RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13182
(194 letters)
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 123 bits (310), Expect = 2e-33
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 22 KKEKKDQRKSAQQNVEESEPVEDVSARLYGKTPLIMSEKD--VDRDFVPIRQLNKDYVDK 79
++K V + E VS + P+ S+ + I +L +K
Sbjct: 4 SMAATQEKKPQLPPVVLLKTPELVSGENFKVMPMHQSQPCYKTGLKYTEIEELVPAMAEK 63
Query: 80 TVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQIPKESILDIQA 139
TV +R R+ R KG F+ +R+ +T Q ++ +T+SK+ +++ +I ESI DI
Sbjct: 64 TVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITG 123
Query: 140 HVQATPTIVES 150
V+A +E
Sbjct: 124 IVKAVEKPIEK 134
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 93.9 bits (234), Expect = 7e-23
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 46 SARLYGKTPLIMSEK--DVDRDFVPIRQLNK-DYVDKTVWVRGRLHTSRAKGKQ-CFVVI 101
+ YGK PLI S + V L++ DK V R R+H +R +G F+ +
Sbjct: 1 AKDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTL 60
Query: 102 REQNFTIQGILSVGD--TVSKQMIKYVSQIPKESILDIQAHVQATPTIVES 150
R+Q IQG++ T+SK M+K+ + ESI+ ++ V+ ++S
Sbjct: 61 RQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 88.8 bits (221), Expect = 3e-21
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 69 IRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQ 128
++ ++ + V V G + + G F+ IR+++ +Q V ++ K + +
Sbjct: 7 SSEITEELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITA-PKKKVDPELFKLIPK 65
Query: 129 IPKESILDIQAHVQATP 145
+ E ++ ++ V TP
Sbjct: 66 LRSEDVVAVEGVVNFTP 82
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 81.1 bits (201), Expect = 2e-18
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 69 IRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYVSQ 128
I + +Y K V G +H R G + F+++R++ Q ++ +
Sbjct: 7 IADVTPEYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKN----SSAFGISQE 62
Query: 129 IPKESILDIQAHVQATPT 146
+ +ES++ ++ V+A
Sbjct: 63 LTQESVIQVRGIVKADKR 80
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 68.4 bits (168), Expect = 5e-14
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYV 126
V +R L K +V + V + G LH R G+ F+++R+++ +Q +
Sbjct: 3 VLVRDL-KAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKL--------- 52
Query: 127 SQIPKESILDIQAHVQATPT 146
ES L ++ V
Sbjct: 53 --PLPESALRVRGLVVENAK 70
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 55.7 bits (135), Expect = 1e-09
Identities = 16/79 (20%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQGILSVGDTVSKQMIKYV 126
V +++ + K V + G ++T+ GK+ F+ IR+ +Q +++ + V ++ +
Sbjct: 5 VYCQEVKPELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVA-KNVVGEETFEKA 63
Query: 127 SQIPKESILDIQAHVQATP 145
++ +ES + ++ V+A
Sbjct: 64 KKLGRESSVIVEGIVKADE 82
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 44.1 bits (105), Expect = 9e-06
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 67 VPIRQLNKDYVDKTVWVRGRLHTSRAKGKQ-CFVVIREQNFTIQGILSVGDTVSKQMIKY 125
V IR L + ++ V ++G +H R +GK F ++R+ +Q +L
Sbjct: 1 VKIRDL-VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLM-DKLCQTYDALT 58
Query: 126 VSQIPKESILDIQAHVQATP 145
V+ E ++I ++ P
Sbjct: 59 VNT---ECTVEIYGAIKEVP 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-05
Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 46/196 (23%)
Query: 19 EQEKKEKKDQRKSAQQNVEESEPVEDVSARLY----------------GKTPLIMSEKDV 62
EQ + D + A+ NV +P + L GKT + DV
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDV 170
Query: 63 DRDFVPIRQLNKDYVDKTVWVR-GRLHTSRA--KGKQCFVVIREQNFTIQGILSVGDTVS 119
+ +++ K W+ ++ + Q + + N+T + S +
Sbjct: 171 CLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 120 KQMIKY------VSQIPKES--ILDIQAHVQATPTIVESLPMS--IL------SVGDTVS 163
I+ S+ + +L +VQ + +S IL V D +S
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLL---NVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 164 KQMIKYVSQIPKESIL 179
++S L
Sbjct: 283 AATTTHISLDHHSMTL 298
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 43.0 bits (102), Expect = 2e-05
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 69 IRQLNKDYVDKTVWVRGRLHTSRAKGKQ-CFVVIREQNFTIQGILSVGDTVSKQMIKYVS 127
IR K V +G + R K FV +R+ + Q ++ + + +K ++
Sbjct: 22 IRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLT 80
Query: 128 QIPKESILDIQAHVQATP 145
+ E L+I + A
Sbjct: 81 R---ECSLEITGRLNAYA 95
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.005
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 4 EAQKVSKKALKKQAK-----------EQEKKEKKDQRKSAQQNVEESEPVEDV 45
A KV ++ +++AK EQ +K K + R + + ++ + D+
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD--ADI 153
Score = 32.1 bits (72), Expect = 0.075
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 1 MESEAQKVSKKALKKQAKEQEKKEKKDQRK------SAQQNVEE 38
+ E + + +K ++Q K ++ + + A++++EE
Sbjct: 80 LTQEPESI-RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.029
Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 52/185 (28%)
Query: 33 QQNVEESE--PVEDVSARLYGKTPLIM-SEKDVDRDFVP--IRQLNKDYVDKTVWVRGRL 87
+ ++E +E P +P M S ++ ++ V + + N ++ ++
Sbjct: 325 EDSLENNEGVP-----------SP--MLSISNLTQEQVQDYVNKTNS-HLPA----GKQV 366
Query: 88 HTSRAKGKQCFVV------IREQNFTIQGI-LSVGDTVSKQMIKYVSQIPKESI--LDIQ 138
S G + VV + N T++ G S+ I + + K S L +
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--IPFSERKLKFSNRFLPVA 424
Query: 139 A--H----VQATPTIVESLPMSILSVGDTVSKQMIKYVSQIPKESIL---DIQAHVQA-T 188
+ H V A+ I + L + +S +K + QIP D++ + +
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFN---AKDI-----QIPVYDTFDGSDLRVLSGSIS 476
Query: 189 PTIVE 193
IV+
Sbjct: 477 ERIVD 481
Score = 32.7 bits (74), Expect = 0.082
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 25/96 (26%)
Query: 109 QGIL-----SVGDT------VSKQMIKYVSQI--------PKESILDIQAHVQATPTIVE 149
QG++ + D+ ++ I + I P S+ + ++ + E
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL--PPSILEDSLENNE 332
Query: 150 SLPMSILSVGDTVSKQMIKYVSQI----PKESILDI 181
+P +LS+ + +Q+ YV++ P ++I
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Score = 26.9 bits (59), Expect = 5.4
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 6 QKV---SKKALKKQAKE-QEKKEKK-DQRKSAQQNVEESEPVEDVSARLY 50
Q V +AL K +K D + +++S +E+V L+
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIE-----LQKSLSLEEVEGHLF 1896
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 31.4 bits (72), Expect = 0.19
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 60 KDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQ 109
D+ + + + V + GR+ R GK F +++ + IQ
Sbjct: 68 ADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSGQIQ 117
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 30.5 bits (70), Expect = 0.29
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 60 KDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQ 109
+++ + + + + V V GR+ T R GK F I++ IQ
Sbjct: 38 EELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQ 87
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 29.8 bits (68), Expect = 0.54
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 60 KDVDRDFVPIRQLNKDYVDKTVWVRGRLHTSRAKGKQCFVVIREQNFTIQ 109
+ +F + ++ V V GR+ T R GK FV +++ IQ
Sbjct: 46 DQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQ 95
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release
channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2,
disease mutation; 1.70A {Mus musculus} PDB: 3im5_A
3im7_A 3qr5_A 3ila_A 3hsm_A
Length = 217
Score = 27.9 bits (61), Expect = 2.2
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 6 QKVSKKALKKQAKEQEKKEKKDQRKSAQQNVEESEPVEDVSARLYGKTPLIM 57
Q +S +AL++ +K + + + ++ LYG L+
Sbjct: 71 QSLSVRALQEMLANTVEKSEGQVDVEKWKFMMKTAQGGGHRTLLYGHAILLR 122
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.6 bits (61), Expect = 2.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 4 EAQKVSKKALKKQAKEQEKKEKKDQRK 30
+ QK KK L Q K+Q + E++ +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEE 128
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 28.0 bits (63), Expect = 2.3
Identities = 16/72 (22%), Positives = 24/72 (33%)
Query: 7 KVSKKALKKQAKEQEKKEKKDQRKSAQQNVEESEPVEDVSARLYGKTPLIMSEKDVDRDF 66
KV KK L++ + + S E P+ D S + LI D R
Sbjct: 522 KVDKKQLRQWLASRASAGRASIPASKAALREVILPLLDESDEPFDDDNLIDYGLDSVRMM 581
Query: 67 VPIRQLNKDYVD 78
+ K + D
Sbjct: 582 ALAARWRKVHGD 593
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 26.9 bits (59), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 3 SEAQKVSKKALKKQAKEQEKKEKKDQR 29
E QK+ KK +K+Q + +K EKK ++
Sbjct: 95 IEEQKIVKKVVKEQTEAAKKSEKKAKK 121
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 27.4 bits (60), Expect = 3.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 4 EAQKVSKKALKKQAKEQEKKEKKDQRK 30
+AQ ++K + K+ K + K+E + K
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLK 162
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.3 bits (60), Expect = 4.0
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 4 EAQKVSKKALKKQAKEQEKKEKKDQRK 30
Q+ K + K+ K+ K+++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAE 138
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 26.7 bits (59), Expect = 5.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 2 ESEAQKVSKKALKKQAKEQEKKEKKDQRKSAQ 33
E Q+ S+K ++ KK KK + K +
Sbjct: 344 NKEFQEASEKGYPVATPQKSKKAKKPKNKGTK 375
>2wzl_A Phosphoprotein; viral protein, rabies, virion, chaperone,
nucleoprotein, RNA replication; 2.10A {Mokola virus}
Length = 303
Score = 26.8 bits (59), Expect = 5.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 134 ILDIQAHVQATPTIVESLP--MSILSVGDTVSKQM 166
I QAH+Q P V+SLP MS L + D +
Sbjct: 32 IESNQAHLQGEPLYVDSLPEDMSRLRIEDKSRRTK 66
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 6.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 21 EKKEKKDQRKSAQQNVEESEPVEDVSARL 49
EK+ K + S + ++S P + A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 25.8 bits (56), Expect = 6.5
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 4 EAQKVSKKALKKQAKEQEKKEKKDQR 29
E K+ K+ + + K +KK++ ++
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 25.8 bits (57), Expect = 6.5
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 4 EAQKVSKKALKKQAKEQEKKEKKDQRK 30
K + ++ E++ + K
Sbjct: 132 SVVAREMKIVTERRAEKKADSRVTYSK 158
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 26.4 bits (59), Expect = 7.3
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 144 TPTIVESLPMSILSVGDTVSKQM 166
P +E L + + G+ + +Q
Sbjct: 44 FP-SLEYLDLYRIKSGEELLQQT 65
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 26.3 bits (58), Expect = 7.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 10 KKALKKQAKEQEKKEKKDQRKSAQQNVEE 38
+A+K+ K +E +EK + K A++ E+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEK 334
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 26.0 bits (57), Expect = 8.8
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 10 KKALKKQAKEQEKKEKKDQRKSAQQNVEESEPVE 43
+A ++ ++KKE++++R + ++E E
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERE 422
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.335
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,569,028
Number of extensions: 139873
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 75
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.8 bits)