l~eG~vy 74 (444)
T 4gop_C 2 PIYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSGEIKATGFND-----AVDRFYPLLQENHVY 74 (444)
T ss_dssp -CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEETH-----HHHHHTTTCCTTCEE
T ss_pred CceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCCEEEEEEeHH-----HHHHHHHheecCCEE
Confidence 356788887743 357889988742 2 235777889999999999998853 233566778889999
Q ss_pred EEEEEEEecCcccCCCceeeeeeccc----cch-----hhc--cc---cc----CCCCCceEeEEEEEecCC
Q psy13182 136 DIQAHVQATPTIVESLPMSILSVGDT----VSK-----QMI--KY---VS----QIPKESILDIQAHVQATP 189 (194)
Q Consensus 136 ~V~G~V~~~~~~i~~~t~~~~El~~~----is~-----~~~--~~---~~----~l~~esi~~~~~~~~~~~ 189 (194)
.|.+.-..+..+.-..+.+++||... |.. ..+ .| |+ +++..++|||-|+|....
T Consensus 75 ~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d~~~iP~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~ 146 (444)
T 4gop_C 75 LISKARVNIAKKQFSNLQNEYEITFENSTEIEECTDATDVPEVKYEFVRINELESVEANQQCDVIGILDSYG 146 (444)
T ss_dssp EEESCEEEECCGGGCSCCCSEEEEECTTCEEEECSCCSSSCCCCCCBCCGGGGGGSCSSCCCBEEEEEEEEC
T ss_pred EEcCCEEEecCCccccCCCCEEEEEcCCcEEEEccCcccCcceeecccCHHHHhccCCCCceEEEEEEEEcC
Confidence 99986665555444556777888721 111 011 11 11 134688999999988653
No 19
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.055 Score=39.41 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=63.9
Q ss_pred CceEEcccccccCCCcEEEEEEEEEee---------ecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccE
Q psy13182 64 RDFVPIRQLNKDYVDKTVWVRGRLHTS---------RAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESI 134 (194)
Q Consensus 64 ~~~~~i~~L~~~~~g~~V~vrgrv~~~---------R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESi 134 (194)
+.++.|.+|++... .+.|+|||.+. +..|++.-+.|.|.++.+++.++.. ..-+|...|..+.+
T Consensus 2 ~~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~-----~~~~f~~~l~eG~v 74 (114)
T 1ynx_A 2 RPIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFND-----FATKFNEILQEGKV 74 (114)
T ss_dssp CCBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHH-----HHHHHHHHSCSSSE
T ss_pred CceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCceEEEEEEECCCCeEEEEECHH-----HHHHHHhhcccCcE
Confidence 35678899977433 37777877643 2346788888999999999998753 23356677889999
Q ss_pred EEEEEEEEecCcccCCCceeeeeec
Q psy13182 135 LDIQAHVQATPTIVESLPMSILSVG 159 (194)
Q Consensus 135 V~V~G~V~~~~~~i~~~t~~~~El~ 159 (194)
+.|.+--..+....-+.+-+++||.
T Consensus 75 y~Is~~~V~~a~~~y~~~~~~yei~ 99 (114)
T 1ynx_A 75 YYVSKAKLQPAKPQFTNLTHPYELN 99 (114)
T ss_dssp EEEESCEEEECCTTTSSSSSCEEEE
T ss_pred EEECCcEEEECCCCcccCCCCEEEE
Confidence 9999865555544445567888887
No 20
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=95.67 E-value=0.081 Score=38.18 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=53.1
Q ss_pred ceEEcccccccCCCcEEEEEEEEEee---e----cCC---CeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccE
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTS---R----AKG---KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESI 134 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~---R----~~G---k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESi 134 (194)
.+..|.+|. .|+.+.+.|.|.+. | ..| .+.++.|.|.++.+.+.++.... .....|..+.+
T Consensus 6 ~~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~------~~~~~l~~G~v 76 (115)
T 2k50_A 6 RMDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI------KLLKKFREGDV 76 (115)
T ss_dssp CCCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG------GGGGTCCTTSE
T ss_pred ceEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh------hhhhcCCCCCE
Confidence 456788885 37889999999877 2 234 57999999999999998885421 11346789999
Q ss_pred EEEEEEEEe
Q psy13182 135 LDIQAHVQA 143 (194)
Q Consensus 135 V~V~G~V~~ 143 (194)
|.|.|.+..
T Consensus 77 v~i~g~~v~ 85 (115)
T 2k50_A 77 IRIKDVNIR 85 (115)
T ss_dssp EEEEEEEEC
T ss_pred EEEEeeEEc
Confidence 999998854
No 21
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.92 E-value=0.34 Score=42.99 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCcEEEEEEEEEee--ecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEe
Q psy13182 76 YVDKTVWVRGRLHTS--RAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQA 143 (194)
Q Consensus 76 ~~g~~V~vrgrv~~~--R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~ 143 (194)
.....++++|.|.+. +..|.=+|+.|.|+++.+.|++|.. ++.+-+.+..|..+..|.|.|-+..
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayep---tk~fr~~vr~L~~GD~V~v~G~v~~ 348 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEP---TKQFRNVIRLLRKGDVVEVYGSMKK 348 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGG---GTTHHHHHTTCCTTCEEEEEEEEET
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEcc---chHHHHHHhcCCCCCEEEEEEeecC
Confidence 345789999999976 5678889999999999999999864 4566678888999999999999776
No 22
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=93.41 E-value=0.49 Score=35.02 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=47.8
Q ss_pred cEEEEEEEEEeeecCCCeEEEEEEecce-EEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 79 KTVWVRGRLHTSRAKGKQCFVVIREQNF-TIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 79 ~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~-~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
..|++-|+|.+.........+.|-|+|| .+.|.......... .....+..++.|.|.|.+..-
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~---~~~~~~~~g~yVrV~G~l~~f 95 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTS---SENTVVPPETYVKVAGHLRSF 95 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC------------CCCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcc---cccccccCCCEEEEEEEEEeE
Confidence 3699999999999888889999999999 99997765422110 124567889999999998874
No 23
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.94 E-value=0.77 Score=34.11 Aligned_cols=64 Identities=5% Similarity=0.003 Sum_probs=48.4
Q ss_pred cEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 79 KTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 79 ~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
..|.+-|+|.+.+.......+.|-|+|+.+.|.+........ -.....+..++.|.|.|.+..-
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~--~~~~~~~~~g~yVrV~G~v~~f 100 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDD--SSKASEIRNNVYVRVLGTLKSF 100 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC----------CCSCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcc--cccccccCCCCEEEEEEEEEEe
Confidence 469999999999988888999999999999997765321100 0124567899999999999764
No 24
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=92.81 E-value=1.1 Score=34.68 Aligned_cols=64 Identities=6% Similarity=0.129 Sum_probs=50.2
Q ss_pred cEEEEEEEEEeeecCCCeEEEEEEecce-EEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 79 KTVWVRGRLHTSRAKGKQCFVVIREQNF-TIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 79 ~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~-~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
..|.|-|.|-..+...+..++.+-|++| .+-|++...... ..-.....+..+++|.|+|.|..-
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~--~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDF--SMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCH--HHHHHHTTCCTTCEEEEEEEEECS
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCC--CcccccccCCCCCEEEEEEEEEee
Confidence 4699999999999888899999999999 599988875321 111223457889999999999764
No 25
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=92.29 E-value=1.5 Score=31.37 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred ceEEcccccccCCCcEEEEEEEEEeee-------cCC---CeEEEEEEecceEEEEEEeccccccHHHHHHHh-cCCCcc
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTSR-------AKG---KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVS-QIPKES 133 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~R-------~~G---k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~-~l~rES 133 (194)
.+..|.+|.+ +..+.|.|+|.... ..| ++.=+.|.|.++.+.+.+..+. +. .|..++
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~---------a~~~l~~Gd 71 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNL---------TDIDVGRGD 71 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGG---------GGSCCCTTC
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcc---------cccccCCCC
Confidence 5788999976 36799999997663 233 4566899999999998877542 11 578999
Q ss_pred EEEEEEEEEec
Q psy13182 134 ILDIQAHVQAT 144 (194)
Q Consensus 134 iV~V~G~V~~~ 144 (194)
+|.|.|.+...
T Consensus 72 vv~i~g~vk~~ 82 (105)
T 3dm3_A 72 YVRVRGYIREG 82 (105)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEEc
Confidence 99999988876
No 26
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=89.81 E-value=0.64 Score=41.53 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=47.2
Q ss_pred CCCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhccccc
Q psy13182 93 KGKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVS 171 (194)
Q Consensus 93 ~Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~ 171 (194)
.|+.+-|..|.++.+.++ ++|.. .+...-.||.++... .++..+.++..
T Consensus 15 ~g~~V~v~Gwv~~~R~~g~~~Fi~--------------LrD~~g~iQ~v~~~~----------------~~~~~~~~~~~ 64 (438)
T 3nem_A 15 NGQKVKVAGWVWEVKDLGGIKFLW--------------IRDRDGIVQITAPKK----------------KVDPELFKLIP 64 (438)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEE--------------EEETTEEEEEEEETT----------------TSCHHHHHHGG
T ss_pred CCCEEEEEEEEEEEecCCCeEEEE--------------EEECCeeEEEEEeCC----------------cCCHHHHHHHh
Confidence 477788888888877776 66654 222222477777553 23445556666
Q ss_pred CCCCCceEeEEEEEecCCc
Q psy13182 172 QIPKESILDIQAHVQATPT 190 (194)
Q Consensus 172 ~l~~esi~~~~~~~~~~~~ 190 (194)
.|+.||+|.|+|+|.+++.
T Consensus 65 ~l~~~~~V~V~G~v~~~~~ 83 (438)
T 3nem_A 65 KLRSEDVVAVEGVVNFTPK 83 (438)
T ss_dssp GCCTTCEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEEEEEeCCC
Confidence 8999999999999998764
No 27
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=89.06 E-value=4.3 Score=28.26 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=48.4
Q ss_pred EEcccccccCCCcEEEEEEEEEeee-------cCC---CeEEEEEEecceEEEEEEeccccccHHHHHHHh-cCCCccEE
Q psy13182 67 VPIRQLNKDYVDKTVWVRGRLHTSR-------AKG---KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVS-QIPKESIL 135 (194)
Q Consensus 67 ~~i~~L~~~~~g~~V~vrgrv~~~R-------~~G---k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~-~l~rESiV 135 (194)
.+|.+|.+ |..+.+.|+|.+.. ..| .+.=+.+.|.++.+-+.+..+. +. .|..+++|
T Consensus 3 ~kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~---------~~~~i~~Gdvv 70 (97)
T 3e0e_A 3 YKISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL---------ADFEVKKGDIA 70 (97)
T ss_dssp ECGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG---------GGCCCCTTCEE
T ss_pred eEHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCc---------cccccCCCCEE
Confidence 35788865 46799999997663 123 3566899999999999887541 12 57899999
Q ss_pred EEEEEEEec
Q psy13182 136 DIQAHVQAT 144 (194)
Q Consensus 136 ~V~G~V~~~ 144 (194)
.|.|.+...
T Consensus 71 ~i~g~v~~~ 79 (97)
T 3e0e_A 71 EVSGYVKQG 79 (97)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEc
Confidence 999988665
No 28
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=88.09 E-value=5.7 Score=28.55 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=48.3
Q ss_pred eEEcccccccCCC-cEEEEEEEEEee---e----cCC--CeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEE
Q psy13182 66 FVPIRQLNKDYVD-KTVWVRGRLHTS---R----AKG--KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESIL 135 (194)
Q Consensus 66 ~~~i~~L~~~~~g-~~V~vrgrv~~~---R----~~G--k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV 135 (194)
|.+|.+|.+ | ..|.+.|.|.+. | ..| ...-+.|.|.++++.+.+.... +..+..+++|
T Consensus 2 f~~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~---------~~~~~~G~vv 69 (119)
T 1o7i_A 2 EEKVGNLKP---NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH---------AGSIKEGQVV 69 (119)
T ss_dssp BCCGGGCCT---TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG---------TTCCCTTCEE
T ss_pred cEEHHHCcC---CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh---------hhcCCCCCEE
Confidence 456888865 4 358888888765 3 335 4688899999999998887541 2346789999
Q ss_pred EEE-EEEEec
Q psy13182 136 DIQ-AHVQAT 144 (194)
Q Consensus 136 ~V~-G~V~~~ 144 (194)
.|. |.+..-
T Consensus 70 ~i~~g~v~~~ 79 (119)
T 1o7i_A 70 KIENAWTTAF 79 (119)
T ss_dssp EEEEEEEEEE
T ss_pred EEEeEEEEEe
Confidence 999 777654
No 29
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=87.87 E-value=0.84 Score=41.30 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=50.4
Q ss_pred cCCCeEEEEEEecceEEEE--EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccc-cchhhcc
Q psy13182 92 AKGKQCFVVIREQNFTIQG--ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDT-VSKQMIK 168 (194)
Q Consensus 92 ~~Gk~~Fl~lRd~~~~vQ~--v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~-is~~~~~ 168 (194)
..|+.+.|..|.++.+.++ ++|.. .+...-.||.++..... . ++..+.+
T Consensus 34 ~~g~~V~v~GwV~~~R~~g~~l~Fi~--------------LrD~~g~iQvv~~~~~~--------------~~~~~~~~~ 85 (487)
T 1eov_A 34 DSDKEVLFRARVHNTRQQGATLAFLT--------------LRQQASLIQGLVKANKE--------------GTISKNMVK 85 (487)
T ss_dssp TTTCEEEEEEEEEEEEECSSSEEEEE--------------EEETTEEEEEEEECCSS--------------SSSCHHHHH
T ss_pred cCCCEEEEEEEEEEeeccCCccEEEE--------------EEECCccEEEEEecccc--------------ccccHHHHH
Confidence 3477788888888888775 36665 23333368877765311 1 4556667
Q ss_pred cccCCCCCceEeEEEEEecCCcc
Q psy13182 169 YVSQIPKESILDIQAHVQATPTI 191 (194)
Q Consensus 169 ~~~~l~~esi~~~~~~~~~~~~~ 191 (194)
+...|+.||+|.|+|+|.+++.+
T Consensus 86 ~~~~l~~e~~V~V~G~v~~~~~~ 108 (487)
T 1eov_A 86 WAGSLNLESIVLVRGIVKKVDEP 108 (487)
T ss_dssp HHTTCCTTCEEEEEEEEEECSSC
T ss_pred HHhcCCCCCEEEEEEEEEeCCCC
Confidence 77789999999999999998753
No 30
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=86.97 E-value=3 Score=34.53 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=46.9
Q ss_pred EEEEEEEEEeeecCCCeEEEEEEecce-EEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 80 TVWVRGRLHTSRAKGKQCFVVIREQNF-TIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 80 ~V~vrgrv~~~R~~Gk~~Fl~lRd~~~-~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
.|++-|+|.++...+...-+.|.|+++ +|-|.+........ .....+..+.+|.|.|.|..-
T Consensus 73 ~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~---~~~~~~~~G~yVrV~G~v~~f 135 (270)
T 2pi2_A 73 QVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTS---SENTVVPPETYVKVAGHLRSF 135 (270)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC----------CCCCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCccc---chhhcCCCCCEEEEEEEEEec
Confidence 699999999998888889999999999 89997775421100 113457889999999999764
No 31
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=86.38 E-value=0.47 Score=34.88 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.7
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHH
Q psy13182 6 QKVSKKALKKQAKEQEKKEKKDQRKS 31 (194)
Q Consensus 6 ~~~sk~alkK~~K~~~k~~kka~k~a 31 (194)
.++||++|||+.|..+.+.+|+++++
T Consensus 54 ~~~skSaLKKa~K~~~~~~kK~~k~~ 79 (113)
T 2kqr_A 54 EAASKTALKKSWKRYEQEMLKNEKVA 79 (113)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999877654
No 32
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=85.82 E-value=2.9 Score=30.75 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=45.2
Q ss_pred ceEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
+++.-.-| ..+.|+.|++-|+|...+..|+.+.+.--|+ +.+++.+... .. . .....|.|.|+|...
T Consensus 10 pRVn~s~L-~~fvgk~VrivGkV~~~~~~g~~~~l~s~Dg-~~Vtv~l~~p--~~-------~--~l~~~vEViG~V~~~ 76 (121)
T 3kdf_A 10 SRINAGML-AQFIDKPVCFVGRLEKIHPTGKMFILSDGEG-KNGTIELMEP--LD-------E--EISGIVEVVGRVTAK 76 (121)
T ss_dssp EEECGGGG-GGGTTCEEEEEEEEEEECTTSSEEEEECTTS-CEEEEECSSC--CS-------S--CCCSEEEEEEEECTT
T ss_pred ceECHHHH-HhhCCCeEEEEEEEEEEcCCCCEEEEEeCCC-CEEEEEeCCC--CC-------c--ccCcEEEEEEEECCC
Confidence 34555556 4689999999999999998888755544443 3566655431 10 0 235699999998853
No 33
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=85.31 E-value=6.5 Score=27.96 Aligned_cols=70 Identities=4% Similarity=0.017 Sum_probs=50.0
Q ss_pred ceEEcccccccCCCcEEEEEEEEEeeec--CCC-eEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEE-EE
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTSRA--KGK-QCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQ-AH 140 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~R~--~Gk-~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~-G~ 140 (194)
++.+|.||.+. +..|.+.|+|..... .|+ ...+.|-|.|+++-+.+-.... +..|..+++|.|. |.
T Consensus 4 ~~~kI~dl~~~--~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~--------~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 4 QLTKIVDIVEN--GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE--------LPLLEQGESYLLRSVV 73 (109)
T ss_dssp CBCCTTTCCST--TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC--------CCCCCTTCEEEEEEEE
T ss_pred CceEHHHCCCC--CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc--------ccccCCCCEEEEEEEE
Confidence 45678888652 667899998877643 233 3678999999999988775311 3456889999999 56
Q ss_pred EEec
Q psy13182 141 VQAT 144 (194)
Q Consensus 141 V~~~ 144 (194)
+..-
T Consensus 74 v~~~ 77 (109)
T 2kbn_A 74 VGEY 77 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 34
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=84.97 E-value=1 Score=40.16 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=45.6
Q ss_pred CCCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhccccc
Q psy13182 93 KGKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVS 171 (194)
Q Consensus 93 ~Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~ 171 (194)
.|+.+.|..|.++.+.++ ++|.. .+...-.||.++... .++..+.++..
T Consensus 15 ~~~~V~v~G~v~~~R~~g~~~F~~--------------lrD~~g~iQ~v~~~~----------------~~~~~~~~~~~ 64 (434)
T 1x54_A 15 DGKKVRLAGWVYTNMRVGKKIFLW--------------IRDSTGIVQAVVAKN----------------VVGEETFEKAK 64 (434)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEE--------------EEETTEEEEEEECHH----------------HHCHHHHHHHH
T ss_pred CCCEEEEEEEEEEEecCCCeEEEE--------------EEECCEEEEEEEECC----------------cCCHHHHHHHh
Confidence 477778888877777665 55654 222222377766442 23444445556
Q ss_pred CCCCCceEeEEEEEecCCc
Q psy13182 172 QIPKESILDIQAHVQATPT 190 (194)
Q Consensus 172 ~l~~esi~~~~~~~~~~~~ 190 (194)
.|+.||+|.|.|+|.+++.
T Consensus 65 ~l~~~~~v~v~G~v~~~~~ 83 (434)
T 1x54_A 65 KLGRESSVIVEGIVKADER 83 (434)
T ss_dssp TCCTTCEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEEEEEecCC
Confidence 8999999999999998864
No 35
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=81.23 E-value=3.4 Score=37.50 Aligned_cols=67 Identities=16% Similarity=0.057 Sum_probs=43.4
Q ss_pred CCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhcc-ccc
Q psy13182 94 GKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIK-YVS 171 (194)
Q Consensus 94 Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~-~~~ 171 (194)
|+.+.|..|.++.+.++ ++|.. .+...-.||.++... .++..+-. +..
T Consensus 64 ~~~V~v~Gwv~~~R~~gk~~F~~--------------LrD~sg~iQvv~~~~----------------~~~~~~~~~~~~ 113 (504)
T 1e1o_A 64 NIEVSVAGRMMTRRIMGKASFVT--------------LQDVGGRIQLYVARD----------------SLPEGVYNDQFK 113 (504)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEE--------------EEETTEEEEEEEETT----------------TSSTTHHHHTGG
T ss_pred CCEEEEEEEEEEEecCCCcEEEE--------------EEECCeeEEEEEECC----------------cCCHHHHHHHHh
Confidence 66677777777777765 56654 222223688877653 12222222 335
Q ss_pred CCCCCceEeEEEEEecCCc
Q psy13182 172 QIPKESILDIQAHVQATPT 190 (194)
Q Consensus 172 ~l~~esi~~~~~~~~~~~~ 190 (194)
.|+.+|||.|.|+|.+++.
T Consensus 114 ~l~~g~~V~V~G~v~~~~~ 132 (504)
T 1e1o_A 114 KWDLGDIIGARGTLFKTQT 132 (504)
T ss_dssp GCCTTCEEEEEEEEEECTT
T ss_pred cCCCCCEEEEEEEEEecCC
Confidence 7999999999999998754
No 36
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=79.54 E-value=5.8 Score=28.68 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=45.3
Q ss_pred EcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHH-hcCCCccEEEEEEEEEec
Q psy13182 68 PIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYV-SQIPKESILDIQAHVQAT 144 (194)
Q Consensus 68 ~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~-~~l~rESiV~V~G~V~~~ 144 (194)
.+.+......+..|.++|.|...-..-. +.+||.++.|++-+... .|. ..+..+.-|.|.|.|-+.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG~I~VeId~~--------~w~g~~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISDDL---YVFKDASGTINVDIDHK--------RWNGVTVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEETTE---EEEEETTEEEEEECCGG--------GSTTCCCCTTSCEEEEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCCCe---EEEECCCccEEEEEChh--------hcCCcccCCCCEEEEEEEECCC
Confidence 3444434456788999999976543333 45699999988755432 122 346789999999999874
No 37
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=78.30 E-value=8.8 Score=29.00 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=43.8
Q ss_pred ceEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEe
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQA 143 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~ 143 (194)
+++.-.-| ..+.|+.|++-|+|...-..|+.+.+.--| +..+++.+... .+ -.....|.|.|+|..
T Consensus 31 pRVN~s~L-~~fvGk~VriVGkV~~~~~~G~~~~l~s~D-g~~VtV~l~~p--L~---------~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 31 SRINAGML-AQFIDKPVCFVGRLEKIHPTGKMFILSDGE-GKNGTIELMEP--LD---------EEISGIVEVVGRVTA 96 (142)
T ss_dssp EEECGGGG-GGSTTCEEEEEEEEEEECTTSSEEEEECTT-SCEEEEECSSC--CS---------SCCCSEEEEEEEECT
T ss_pred ceECHHHH-HhhCCCEEEEEEEEeEEcCCCCEEEEEeCC-CcEEEEEeCCC--CC---------ccCCCEEEEEEEECC
Confidence 44555555 668999999999999986677665443332 34666665421 00 034779999999965
No 38
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=78.12 E-value=2.2 Score=38.61 Aligned_cols=67 Identities=15% Similarity=0.011 Sum_probs=43.8
Q ss_pred CCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhcccccC
Q psy13182 94 GKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVSQ 172 (194)
Q Consensus 94 Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~~ 172 (194)
|+.+.|..|.++.+.++ ++|.. .+...-.||.++... .++..+.+....
T Consensus 56 ~~~V~v~Gwv~~~R~~gk~~F~~--------------LrD~sg~iQvv~~~~----------------~~~~~~~~~~~~ 105 (493)
T 3a74_A 56 QIEVAVAGRIMTKRGMGKAGFAH--------------IQDVTGQIQIYVRQD----------------DVGEQQYELFKI 105 (493)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEE--------------EEETTEEEEEEEEHH----------------HHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEEecCCCcEEEE--------------EEECCEeEEEEEECC----------------cCCHHHHHHHhc
Confidence 66777777877777765 56654 222223688777543 123333333357
Q ss_pred CCCCceEeEEEEEecCCc
Q psy13182 173 IPKESILDIQAHVQATPT 190 (194)
Q Consensus 173 l~~esi~~~~~~~~~~~~ 190 (194)
|+.+|+|.|.|+|.+++.
T Consensus 106 l~~g~~v~V~G~v~~~~~ 123 (493)
T 3a74_A 106 SDLGDIVGVRGTMFKTKV 123 (493)
T ss_dssp CCTTCEEEEEEEEEECTT
T ss_pred CCCCCEEEEEEEEEeCCC
Confidence 999999999999998754
No 39
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=78.09 E-value=2.1 Score=39.15 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=43.2
Q ss_pred CCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhcccccC
Q psy13182 94 GKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVSQ 172 (194)
Q Consensus 94 Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~~ 172 (194)
|+.+-|..|..+.+.++ ++|.. .+...-.||.++... .++..+.++...
T Consensus 86 g~~V~v~GwV~~~R~~Gk~~Fi~--------------LrD~sg~iQvv~~~~----------------~~~~~~~~~~~~ 135 (529)
T 4ex5_A 86 SLEVAIAGRMMLKRVMGKASFAT--------------VQDGSGQIQFFVTPA----------------DVGAETYDAFKK 135 (529)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEE--------------EECSSCEEEEEECHH----------------HHCHHHHHHHHT
T ss_pred CcEEEEEEEEEeeecCCCeEEEE--------------EEeCCeeEEEEEECC----------------cCCHHHHHHHhc
Confidence 66677777777777665 55654 222223677666543 233333344457
Q ss_pred CCCCceEeEEEEEecCCc
Q psy13182 173 IPKESILDIQAHVQATPT 190 (194)
Q Consensus 173 l~~esi~~~~~~~~~~~~ 190 (194)
|+.+|||.|+|+|.+++.
T Consensus 136 l~~gd~V~V~G~v~~t~~ 153 (529)
T 4ex5_A 136 WDLGDIVAARGVLFRTNK 153 (529)
T ss_dssp CCTTCEEEEEEEEEECTT
T ss_pred CCCCCEEEEEEEEEEcCC
Confidence 999999999999998763
No 40
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=75.98 E-value=4.8 Score=35.70 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=42.6
Q ss_pred CCCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhccccc
Q psy13182 93 KGKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVS 171 (194)
Q Consensus 93 ~Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~ 171 (194)
.|+.+.|..|.++.+.++ ++|.. .+...-.||.++.... .+.++..
T Consensus 15 ~~~~V~v~Gwv~~~R~~g~~~F~~--------------lrD~~g~iQ~v~~~~~-------------------~~~~~~~ 61 (429)
T 1wyd_A 15 DGKEVIWAGWVHLLRDLGGKKFII--------------LRDKTGLGQVVVDKNS-------------------SAFGISQ 61 (429)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEE--------------EEETTEEEEEEECTTS-------------------TTHHHHT
T ss_pred CCCEEEEEEEEEEEecCCCeEEEE--------------EEECCeeEEEEEeCCh-------------------HHHHHHH
Confidence 477777877877777665 55654 2222223777664421 1223345
Q ss_pred CCCCCceEeEEEEEecCCc
Q psy13182 172 QIPKESILDIQAHVQATPT 190 (194)
Q Consensus 172 ~l~~esi~~~~~~~~~~~~ 190 (194)
.|+.||+|.|.|+|.+++.
T Consensus 62 ~l~~~~~v~v~G~v~~~~~ 80 (429)
T 1wyd_A 62 ELTQESVIQVRGIVKADKR 80 (429)
T ss_dssp TCCTTCEEEEEEEEEECSS
T ss_pred hCCCCCEEEEEEEEEecCC
Confidence 7999999999999998874
No 41
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=72.71 E-value=6.2 Score=39.67 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCCcEEEEEEEEEeeec----CC-CeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecC
Q psy13182 76 YVDKTVWVRGRLHTSRA----KG-KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 145 (194)
Q Consensus 76 ~~g~~V~vrgrv~~~R~----~G-k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~ 145 (194)
..|..|++.|.|...+. .| .++|+.|-|.++.+-+++|.. .+-++...|....++.|.|.|....
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~-----~~~~~~~~l~~~~~~~v~G~v~~~~ 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGR-----AYEGVSPKLKEDIPLLVLAEVEKGE 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC------------------CTTCEEEEEEEEC---
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHH-----HHHHHHHHhccCCEEEEEEEEEECC
Confidence 35788999999877663 34 479999999999999988854 1223445567889999999997643
No 42
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=72.07 E-value=4.4 Score=37.38 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhccccc
Q psy13182 93 KGKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVS 171 (194)
Q Consensus 93 ~Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~ 171 (194)
.|+.+.|..|.++.+-++ ++|.. .+...-.||.++... . ..+.++..
T Consensus 14 ~g~~V~l~GwV~~~R~~G~~~Fi~--------------LrD~~g~iQvv~~~~----------------~--~~~~~~~~ 61 (585)
T 1c0a_A 14 VGQQVTLCGWVNRRRDLGSLIFID--------------MRDREGIVQVFFDPD----------------R--ADALKLAS 61 (585)
T ss_dssp TTCEEEEEEEEEEEEECSSCEEEE--------------EEETTEEEEEEECGG----------------G--HHHHHHHT
T ss_pred CCCEEEEEEEEEEEecCCCcEEEE--------------EEECCeeEEEEEeCC----------------c--hHHHHHHh
Confidence 366677777777666654 45544 222222467665432 0 12333445
Q ss_pred CCCCCceEeEEEEEecCCc
Q psy13182 172 QIPKESILDIQAHVQATPT 190 (194)
Q Consensus 172 ~l~~esi~~~~~~~~~~~~ 190 (194)
.|+.||+|.|+|+|.+++.
T Consensus 62 ~l~~e~~V~V~G~v~~~~~ 80 (585)
T 1c0a_A 62 ELRNEFCIQVTGTVRARDE 80 (585)
T ss_dssp TCCTTCEEEEEEEEEECCT
T ss_pred cCCCCCEEEEEeEEEccCc
Confidence 7999999999999998754
No 43
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=68.65 E-value=5.7 Score=36.65 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=40.0
Q ss_pred CCCeEEEEEEecceEEEE-EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhccccc
Q psy13182 93 KGKQCFVVIREQNFTIQG-ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYVS 171 (194)
Q Consensus 93 ~Gk~~Fl~lRd~~~~vQ~-v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~~ 171 (194)
.|+.+.|..|.++.+-++ ++|.. .+...-.||.++... . . +.++..
T Consensus 15 ~g~~V~l~GwV~~~R~~G~~~Fi~--------------LrD~~g~iQvv~~~~----------------~--~-~~~~~~ 61 (580)
T 1l0w_A 15 VGEEVVLEGWVNRRRDLGGLIFLD--------------LRDREGLVQLVAHPA----------------S--P-AYATAE 61 (580)
T ss_dssp TTCEEEEEEEEEEEEECSSCEEEE--------------EEETTEEEEEEECTT----------------S--T-THHHHT
T ss_pred CCCEEEEEEEEEEEecCCCeEEEE--------------EEECCeeEEEEEeCC----------------h--h-HHHHHh
Confidence 466677777777666654 45544 222222477665432 1 1 233445
Q ss_pred CCCCCceEeEEEEEecCC
Q psy13182 172 QIPKESILDIQAHVQATP 189 (194)
Q Consensus 172 ~l~~esi~~~~~~~~~~~ 189 (194)
.|+.||+|.|.|+|.+++
T Consensus 62 ~l~~e~~V~V~G~v~~~~ 79 (580)
T 1l0w_A 62 RVRPEWVVRAKGLVRLRP 79 (580)
T ss_dssp TCCTTCEEEEEEEEEECS
T ss_pred cCCCCcEEEEEEEEEcCC
Confidence 799999999999999875
No 44
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=66.64 E-value=12 Score=33.08 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=17.5
Q ss_pred cCCC-CCceEeEEEEEecCCc
Q psy13182 171 SQIP-KESILDIQAHVQATPT 190 (194)
Q Consensus 171 ~~l~-~esi~~~~~~~~~~~~ 190 (194)
..|+ .||+|.|.|+|.+++.
T Consensus 50 ~~l~~~~~~v~v~G~v~~~~~ 70 (422)
T 1n9w_A 50 LKLPLPESALRVRGLVVENAK 70 (422)
T ss_dssp CCCCCTTCEEEEEEEEEECTT
T ss_pred cccCCCCCEEEEEEEEEecCC
Confidence 4689 9999999999998864
No 45
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=66.09 E-value=23 Score=25.51 Aligned_cols=64 Identities=13% Similarity=0.319 Sum_probs=41.1
Q ss_pred ceEEcccccccCCCcEEEEEEEEEeeecCCCeEEEEEEe-cceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEe
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIRE-QNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQA 143 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~Fl~lRd-~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~ 143 (194)
+++.-..| ..+.|+.|++-|+|...+. +. +.+.. ..+.+.+.+... .. +.....|.|.|+|..
T Consensus 6 pRVn~~~L-~~~~g~~VrivGkV~~~~g--~~--~~l~s~d~~~Vtv~l~~~--~~---------~~~~~~vEViG~V~~ 69 (114)
T 4gop_A 6 PLINSSML-GQYVGQTVRIVGKVHKVTG--NT--LLMQTSDLGNVEIAMTPD--SD---------VSSSTFVEVTGKVSD 69 (114)
T ss_dssp CEECTTTG-GGGTTSEEEEEEEEEEEET--TE--EEEECTTSCEEEEECCSS--CC---------GGGCSEEEEEEEECT
T ss_pred ceECHHHH-HhhCCCeEEEEEEEeeeCC--CE--EEEEeCCCCEEEEEeCCC--CC---------cccCcEEEEEEEEcC
Confidence 34555556 4589999999999999885 33 33342 223566554432 11 124689999999875
Q ss_pred c
Q psy13182 144 T 144 (194)
Q Consensus 144 ~ 144 (194)
.
T Consensus 70 ~ 70 (114)
T 4gop_A 70 A 70 (114)
T ss_dssp T
T ss_pred C
Confidence 4
No 46
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=64.22 E-value=9.8 Score=33.98 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=42.7
Q ss_pred cCCCeEEEEEEecceEEEE--EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhccc
Q psy13182 92 AKGKQCFVVIREQNFTIQG--ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKY 169 (194)
Q Consensus 92 ~~Gk~~Fl~lRd~~~~vQ~--v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~ 169 (194)
..|+.+-|..|.++.+.++ ++|.. .+...-.||.++.... ++... .
T Consensus 28 ~~g~~V~v~Gwv~~~R~~Gk~~~Fi~--------------LrD~sg~iQvv~~~~~----------------~~~~~--~ 75 (456)
T 3m4p_A 28 LEGKLVTFKGWAYHIRKARKTLIFVE--------------LRDGSGYCQCVIFGKE----------------LCEPE--K 75 (456)
T ss_dssp CCSSEEEEEEEEEEEECCSSSEEEEE--------------EECSSCEEEEEEESTT----------------TTCHH--H
T ss_pred cCCCEEEEEEEEEEEecCCCceEEEE--------------EEeCCccEEEEEeccc----------------chhhH--H
Confidence 4477788888888877773 77765 2222224777765421 11111 1
Q ss_pred ccCCCCCceEeEEEEEecCCc
Q psy13182 170 VSQIPKESILDIQAHVQATPT 190 (194)
Q Consensus 170 ~~~l~~esi~~~~~~~~~~~~ 190 (194)
...|+.||+|.|+|+|.+++.
T Consensus 76 ~~~l~~g~~V~V~G~v~~~~~ 96 (456)
T 3m4p_A 76 VKLLTRECSLEITGRLNAYAG 96 (456)
T ss_dssp HTTCCTTCEEEEEEEEECCCS
T ss_pred hhcCCCccEEEEEeEEEecCC
Confidence 237999999999999997754
No 47
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=63.77 E-value=35 Score=23.89 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=45.2
Q ss_pred ceEEcccccccCCCcEEEEEEEEEee-----ecCCC---eEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEE
Q psy13182 65 DFVPIRQLNKDYVDKTVWVRGRLHTS-----RAKGK---QCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILD 136 (194)
Q Consensus 65 ~~~~i~~L~~~~~g~~V~vrgrv~~~-----R~~Gk---~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~ 136 (194)
++.+|.||.+. ...|.+.++|... +..|+ +.-+.|-|.|+++.+.+.... |..+++|.
T Consensus 2 ~~~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~------------l~~Gdvv~ 67 (106)
T 2k75_A 2 DLVKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ------------LQDSDVVR 67 (106)
T ss_dssp CBCCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC------------CCTTEEEE
T ss_pred CcEEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc------------cCCCCEEE
Confidence 35678888653 2346666666543 33564 677889999999888776541 68999999
Q ss_pred EE-EEEEe
Q psy13182 137 IQ-AHVQA 143 (194)
Q Consensus 137 V~-G~V~~ 143 (194)
|. |.+..
T Consensus 68 i~ng~v~~ 75 (106)
T 2k75_A 68 IDNARVAQ 75 (106)
T ss_dssp EEEEEEEE
T ss_pred EEeeEEeE
Confidence 99 76654
No 48
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=63.23 E-value=7.6 Score=35.32 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=42.0
Q ss_pred CCeEEEEEEecceEEEE--EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeecccc-c-hhhccc
Q psy13182 94 GKQCFVVIREQNFTIQG--ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTV-S-KQMIKY 169 (194)
Q Consensus 94 Gk~~Fl~lRd~~~~vQ~--v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~i-s-~~~~~~ 169 (194)
|+.+.|..|..+.+.++ ++|.. .+...-.||.++... .+ + ..+..+
T Consensus 55 ~~~V~v~Grv~~~R~~gkk~~F~~--------------LrD~sg~iQvv~~~~----------------~~~~~~~~~~~ 104 (521)
T 3bju_A 55 DITLKVAGRIHAKRASGGKLIFYD--------------LRGEGVKLQVMANSR----------------NYKSEEEFIHI 104 (521)
T ss_dssp SCCEEEEEEEEEEEESSSSEEEEE--------------EEETTEEEEEEEEGG----------------GSSCHHHHHHH
T ss_pred CcEEEEEEEEEEEecCCCCcEEEE--------------EEECCEEEEEEEECC----------------ccCCHHHHHHH
Confidence 55567777777766665 55654 222224678777653 11 1 123333
Q ss_pred ccCCCCCceEeEEEEEecCCc
Q psy13182 170 VSQIPKESILDIQAHVQATPT 190 (194)
Q Consensus 170 ~~~l~~esi~~~~~~~~~~~~ 190 (194)
...|+.+|||.|.|+|.+++.
T Consensus 105 ~~~l~~gd~V~V~G~v~~t~~ 125 (521)
T 3bju_A 105 NNKLRRGDIIGVQGNPGKTKK 125 (521)
T ss_dssp HHHCCTTCEEEEEEEEEECTT
T ss_pred HhcCCCCCEEEEEEEEEecCC
Confidence 346999999999999998763
No 49
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=57.16 E-value=68 Score=31.73 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=52.6
Q ss_pred eEEcccccccCCCcEEEEEEEEEeeec----CCC-eEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEE
Q psy13182 66 FVPIRQLNKDYVDKTVWVRGRLHTSRA----KGK-QCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAH 140 (194)
Q Consensus 66 ~~~i~~L~~~~~g~~V~vrgrv~~~R~----~Gk-~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~ 140 (194)
.+.+.++.. ....|.|.|.|..... .|+ +..+.+-|.+..+.|-.|... ++..+....|..+..|.|+|.
T Consensus 7 ~~~~~~~~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~---~~~~~~~~~~~~g~~~~~~g~ 81 (1041)
T 3f2b_A 7 VRRLETIVE--EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD---KEDAELMSGVKKGMWVKVRGS 81 (1041)
T ss_dssp CBCGGGCCS--CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS---HHHHHHHHTCCTTCEEEEEEE
T ss_pred cccHHHhhc--ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc---cchHHHHhcCCCCCEEEEEEE
Confidence 355666654 2457999999976533 354 567788899988888666542 233455678999999999999
Q ss_pred EEec
Q psy13182 141 VQAT 144 (194)
Q Consensus 141 V~~~ 144 (194)
+.-.
T Consensus 82 ~~~d 85 (1041)
T 3f2b_A 82 VQND 85 (1041)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8765
No 50
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=54.99 E-value=15 Score=32.39 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=39.7
Q ss_pred CCCeEEEEEEecceEEEE--EEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcccCCCceeeeeeccccchhhcccc
Q psy13182 93 KGKQCFVVIREQNFTIQG--ILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTIVESLPMSILSVGDTVSKQMIKYV 170 (194)
Q Consensus 93 ~Gk~~Fl~lRd~~~~vQ~--v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~i~~~t~~~~El~~~is~~~~~~~ 170 (194)
.|+.+-|..|.++.+.++ ++|.. .+...-.||.++... ++.....
T Consensus 10 ~~~~V~v~Gwv~~~R~~Gk~~~Fi~--------------LrD~~g~iQvv~~~~-----------------~~~~~~~-- 56 (435)
T 2xgt_A 10 RNERVCIKGWIHRMRRQGKSLMFFI--------------LRDGTGFLQVLLMDK-----------------LCQTYDA-- 56 (435)
T ss_dssp TTSEEEEEEEEEEEEECTTSEEEEE--------------EECSSCEEEEEEEGG-----------------GGSSHHH--
T ss_pred CCCEEEEEEEEEEecccCCCcEEEE--------------EEECCceEEEEECCc-----------------chhHHHH--
Confidence 466777777877777773 66664 222222377766521 0111111
Q ss_pred cCCCCCceEeEEEEEecCC
Q psy13182 171 SQIPKESILDIQAHVQATP 189 (194)
Q Consensus 171 ~~l~~esi~~~~~~~~~~~ 189 (194)
..|+.||+|.|+|+|.+++
T Consensus 57 ~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 57 LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp HHCCTTCEEEEEEEEEECC
T ss_pred hcCCCCCEEEEEEEEEecC
Confidence 2699999999999999865
No 51
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=52.22 E-value=48 Score=26.81 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=40.8
Q ss_pred cEEEEEEEEEeeecCC--------CeEEEEEEecceE---EEEEEeccccccHHHHHHHh---cCCCccEEEEEEEEEec
Q psy13182 79 KTVWVRGRLHTSRAKG--------KQCFVVIREQNFT---IQGILSVGDTVSKQMIKYVS---QIPKESILDIQAHVQAT 144 (194)
Q Consensus 79 ~~V~vrgrv~~~R~~G--------k~~Fl~lRd~~~~---vQ~v~~~~~~~s~~m~k~~~---~l~rESiV~V~G~V~~~ 144 (194)
+.|.|.|.|-..+-.- ...|+.+-|.++. +.|.+.... ...... ....+.+|.|.|++..-
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~-----~~~~gl~l~~~~~G~iV~VkG~i~~~ 160 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ-----FKEVGLTLDKKNYGKIVELEGEIYNW 160 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH-----HHTTTCCTTSCCTTCEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH-----hhccCccccccCCCeEEEEEEEEEee
Confidence 4688999998776443 4599999999974 666554321 111111 13468999999999874
No 52
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=49.82 E-value=38 Score=23.83 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=28.1
Q ss_pred EecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecC
Q psy13182 102 REQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 145 (194)
Q Consensus 102 Rd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~ 145 (194)
|+-...++|+++.. .-+++..+..++.|.|+|.+....
T Consensus 44 r~~~f~i~vv~wGk------~AE~~~~~~kGs~V~VeGrL~trs 81 (101)
T 3en2_A 44 RQVEFSIEALGAGK------MASVLDRIAPGTVLECVGFLARKH 81 (101)
T ss_dssp EEEEEEEEEEEETH------HHHHHTTSCTTCEEEEEEEEEECC
T ss_pred EeeeEEEEEEEEhH------HHHHHhhcCCCCEEEEEEEEEeCc
Confidence 44455588888853 334556789999999999999764
No 53
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=44.87 E-value=53 Score=23.29 Aligned_cols=67 Identities=27% Similarity=0.393 Sum_probs=43.5
Q ss_pred ccCCCcEEEEEEEEEeeecC----CCeEEE-EEEecceEE--EEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 74 KDYVDKTVWVRGRLHTSRAK----GKQCFV-VIREQNFTI--QGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 74 ~~~~g~~V~vrgrv~~~R~~----Gk~~Fl-~lRd~~~~v--Q~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
+++.|+-|.+||-+..+|.. |..-|| ..||..... ...+....+.|. .+..|..+|+.+|.|.|...
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsa----dvealsngsvativgqvhqv 118 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSA----DVEALSNGSVATIVGQVHQV 118 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHH----HHTTCCTTSEEEEEEECCCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcch----hhHhhcCCceeeEeeeeeee
Confidence 56789999999998888754 455555 467765431 112222223332 35778999999999987665
No 54
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=43.38 E-value=1.1e+02 Score=23.30 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCcEEEEEEEEEeeecCCCeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 77 VDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 77 ~g~~V~vrgrv~~~R~~Gk~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
.=..||+.|.|... ..| .++|+|+++++-+-. .+ .+.+. --.|..+..|-|-|.+...
T Consensus 57 ~~s~VWmQG~VV~~-~~g---~~~LdDgTG~~~v~g-~~-~vp~g----~p~l~~G~YVMV~G~v~~~ 114 (150)
T 3mxn_B 57 DLAAVWMQGRVVMA-DRG---EARLRDPSGDFSVRG-LE-RVPRG----RPCLVPGKYVMVMGVVQAC 114 (150)
T ss_dssp ECSEEEEEEEEEEE-ETT---EEEEEETTEEEEEEC-GG-GSCCC----SCCCSTTCEEEEEEEEEEC
T ss_pred eeEEEEEEeEEEEe-CCC---eEEEECCCceEEEee-cc-ccCCC----CcccCCCCEEEEEEEEEec
Confidence 34579999999885 333 378999998744311 11 11110 0124578999999998864
No 55
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=37.38 E-value=54 Score=23.57 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=27.5
Q ss_pred EecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecC
Q psy13182 102 REQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATP 145 (194)
Q Consensus 102 Rd~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~ 145 (194)
|+....++|+++.. .-+.+..|..++.|.|+|.+....
T Consensus 43 r~~~~~i~vv~~Gk------~AE~~~~l~kGs~V~VeGrL~trs 80 (115)
T 3fhw_A 43 RRVELTISAVALGD------LALLLADTPLGTEMQVQGFLAPAR 80 (115)
T ss_dssp CEEEEEEEEEEETH------HHHHHTTCCTTCEEEEEEEEEESS
T ss_pred eeeeEEEEEEEEhH------HHHhhhccCCCCEEEEEEEEEECC
Confidence 44444588888853 223346789999999999999864
No 56
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=31.73 E-value=1e+02 Score=21.24 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=22.7
Q ss_pred EEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEec
Q psy13182 108 IQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQAT 144 (194)
Q Consensus 108 vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~ 144 (194)
+.|+++... .. ..+..|..++.|.|+|.+...
T Consensus 50 ~~vv~~g~~--Ae---~~~~~l~KG~~V~V~G~L~~~ 81 (104)
T 1txy_A 50 MPVIVSGHE--NQ---AITHSITVGSRITVQGFISCH 81 (104)
T ss_dssp EEEEEESST--TH---HHHTTCCTTCEEEEEEEEEC-
T ss_pred EEEEEEhHH--HH---HHHhhCCCCCEEEEEEEEEec
Confidence 778887541 11 224568999999999999976
No 57
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=31.54 E-value=20 Score=33.40 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.0
Q ss_pred hhcccccCCCCCceEeEEEEEecCC
Q psy13182 165 QMIKYVSQIPKESILDIQAHVQATP 189 (194)
Q Consensus 165 ~~~~~~~~l~~esi~~~~~~~~~~~ 189 (194)
.+.++...|+.||+|.|+|+|.+.+
T Consensus 63 ~~~~~~~~l~~e~~V~V~G~v~~~~ 87 (617)
T 4ah6_A 63 SVKKILCEAPVESVVQVSGTVISRP 87 (617)
T ss_dssp HHHHHHHHCCSSCEEEEEEEEEECS
T ss_pred HHHHHHhcCCCCCEEEEEEEEEeCC
Confidence 4445566799999999999998754
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=30.44 E-value=38 Score=32.16 Aligned_cols=61 Identities=8% Similarity=0.044 Sum_probs=42.3
Q ss_pred CCCcEEEEEEEEEeeec--CC--CeEEEEEEecceEEEEEEeccccccHHHHHHHhcCCC--ccEEEEEEEEEe
Q psy13182 76 YVDKTVWVRGRLHTSRA--KG--KQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPK--ESILDIQAHVQA 143 (194)
Q Consensus 76 ~~g~~V~vrgrv~~~R~--~G--k~~Fl~lRd~~~~vQ~v~~~~~~~s~~m~k~~~~l~r--ESiV~V~G~V~~ 143 (194)
..|+.+++.|.|.+... .| +..-+.+.|+++.++++.|...-. ...+.. +..+.|.|.+..
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~-------~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYL-------QTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTT-------HHHHHTTCSSCEEEEEEECS
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHHH-------HhhCccCCCCEEEEEEEEEE
Confidence 45788999999876532 23 345567789989999888853211 123356 999999999976
No 59
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=25.09 E-value=1.4e+02 Score=20.79 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=25.0
Q ss_pred EEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCc
Q psy13182 107 TIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPT 146 (194)
Q Consensus 107 ~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~ 146 (194)
.+.|+++.. ..+ +..|..++-|.|+|.+....-
T Consensus 54 ~i~vv~~gk------~Ae-~~~l~KG~~v~veGrL~~rs~ 86 (103)
T 3k8a_A 54 EIPARILGR------QAE-EWQYRQGDCATVEGFLAQKSR 86 (103)
T ss_dssp EEEEEEEHH------HHH-HSTTCTTCEEEEEEEEEESSS
T ss_pred EEEEEEEhH------Hhh-hhccCCCCEEEEEEEEEECcc
Confidence 367777753 234 666999999999999998754
No 60
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=22.62 E-value=2.1e+02 Score=21.25 Aligned_cols=50 Identities=6% Similarity=-0.116 Sum_probs=32.4
Q ss_pred cceEEEEEEeccccccHHHHH-HHhcCCCccEEEEEEEEEecCc-ccCCCceeeeeec
Q psy13182 104 QNFTIQGILSVGDTVSKQMIK-YVSQIPKESILDIQAHVQATPT-IVESLPMSILSVG 159 (194)
Q Consensus 104 ~~~~vQ~v~~~~~~~s~~m~k-~~~~l~rESiV~V~G~V~~~~~-~i~~~t~~~~El~ 159 (194)
.+..+.|+++.. ..+ .+..|.+++.|.|+|.|....- ...|.....+||.
T Consensus 54 ~t~~i~vv~wg~------~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~ 105 (158)
T 3tqy_A 54 RTEWHRIAFFNR------LAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEII 105 (158)
T ss_dssp EEEEEEEEEETH------HHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEE
T ss_pred eeEEEEEEEEhH------HHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEE
Confidence 344577888753 122 3345899999999999987643 2345555555655
No 61
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=22.01 E-value=2.2e+02 Score=20.49 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=32.5
Q ss_pred ecceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcc-cCCCceeeeeec
Q psy13182 103 EQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTI-VESLPMSILSVG 159 (194)
Q Consensus 103 d~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~-i~~~t~~~~El~ 159 (194)
+.+..+.|+++.. ..-..+..|..++.|.|+|.+....-. ..|-....+||.
T Consensus 46 ~~t~~~~v~~wg~-----~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~ 98 (134)
T 2vw9_A 46 EEVCFIDARLFGR-----TAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTIT 98 (134)
T ss_dssp EEEEEEEEEEEHH-----HHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred cccEEEEEEEEcH-----HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEE
Confidence 3455678888753 111233458999999999999886532 345555555554
No 62
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=21.29 E-value=2.2e+02 Score=20.79 Aligned_cols=50 Identities=12% Similarity=-0.096 Sum_probs=33.0
Q ss_pred cceEEEEEEeccccccHHHHHHHhcCCCccEEEEEEEEEecCcc-cCCCceeeeee
Q psy13182 104 QNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQAHVQATPTI-VESLPMSILSV 158 (194)
Q Consensus 104 ~~~~vQ~v~~~~~~~s~~m~k~~~~l~rESiV~V~G~V~~~~~~-i~~~t~~~~El 158 (194)
.+..+.|+++.. ..-..+..|.+++.|.|+|.+....-. ..|-....+||
T Consensus 51 ~t~~~~v~~wg~-----~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei 101 (145)
T 1qvc_A 51 QTEWHRVVLFGK-----LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV 101 (145)
T ss_dssp CCEEEEEEEETH-----HHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred ccEEEEEEEehH-----HHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEE
Confidence 355678888853 111233458999999999999886532 35666666666
No 63
>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase FLK, hot DOG folding, thioeste hydrolase; 1.50A {Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3p2q_A 3p2r_A 3p2s_A 3kv7_A 3kv8_A 3kvz_A* 3kw1_A* 3kx7_A 3kx8_A 3kvi_A 3p3i_A 3p3f_A
Probab=21.05 E-value=2.2e+02 Score=20.82 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=27.4
Q ss_pred EEcccccccCCCcEEEEEEEEEeeecCCCeEE--EEEEecce
Q psy13182 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCF--VVIREQNF 106 (194)
Q Consensus 67 ~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~~F--l~lRd~~~ 106 (194)
..+.++.+...|..|++.+++..+ .|+..+ +.++|...
T Consensus 72 v~v~Hlapt~~G~~V~~~a~l~~v--~gr~~~f~v~a~d~~~ 111 (139)
T 3kuv_A 72 ICVTHTAATPPGLTVTVTAELRSV--EGRRLSWRVSAHDGVD 111 (139)
T ss_dssp EEEECCSCCCTTSEEEEEEEEEEE--ETTEEEEEEEEECSSS
T ss_pred EEEEEccCCCCCCEEEEEEEEEEE--CCCEEEEEEEEEECCE
Confidence 567788888899999999999887 344433 44555543
No 64
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, hot-DOG superfamily; 1.25A {Thermanaerovibrio acidaminovorans}
Probab=20.66 E-value=2.5e+02 Score=20.47 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=29.0
Q ss_pred EEcccccccCCCcEEEEEEEEEeeecCCCe--EEEEEEecceE
Q psy13182 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQ--CFVVIREQNFT 107 (194)
Q Consensus 67 ~~i~~L~~~~~g~~V~vrgrv~~~R~~Gk~--~Fl~lRd~~~~ 107 (194)
..+.++.+...|..|++.+++..+. |+. .-+.++|+.+.
T Consensus 71 v~v~Hlapt~~G~~V~~~a~v~~v~--gr~v~f~v~a~d~~~~ 111 (138)
T 3qoo_A 71 SEVHNLAPAVLGDDVTFTVTVDRVE--GNRVVLSMKADDPHGP 111 (138)
T ss_dssp EEEEECSCCBTTCEEEEEEEEEEEE--TTEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEEc--CCEEEEEEEEEECCeE
Confidence 5667888889999999999998885 443 33555666655
Done!